Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62999.t1 | XP_003589595.2 | 98.6 | 284 | 4 | 0 | 1 | 284 | 78 | 361 | 3.90E-155 | 557.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62999.t1 | A2RVV7 | 71.8 | 280 | 79 | 0 | 1 | 280 | 71 | 350 | 2.0e-115 | 416.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62999.t1 | G7I8G5 | 98.6 | 284 | 4 | 0 | 1 | 284 | 78 | 361 | 2.8e-155 | 557.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22986 | MS.gene62999 | PPI |
| MS.gene028080 | MS.gene62999 | PPI |
| MS.gene028078 | MS.gene62999 | PPI |
| MS.gene07116 | MS.gene62999 | PPI |
| MS.gene72831 | MS.gene62999 | PPI |
| MS.gene52204 | MS.gene62999 | PPI |
| MS.gene06972 | MS.gene62999 | PPI |
| MS.gene84986 | MS.gene62999 | PPI |
| MS.gene27688 | MS.gene62999 | PPI |
| MS.gene023835 | MS.gene62999 | PPI |
| MS.gene62999 | MS.gene070084 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62999.t1 | MTR_1g030450 | 98.592 | 284 | 4 | 0 | 1 | 284 | 78 | 361 | 0.0 | 570 |
| MS.gene62999.t1 | MTR_7g076680 | 62.898 | 283 | 105 | 0 | 1 | 283 | 85 | 367 | 2.04e-131 | 377 |
| MS.gene62999.t1 | MTR_7g076680 | 62.898 | 283 | 105 | 0 | 1 | 283 | 68 | 350 | 3.61e-131 | 376 |
| MS.gene62999.t1 | MTR_7g076680 | 62.898 | 283 | 105 | 0 | 1 | 283 | 64 | 346 | 1.26e-130 | 374 |
| MS.gene62999.t1 | MTR_3g007490 | 60.215 | 279 | 110 | 1 | 1 | 279 | 81 | 358 | 2.21e-126 | 364 |
| MS.gene62999.t1 | MTR_7g108580 | 61.290 | 279 | 108 | 0 | 1 | 279 | 10 | 288 | 8.81e-124 | 355 |
| MS.gene62999.t1 | MTR_3g007580 | 54.717 | 106 | 41 | 2 | 120 | 224 | 15 | 114 | 9.00e-32 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62999.t1 | AT2G38660 | 71.530 | 281 | 80 | 0 | 1 | 281 | 71 | 351 | 6.06e-150 | 424 |
| MS.gene62999.t1 | AT2G38660 | 71.530 | 281 | 80 | 0 | 1 | 281 | 71 | 351 | 6.06e-150 | 424 |
| MS.gene62999.t1 | AT4G00620 | 63.958 | 283 | 102 | 0 | 1 | 283 | 77 | 359 | 5.55e-134 | 384 |
| MS.gene62999.t1 | AT2G38660 | 71.371 | 248 | 71 | 0 | 1 | 248 | 71 | 318 | 6.36e-131 | 375 |
| MS.gene62999.t1 | AT3G12290 | 60.498 | 281 | 111 | 0 | 1 | 281 | 17 | 297 | 4.32e-122 | 351 |
| MS.gene62999.t1 | AT4G00600 | 60.251 | 239 | 94 | 1 | 46 | 283 | 71 | 309 | 2.82e-103 | 303 |
| MS.gene62999.t1 | AT2G38660 | 71.512 | 172 | 49 | 0 | 1 | 172 | 71 | 242 | 1.63e-86 | 258 |
| MS.gene62999.t1 | AT2G38660 | 64.516 | 93 | 33 | 0 | 1 | 93 | 71 | 163 | 1.50e-36 | 129 |
| MS.gene62999.t1 | AT2G38660 | 64.516 | 93 | 33 | 0 | 1 | 93 | 71 | 163 | 1.50e-36 | 129 |
| MS.gene62999.t1 | AT2G38660 | 64.516 | 93 | 33 | 0 | 1 | 93 | 71 | 163 | 1.50e-36 | 129 |
