Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23145.t1 | XP_003626165.1 | 91.1 | 415 | 18 | 2 | 1 | 405 | 34 | 439 | 2.10E-210 | 741.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23145.t1 | Q93ZW0 | 61.1 | 435 | 123 | 9 | 3 | 405 | 43 | 463 | 3.2e-135 | 483.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23145.t1 | G7KWH1 | 91.1 | 415 | 18 | 2 | 1 | 405 | 34 | 439 | 1.5e-210 | 741.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049427 | MS.gene23145 | 0.817979 | 2.49E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene23145 | 0.826283 | 2.95E-54 | -1.69E-46 |
| MS.gene050781 | MS.gene23145 | 0.855694 | 5.31E-62 | -1.69E-46 |
| MS.gene050783 | MS.gene23145 | 0.960489 | 1.29E-118 | -1.69E-46 |
| MS.gene050812 | MS.gene23145 | 0.803684 | 3.10E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene23145 | 0.822268 | 2.59E-53 | -1.69E-46 |
| MS.gene052326 | MS.gene23145 | 0.819517 | 1.11E-52 | -1.69E-46 |
| MS.gene054123 | MS.gene23145 | 0.823262 | 1.52E-53 | -1.69E-46 |
| MS.gene054376 | MS.gene23145 | 0.813274 | 2.78E-51 | -1.69E-46 |
| MS.gene05455 | MS.gene23145 | 0.822298 | 2.55E-53 | -1.69E-46 |
| MS.gene054802 | MS.gene23145 | 0.810588 | 1.07E-50 | -1.69E-46 |
| MS.gene054803 | MS.gene23145 | 0.811017 | 8.64E-51 | -1.69E-46 |
| MS.gene054804 | MS.gene23145 | 0.811553 | 6.61E-51 | -1.69E-46 |
| MS.gene055499 | MS.gene23145 | 0.802284 | 6.04E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene23145 | 0.823721 | 1.19E-53 | -1.69E-46 |
| MS.gene056452 | MS.gene23145 | 0.816627 | 5.02E-52 | -1.69E-46 |
| MS.gene057011 | MS.gene23145 | 0.808231 | 3.43E-50 | -1.69E-46 |
| MS.gene058019 | MS.gene23145 | 0.813567 | 2.40E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene23145 | 0.817073 | 3.98E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene23145 | 0.820618 | 6.24E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene23145 | 0.806618 | 7.54E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene23145 | 0.809392 | 1.94E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23145.t1 | MTR_7g111760 | 91.084 | 415 | 18 | 2 | 1 | 405 | 34 | 439 | 0.0 | 765 |
| MS.gene23145.t1 | MTR_7g111760 | 92.378 | 328 | 6 | 2 | 88 | 405 | 1 | 319 | 0.0 | 613 |
| MS.gene23145.t1 | MTR_7g022440 | 48.802 | 334 | 141 | 4 | 93 | 405 | 105 | 429 | 1.18e-107 | 329 |
| MS.gene23145.t1 | MTR_6g022860 | 39.489 | 352 | 185 | 6 | 73 | 405 | 10 | 352 | 3.59e-77 | 248 |
| MS.gene23145.t1 | MTR_7g037440 | 39.080 | 348 | 182 | 7 | 77 | 405 | 13 | 349 | 1.86e-73 | 238 |
| MS.gene23145.t1 | MTR_0275s0010 | 45.000 | 260 | 97 | 4 | 166 | 405 | 1 | 234 | 2.19e-69 | 219 |
| MS.gene23145.t1 | MTR_0590s0010 | 48.598 | 214 | 87 | 4 | 202 | 403 | 5 | 207 | 2.12e-60 | 200 |
| MS.gene23145.t1 | MTR_1034s0010 | 55.882 | 68 | 30 | 0 | 91 | 158 | 91 | 158 | 1.80e-21 | 90.9 |
| MS.gene23145.t1 | MTR_7g037420 | 30.366 | 191 | 117 | 5 | 95 | 270 | 10 | 199 | 5.55e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23145.t1 | AT1G09420 | 61.882 | 425 | 116 | 9 | 13 | 405 | 53 | 463 | 9.65e-174 | 499 |
| MS.gene23145.t1 | AT1G09420 | 60.230 | 435 | 117 | 10 | 13 | 405 | 53 | 473 | 1.61e-169 | 489 |
| MS.gene23145.t1 | AT5G13110 | 48.266 | 346 | 150 | 3 | 80 | 405 | 94 | 430 | 3.10e-113 | 343 |
| MS.gene23145.t1 | AT1G24280 | 50.453 | 331 | 135 | 3 | 95 | 405 | 112 | 433 | 4.31e-113 | 343 |
| MS.gene23145.t1 | AT5G35790 | 48.649 | 333 | 142 | 3 | 93 | 405 | 88 | 411 | 5.14e-110 | 335 |
| MS.gene23145.t1 | AT3G27300 | 40.828 | 338 | 165 | 9 | 90 | 405 | 26 | 350 | 1.47e-75 | 244 |
| MS.gene23145.t1 | AT3G27300 | 40.828 | 338 | 165 | 9 | 90 | 405 | 26 | 350 | 1.47e-75 | 244 |
