Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026617.t1 | XP_003589595.2 | 98.9 | 284 | 3 | 0 | 1 | 284 | 78 | 361 | 1.30E-155 | 558.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026617.t1 | A2RVV7 | 72.1 | 280 | 78 | 0 | 1 | 280 | 71 | 350 | 5.2e-116 | 418.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026617.t1 | G7I8G5 | 98.9 | 284 | 3 | 0 | 1 | 284 | 78 | 361 | 9.7e-156 | 558.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene026617 | MS.gene72831 | PPI |
| MS.gene026617 | MS.gene070084 | PPI |
| MS.gene026617 | MS.gene06972 | PPI |
| MS.gene84986 | MS.gene026617 | PPI |
| MS.gene27688 | MS.gene026617 | PPI |
| MS.gene026617 | MS.gene023835 | PPI |
| MS.gene028078 | MS.gene026617 | PPI |
| MS.gene22986 | MS.gene026617 | PPI |
| MS.gene028080 | MS.gene026617 | PPI |
| MS.gene07116 | MS.gene026617 | PPI |
| MS.gene52204 | MS.gene026617 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026617.t1 | MTR_1g030450 | 98.944 | 284 | 3 | 0 | 1 | 284 | 78 | 361 | 0.0 | 572 |
| MS.gene026617.t1 | MTR_7g076680 | 63.251 | 283 | 104 | 0 | 1 | 283 | 85 | 367 | 3.15e-132 | 379 |
| MS.gene026617.t1 | MTR_7g076680 | 63.251 | 283 | 104 | 0 | 1 | 283 | 68 | 350 | 5.89e-132 | 378 |
| MS.gene026617.t1 | MTR_7g076680 | 63.251 | 283 | 104 | 0 | 1 | 283 | 64 | 346 | 1.91e-131 | 376 |
| MS.gene026617.t1 | MTR_3g007490 | 60.573 | 279 | 109 | 1 | 1 | 279 | 81 | 358 | 4.40e-127 | 366 |
| MS.gene026617.t1 | MTR_7g108580 | 61.649 | 279 | 107 | 0 | 1 | 279 | 10 | 288 | 1.58e-124 | 357 |
| MS.gene026617.t1 | MTR_3g007580 | 54.717 | 106 | 41 | 2 | 120 | 224 | 15 | 114 | 8.53e-32 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026617.t1 | AT2G38660 | 71.886 | 281 | 79 | 0 | 1 | 281 | 71 | 351 | 8.64e-151 | 426 |
| MS.gene026617.t1 | AT2G38660 | 71.886 | 281 | 79 | 0 | 1 | 281 | 71 | 351 | 8.64e-151 | 426 |
| MS.gene026617.t1 | AT4G00620 | 64.311 | 283 | 101 | 0 | 1 | 283 | 77 | 359 | 9.15e-135 | 385 |
| MS.gene026617.t1 | AT2G38660 | 71.371 | 248 | 71 | 0 | 1 | 248 | 71 | 318 | 5.40e-131 | 375 |
| MS.gene026617.t1 | AT3G12290 | 60.854 | 281 | 110 | 0 | 1 | 281 | 17 | 297 | 7.36e-123 | 353 |
| MS.gene026617.t1 | AT4G00600 | 60.669 | 239 | 93 | 1 | 46 | 283 | 71 | 309 | 5.14e-104 | 305 |
| MS.gene026617.t1 | AT2G38660 | 71.512 | 172 | 49 | 0 | 1 | 172 | 71 | 242 | 1.70e-86 | 258 |
| MS.gene026617.t1 | AT2G38660 | 64.516 | 93 | 33 | 0 | 1 | 93 | 71 | 163 | 1.55e-36 | 129 |
| MS.gene026617.t1 | AT2G38660 | 64.516 | 93 | 33 | 0 | 1 | 93 | 71 | 163 | 1.55e-36 | 129 |