| MS.gene62999.t1 | AT2G38660 | 64.516 | 93 | 33 | 0 | 1 | 93 | 71 | 163 | 1.50e-36 | 129 |
Find 76 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAGATTTCCCATATTTAT+AGG | 0.199746 | 1.3:+16333463 | None:intergenic |
| CAGTTCCCACAGACCAAATT+TGG | 0.213494 | 1.3:+16332942 | None:intergenic |
| TCCCGGGTTAGCTGTTATTT+TGG | 0.242954 | 1.3:-16334193 | MS.gene62999:CDS |
| CAGATCTGGAGTTGAGATTA+TGG | 0.243746 | 1.3:-16333377 | MS.gene62999:CDS |
| GCTTCTGAGGTGATCTGTTC+AGG | 0.254290 | 1.3:+16332993 | None:intergenic |
| AGCTGCCGGAGTTCCAAATT+TGG | 0.354456 | 1.3:-16332955 | MS.gene62999:CDS |
| CAAATTTGGTCTGTGGGAAC+TGG | 0.359489 | 1.3:-16332941 | MS.gene62999:CDS |
| CTTCTGAGGTGATCTGTTCA+GGG | 0.370164 | 1.3:+16332994 | None:intergenic |
| ACCAACATCGTTATTATTGC+AGG | 0.371521 | 1.3:-16333311 | MS.gene62999:intron |
| CAACTCAATGCAGGCCTTTG+TGG | 0.375845 | 1.3:+16333405 | None:intergenic |
| AAGATCTAAAATAGCTGATC+AGG | 0.387246 | 1.3:-16334247 | MS.gene62999:CDS |
| GGGAAGAATGCCGTGGTGAT+AGG | 0.411300 | 1.3:-16333355 | MS.gene62999:CDS |
| AATCACAAGCTCACCTCAAC+AGG | 0.411310 | 1.3:+16332879 | None:intergenic |
| ATGGGAAATCTTGCTTTAAG+AGG | 0.424808 | 1.3:-16333454 | MS.gene62999:CDS |
| AGATCTGGAGTTGAGATTAT+GGG | 0.427144 | 1.3:-16333376 | MS.gene62999:CDS |
| TTATTACTCCTGTACCTGGT+GGG | 0.438276 | 1.3:-16332709 | MS.gene62999:CDS |
| AACAAGGACCCATCAATTCA+TGG | 0.439181 | 1.3:-16334033 | MS.gene62999:CDS |
| AAAGGCCTAGGAAAAGTTCC+CGG | 0.449294 | 1.3:-16334210 | MS.gene62999:CDS |
| ACAAGAATCCCATGAATTGA+TGG | 0.456818 | 1.3:+16334024 | None:intergenic |
| AACATCAGCATCTGCACAAT+CGG | 0.466459 | 1.3:+16334077 | None:intergenic |
| CACCAAAATAACAGCTAACC+CGG | 0.472440 | 1.3:+16334191 | None:intergenic |
| CTTCATTCCAACTTCTTCGC+AGG | 0.478945 | 1.3:+16334122 | None:intergenic |
| TCAGAAATTACTTGTGGTAG+AGG | 0.486662 | 1.3:+16333994 | None:intergenic |
| AGAAGCATAGTAACTGTCAT+AGG | 0.493876 | 1.3:+16332680 | None:intergenic |
| ATTGAGTTGTTGATCAGATC+TGG | 0.497667 | 1.3:-16333391 | MS.gene62999:CDS |
| ACTCCTGTACCTGGTGGGGT+TGG | 0.508928 | 1.3:-16332704 | MS.gene62999:CDS |
| ATAATTGCCTGCGAAGAAGT+TGG | 0.511331 | 1.3:-16334129 | MS.gene62999:CDS |
| TTACTTGTGGTAGAGGAAGC+TGG | 0.514178 | 1.3:+16334001 | None:intergenic |
| CAGGATCCTAGCTGCGAGGA+TGG | 0.515011 | 1.3:-16332785 | MS.gene62999:CDS |
| GAGGATGGTTATCGTCTAGT+AGG | 0.519814 | 1.3:-16332770 | MS.gene62999:CDS |
| GTGCTTTGAAGAAGTCATAA+AGG | 0.523208 | 1.3:-16332741 | MS.gene62999:CDS |