| MS.gene23145.t1 | AT3G27300 | 40.828 | 338 | 165 | 9 | 90 | 405 | 26 | 350 | 1.47e-75 | 244 |
| MS.gene23145.t1 | AT3G27300 | 41.124 | 338 | 164 | 8 | 90 | 405 | 80 | 404 | 4.39e-75 | 244 |
| MS.gene23145.t1 | AT3G27300 | 41.716 | 338 | 162 | 9 | 90 | 405 | 97 | 421 | 5.91e-75 | 244 |
| MS.gene23145.t1 | AT5G40760 | 40.122 | 329 | 167 | 7 | 96 | 405 | 32 | 349 | 9.80e-73 | 236 |
| MS.gene23145.t1 | AT5G40760 | 40.122 | 329 | 167 | 7 | 96 | 405 | 32 | 349 | 9.80e-73 | 236 |
Find 0 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATTAAAAATTTAAA+AGG | + | 51786:1541-1560 | MS.gene23145:intergenic | 0.0% |
| !! | TATATATTAAAAATTTAAAA+GGG | + | 51786:1540-1559 | MS.gene23145:intergenic | 0.0% |
| !! | ATATAATATGAAAATCTATA+TGG | - | 51786:1007-1026 | MS.gene23145:intron | 10.0% |
| !! | CTAACAAAAAATAAATAAAT+TGG | + | 51786:1472-1491 | MS.gene23145:intergenic | 10.0% |
| !! | TTATTAAAAAAAAAAAAGAG+TGG | - | 51786:1064-1083 | MS.gene23145:intron | 10.0% |
| !!! | ATTTATTTATTTTTTGTTAG+TGG | - | 51786:1472-1491 | MS.gene23145:intron | 10.0% |
| !! | AAAAAAGAAATAAGGAAAAT+TGG | - | 51786:3653-3672 | MS.gene23145:CDS | 15.0% |
| !! | AAAGCATAAAAAAAGAAATA+AGG | - | 51786:3645-3664 | MS.gene23145:CDS | 15.0% |
| !! | TTATTTACAAAATTGGAATT+GGG | + | 51786:1898-1917 | MS.gene23145:intergenic | 15.0% |
| !! | TTTATTTACAAAATTGGAAT+TGG | + | 51786:1899-1918 | MS.gene23145:intergenic | 15.0% |
| !!! | CCAATAAAAAATATTTTGTT+CGG | - | 51786:2647-2666 | MS.gene23145:intron | 15.0% |
| !! | AATAAACTGAAAACAACTTA+TGG | - | 51786:783-802 | MS.gene23145:intron | 20.0% |
| !! | ACACATTAATGTAAAGTAAA+AGG | + | 51786:2037-2056 | MS.gene23145:intergenic | 20.0% |
| !! | ATATAAAATCTTCCAATTTC+AGG | - | 51786:2058-2077 | MS.gene23145:CDS | 20.0% |
| !! | ATATATAGAAGGTAGTAATT+TGG | + | 51786:1704-1723 | MS.gene23145:intergenic | 20.0% |
| !! | CAAACATATCATAGTATATA+TGG | - | 51786:889-908 | MS.gene23145:intron | 20.0% |
| !! | GTTGTTGTATTGAAATAATT+CGG | - | 51786:3595-3614 | MS.gene23145:CDS | 20.0% |
| !! | TAACATTACGTAAATAGAAA+TGG | + | 51786:569-588 | MS.gene23145:intergenic | 20.0% |
| !! | TAGTAGAATCAAATATCAAA+GGG | + | 51786:2301-2320 | MS.gene23145:intergenic | 20.0% |
| !! | TATATAGAAGGTAGTAATTT+GGG | + | 51786:1703-1722 | MS.gene23145:intergenic | 20.0% |
| !!! | AAAGTACAATATCGATTAAT+TGG | + | 51786:3740-3759 | MS.gene23145:intergenic | 20.0% |
| !!! | AACTTTTTAAGATGTTAAAG+TGG | - | 51786:4250-4269 | MS.gene23145:intron | 20.0% |
| !!! | AAGTACAATATCGATTAATT+GGG | + | 51786:3739-3758 | MS.gene23145:intergenic | 20.0% |
| !!! | ATTTTCTGTTTCAAATGATA+TGG | + | 51786:1927-1946 | MS.gene23145:intergenic | 20.0% |
| !!! | CCGAACAAAATATTTTTTAT+TGG | + | 51786:2650-2669 | MS.gene23145:intergenic | 20.0% |
| !!! | TTTTCTGTTTCAAATGATAT+GGG | + | 51786:1926-1945 | MS.gene23145:intergenic | 20.0% |
| ! | AAAGATTCACTTCATATGTT+GGG | - | 51786:1366-1385 | MS.gene23145:intron | 25.0% |
| ! | AAATTGGTGAATTCATGTAA+AGG | - | 51786:3669-3688 | MS.gene23145:CDS | 25.0% |
| ! | AATATAGACTCACATTACAT+TGG | - | 51786:1400-1419 | MS.gene23145:intron | 25.0% |
| ! | AATCACTTCAAGAATGTAAA+AGG | - | 51786:479-498 | MS.gene23145:CDS | 25.0% |
| ! | ACAGAAATTGCATTAAGAAT+AGG | + | 51786:2914-2933 | MS.gene23145:intergenic | 25.0% |
| ! | AGAAGATATTCGAAATGAAA+AGG | - | 51786:3214-3233 | MS.gene23145:CDS | 25.0% |
| ! | AGATTTGATCTGCTATAAAT+TGG | + | 51786:1828-1847 | MS.gene23145:intergenic | 25.0% |
| ! | ATACATAATAACTGCTGTTA+AGG | - | 51786:4225-4244 | MS.gene23145:intron | 25.0% |
| ! | ATACATGACATTAATCATCA+TGG | + | 51786:3478-3497 | MS.gene23145:intergenic | 25.0% |