| MS.gene026617.t1 | AT2G38660 | 64.516 | 93 | 33 | 0 | 1 | 93 | 71 | 163 | 1.55e-36 | 129 |
| MS.gene026617.t1 | AT2G38660 | 64.516 | 93 | 33 | 0 | 1 | 93 | 71 | 163 | 1.55e-36 | 129 |
Find 76 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAGATTTCCCATATTTAT+AGG | 0.199746 | 1.1:+16128918 | None:intergenic |
| CAGTTCCCACAGACCAAATT+TGG | 0.213494 | 1.1:+16128402 | None:intergenic |
| TCCCGGGTTAGCTGTTATTT+TGG | 0.242954 | 1.1:-16129646 | MS.gene026617:CDS |
| CAGATCTGGAGTTGAGATTA+TGG | 0.243746 | 1.1:-16128832 | MS.gene026617:CDS |
| GCTTCTGAGGTGATCTGTTC+AGG | 0.254290 | 1.1:+16128453 | None:intergenic |
| AGCTGCCGGAGTTCCAAATT+TGG | 0.354456 | 1.1:-16128415 | MS.gene026617:CDS |
| CAAATTTGGTCTGTGGGAAC+TGG | 0.359489 | 1.1:-16128401 | MS.gene026617:CDS |
| CTTCTGAGGTGATCTGTTCA+GGG | 0.370164 | 1.1:+16128454 | None:intergenic |
| ACCAACATCGTTATTATTGC+AGG | 0.371521 | 1.1:-16128766 | MS.gene026617:intron |
| CAGATCTAAAATAGCTGATC+AGG | 0.374615 | 1.1:-16129700 | MS.gene026617:CDS |
| CAACTCAATGCAGGCCTTTG+TGG | 0.375845 | 1.1:+16128860 | None:intergenic |
| GGGAAGAATGCCGTGGTGAT+AGG | 0.411300 | 1.1:-16128810 | MS.gene026617:CDS |
| AATCACAAGCTCACCTCAAC+AGG | 0.411310 | 1.1:+16128339 | None:intergenic |
| ATGGGAAATCTTGCTTTAAG+AGG | 0.424808 | 1.1:-16128909 | MS.gene026617:CDS |
| AGATCTGGAGTTGAGATTAT+GGG | 0.427144 | 1.1:-16128831 | MS.gene026617:CDS |
| AACAAGGATCCATCAATTCA+TGG | 0.432382 | 1.1:-16129486 | MS.gene026617:CDS |
| CTTCATTCCAACTTCTTCAC+AGG | 0.436314 | 1.1:+16129575 | None:intergenic |
| TTATTACTCCTGTACCTGGT+GGG | 0.438276 | 1.1:-16128169 | MS.gene026617:CDS |
| AAAGGCCTAGGAAAAGTTCC+CGG | 0.449294 | 1.1:-16129663 | MS.gene026617:CDS |
| ACAAGAATCCCATGAATTGA+TGG | 0.455595 | 1.1:+16129477 | None:intergenic |
| AACATCAGCATCTGCACAAT+CGG | 0.466459 | 1.1:+16129530 | None:intergenic |
| CACCAAAATAACAGCTAACC+CGG | 0.472440 | 1.1:+16129644 | None:intergenic |
| CTAAAATAGCTGATCAGGTA+AGG | 0.481917 | 1.1:-16129695 | MS.gene026617:CDS |
| AGAAGCATAGTAACTGTCAT+AGG | 0.493876 | 1.1:+16128140 | None:intergenic |
| TCAGAAATTACTTGTGGTAG+AGG | 0.495686 | 1.1:+16129447 | None:intergenic |
| ATTGAGTTGTTGATCAGATC+TGG | 0.497667 | 1.1:-16128846 | MS.gene026617:CDS |
| ACTCCTGTACCTGGTGGGGT+TGG | 0.508928 | 1.1:-16128164 | MS.gene026617:CDS |
| ATAATTGCCTGTGAAGAAGT+TGG | 0.509154 | 1.1:-16129582 | MS.gene026617:CDS |
| TTACTTGTGGTAGAGGAAGC+TGG | 0.514178 | 1.1:+16129454 | None:intergenic |
| CAGGATCCTAGCTGCGAGGA+TGG | 0.515011 | 1.1:-16128245 | MS.gene026617:CDS |
| GAGGATGGTTATCGTCTAGT+AGG | 0.519814 | 1.1:-16128230 | MS.gene026617:CDS |