| ATGCAGGCCTTTGTGGTACA+AGG | 0.524272 | 1.3:+16333412 | None:intergenic |
| TTTCAAGACATACAGCGTCT+AGG | 0.530927 | 1.3:+16333506 | None:intergenic |
| ACCTGCAATAATAACGATGT+TGG | 0.533274 | 1.3:+16333310 | None:intergenic |
| GAAATCTTGCTTTAAGAGGA+AGG | 0.536522 | 1.3:-16333450 | MS.gene62999:CDS |
| AAGGCCTAGGAAAAGTTCCC+GGG | 0.537444 | 1.3:-16334209 | MS.gene62999:CDS |
| TCTGATCAACAACTCAATGC+AGG | 0.538753 | 1.3:+16333396 | None:intergenic |
| AAGTAAGAGAATCCCTCCTC+TGG | 0.543493 | 1.3:+16334166 | None:intergenic |
| AGACGCTGTATGTCTTGAAA+AGG | 0.545903 | 1.3:-16333503 | MS.gene62999:CDS |
| ATAGGAAGGAGTAATATTGT+TGG | 0.546862 | 1.3:-16333337 | MS.gene62999:CDS |
| GGTCCAACCCCACCAGGTAC+AGG | 0.551911 | 1.3:+16332701 | None:intergenic |
| GGAGTTCCAAATTTGGTCTG+TGG | 0.555795 | 1.3:-16332948 | MS.gene62999:CDS |
| ACAAGGACCCATCAATTCAT+GGG | 0.556155 | 1.3:-16334032 | MS.gene62999:CDS |
| GATATTGTAGTTTCAGCTGC+CGG | 0.560233 | 1.3:-16332969 | MS.gene62999:CDS |
| CGATAACCATCCTCGCAGCT+AGG | 0.562094 | 1.3:+16332779 | None:intergenic |
| TGTGGGAACTGGATAAAGTC+CGG | 0.563582 | 1.3:-16332930 | MS.gene62999:CDS |
| AACATCGATCACAGTTGCAC+CGG | 0.566749 | 1.3:+16332911 | None:intergenic |
| AAATCTTGCTTTAAGAGGAA+GGG | 0.571400 | 1.3:-16333449 | MS.gene62999:CDS |
| GAGTTCCAAATTTGGTCTGT+GGG | 0.575243 | 1.3:-16332947 | MS.gene62999:CDS |
| GGTGCAACTGTGATCGATGT+TGG | 0.583814 | 1.3:-16332909 | MS.gene62999:CDS |
| GTTATTACTCCTGTACCTGG+TGG | 0.584107 | 1.3:-16332710 | MS.gene62999:CDS |
| GTTTATTCCTTGTACCACAA+AGG | 0.584812 | 1.3:-16333419 | MS.gene62999:CDS |
| TTTGGGACAGCATCTGGACG+AGG | 0.585757 | 1.3:-16333536 | MS.gene62999:intron |
| AGAATGCCGTGGTGATAGGA+AGG | 0.586248 | 1.3:-16333351 | MS.gene62999:CDS |
| TCTGTTATTACTCCTGTACC+TGG | 0.586639 | 1.3:-16332713 | MS.gene62999:CDS |
| CAAGAATCCCATGAATTGAT+GGG | 0.587301 | 1.3:+16334025 | None:intergenic |
| GTCATAGGTCCAACCCCACC+AGG | 0.589287 | 1.3:+16332695 | None:intergenic |
| ACAGACCAAATTTGGAACTC+CGG | 0.591892 | 1.3:+16332950 | None:intergenic |
| TATTACTCCTGTACCTGGTG+GGG | 0.593792 | 1.3:-16332708 | MS.gene62999:CDS |
| GATCTGGAGTTGAGATTATG+GGG | 0.602042 | 1.3:-16333375 | MS.gene62999:CDS |
| GTACGACGGTGACTGTTGCA+TGG | 0.603199 | 1.3:+16333033 | None:intergenic |
| AACTACAATATCAGCTTCTG+AGG | 0.624409 | 1.3:+16332980 | None:intergenic |
| TGTTGGAACAATTCCTGTTG+AGG | 0.633352 | 1.3:-16332892 | MS.gene62999:intron |
| TCAGCATCTGCACAATCGGT+AGG | 0.639234 | 1.3:+16334081 | None:intergenic |
| GTGGTACAAGGAATAAACAA+TGG | 0.641093 | 1.3:+16333424 | None:intergenic |