| ! | ATATCATGAGTTTATATAGC+AGG | + | 51786:1444-1463 | MS.gene23145:intergenic | 25.0% |
| ! | ATGTTTCTTATCTTGAAATC+TGG | - | 51786:623-642 | MS.gene23145:intron | 25.0% |
| ! | ATTCTTAATGCAATTTCTGT+AGG | - | 51786:2914-2933 | MS.gene23145:intron | 25.0% |
| ! | CAGAAAATTATAAAGCTTTC+TGG | - | 51786:1939-1958 | MS.gene23145:intron | 25.0% |
| ! | CATTGAAGTTTAGAAATTCA+GGG | + | 51786:2879-2898 | MS.gene23145:intergenic | 25.0% |
| ! | GAATGGAAACTATATATAGA+AGG | + | 51786:1715-1734 | MS.gene23145:intergenic | 25.0% |
| ! | GCAAAAATAACTATCAGTAT+AGG | - | 51786:3832-3851 | MS.gene23145:intron | 25.0% |
| ! | GGGCAATTTATTTACAAAAT+TGG | + | 51786:1905-1924 | MS.gene23145:intergenic | 25.0% |
| ! | GTAGTAGAATCAAATATCAA+AGG | + | 51786:2302-2321 | MS.gene23145:intergenic | 25.0% |
| ! | GTATGATGAATCTAAAAAGA+CGG | + | 51786:3793-3812 | MS.gene23145:intergenic | 25.0% |
| ! | TAACAAGATATTACCTTGTT+TGG | - | 51786:668-687 | MS.gene23145:intron | 25.0% |
| ! | TCATAGACAAAATCTTTAGT+AGG | - | 51786:1733-1752 | MS.gene23145:intron | 25.0% |
| ! | TCATTGAAGTTTAGAAATTC+AGG | + | 51786:2880-2899 | MS.gene23145:intergenic | 25.0% |
| ! | TGTCATGTATTGAAATCATT+CGG | - | 51786:3488-3507 | MS.gene23145:intron | 25.0% |
| ! | TGTTACGTATTGAAATCATT+CGG | - | 51786:3345-3364 | MS.gene23145:intron | 25.0% |
| ! | TTTCTGTTTCAAATGATATG+GGG | + | 51786:1925-1944 | MS.gene23145:intergenic | 25.0% |
| !! | AAACATGATTAGTCAAGAAA+AGG | - | 51786:3385-3404 | MS.gene23145:intron | 25.0% |
| !! | ACATTTTTGACATGTCAAAT+AGG | + | 51786:4135-4154 | MS.gene23145:intergenic | 25.0% |
| !! | CAAATTTTTCTCTCAAATAC+CGG | + | 51786:2625-2644 | MS.gene23145:intergenic | 25.0% |
| !! | CTAAAGATTTTGTCTATGAA+TGG | + | 51786:1732-1751 | MS.gene23145:intergenic | 25.0% |
| !! | TATCTAAAATATTGTTGCCA+TGG | - | 51786:3315-3334 | MS.gene23145:intron | 25.0% |
| AAATCTGTTGAATTGTACCT+CGG | + | 51786:1321-1340 | MS.gene23145:intergenic | 30.0% | |
| AACTTACATAGATAATGTGC+AGG | - | 51786:2824-2843 | MS.gene23145:intron | 30.0% | |
| AATCCTTCATATGCTAACTT+GGG | - | 51786:1764-1783 | MS.gene23145:intron | 30.0% | |
| AATGTATTTGTGAGACTCAT+TGG | + | 51786:839-858 | MS.gene23145:intergenic | 30.0% | |
| ACAGCTTATTATCTACTTCA+GGG | - | 51786:2320-2339 | MS.gene23145:CDS | 30.0% | |
| ACGTAAATAGAAATGGAGAT+TGG | + | 51786:562-581 | MS.gene23145:intergenic | 30.0% | |
| AGAAAGGTAGAAAATCCTAT+TGG | + | 51786:2357-2376 | MS.gene23145:intergenic | 30.0% | |
| AGCTAATTACTTGTACTACT+TGG | + | 51786:4323-4342 | MS.gene23145:intergenic | 30.0% | |
| ATAACAAGTGAATGAAGATG+TGG | + | 51786:957-976 | MS.gene23145:intergenic | 30.0% | |
| ATAATAATCGAGAAGCCATT+TGG | - | 51786:2452-2471 | MS.gene23145:CDS | 30.0% | |
| ATACGTAACATTAATCACCA+TGG | + | 51786:3335-3354 | MS.gene23145:intergenic | 30.0% | |
| ATCATTCGGATTGTAACATA+TGG | - | 51786:3502-3521 | MS.gene23145:intron | 30.0% | |
| ATGAATCTAAAAAGACGGAA+CGG | + | 51786:3788-3807 | MS.gene23145:intergenic | 30.0% | |
| ATGATAGCAATACAAAGTGA+AGG | + | 51786:1224-1243 | MS.gene23145:intergenic | 30.0% | |
| ATGCCAATCAGATAAAACAA+GGG | + | 51786:2856-2875 | MS.gene23145:intergenic | 30.0% | |
| ATTTAGTAGTTAATACGCGA+AGG | + | 51786:4088-4107 | MS.gene23145:intergenic | 30.0% | |
| CAAACTCAGTAAGTTGTTTA+AGG | + | 51786:3281-3300 | MS.gene23145:intergenic | 30.0% | |
| CAAAGATTCACTTCATATGT+TGG | - | 51786:1365-1384 | MS.gene23145:intron | 30.0% | |
| CGTAATTTGATCAATGTAGT+CGG | - | 51786:3545-3564 | MS.gene23145:CDS | 30.0% | |
| GCAGTTATTATGTATAGCAA+TGG | + | 51786:4220-4239 | MS.gene23145:intergenic | 30.0% | |
| GTGTATTTGTGATTTAAGCA+TGG | + | 51786:4198-4217 | MS.gene23145:intergenic | 30.0% | |
| TAATGTTCCCATAGATAGTA+AGG | - | 51786:1124-1143 | MS.gene23145:intron | 30.0% | |