| GTGCTTTGAAGAAGTCATAA+AGG | 0.523208 | 1.1:-16128201 | MS.gene026617:CDS |
| ATGCAGGCCTTTGTGGTACA+AGG | 0.524272 | 1.1:+16128867 | None:intergenic |
| ACAAGGATCCATCAATTCAT+GGG | 0.526916 | 1.1:-16129485 | MS.gene026617:CDS |
| AGACGCTGTATGTCTTGAAA+AGG | 0.530536 | 1.1:-16128958 | MS.gene026617:CDS |
| TTTCAAGACATACAGCGTCT+AGG | 0.530927 | 1.1:+16128961 | None:intergenic |
| ACCTGCAATAATAACGATGT+TGG | 0.533274 | 1.1:+16128765 | None:intergenic |
| GAAATCTTGCTTTAAGAGGA+AGG | 0.536522 | 1.1:-16128905 | MS.gene026617:CDS |
| AAGGCCTAGGAAAAGTTCCC+GGG | 0.537444 | 1.1:-16129662 | MS.gene026617:CDS |
| TCTGATCAACAACTCAATGC+AGG | 0.538753 | 1.1:+16128851 | None:intergenic |
| AAGTAAGAGAATCCCTCCTC+TGG | 0.543493 | 1.1:+16129619 | None:intergenic |
| ATAGGAAGGAGTAATATTGT+TGG | 0.546862 | 1.1:-16128792 | MS.gene026617:CDS |
| GGTCCAACCCCACCAGGTAC+AGG | 0.551911 | 1.1:+16128161 | None:intergenic |
| GGAGTTCCAAATTTGGTCTG+TGG | 0.555795 | 1.1:-16128408 | MS.gene026617:CDS |
| GATATTGTAGTTTCAGCTGC+CGG | 0.560233 | 1.1:-16128429 | MS.gene026617:CDS |
| CGATAACCATCCTCGCAGCT+AGG | 0.562094 | 1.1:+16128239 | None:intergenic |
| TGTGGGAACTGGATAAAGTC+CGG | 0.563582 | 1.1:-16128390 | MS.gene026617:CDS |
| AACATCGATCACAGTTGCAC+CGG | 0.566749 | 1.1:+16128371 | None:intergenic |
| AAATCTTGCTTTAAGAGGAA+GGG | 0.571400 | 1.1:-16128904 | MS.gene026617:CDS |
| GAGTTCCAAATTTGGTCTGT+GGG | 0.575243 | 1.1:-16128407 | MS.gene026617:CDS |
| GGTGCAACTGTGATCGATGT+TGG | 0.583814 | 1.1:-16128369 | MS.gene026617:CDS |
| GTTATTACTCCTGTACCTGG+TGG | 0.584107 | 1.1:-16128170 | MS.gene026617:CDS |
| GTTTATTCCTTGTACCACAA+AGG | 0.584812 | 1.1:-16128874 | MS.gene026617:CDS |
| TTTGGGACAGCATCTGGACG+AGG | 0.585757 | 1.1:-16128991 | MS.gene026617:intron |
| AGAATGCCGTGGTGATAGGA+AGG | 0.586248 | 1.1:-16128806 | MS.gene026617:CDS |
| TCTGTTATTACTCCTGTACC+TGG | 0.586639 | 1.1:-16128173 | MS.gene026617:CDS |
| GTCATAGGTCCAACCCCACC+AGG | 0.589287 | 1.1:+16128155 | None:intergenic |
| ACAGACCAAATTTGGAACTC+CGG | 0.591892 | 1.1:+16128410 | None:intergenic |
| TATTACTCCTGTACCTGGTG+GGG | 0.593792 | 1.1:-16128168 | MS.gene026617:CDS |
| GATCTGGAGTTGAGATTATG+GGG | 0.602042 | 1.1:-16128830 | MS.gene026617:CDS |
| GTACGACGGTGACTGTTGCA+TGG | 0.603199 | 1.1:+16128493 | None:intergenic |
| AACTACAATATCAGCTTCTG+AGG | 0.624409 | 1.1:+16128440 | None:intergenic |
| TGTTGGAACAATTCCTGTTG+AGG | 0.633352 | 1.1:-16128352 | MS.gene026617:intron |
| TCAGCATCTGCACAATCGGT+AGG | 0.639234 | 1.1:+16129534 | None:intergenic |