| TGTCTTGAAAAGGACGTGGA+TGG | 0.641881 | 1.3:-16333493 | MS.gene62999:CDS |
| TTCTGTAAATGCATGTACGA+CGG | 0.642163 | 1.3:+16333019 | None:intergenic |
| TGATGGAAAGTTGATGGCAA+CGG | 0.644692 | 1.3:-16334274 | None:intergenic |
| TGCTATCATGAGATTCAACA+AGG | 0.656626 | 1.3:-16334049 | MS.gene62999:CDS |
| ACCAAAATAACAGCTAACCC+GGG | 0.677885 | 1.3:+16334192 | None:intergenic |
| CTTTGAAGAAGTCATAAAGG+TGG | 0.705733 | 1.3:-16332738 | MS.gene62999:CDS |
| ATTACTCCTTCCTATCACCA+CGG | 0.705836 | 1.3:+16333345 | None:intergenic |
| TGTATGTCTTGAAAAGGACG+TGG | 0.710007 | 1.3:-16333497 | MS.gene62999:CDS |
| AGAAGTTGGAATGAAGTCTG+TGG | 0.728221 | 1.3:-16334115 | MS.gene62999:CDS |
| GCAACAGGATCCTAGCTGCG+AGG | 0.729473 | 1.3:-16332789 | MS.gene62999:intron |
| GATTATGGGGAAGAATGCCG+TGG | 0.780443 | 1.3:-16333362 | MS.gene62999:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACAGATATAATTATTTA+TGG | - | chr1.3:16333055-16333074 | MS.gene62999:intron | 10.0% |
| !! | AATAAATAATTAGACAAATG+AGG | - | chr1.3:16333280-16333299 | MS.gene62999:intron | 15.0% |
| !! | TCCAATATTATCATGAAAAT+GGG | - | chr1.3:16333078-16333097 | MS.gene62999:intron | 20.0% |
| !! | TGATATAAATGAGATATGAT+TGG | + | chr1.3:16333668-16333687 | None:intergenic | 20.0% |
| !!! | TATTAAAAAGCATGAAATCA+TGG | - | chr1.3:16333784-16333803 | MS.gene62999:intron | 20.0% |
| !!! | TGTAATACATTCTTTTATGT+TGG | - | chr1.3:16333831-16333850 | MS.gene62999:intron | 20.0% |
| !!! | TTATATCTGTTATTTCAAAC+AGG | + | chr1.3:16333048-16333067 | None:intergenic | 20.0% |
| ! | AACTTAGAATTGTAGTAGAT+TGG | + | chr1.3:16333170-16333189 | None:intergenic | 25.0% |
| ! | AAGAATGTATTACACCTAAA+AGG | + | chr1.3:16333825-16333844 | None:intergenic | 25.0% |
| ! | AATAGTAACCCATCAAATTA+CGG | + | chr1.3:16332942-16332961 | None:intergenic | 25.0% |
| ! | CCAATATTATCATGAAAATG+GGG | - | chr1.3:16333079-16333098 | MS.gene62999:intron | 25.0% |
| ! | GTCCAATATTATCATGAAAA+TGG | - | chr1.3:16333077-16333096 | MS.gene62999:intron | 25.0% |
| ! | TAAATGAGATATGATTGGAT+TGG | + | chr1.3:16333663-16333682 | None:intergenic | 25.0% |
| !! | ATCATCACAAATTTCCTTTT+AGG | - | chr1.3:16333808-16333827 | MS.gene62999:intron | 25.0% |
| !! | GGTTTTCATCCTATAAATAT+GGG | - | chr1.3:16333423-16333442 | MS.gene62999:CDS | 25.0% |
| !! | GTAGATAATTGAGAAGTTTT+AGG | + | chr1.3:16333708-16333727 | None:intergenic | 25.0% |
| !! | TGGTTTTCATCCTATAAATA+TGG | - | chr1.3:16333422-16333441 | MS.gene62999:CDS | 25.0% |
| !!! | CAATTCTAAGTTTTGTTGTT+TGG | - | chr1.3:16333178-16333197 | MS.gene62999:intron | 25.0% |