| TACAGCTTATTATCTACTTC+AGG | - | 51786:2319-2338 | MS.gene23145:CDS | 30.0% | |
| TAGAATCAAATATCAAAGGG+CGG | + | 51786:2298-2317 | MS.gene23145:intergenic | 30.0% | |
| TCACTTTGTATTGCTATCAT+AGG | - | 51786:1224-1243 | MS.gene23145:intron | 30.0% | |
| TCTATATGGTGAGATGTTAT+AGG | - | 51786:1021-1040 | MS.gene23145:intron | 30.0% | |
| TGGTTTATGATAGAACACTA+TGG | - | 51786:3522-3541 | MS.gene23145:intron | 30.0% | |
| TGTTAATGTCGAAGCAATAA+TGG | + | 51786:1643-1662 | MS.gene23145:intergenic | 30.0% | |
| TTATTTGCACTCTACTATAG+TGG | - | 51786:1287-1306 | MS.gene23145:intron | 30.0% | |
| TTGAAAATCTCACAGTTCTA+AGG | - | 51786:2766-2785 | MS.gene23145:intron | 30.0% | |
| TTGAGGAAAAGCAACTATAT+AGG | - | 51786:2525-2544 | MS.gene23145:intron | 30.0% | |
| TTGCATTAAGAATAGGCATT+TGG | + | 51786:2907-2926 | MS.gene23145:intergenic | 30.0% | |
| TTTCATTCAGTAGCAAGTAT+TGG | - | 51786:365-384 | MS.gene23145:CDS | 30.0% | |
| ! | AATATCGATTAATTGGGAAG+GGG | + | 51786:3733-3752 | MS.gene23145:intergenic | 30.0% |
| ! | ACAATATCGATTAATTGGGA+AGG | + | 51786:3735-3754 | MS.gene23145:intergenic | 30.0% |
| ! | CAATATCGATTAATTGGGAA+GGG | + | 51786:3734-3753 | MS.gene23145:intergenic | 30.0% |
| ! | CTCTGCTACTTGATTTATAT+TGG | + | 51786:4408-4427 | MS.gene23145:intergenic | 30.0% |
| ! | GCTGATTTCATAAACTATGA+CGG | - | 51786:748-767 | MS.gene23145:intron | 30.0% |
| ! | TAAAAGGGTAAACATTGACT+AGG | + | 51786:1525-1544 | MS.gene23145:intergenic | 30.0% |
| ! | TACTATCCTTTTATACTGTC+AGG | - | 51786:3810-3829 | MS.gene23145:intron | 30.0% |
| ! | TGTACTACTTGGTGATTAAA+TGG | + | 51786:4312-4331 | MS.gene23145:intergenic | 30.0% |
| ! | TTTAAGATCAATTCGCCAAT+TGG | - | 51786:4360-4379 | MS.gene23145:CDS | 30.0% |
| ! | TTTTTGCCTGACAGTATAAA+AGG | + | 51786:3819-3838 | MS.gene23145:intergenic | 30.0% |
| !!! | GTAGAAAATCCTATTGGTTT+TGG | + | 51786:2351-2370 | MS.gene23145:intergenic | 30.0% |
| AAAATCTTCCAATTTCAGGC+AGG | - | 51786:2062-2081 | MS.gene23145:CDS | 35.0% | |
| AAGATATTGTGTCAGCCTTT+GGG | + | 51786:2495-2514 | MS.gene23145:intergenic | 35.0% | |
| AATCTGTTGAATTGTACCTC+GGG | + | 51786:1320-1339 | MS.gene23145:intergenic | 35.0% | |
| ACAATATTGACCGTATACAG+TGG | + | 51786:2002-2021 | MS.gene23145:intergenic | 35.0% | |
| AGAAGTGACCTTACTATCTA+TGG | + | 51786:1135-1154 | MS.gene23145:intergenic | 35.0% | |
| ATAAATGCGCTATCCAAACA+AGG | + | 51786:684-703 | MS.gene23145:intergenic | 35.0% | |
| ATATCTTCTCTCGAAGTTTG+AGG | - | 51786:2508-2527 | MS.gene23145:intron | 35.0% | |
| ATGACAGATTGAAAGATGCA+TGG | - | 51786:4283-4302 | MS.gene23145:intron | 35.0% | |
| ATGAGCATATGGGTGAAAAT+GGG | + | 51786:2568-2587 | MS.gene23145:intergenic | 35.0% | |
| ATTTCTATAGCTAAGCTGCT+TGG | + | 51786:462-481 | MS.gene23145:intergenic | 35.0% | |
| ATTTGTGTGCATGAGCATAT+GGG | + | 51786:2578-2597 | MS.gene23145:intergenic | 35.0% | |
| CAATATTGACCGTATACAGT+GGG | + | 51786:2001-2020 | MS.gene23145:intergenic | 35.0% | |
| CCAACTCAGTAAGTTGTTTA+AGG | + | 51786:3425-3444 | MS.gene23145:intergenic | 35.0% | |
| CCTTAAACAACTTACTGAGT+TGG | - | 51786:3278-3297 | MS.gene23145:intron | 35.0% | |
| CTGTATACGGTCAATATTGT+AGG | - | 51786:2002-2021 | MS.gene23145:CDS | 35.0% | |
| CTTATCTTGAAATCTGGTAC+TGG | - | 51786:629-648 | MS.gene23145:intron | 35.0% | |
| CTTCCTTGAATACCCAAAAA+TGG | + | 51786:1595-1614 | MS.gene23145:intergenic | 35.0% | |
| GAAGTGACCTTACTATCTAT+GGG | + | 51786:1134-1153 | MS.gene23145:intergenic | 35.0% | |
| GAATCCTTCATATGCTAACT+TGG | - | 51786:1763-1782 | MS.gene23145:intron | 35.0% | |
| GATAGAACACACTACATCAA+TGG | - | 51786:2114-2133 | MS.gene23145:intron | 35.0% | |