| TGTCTTGAAAAGGATGTGGA+TGG | 0.640881 | 1.1:-16128948 | MS.gene026617:CDS |
| GTGGTACAAGGAATAAACAA+TGG | 0.641093 | 1.1:+16128879 | None:intergenic |
| TTCTGTAAATGCATGTACGA+CGG | 0.642163 | 1.1:+16128479 | None:intergenic |
| TGATGGAAAGTTGATGGCAA+CGG | 0.644692 | 1.1:-16129727 | None:intergenic |
| TGTATGTCTTGAAAAGGATG+TGG | 0.652934 | 1.1:-16128952 | MS.gene026617:CDS |
| TGCTATCATGAGATTCAACA+AGG | 0.657595 | 1.1:-16129502 | MS.gene026617:CDS |
| ACCAAAATAACAGCTAACCC+GGG | 0.677885 | 1.1:+16129645 | None:intergenic |
| CTTTGAAGAAGTCATAAAGG+TGG | 0.705733 | 1.1:-16128198 | MS.gene026617:CDS |
| ATTACTCCTTCCTATCACCA+CGG | 0.705836 | 1.1:+16128800 | None:intergenic |
| GCAACAGGATCCTAGCTGCG+AGG | 0.729473 | 1.1:-16128249 | MS.gene026617:intron |
| AGAAGTTGGAATGAAGTCTG+TGG | 0.734363 | 1.1:-16129568 | MS.gene026617:CDS |
| GATTATGGGGAAGAATGCCG+TGG | 0.780443 | 1.1:-16128817 | MS.gene026617:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAATTAGACAAATG+AGG | - | chr1.1:16128738-16128757 | MS.gene026617:intron | 15.0% |
| !!! | TTATATATGTTATTTCAAAC+AGG | + | chr1.1:16128508-16128527 | None:intergenic | 15.0% |
| !! | TCCAATATTATCATGAAAAT+GGG | - | chr1.1:16128538-16128557 | MS.gene026617:intron | 20.0% |
| !! | TGATATAAATGAGATATGAT+TGG | + | chr1.1:16129121-16129140 | None:intergenic | 20.0% |
| !!! | TATTAAAAAGCATGAAATCA+TGG | - | chr1.1:16129237-16129256 | MS.gene026617:intron | 20.0% |
| ! | AACTTAGAATTGTAGTAGAT+TGG | + | chr1.1:16128630-16128649 | None:intergenic | 25.0% |
| ! | AAGAATGTATTACACCTAAA+AGG | + | chr1.1:16129278-16129297 | None:intergenic | 25.0% |
| ! | AATAGTAACCCATCAAATTA+CGG | + | chr1.1:16128402-16128421 | None:intergenic | 25.0% |
| ! | CCAATATTATCATGAAAATG+GGG | - | chr1.1:16128539-16128558 | MS.gene026617:intron | 25.0% |
| ! | GTCCAATATTATCATGAAAA+TGG | - | chr1.1:16128537-16128556 | MS.gene026617:intron | 25.0% |
| !! | GGTTTTCATCCTATAAATAT+GGG | - | chr1.1:16128881-16128900 | MS.gene026617:CDS | 25.0% |
| !! | GTAGATAATTGAGAAGTTTT+AGG | + | chr1.1:16129161-16129180 | None:intergenic | 25.0% |
| !! | TGGTTTTCATCCTATAAATA+TGG | - | chr1.1:16128880-16128899 | MS.gene026617:CDS | 25.0% |
| !! | TGTAATACATTCTTTTGTGT+TGG | - | chr1.1:16129284-16129303 | MS.gene026617:intron | 25.0% |
| !!! | CAATTCTAAGTTTTGTTGTT+TGG | - | chr1.1:16128638-16128657 | MS.gene026617:intron | 25.0% |
| !!! | TGATTTGTTGCAAAATGTTT+GGG | - | chr1.1:16128800-16128819 | MS.gene026617:CDS | 25.0% |
| !!! | TTGATTTGTTGCAAAATGTT+TGG | - | chr1.1:16128799-16128818 | MS.gene026617:CDS | 25.0% |