| !!! | TGATTTGTTGCAAAATGTTT+GGG | - | chr1.3:16333342-16333361 | MS.gene62999:CDS | 25.0% |
| !!! | TTGATTTGTTGCAAAATGTT+TGG | - | chr1.3:16333341-16333360 | MS.gene62999:CDS | 25.0% |
| AAACAAGTTTACATGTCAGA+TGG | - | chr1.3:16333249-16333268 | MS.gene62999:intron | 30.0% | |
| ACAGATTCAGAAATTACTTG+TGG | + | chr1.3:16332910-16332929 | None:intergenic | 30.0% | |
| ATAGGAAGGAGTAATATTGT+TGG | - | chr1.3:16333558-16333577 | MS.gene62999:intron | 30.0% | |
| ATCAGTTAACCAAACTTCTA+CGG | - | chr1.3:16334076-16334095 | MS.gene62999:CDS | 30.0% | |
| CAGGTAAGACAAATGAAAAA+AGG | - | chr1.3:16332667-16332686 | MS.gene62999:CDS | 30.0% | |
| GCAAGATTTCCCATATTTAT+AGG | + | chr1.3:16333435-16333454 | None:intergenic | 30.0% | |
| TTCTATACTGACAATGCATA+CGG | + | chr1.3:16333623-16333642 | None:intergenic | 30.0% | |
| ! | AAGATCTAAAATAGCTGATC+AGG | - | chr1.3:16332648-16332667 | MS.gene62999:CDS | 30.0% |
| ! | ACTTTTTGCCGTAATTTGAT+GGG | - | chr1.3:16332931-16332950 | MS.gene62999:CDS | 30.0% |
| ! | CCCCATTTTCATGATAATAT+TGG | + | chr1.3:16333082-16333101 | None:intergenic | 30.0% |
| !! | AAATCTTGCTTTAAGAGGAA+GGG | - | chr1.3:16333446-16333465 | MS.gene62999:CDS | 30.0% |
| !!! | TTCTAAGTTTTGTTGTTTGG+AGG | - | chr1.3:16333181-16333200 | MS.gene62999:intron | 30.0% |
| AACTACAATATCAGCTTCTG+AGG | + | chr1.3:16333918-16333937 | None:intergenic | 35.0% | |
| ACAAGAATCCCATGAATTGA+TGG | + | chr1.3:16332874-16332893 | None:intergenic | 35.0% | |
| ACCAACATCGTTATTATTGC+AGG | - | chr1.3:16333584-16333603 | MS.gene62999:intron | 35.0% | |
| ACCTGCAATAATAACGATGT+TGG | + | chr1.3:16333588-16333607 | None:intergenic | 35.0% | |
| AGACAAATGAAAAAAGGCCT+AGG | - | chr1.3:16332673-16332692 | MS.gene62999:CDS | 35.0% | |
| CAAGAATCCCATGAATTGAT+GGG | + | chr1.3:16332873-16332892 | None:intergenic | 35.0% | |
| GTGGTACAAGGAATAAACAA+TGG | + | chr1.3:16333474-16333493 | None:intergenic | 35.0% | |
| GTTTATTCCTTGTACCACAA+AGG | - | chr1.3:16333476-16333495 | MS.gene62999:CDS | 35.0% | |
| TCAGAAATTACTTGTGGTAG+AGG | + | chr1.3:16332904-16332923 | None:intergenic | 35.0% | |
| TGCTATCATGAGATTCAACA+AGG | - | chr1.3:16332846-16332865 | MS.gene62999:intron | 35.0% | |
| TTCTACGGATAAAATGCAAC+AGG | - | chr1.3:16334091-16334110 | MS.gene62999:CDS | 35.0% | |
| TTCTGTAAATGCATGTACGA+CGG | + | chr1.3:16333879-16333898 | None:intergenic | 35.0% | |
| ! | AGAAGCATAGTAACTGTCAT+AGG | + | chr1.3:16334218-16334237 | None:intergenic | 35.0% |
| ! | AGATCTGGAGTTGAGATTAT+GGG | - | chr1.3:16333519-16333538 | MS.gene62999:CDS | 35.0% |