| GATGCCAATCAGATAAAACA+AGG | + | 51786:2857-2876 | MS.gene23145:intergenic | 35.0% | |
| GTAAAGAGTTTACACACTAC+AGG | + | 51786:2268-2287 | MS.gene23145:intergenic | 35.0% | |
| TAGTAGAGTGCAAATAAAGC+TGG | + | 51786:1284-1303 | MS.gene23145:intergenic | 35.0% | |
| TATACATTGACAATGCACGA+TGG | - | 51786:4481-4500 | MS.gene23145:CDS | 35.0% | |
| TCATGAGTTTATATAGCAGG+TGG | + | 51786:1441-1460 | MS.gene23145:intergenic | 35.0% | |
| TGATGTAGTGTGTTCTATCA+AGG | + | 51786:2113-2132 | MS.gene23145:intergenic | 35.0% | |
| TTCGAATATCTTCTCCATCA+AGG | + | 51786:3208-3227 | MS.gene23145:intergenic | 35.0% | |
| TTTCCCAAGTTAGCATATGA+AGG | + | 51786:1770-1789 | MS.gene23145:intergenic | 35.0% | |
| TTTCTATAGCTAAGCTGCTT+GGG | + | 51786:461-480 | MS.gene23145:intergenic | 35.0% | |
| ! | ATATCGATTAATTGGGAAGG+GGG | + | 51786:3732-3751 | MS.gene23145:intergenic | 35.0% |
| ! | ATTCACTCAAAAGCACACAA+TGG | + | 51786:4044-4063 | MS.gene23145:intergenic | 35.0% |
| !! | CAAAGTTGATAGTGCTTAGA+TGG | - | 51786:4429-4448 | MS.gene23145:CDS | 35.0% |
| !! | TTCGTTTTTCCCACTGTATA+CGG | - | 51786:1989-2008 | MS.gene23145:CDS | 35.0% |
| !!! | CTGTAGGTCATTTTTATCAG+AGG | - | 51786:2930-2949 | MS.gene23145:intron | 35.0% |
| !!! | GTCATTTTTATCAGAGGACT+TGG | - | 51786:2936-2955 | MS.gene23145:intron | 35.0% |
| AACAATTGCATTGCTTGCCA+TGG | - | 51786:3169-3188 | MS.gene23145:intron | 40.0% | |
| AACCAATATGATCACCTTCC+CGG | + | 51786:2970-2989 | MS.gene23145:intergenic | 40.0% | |
| AACTTGGGAAACTGCTTTCT+AGG | - | 51786:1779-1798 | MS.gene23145:intron | 40.0% | |
| AGAACACACTACATCAATGG+AGG | - | 51786:2117-2136 | MS.gene23145:intron | 40.0% | |
| AGATGATCAATCCTGACAAC+AGG | + | 51786:2729-2748 | MS.gene23145:intergenic | 40.0% | |
| AGGGAAGATCCAAAACCAAT+AGG | - | 51786:2339-2358 | MS.gene23145:CDS | 40.0% | |
| AGGTTCTCTACTAACATCCA+TGG | + | 51786:1204-1223 | MS.gene23145:intergenic | 40.0% | |
| ATCTGTTGAATTGTACCTCG+GGG | + | 51786:1319-1338 | MS.gene23145:intergenic | 40.0% | |
| ATGTAAGTTCGACTCCATAG+CGG | + | 51786:2813-2832 | MS.gene23145:intergenic | 40.0% | |
| ATTCTCATCAACCTGTTGTC+AGG | - | 51786:2715-2734 | MS.gene23145:CDS | 40.0% | |
| CATATGCTCATGCACACAAA+TGG | - | 51786:2577-2596 | MS.gene23145:intron | 40.0% | |
| CATGAGCATATGGGTGAAAA+TGG | + | 51786:2569-2588 | MS.gene23145:intergenic | 40.0% | |
| CATGGCTGTGAACAATATCA+CGG | + | 51786:3142-3161 | MS.gene23145:intergenic | 40.0% | |
| CATTTGTGTGCATGAGCATA+TGG | + | 51786:2579-2598 | MS.gene23145:intergenic | 40.0% | |
| GAAGATATTGTGTCAGCCTT+TGG | + | 51786:2496-2515 | MS.gene23145:intergenic | 40.0% | |
| GAGGTTACGACAACAAACAT+GGG | - | 51786:2136-2155 | MS.gene23145:intron | 40.0% | |
| GGTTCTCTACTAACATCCAT+GGG | + | 51786:1203-1222 | MS.gene23145:intergenic | 40.0% | |
| GTCAGGATTGATCATCTTCT+AGG | - | 51786:2732-2751 | MS.gene23145:CDS | 40.0% | |
| TACAGTGGGAAAAACGAAGA+TGG | + | 51786:1987-2006 | MS.gene23145:intergenic | 40.0% | |
| TAGCGGCTCAAAAACTAGAT+TGG | + | 51786:2796-2815 | MS.gene23145:intergenic | 40.0% | |
| TAGTAAGGTCACTTCTTCCT+TGG | - | 51786:1139-1158 | MS.gene23145:intron | 40.0% | |
| TCTACTAACATCCATGGGAA+AGG | + | 51786:1198-1217 | MS.gene23145:intergenic | 40.0% | |
| TGGCAAGCAATGCAATTGTT+TGG | + | 51786:3169-3188 | MS.gene23145:intergenic | 40.0% | |
| TGTTACCCATGCAGGTATTT+CGG | - | 51786:3101-3120 | MS.gene23145:intron | 40.0% | |
| TTTGTTCGGATGAACCACTT+GGG | - | 51786:2661-2680 | MS.gene23145:intron | 40.0% | |
| ! | ATGCAATTGTTTGGAGCACA+TGG | + | 51786:3160-3179 | MS.gene23145:intergenic | 40.0% |
| ! | GGATTGATCATCTTCTAGGA+AGG | - | 51786:2736-2755 | MS.gene23145:CDS | 40.0% |
| ! | GTATCCACAGTTTGAAACCA+CGG | + | 51786:415-434 | MS.gene23145:intergenic | 40.0% |