| AAACAAGTTTACATGTCAGA+TGG | - | chr1.1:16128707-16128726 | MS.gene026617:intron | 30.0% | |
| ACACATTCAGAAATTACTTG+TGG | + | chr1.1:16128370-16128389 | None:intergenic | 30.0% | |
| ATAGGAAGGAGTAATATTGT+TGG | - | chr1.1:16129016-16129035 | MS.gene026617:intron | 30.0% | |
| ATCAGTTAACCAAACTTCTA+CGG | - | chr1.1:16129529-16129548 | MS.gene026617:CDS | 30.0% | |
| GCAAGATTTCCCATATTTAT+AGG | + | chr1.1:16128893-16128912 | None:intergenic | 30.0% | |
| TACACCTAAAAGGAAATTTG+TGG | + | chr1.1:16129268-16129287 | None:intergenic | 30.0% | |
| TTCTATACTGACAATGCATA+CGG | + | chr1.1:16129081-16129100 | None:intergenic | 30.0% | |
| ! | ACTTTTTGCCGTAATTTGAT+GGG | - | chr1.1:16128391-16128410 | MS.gene026617:CDS | 30.0% |
| ! | ATCACCACAAATTTCCTTTT+AGG | - | chr1.1:16129261-16129280 | MS.gene026617:intron | 30.0% |
| ! | CCCCATTTTCATGATAATAT+TGG | + | chr1.1:16128542-16128561 | None:intergenic | 30.0% |
| !! | AAATCTTGCTTTAAGAGGAA+GGG | - | chr1.1:16128904-16128923 | MS.gene026617:CDS | 30.0% |
| !!! | TTCTAAGTTTTGTTGTTTGG+AGG | - | chr1.1:16128641-16128660 | MS.gene026617:intron | 30.0% |
| AACAAGGATCCATCAATTCA+TGG | - | chr1.1:16128322-16128341 | MS.gene026617:intron | 35.0% | |
| AACTACAATATCAGCTTCTG+AGG | + | chr1.1:16129371-16129390 | None:intergenic | 35.0% | |
| ACAAGAATCCCATGAATTGA+TGG | + | chr1.1:16128334-16128353 | None:intergenic | 35.0% | |
| ACAAGGATCCATCAATTCAT+GGG | - | chr1.1:16128323-16128342 | MS.gene026617:intron | 35.0% | |
| ACCAACATCGTTATTATTGC+AGG | - | chr1.1:16129042-16129061 | MS.gene026617:intron | 35.0% | |
| ACCTGCAATAATAACGATGT+TGG | + | chr1.1:16129046-16129065 | None:intergenic | 35.0% | |
| ATAATTGCCTGTGAAGAAGT+TGG | - | chr1.1:16128226-16128245 | MS.gene026617:CDS | 35.0% | |
| CAGGTAAGGCAAATGAAAAA+AGG | - | chr1.1:16128127-16128146 | MS.gene026617:CDS | 35.0% | |
| CTAAAATAGCTGATCAGGTA+AGG | - | chr1.1:16128113-16128132 | MS.gene026617:CDS | 35.0% | |
| GTGGTACAAGGAATAAACAA+TGG | + | chr1.1:16128932-16128951 | None:intergenic | 35.0% | |
| GTTTATTCCTTGTACCACAA+AGG | - | chr1.1:16128934-16128953 | MS.gene026617:CDS | 35.0% | |
| TCAGAAATTACTTGTGGTAG+AGG | + | chr1.1:16128364-16128383 | None:intergenic | 35.0% | |
| TGCTATCATGAGATTCAACA+AGG | - | chr1.1:16128306-16128325 | MS.gene026617:intron | 35.0% | |
| TGTATGTCTTGAAAAGGATG+TGG | - | chr1.1:16128856-16128875 | MS.gene026617:CDS | 35.0% | |
| TTCTACGGATAAAATGCAAC+AGG | - | chr1.1:16129544-16129563 | MS.gene026617:CDS | 35.0% | |
| TTCTGTAAATGCATGTACGA+CGG | + | chr1.1:16129332-16129351 | None:intergenic | 35.0% | |