| ! | ATGGGAAATCTTGCTTTAAG+AGG | - | chr1.3:16333441-16333460 | MS.gene62999:CDS | 35.0% |
| ! | ATTGAGTTGTTGATCAGATC+TGG | - | chr1.3:16333504-16333523 | MS.gene62999:CDS | 35.0% |
| ! | CTTTGAAGAAGTCATAAAGG+TGG | - | chr1.3:16334157-16334176 | MS.gene62999:CDS | 35.0% |
| ! | GACTTTTTGCCGTAATTTGA+TGG | - | chr1.3:16332930-16332949 | MS.gene62999:CDS | 35.0% |
| ! | GCATTTTATCCGTAGAAGTT+TGG | + | chr1.3:16334088-16334107 | None:intergenic | 35.0% |
| ! | GTAGAATTGTTTTCTGTCGT+TGG | - | chr1.3:16333117-16333136 | MS.gene62999:intron | 35.0% |
| !! | GAAATCTTGCTTTAAGAGGA+AGG | - | chr1.3:16333445-16333464 | MS.gene62999:CDS | 35.0% |
| !! | GTGCTTTGAAGAAGTCATAA+AGG | - | chr1.3:16334154-16334173 | MS.gene62999:CDS | 35.0% |
| AACAAGGACCCATCAATTCA+TGG | - | chr1.3:16332862-16332881 | MS.gene62999:intron | 40.0% | |
| AACATCAGCATCTGCACAAT+CGG | + | chr1.3:16332821-16332840 | None:intergenic | 40.0% | |
| ACAAGGACCCATCAATTCAT+GGG | - | chr1.3:16332863-16332882 | MS.gene62999:intron | 40.0% | |
| ACCAAAATAACAGCTAACCC+GGG | + | chr1.3:16332706-16332725 | None:intergenic | 40.0% | |
| AGAAGTTGGAATGAAGTCTG+TGG | - | chr1.3:16332780-16332799 | MS.gene62999:CDS | 40.0% | |
| AGACGCTGTATGTCTTGAAA+AGG | - | chr1.3:16333392-16333411 | MS.gene62999:CDS | 40.0% | |
| ATAATTGCCTGCGAAGAAGT+TGG | - | chr1.3:16332766-16332785 | MS.gene62999:CDS | 40.0% | |
| ATTACTCCTTCCTATCACCA+CGG | + | chr1.3:16333553-16333572 | None:intergenic | 40.0% | |
| CACCAAAATAACAGCTAACC+CGG | + | chr1.3:16332707-16332726 | None:intergenic | 40.0% | |
| GAGTTCCAAATTTGGTCTGT+GGG | - | chr1.3:16333948-16333967 | MS.gene62999:intron | 40.0% | |
| GATATTGTAGTTTCAGCTGC+CGG | - | chr1.3:16333926-16333945 | MS.gene62999:intron | 40.0% | |
| TCTGATCAACAACTCAATGC+AGG | + | chr1.3:16333502-16333521 | None:intergenic | 40.0% | |
| TCTGTTATTACTCCTGTACC+TGG | - | chr1.3:16334182-16334201 | MS.gene62999:CDS | 40.0% | |
| TGTATGTCTTGAAAAGGACG+TGG | - | chr1.3:16333398-16333417 | MS.gene62999:CDS | 40.0% | |
| TGTTGGAACAATTCCTGTTG+AGG | - | chr1.3:16334003-16334022 | MS.gene62999:intron | 40.0% | |
| TTATTACTCCTGTACCTGGT+GGG | - | chr1.3:16334186-16334205 | MS.gene62999:CDS | 40.0% | |
| TTTCAAGACATACAGCGTCT+AGG | + | chr1.3:16333392-16333411 | None:intergenic | 40.0% | |
| ! | AAAATGTTTGGGACAGCATC+TGG | - | chr1.3:16333353-16333372 | MS.gene62999:CDS | 40.0% |
| ! | ACAGACCAAATTTGGAACTC+CGG | + | chr1.3:16333948-16333967 | None:intergenic | 40.0% |
| ! | CAGATCTGGAGTTGAGATTA+TGG | - | chr1.3:16333518-16333537 | MS.gene62999:CDS | 40.0% |
