Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23538.t1 | XP_003625418.1 | 96.3 | 490 | 17 | 1 | 1 | 489 | 1 | 490 | 1.70E-259 | 904.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23538.t1 | Q9SVT8 | 79.2 | 481 | 95 | 2 | 2 | 477 | 3 | 483 | 4.8e-210 | 731.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23538.t1 | G7KYH5 | 96.3 | 490 | 17 | 1 | 1 | 489 | 1 | 490 | 1.2e-259 | 904.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07605 | MS.gene23538 | PPI |
| MS.gene058775 | MS.gene23538 | PPI |
| MS.gene005054 | MS.gene23538 | PPI |
| MS.gene005052 | MS.gene23538 | PPI |
| MS.gene74897 | MS.gene23538 | PPI |
| MS.gene058774 | MS.gene23538 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23538.t1 | MTR_7g098930 | 96.122 | 490 | 18 | 1 | 1 | 489 | 1 | 490 | 0.0 | 934 |
| MS.gene23538.t1 | MTR_7g113340 | 90.593 | 489 | 46 | 0 | 1 | 489 | 1 | 489 | 0.0 | 889 |
| MS.gene23538.t1 | MTR_1g045550 | 73.673 | 490 | 127 | 2 | 1 | 489 | 1 | 489 | 0.0 | 747 |
| MS.gene23538.t1 | MTR_1g079760 | 74.029 | 489 | 121 | 3 | 1 | 485 | 1 | 487 | 0.0 | 715 |
| MS.gene23538.t1 | MTR_3g463730 | 67.117 | 444 | 141 | 4 | 41 | 482 | 8 | 448 | 0.0 | 588 |
| MS.gene23538.t1 | MTR_7g115050 | 28.101 | 395 | 231 | 14 | 103 | 477 | 86 | 447 | 7.78e-22 | 98.6 |
| MS.gene23538.t1 | MTR_8g074750 | 26.889 | 450 | 269 | 15 | 47 | 472 | 30 | 443 | 3.11e-19 | 90.9 |
| MS.gene23538.t1 | MTR_1g036410 | 25.499 | 451 | 277 | 12 | 47 | 472 | 24 | 440 | 3.17e-18 | 87.4 |
| MS.gene23538.t1 | MTR_7g069640 | 26.146 | 371 | 229 | 11 | 123 | 485 | 129 | 462 | 3.83e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23538.t1 | AT4G28700 | 79.002 | 481 | 96 | 2 | 2 | 477 | 3 | 483 | 0.0 | 747 |
| MS.gene23538.t1 | AT4G13510 | 73.251 | 486 | 126 | 3 | 5 | 489 | 2 | 484 | 0.0 | 744 |
| MS.gene23538.t1 | AT3G24290 | 74.843 | 477 | 117 | 2 | 3 | 479 | 4 | 477 | 0.0 | 734 |
| MS.gene23538.t1 | AT3G24300 | 73.640 | 478 | 122 | 3 | 3 | 479 | 4 | 478 | 0.0 | 725 |
| MS.gene23538.t1 | AT1G64780 | 74.675 | 462 | 111 | 4 | 27 | 484 | 32 | 491 | 0.0 | 714 |
| MS.gene23538.t1 | AT2G38290 | 26.134 | 463 | 290 | 12 | 47 | 488 | 20 | 451 | 6.03e-16 | 80.5 |
| MS.gene23538.t1 | AT2G38290 | 28.142 | 366 | 214 | 12 | 135 | 488 | 7 | 335 | 1.42e-13 | 72.4 |
Find 106 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACATTTGGTTCAAATTT+TGG | 0.092893 | 7.3:+13345157 | MS.gene23538:CDS |
| TATTTCAGTTGCACGTTTCT+TGG | 0.217407 | 7.3:-13345339 | None:intergenic |
| CAATATGTTAAAGAAGTTTA+TGG | 0.222489 | 7.3:+13345077 | MS.gene23538:CDS |
| CAATAGTTGCGCATTGGTTT+TGG | 0.263486 | 7.3:+13344412 | MS.gene23538:CDS |
| GCAGCTCTCACTACTTTGTT+TGG | 0.267595 | 7.3:+13344795 | MS.gene23538:CDS |
| CATTTAGTTGGCGCAGTTGC+TGG | 0.280435 | 7.3:+13344522 | MS.gene23538:CDS |
| TTCGGGTTTGCCTTTGCTTT+CGG | 0.288803 | 7.3:+13344189 | MS.gene23538:CDS |
| TAGTGGTACTTTAGTTGTTA+TGG | 0.289328 | 7.3:+13344623 | MS.gene23538:CDS |
| TGATCAAATCTACCAATTCT+TGG | 0.296521 | 7.3:-13344570 | None:intergenic |
| GGGAGGTGGTGGAAGATTAT+TGG | 0.298602 | 7.3:+13345133 | MS.gene23538:CDS |