| ! | TAATGCTTTGTTACCCATGC+AGG | - | 51786:3093-3112 | MS.gene23145:intron | 40.0% |
| ! | TATGCGATTCCATCCCTTTT+GGG | + | 51786:2435-2454 | MS.gene23145:intergenic | 40.0% |
| ! | TTATGCGATTCCATCCCTTT+TGG | + | 51786:2436-2455 | MS.gene23145:intergenic | 40.0% |
| ! | TTTTGTTCGGATGAACCACT+TGG | - | 51786:2660-2679 | MS.gene23145:intron | 40.0% |
| !! | CATTCAGTAGCAAGTATTGG+AGG | - | 51786:368-387 | MS.gene23145:CDS | 40.0% |
| !! | TCGAAGCAATAATGGATCGT+AGG | + | 51786:1635-1654 | MS.gene23145:intergenic | 40.0% |
| !! | TGTCGAGTTGATCATCAGTA+TGG | - | 51786:1663-1682 | MS.gene23145:CDS | 40.0% |
| !!! | ATCTAGTTTTTGAGCCGCTA+TGG | - | 51786:2796-2815 | MS.gene23145:intron | 40.0% |
| !!! | TGCAGAATGTGGCCATTTTT+GGG | - | 51786:1580-1599 | MS.gene23145:intron | 40.0% |
| !!! | TGGCCATTTTTGGGTATTCA+AGG | - | 51786:1589-1608 | MS.gene23145:intron | 40.0% |
| ACACCAGCATCATCATCATC+AGG | + | 51786:530-549 | MS.gene23145:intergenic | 45.0% | |
| ACATGGGATGTCCTTACTGA+AGG | - | 51786:2152-2171 | MS.gene23145:intron | 45.0% | |
| ACTTTCTGTCGAAGATTCCG+TGG | - | 51786:395-414 | MS.gene23145:intron | 45.0% | |
| AGCAGCGAAATAAGTAGGTG+TGG | + | 51786:4457-4476 | MS.gene23145:intergenic | 45.0% | |
| AGCAGGTGGATGATTCACAT+CGG | + | 51786:1427-1446 | MS.gene23145:intergenic | 45.0% | |
| AGTGCAGCAGCGAAATAAGT+AGG | + | 51786:4462-4481 | MS.gene23145:intergenic | 45.0% | |
| ATCCGGGAAGGTGATCATAT+TGG | - | 51786:2965-2984 | MS.gene23145:intron | 45.0% | |
| ATGACTGTCTTCCAAGAGCA+AGG | - | 51786:3702-3721 | MS.gene23145:intron | 45.0% | |
| ATTGCTATCATAGGAGCCAC+TGG | - | 51786:1233-1252 | MS.gene23145:intron | 45.0% | |
| CAATTTCAGGCAGGATTGTG+GGG | - | 51786:2071-2090 | MS.gene23145:CDS | 45.0% | |
| CATTGCATGTCTGCAGAATG+TGG | - | 51786:1569-1588 | MS.gene23145:intron | 45.0% | |
| CCAATTTCAGGCAGGATTGT+GGG | - | 51786:2070-2089 | MS.gene23145:CDS | 45.0% | |
| GAGATGTTATAGGATGCACG+TGG | - | 51786:1031-1050 | MS.gene23145:intron | 45.0% | |
| GATAGTCAGCACCAAAGTGT+GGG | + | 51786:3954-3973 | MS.gene23145:intergenic | 45.0% | |
| GATTCCGTGGTTTCAAACTG+TGG | - | 51786:408-427 | MS.gene23145:intron | 45.0% | |
| GCAGCGAAATAAGTAGGTGT+GGG | + | 51786:4456-4475 | MS.gene23145:intergenic | 45.0% | |
| GGAGGTTACGACAACAAACA+TGG | - | 51786:2135-2154 | MS.gene23145:intron | 45.0% | |
| TAAGCTGCTTGGGATGTTGA+AGG | + | 51786:451-470 | MS.gene23145:intergenic | 45.0% | |
| TCCAATTTCAGGCAGGATTG+TGG | - | 51786:2069-2088 | MS.gene23145:CDS | 45.0% | |
| TCTTCTCCATCAAGGCTAAC+TGG | + | 51786:3200-3219 | MS.gene23145:intergenic | 45.0% | |
| TGATAGTCAGCACCAAAGTG+TGG | + | 51786:3955-3974 | MS.gene23145:intergenic | 45.0% | |
| TGGCCAAGAATGACATCCTT+GGG | + | 51786:4388-4407 | MS.gene23145:intergenic | 45.0% | |
| TGGGTGAAAATGGGAGAAGA+AGG | + | 51786:2559-2578 | MS.gene23145:intergenic | 45.0% | |
| TTGACAATGCACGATGGATG+AGG | - | 51786:4487-4506 | MS.gene23145:CDS | 45.0% | |
| TTGATGCTCTCTCTTCCCAA+AGG | - | 51786:2477-2496 | MS.gene23145:CDS | 45.0% | |
| TTGGCCAAGAATGACATCCT+TGG | + | 51786:4389-4408 | MS.gene23145:intergenic | 45.0% | |
| TTTGCTGCAAACAAGTCCCT+TGG | - | 51786:1172-1191 | MS.gene23145:intron | 45.0% | |
| ! | CTACCTGATGATGATGATGC+TGG | - | 51786:524-543 | MS.gene23145:intron | 45.0% |
| ! | GGACTTGTTTGCAGCAAAGA+TGG | + | 51786:1170-1189 | MS.gene23145:intergenic | 45.0% |
| ! | TATTTCTGAGTGTGCCCAAG+TGG | + | 51786:2678-2697 | MS.gene23145:intergenic | 45.0% |
| !! | ACGTCCAAAAGTGCTTCTTG+TGG | + | 51786:2383-2402 | MS.gene23145:intergenic | 45.0% |
| !! | AGACTCATTGGTAGTGCTTG+TGG | + | 51786:827-846 | MS.gene23145:intergenic | 45.0% |