| ! | GATCTGGAGTTGAGATTATG+GGG | - | chr1.3:16333520-16333539 | MS.gene62999:CDS | 40.0% |
| !!! | GGGTTAGCTGTTATTTTGGT+GGG | - | chr1.3:16332706-16332725 | MS.gene62999:CDS | 40.0% |
| AAAGGCCTAGGAAAAGTTCC+CGG | - | chr1.3:16332685-16332704 | MS.gene62999:CDS | 45.0% | |
| AACATCGATCACAGTTGCAC+CGG | + | chr1.3:16333987-16334006 | None:intergenic | 45.0% | |
| AAGTAAGAGAATCCCTCCTC+TGG | + | chr1.3:16332732-16332751 | None:intergenic | 45.0% | |
| AATCACAAGCTCACCTCAAC+AGG | + | chr1.3:16334019-16334038 | None:intergenic | 45.0% | |
| CAAATTTGGTCTGTGGGAAC+TGG | - | chr1.3:16333954-16333973 | MS.gene62999:intron | 45.0% | |
| CAGTTCCCACAGACCAAATT+TGG | + | chr1.3:16333956-16333975 | None:intergenic | 45.0% | |
| CTTCATTCCAACTTCTTCGC+AGG | + | chr1.3:16332776-16332795 | None:intergenic | 45.0% | |
| GAGGATGGTTATCGTCTAGT+AGG | - | chr1.3:16334125-16334144 | MS.gene62999:CDS | 45.0% | |
| GGAGTTCCAAATTTGGTCTG+TGG | - | chr1.3:16333947-16333966 | MS.gene62999:intron | 45.0% | |
| GTGAGAGCAAGTGTGAGAAA+TGG | + | chr1.3:16332982-16333001 | None:intergenic | 45.0% | |
| GTTATTACTCCTGTACCTGG+TGG | - | chr1.3:16334185-16334204 | MS.gene62999:CDS | 45.0% | |
| TATTACTCCTGTACCTGGTG+GGG | - | chr1.3:16334187-16334206 | MS.gene62999:CDS | 45.0% | |
| TGTCTTGAAAAGGACGTGGA+TGG | - | chr1.3:16333402-16333421 | MS.gene62999:CDS | 45.0% | |
| TGTGGGAACTGGATAAAGTC+CGG | - | chr1.3:16333965-16333984 | MS.gene62999:intron | 45.0% | |
| TTACTTGTGGTAGAGGAAGC+TGG | + | chr1.3:16332897-16332916 | None:intergenic | 45.0% | |
| ! | GAGGATTAGCACTTGTGTTC+AGG | - | chr1.3:16333299-16333318 | MS.gene62999:intron | 45.0% |
| !! | CTTCTGAGGTGATCTGTTCA+GGG | + | chr1.3:16333904-16333923 | None:intergenic | 45.0% |
| !!! | CGGGTTAGCTGTTATTTTGG+TGG | - | chr1.3:16332705-16332724 | MS.gene62999:CDS | 45.0% |
| !!! | TCCCGGGTTAGCTGTTATTT+TGG | - | chr1.3:16332702-16332721 | MS.gene62999:CDS | 45.0% |
| AAGGCCTAGGAAAAGTTCCC+GGG | - | chr1.3:16332686-16332705 | MS.gene62999:CDS | 50.0% | |
| AGAATGCCGTGGTGATAGGA+AGG | - | chr1.3:16333544-16333563 | MS.gene62999:intron | 50.0% | |
| AGCTGCCGGAGTTCCAAATT+TGG | - | chr1.3:16333940-16333959 | MS.gene62999:intron | 50.0% | |
| ATGCAGGCCTTTGTGGTACA+AGG | + | chr1.3:16333486-16333505 | None:intergenic | 50.0% | |
| CAACTCAATGCAGGCCTTTG+TGG | + | chr1.3:16333493-16333512 | None:intergenic | 50.0% | |
| GATTATGGGGAAGAATGCCG+TGG | - | chr1.3:16333533-16333552 | MS.gene62999:intron | 50.0% | |
| GCTAAAGCTCAGCAAGCGAT+GGG | + | chr1.3:16333019-16333038 | None:intergenic | 50.0% | |