| ! | AGAAGCATAGTAACTGTCAT+AGG | + | chr1.1:16129671-16129690 | None:intergenic | 35.0% |
| ! | AGATCTGGAGTTGAGATTAT+GGG | - | chr1.1:16128977-16128996 | MS.gene026617:CDS | 35.0% |
| ! | ATGGGAAATCTTGCTTTAAG+AGG | - | chr1.1:16128899-16128918 | MS.gene026617:CDS | 35.0% |
| ! | ATTGAGTTGTTGATCAGATC+TGG | - | chr1.1:16128962-16128981 | MS.gene026617:CDS | 35.0% |
| ! | CAGATCTAAAATAGCTGATC+AGG | - | chr1.1:16128108-16128127 | MS.gene026617:CDS | 35.0% |
| ! | CTTTGAAGAAGTCATAAAGG+TGG | - | chr1.1:16129610-16129629 | MS.gene026617:CDS | 35.0% |
| ! | GACTTTTTGCCGTAATTTGA+TGG | - | chr1.1:16128390-16128409 | MS.gene026617:CDS | 35.0% |
| ! | GCATTTTATCCGTAGAAGTT+TGG | + | chr1.1:16129541-16129560 | None:intergenic | 35.0% |
| ! | GTAGAATTCTTTTCTGTCGT+TGG | - | chr1.1:16128577-16128596 | MS.gene026617:intron | 35.0% |
| !! | GAAATCTTGCTTTAAGAGGA+AGG | - | chr1.1:16128903-16128922 | MS.gene026617:CDS | 35.0% |
| !! | GTGCTTTGAAGAAGTCATAA+AGG | - | chr1.1:16129607-16129626 | MS.gene026617:CDS | 35.0% |
| AACATCAGCATCTGCACAAT+CGG | + | chr1.1:16128281-16128300 | None:intergenic | 40.0% | |
| ACCAAAATAACAGCTAACCC+GGG | + | chr1.1:16128166-16128185 | None:intergenic | 40.0% | |
| AGAAGTTGGAATGAAGTCTG+TGG | - | chr1.1:16128240-16128259 | MS.gene026617:CDS | 40.0% | |
| AGACGCTGTATGTCTTGAAA+AGG | - | chr1.1:16128850-16128869 | MS.gene026617:CDS | 40.0% | |
| AGGCAAATGAAAAAAGGCCT+AGG | - | chr1.1:16128133-16128152 | MS.gene026617:CDS | 40.0% | |
| ATTACTCCTTCCTATCACCA+CGG | + | chr1.1:16129011-16129030 | None:intergenic | 40.0% | |
| CACCAAAATAACAGCTAACC+CGG | + | chr1.1:16128167-16128186 | None:intergenic | 40.0% | |
| CTTCATTCCAACTTCTTCAC+AGG | + | chr1.1:16128236-16128255 | None:intergenic | 40.0% | |
| GAGTTCCAAATTTGGTCTGT+GGG | - | chr1.1:16129401-16129420 | MS.gene026617:intron | 40.0% | |
| GATATTGTAGTTTCAGCTGC+CGG | - | chr1.1:16129379-16129398 | MS.gene026617:intron | 40.0% | |
| TCTGATCAACAACTCAATGC+AGG | + | chr1.1:16128960-16128979 | None:intergenic | 40.0% | |
| TCTGTTATTACTCCTGTACC+TGG | - | chr1.1:16129635-16129654 | MS.gene026617:CDS | 40.0% | |
| TGTCTTGAAAAGGATGTGGA+TGG | - | chr1.1:16128860-16128879 | MS.gene026617:CDS | 40.0% | |
| TGTTGGAACAATTCCTGTTG+AGG | - | chr1.1:16129456-16129475 | MS.gene026617:intron | 40.0% | |
| TTATTACTCCTGTACCTGGT+GGG | - | chr1.1:16129639-16129658 | MS.gene026617:CDS | 40.0% | |
| TTTCAAGACATACAGCGTCT+AGG | + | chr1.1:16128850-16128869 | None:intergenic | 40.0% | |
| ! | AAAATGTTTGGGACAGCATC+TGG | - | chr1.1:16128811-16128830 | MS.gene026617:CDS | 40.0% |