| !! | CTGCAGAATGTGGCCATTTT+TGG | - | 51786:1579-1598 | MS.gene23145:intron | 45.0% |
| !! | GAGAGAGCATCAAAGCCAAA+TGG | + | 51786:2470-2489 | MS.gene23145:intergenic | 45.0% |
| !!! | GCGCCCTTGTTTTATCTGAT+TGG | - | 51786:2850-2869 | MS.gene23145:intron | 45.0% |
| !!! | TGTGCCACAAGAAGCACTTT+TGG | - | 51786:2376-2395 | MS.gene23145:CDS | 45.0% |
| AAAAGACGGAACGGATCAGC+AGG | + | 51786:3779-3798 | MS.gene23144:intergenic | 50.0% | |
| AACATCCATGGGAAAGGCCA+AGG | + | 51786:1192-1211 | MS.gene23145:intergenic | 50.0% | |
| AAGCAGTGCTCAGACCCAAA+AGG | - | 51786:2418-2437 | MS.gene23145:CDS | 50.0% | |
| AAGGCTAACTGGTGGTTCCA+TGG | + | 51786:3189-3208 | MS.gene23145:intergenic | 50.0% | |
| AATTCGCCAATTGGAGCCCA+AGG | - | 51786:4369-4388 | MS.gene23145:CDS | 50.0% | |
| ACATCCATGGGAAAGGCCAA+GGG | + | 51786:1191-1210 | MS.gene23145:intergenic | 50.0% | |
| AGCAGTGCTCAGACCCAAAA+GGG | - | 51786:2419-2438 | MS.gene23145:CDS | 50.0% | |
| AGCCACCGAAATACCTGCAT+GGG | + | 51786:3109-3128 | MS.gene23145:intergenic | 50.0% | |
| ATGTAGTCGGCACCACTTAG+TGG | - | 51786:3558-3577 | MS.gene23145:CDS | 50.0% | |
| CAGCAAAGATGGAGACTCCA+AGG | + | 51786:1159-1178 | MS.gene23145:intergenic | 50.0% | |
| CATGCACACAAATGGATGCG+TGG | - | 51786:2585-2604 | MS.gene23145:intron | 50.0% | |
| CCCACAATCCTGCCTGAAAT+TGG | + | 51786:2073-2092 | MS.gene23145:intergenic | 50.0% | |
| CCTATCGTGCACTGGGAAAA+AGG | + | 51786:3991-4010 | MS.gene23145:intergenic | 50.0% | |
| GAGCCCAAGGATGTCATTCT+TGG | - | 51786:4382-4401 | MS.gene23145:CDS | 50.0% | |
| GCACTTGAGCAACAGAATGC+CGG | + | 51786:4016-4035 | MS.gene23145:intergenic | 50.0% | |
| GCAGGTATTTCGGTGGCTAT+GGG | - | 51786:3111-3130 | MS.gene23145:intron | 50.0% | |
| GTCCTTACTGAAGGCCAGAA+TGG | - | 51786:2161-2180 | MS.gene23145:intron | 50.0% | |
| GTGCTTCTTGTGGCACAGAA+AGG | + | 51786:2373-2392 | MS.gene23145:intergenic | 50.0% | |
| TACCCATGCAGGTATTTCGG+TGG | - | 51786:3104-3123 | MS.gene23145:intron | 50.0% | |
| TACCTCGATCTGCTCCATTC+TGG | + | 51786:2178-2197 | MS.gene23145:intergenic | 50.0% | |
| TAGCCACCGAAATACCTGCA+TGG | + | 51786:3110-3129 | MS.gene23145:intergenic | 50.0% | |
| TCAAGCCTTACCCCACTAAG+TGG | + | 51786:3573-3592 | MS.gene23145:intergenic | 50.0% | |
| TCTCCATCAAGGCTAACTGG+TGG | + | 51786:3197-3216 | MS.gene23145:intergenic | 50.0% | |
| TGACATCCTTGGGCTCCAAT+TGG | + | 51786:4378-4397 | MS.gene23145:intergenic | 50.0% | |
| TGCAGGTATTTCGGTGGCTA+TGG | - | 51786:3110-3129 | MS.gene23145:intron | 50.0% | |
| TGTAGTCGGCACCACTTAGT+GGG | - | 51786:3559-3578 | MS.gene23145:CDS | 50.0% | |
| ! | CCTTTTTCCCAGTGCACGAT+AGG | - | 51786:3988-4007 | MS.gene23145:intron | 50.0% |
| ! | CTCCATTCTGGCCTTCAGTA+AGG | + | 51786:2166-2185 | MS.gene23145:intergenic | 50.0% |
| !! | GAACCACCAGTTAGCCTTGA+TGG | - | 51786:3191-3210 | MS.gene23145:CDS | 50.0% |
| AAGGGGGAAGTCCTTGCTCT+TGG | + | 51786:3716-3735 | MS.gene23145:intergenic | 55.0% | |
| AGAGGACTTGGCTGTGCATC+CGG | - | 51786:2948-2967 | MS.gene23145:intron | 55.0% | |
| CACACAAATGGATGCGTGGC+TGG | - | 51786:2589-2608 | MS.gene23145:intron | 55.0% | |
| CTATAGTGGCTTTCTCCCCG+AGG | - | 51786:1301-1320 | MS.gene23145:intron | 55.0% | |
| GTAGTCGGCACCACTTAGTG+GGG | - | 51786:3560-3579 | MS.gene23145:CDS | 55.0% | |
| GTGCTCAGACCCAAAAGGGA+TGG | - | 51786:2423-2442 | MS.gene23145:CDS | 55.0% | |
| ! | AAGTCCCTTGGCCTTTCCCA+TGG | - | 51786:1184-1203 | MS.gene23145:intron | 55.0% |
| !! | GTGCTGACTGACCCACACTT+TGG | - | 51786:3940-3959 | MS.gene23145:intron | 55.0% |
| !! | TGGGGCACTTTGAAACACGC+AGG | - | 51786:3891-3910 | MS.gene23145:intron | 55.0% |
| ACTTGGCTGTGCATCCGGGA+AGG | - | 51786:2953-2972 | MS.gene23145:intron | 60.0% | |