| GGTGCAACTGTGATCGATGT+TGG | - | chr1.3:16333986-16334005 | MS.gene62999:intron | 50.0% | |
| TCAGCATCTGCACAATCGGT+AGG | + | chr1.3:16332817-16332836 | None:intergenic | 50.0% | |
| TGCTAAAGCTCAGCAAGCGA+TGG | + | chr1.3:16333020-16333039 | None:intergenic | 50.0% | |
| ! | CTAACCCGGGAACTTTTCCT+AGG | + | chr1.3:16332693-16332712 | None:intergenic | 50.0% |
| !! | GCTTCTGAGGTGATCTGTTC+AGG | + | chr1.3:16333905-16333924 | None:intergenic | 50.0% |
| !!! | CTGTTATTTTGGTGGGCCAG+AGG | - | chr1.3:16332713-16332732 | MS.gene62999:CDS | 50.0% |
| !!! | TATTTTGGTGGGCCAGAGGA+GGG | - | chr1.3:16332717-16332736 | MS.gene62999:CDS | 50.0% |
| !!! | TTATTTTGGTGGGCCAGAGG+AGG | - | chr1.3:16332716-16332735 | MS.gene62999:CDS | 50.0% |
| CGATAACCATCCTCGCAGCT+AGG | + | chr1.3:16334119-16334138 | None:intergenic | 55.0% | |
| GGGAAGAATGCCGTGGTGAT+AGG | - | chr1.3:16333540-16333559 | MS.gene62999:intron | 55.0% | |
| GTACGACGGTGACTGTTGCA+TGG | + | chr1.3:16333865-16333884 | None:intergenic | 55.0% | |
| ! | TTTGGGACAGCATCTGGACG+AGG | - | chr1.3:16333359-16333378 | MS.gene62999:CDS | 55.0% |
| ACTCCTGTACCTGGTGGGGT+TGG | - | chr1.3:16334191-16334210 | MS.gene62999:CDS | 60.0% | |
| CAGGATCCTAGCTGCGAGGA+TGG | - | chr1.3:16334110-16334129 | MS.gene62999:CDS | 60.0% | |
| GCAACAGGATCCTAGCTGCG+AGG | - | chr1.3:16334106-16334125 | MS.gene62999:CDS | 60.0% | |
| GTCATAGGTCCAACCCCACC+AGG | + | chr1.3:16334203-16334222 | None:intergenic | 60.0% | |
| GGTCCAACCCCACCAGGTAC+AGG | + | chr1.3:16334197-16334216 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 16332634 | 16334283 | 16332634 | ID=MS.gene62999 |
| chr1.3 | mRNA | 16332634 | 16334283 | 16332634 | ID=MS.gene62999.t1;Parent=MS.gene62999 |
| chr1.3 | exon | 16334005 | 16334283 | 16334005 | ID=MS.gene62999.t1.exon1;Parent=MS.gene62999.t1 |
| chr1.3 | CDS | 16334005 | 16334283 | 16334005 | ID=cds.MS.gene62999.t1;Parent=MS.gene62999.t1 |
| chr1.3 | exon | 16333312 | 16333548 | 16333312 | ID=MS.gene62999.t1.exon2;Parent=MS.gene62999.t1 |
| chr1.3 | CDS | 16333312 | 16333548 | 16333312 | ID=cds.MS.gene62999.t1;Parent=MS.gene62999.t1 |
| chr1.3 | exon | 16332893 | 16333060 | 16332893 | ID=MS.gene62999.t1.exon3;Parent=MS.gene62999.t1 |
| chr1.3 | CDS | 16332893 | 16333060 | 16332893 | ID=cds.MS.gene62999.t1;Parent=MS.gene62999.t1 |
| chr1.3 | exon | 16332634 | 16332804 | 16332634 | ID=MS.gene62999.t1.exon4;Parent=MS.gene62999.t1 |
| chr1.3 | CDS | 16332634 | 16332804 | 16332634 | ID=cds.MS.gene62999.t1;Parent=MS.gene62999.t1 |
| Gene Sequence |
| Protein sequence |