| ! | ACAGACCAAATTTGGAACTC+CGG | + | chr1.1:16129401-16129420 | None:intergenic | 40.0% |
| ! | CAGATCTGGAGTTGAGATTA+TGG | - | chr1.1:16128976-16128995 | MS.gene026617:CDS | 40.0% |
| ! | GATCTGGAGTTGAGATTATG+GGG | - | chr1.1:16128978-16128997 | MS.gene026617:CDS | 40.0% |
| !!! | GGGTTAGCTGTTATTTTGGT+GGG | - | chr1.1:16128166-16128185 | MS.gene026617:CDS | 40.0% |
| AAAGGCCTAGGAAAAGTTCC+CGG | - | chr1.1:16128145-16128164 | MS.gene026617:CDS | 45.0% | |
| AACATCGATCACAGTTGCAC+CGG | + | chr1.1:16129440-16129459 | None:intergenic | 45.0% | |
| AAGTAAGAGAATCCCTCCTC+TGG | + | chr1.1:16128192-16128211 | None:intergenic | 45.0% | |
| AATCACAAGCTCACCTCAAC+AGG | + | chr1.1:16129472-16129491 | None:intergenic | 45.0% | |
| CAAATTTGGTCTGTGGGAAC+TGG | - | chr1.1:16129407-16129426 | MS.gene026617:intron | 45.0% | |
| CAGTTCCCACAGACCAAATT+TGG | + | chr1.1:16129409-16129428 | None:intergenic | 45.0% | |
| GAGGATGGTTATCGTCTAGT+AGG | - | chr1.1:16129578-16129597 | MS.gene026617:CDS | 45.0% | |
| GCTAAAGTTCAGCAAGCGAT+GGG | + | chr1.1:16128479-16128498 | None:intergenic | 45.0% | |
| GGAGTTCCAAATTTGGTCTG+TGG | - | chr1.1:16129400-16129419 | MS.gene026617:intron | 45.0% | |
| GTTATTACTCCTGTACCTGG+TGG | - | chr1.1:16129638-16129657 | MS.gene026617:CDS | 45.0% | |
| TATTACTCCTGTACCTGGTG+GGG | - | chr1.1:16129640-16129659 | MS.gene026617:CDS | 45.0% | |
| TGCTAAAGTTCAGCAAGCGA+TGG | + | chr1.1:16128480-16128499 | None:intergenic | 45.0% | |
| TGTGGGAACTGGATAAAGTC+CGG | - | chr1.1:16129418-16129437 | MS.gene026617:intron | 45.0% | |
| TTACTTGTGGTAGAGGAAGC+TGG | + | chr1.1:16128357-16128376 | None:intergenic | 45.0% | |
| ! | GAGGATTAGCACTTGTGTTC+AGG | - | chr1.1:16128757-16128776 | MS.gene026617:intron | 45.0% |
| !! | CTTCTGAGGTGATCTGTTCA+GGG | + | chr1.1:16129357-16129376 | None:intergenic | 45.0% |
| !!! | CGGGTTAGCTGTTATTTTGG+TGG | - | chr1.1:16128165-16128184 | MS.gene026617:CDS | 45.0% |
| !!! | TCCCGGGTTAGCTGTTATTT+TGG | - | chr1.1:16128162-16128181 | MS.gene026617:CDS | 45.0% |
| !! | ATAACATATATAATTATTTA+TGG | - | chr1.1:16128515-16128534 | MS.gene026617:intron | 5.0% |
| AAGGCCTAGGAAAAGTTCCC+GGG | - | chr1.1:16128146-16128165 | MS.gene026617:CDS | 50.0% | |
| AGAATGCCGTGGTGATAGGA+AGG | - | chr1.1:16129002-16129021 | MS.gene026617:intron | 50.0% | |
| AGCTGCCGGAGTTCCAAATT+TGG | - | chr1.1:16129393-16129412 | MS.gene026617:intron | 50.0% | |
| ATGCAGGCCTTTGTGGTACA+AGG | + | chr1.1:16128944-16128963 | None:intergenic | 50.0% | |
| CAACTCAATGCAGGCCTTTG+TGG | + | chr1.1:16128951-16128970 | None:intergenic | 50.0% | |