| AGCCACTGGTGAGCTTGCGA+GGG | - | 51786:1247-1266 | MS.gene23145:intron | 60.0% | |
| CCACAGTGCCATCGACACCT+CGG | + | 51786:3874-3893 | MS.gene23145:intergenic | 60.0% | |
| CGGCACCACTTAGTGGGGTA+AGG | - | 51786:3565-3584 | MS.gene23145:CDS | 60.0% | |
| GAGGACTTGGCTGTGCATCC+GGG | - | 51786:2949-2968 | MS.gene23145:intron | 60.0% | |
| GCTGTGACATTCCAGCACCG+AGG | - | 51786:3854-3873 | MS.gene23145:intron | 60.0% | |
| GGCCAGAATGGAGCAGATCG+AGG | - | 51786:2173-2192 | MS.gene23145:intron | 60.0% | |
| TCCCAGTGCACGATAGGTGC+CGG | - | 51786:3994-4013 | MS.gene23145:intron | 60.0% | |
| ! | GGATGCGTGGCTGGTCGATT+TGG | - | 51786:2598-2617 | MS.gene23145:intron | 60.0% |
| !! | CGAGGTGTCGATGGCACTGT+GGG | - | 51786:3872-3891 | MS.gene23145:intron | 60.0% |
| !! | CGTGGCTGGTCGATTTGGTC+CGG | - | 51786:2603-2622 | MS.gene23145:intron | 60.0% |
| !! | GAGGTGTCGATGGCACTGTG+GGG | - | 51786:3873-3892 | MS.gene23145:intron | 60.0% |
| !! | TTCCAGCACCGAGGTGTCGA+TGG | - | 51786:3863-3882 | MS.gene23145:intron | 60.0% |
| CCACTGGTGAGCTTGCGAGG+GGG | - | 51786:1249-1268 | MS.gene23145:intron | 65.0% | |
| GAGCCACTGGTGAGCTTGCG+AGG | - | 51786:1246-1265 | MS.gene23145:intron | 65.0% | |
| GCCACTGGTGAGCTTGCGAG+GGG | - | 51786:1248-1267 | MS.gene23145:intron | 65.0% | |
| GCCGGCACCTATCGTGCACT+GGG | + | 51786:3998-4017 | MS.gene23145:intergenic | 65.0% | |
| TGCCGGCACCTATCGTGCAC+TGG | + | 51786:3999-4018 | MS.gene23145:intergenic | 65.0% | |
| ! | TGCCATCGACACCTCGGTGC+TGG | + | 51786:3868-3887 | MS.gene23145:intergenic | 65.0% |
| !! | CCGAGGTGTCGATGGCACTG+TGG | - | 51786:3871-3890 | MS.gene23145:intron | 65.0% |
| CCCCCTCGCAAGCTCACCAG+TGG | + | 51786:1252-1271 | MS.gene23145:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51786 | gene | 350 | 4506 | 350 | ID=MS.gene23145 |
| 51786 | mRNA | 350 | 4506 | 350 | ID=MS.gene23145.t1;Parent=MS.gene23145 |
| 51786 | exon | 4311 | 4506 | 4311 | ID=MS.gene23145.t1.exon1;Parent=MS.gene23145.t1 |
| 51786 | CDS | 4311 | 4506 | 4311 | ID=cds.MS.gene23145.t1;Parent=MS.gene23145.t1 |
| 51786 | exon | 3534 | 3718 | 3534 | ID=MS.gene23145.t1.exon2;Parent=MS.gene23145.t1 |
| 51786 | CDS | 3534 | 3718 | 3534 | ID=cds.MS.gene23145.t1;Parent=MS.gene23145.t1 |
| 51786 | exon | 3177 | 3271 | 3177 | ID=MS.gene23145.t1.exon3;Parent=MS.gene23145.t1 |
| 51786 | CDS | 3177 | 3271 | 3177 | ID=cds.MS.gene23145.t1;Parent=MS.gene23145.t1 |
| 51786 | exon | 2662 | 2776 | 2662 | ID=MS.gene23145.t1.exon4;Parent=MS.gene23145.t1 |
| 51786 | CDS | 2662 | 2776 | 2662 | ID=cds.MS.gene23145.t1;Parent=MS.gene23145.t1 |
| 51786 | exon | 2310 | 2515 | 2310 | ID=MS.gene23145.t1.exon5;Parent=MS.gene23145.t1 |
| 51786 | CDS | 2310 | 2515 | 2310 | ID=cds.MS.gene23145.t1;Parent=MS.gene23145.t1 |
| 51786 | exon | 1985 | 2119 | 1985 | ID=MS.gene23145.t1.exon6;Parent=MS.gene23145.t1 |
| 51786 | CDS | 1985 | 2119 | 1985 | ID=cds.MS.gene23145.t1;Parent=MS.gene23145.t1 |
| 51786 | exon | 1882 | 1920 | 1882 | ID=MS.gene23145.t1.exon7;Parent=MS.gene23145.t1 |
| 51786 | CDS | 1882 | 1920 | 1882 | ID=cds.MS.gene23145.t1;Parent=MS.gene23145.t1 |
| 51786 | exon | 1621 | 1741 | 1621 | ID=MS.gene23145.t1.exon8;Parent=MS.gene23145.t1 |
| 51786 | CDS | 1621 | 1741 | 1621 | ID=cds.MS.gene23145.t1;Parent=MS.gene23145.t1 |
| 51786 | exon | 438 | 504 | 438 | ID=MS.gene23145.t1.exon9;Parent=MS.gene23145.t1 |
| 51786 | CDS | 438 | 504 | 438 | ID=cds.MS.gene23145.t1;Parent=MS.gene23145.t1 |
| 51786 | exon | 350 | 408 | 350 | ID=MS.gene23145.t1.exon10;Parent=MS.gene23145.t1 |
| 51786 | CDS | 350 | 408 | 350 | ID=cds.MS.gene23145.t1;Parent=MS.gene23145.t1 |
| Gene Sequence |
| Protein sequence |