| GATTATGGGGAAGAATGCCG+TGG | - | chr1.1:16128991-16129010 | MS.gene026617:intron | 50.0% | |
| GGTGCAACTGTGATCGATGT+TGG | - | chr1.1:16129439-16129458 | MS.gene026617:intron | 50.0% | |
| TCAGCATCTGCACAATCGGT+AGG | + | chr1.1:16128277-16128296 | None:intergenic | 50.0% | |
| ! | CTAACCCGGGAACTTTTCCT+AGG | + | chr1.1:16128153-16128172 | None:intergenic | 50.0% |
| !! | GCTTCTGAGGTGATCTGTTC+AGG | + | chr1.1:16129358-16129377 | None:intergenic | 50.0% |
| !!! | CTGTTATTTTGGTGGGCCAG+AGG | - | chr1.1:16128173-16128192 | MS.gene026617:CDS | 50.0% |
| !!! | TATTTTGGTGGGCCAGAGGA+GGG | - | chr1.1:16128177-16128196 | MS.gene026617:CDS | 50.0% |
| !!! | TTATTTTGGTGGGCCAGAGG+AGG | - | chr1.1:16128176-16128195 | MS.gene026617:CDS | 50.0% |
| CGATAACCATCCTCGCAGCT+AGG | + | chr1.1:16129572-16129591 | None:intergenic | 55.0% | |
| GGGAAGAATGCCGTGGTGAT+AGG | - | chr1.1:16128998-16129017 | MS.gene026617:intron | 55.0% | |
| GTACGACGGTGACTGTTGCA+TGG | + | chr1.1:16129318-16129337 | None:intergenic | 55.0% | |
| ! | TTTGGGACAGCATCTGGACG+AGG | - | chr1.1:16128817-16128836 | MS.gene026617:CDS | 55.0% |
| ACTCCTGTACCTGGTGGGGT+TGG | - | chr1.1:16129644-16129663 | MS.gene026617:CDS | 60.0% | |
| CAGGATCCTAGCTGCGAGGA+TGG | - | chr1.1:16129563-16129582 | MS.gene026617:CDS | 60.0% | |
| GCAACAGGATCCTAGCTGCG+AGG | - | chr1.1:16129559-16129578 | MS.gene026617:CDS | 60.0% | |
| GTCATAGGTCCAACCCCACC+AGG | + | chr1.1:16129656-16129675 | None:intergenic | 60.0% | |
| GGTCCAACCCCACCAGGTAC+AGG | + | chr1.1:16129650-16129669 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 16128094 | 16129736 | 16128094 | ID=MS.gene026617 |
| chr1.1 | mRNA | 16128094 | 16129736 | 16128094 | ID=MS.gene026617.t1;Parent=MS.gene026617 |
| chr1.1 | exon | 16129458 | 16129736 | 16129458 | ID=MS.gene026617.t1.exon1;Parent=MS.gene026617.t1 |
| chr1.1 | CDS | 16129458 | 16129736 | 16129458 | ID=cds.MS.gene026617.t1;Parent=MS.gene026617.t1 |
| chr1.1 | exon | 16128767 | 16129003 | 16128767 | ID=MS.gene026617.t1.exon2;Parent=MS.gene026617.t1 |
| chr1.1 | CDS | 16128767 | 16129003 | 16128767 | ID=cds.MS.gene026617.t1;Parent=MS.gene026617.t1 |
| chr1.1 | exon | 16128353 | 16128520 | 16128353 | ID=MS.gene026617.t1.exon3;Parent=MS.gene026617.t1 |
| chr1.1 | CDS | 16128353 | 16128520 | 16128353 | ID=cds.MS.gene026617.t1;Parent=MS.gene026617.t1 |
| chr1.1 | exon | 16128094 | 16128264 | 16128094 | ID=MS.gene026617.t1.exon4;Parent=MS.gene026617.t1 |
| chr1.1 | CDS | 16128094 | 16128264 | 16128094 | ID=cds.MS.gene026617.t1;Parent=MS.gene026617.t1 |
| Gene Sequence |
| Protein sequence |