| CGTTTCTTGGAACGTCCTTC+AGG | 0.301303 | 7.3:-13345326 | None:intergenic |
| TGTTTGGGTGAGTGTTACTA+TGG | 0.317455 | 7.3:+13345187 | MS.gene23538:CDS |
| GATGTTTGTAATGGTTTGTT+AGG | 0.319352 | 7.3:+13344852 | MS.gene23538:CDS |
| CTTGAAGCTGCTCAACTTCA+TGG | 0.324413 | 7.3:+13345005 | MS.gene23538:CDS |
| AAGATTATTGGCTGCACATT+TGG | 0.325570 | 7.3:+13345145 | MS.gene23538:CDS |
| TATGGTCAATGGAGTGCTAT+TGG | 0.327941 | 7.3:+13344735 | MS.gene23538:CDS |
| CAAAACCAATGCGCAACTAT+TGG | 0.341333 | 7.3:-13344411 | None:intergenic |
| AGGCCTTATGGTTTGTTGTT+GGG | 0.343846 | 7.3:+13345113 | MS.gene23538:CDS |
| TGTGGTGTTGTTCATTTAGT+TGG | 0.344179 | 7.3:+13344510 | MS.gene23538:CDS |
| GGTTCACCAGATAGGCCTTA+TGG | 0.344593 | 7.3:+13345101 | MS.gene23538:CDS |
| GCTTTCGGCACACCTTCTAA+TGG | 0.348115 | 7.3:+13344204 | MS.gene23538:CDS |
| AACAAACCATAAGGCCTATC+TGG | 0.363039 | 7.3:-13345107 | None:intergenic |
| AGTGGTACTTTAGTTGTTAT+GGG | 0.366370 | 7.3:+13344624 | MS.gene23538:CDS |
| CAGCTCTCACTACTTTGTTT+GGG | 0.373878 | 7.3:+13344796 | MS.gene23538:CDS |
| AACGTTTGCAAACAGGTCAT+TGG | 0.375052 | 7.3:+13344820 | MS.gene23538:CDS |
| GAAGCCGTTGCAGATGTATT+CGG | 0.389455 | 7.3:-13343968 | None:intergenic |
| TTACTTTGGTTTGGTTGGTA+TGG | 0.390915 | 7.3:+13344654 | MS.gene23538:CDS |
| ATTGGTTAACATAATATTCA+TGG | 0.394480 | 7.3:-13344127 | None:intergenic |
| TGAAGAAGAGATGGCTGGAT+TGG | 0.397610 | 7.3:+13345259 | MS.gene23538:CDS |
| TAGGCCTTATGGTTTGTTGT+TGG | 0.399686 | 7.3:+13345112 | MS.gene23538:CDS |
| GTTGTTCTGTTGTTGATCCA+TGG | 0.400973 | 7.3:+13344898 | MS.gene23538:CDS |
| TTCATGGTGGTTGTGGCACA+TGG | 0.403730 | 7.3:+13345021 | MS.gene23538:CDS |
| TTTGGGAAACGTTTGCAAAC+AGG | 0.404967 | 7.3:+13344813 | MS.gene23538:CDS |
| ACACCTTCTAATGGTTTCAT+TGG | 0.405120 | 7.3:+13344213 | MS.gene23538:CDS |
| GGTTTGTTGTTGGGAGGTGG+TGG | 0.412513 | 7.3:+13345122 | MS.gene23538:CDS |
| TTTCCAATGAAACCATTAGA+AGG | 0.426927 | 7.3:-13344216 | None:intergenic |
| GATGTATTCGGCAGCGGCTG+TGG | 0.428663 | 7.3:-13343956 | None:intergenic |
| TATGGTTTGTTGTTGGGAGG+TGG | 0.435507 | 7.3:+13345119 | MS.gene23538:CDS |
| TTTATGGTGGTTCACCAGAT+AGG | 0.437334 | 7.3:+13345093 | MS.gene23538:CDS |
| CCATGGGCTGCAATTATTTG+CGG | 0.442763 | 7.3:+13344915 | MS.gene23538:CDS |
| TTGATTGAAGGACCAAGAAT+TGG | 0.443702 | 7.3:+13344558 | MS.gene23538:CDS |
| GCTCAACTTCATGGTGGTTG+TGG | 0.443914 | 7.3:+13345014 | MS.gene23538:CDS |
| GGTGAAAGTGGTAATTACTA+TGG | 0.445774 | 7.3:+13344717 | MS.gene23538:CDS |
| ATGGTCAATGGAGTGCTATT+GGG | 0.445910 | 7.3:+13344736 | MS.gene23538:CDS |
| AACTATTGGATAAACTAAAC+CGG | 0.447985 | 7.3:-13344397 | None:intergenic |
| TAGATTTGATCATGAAGGTA+AGG | 0.457000 | 7.3:+13344581 | MS.gene23538:CDS |
| TGCTGATGGTTGGGGTAGTC+CGG | 0.458442 | 7.3:+13344437 | MS.gene23538:CDS |
| TTCATAAATTGAATTTGCTT+AGG | 0.462409 | 7.3:+13345228 | MS.gene23538:CDS |
| TTGTTCTGTTGTTGATCCAT+GGG | 0.462585 | 7.3:+13344899 | MS.gene23538:CDS |
| CATGGTGGTTGTGGCACATG+GGG | 0.465415 | 7.3:+13345023 | MS.gene23538:CDS |
| GTGGAGGTCGGAGGCGGAGC+AGG | 0.470016 | 7.3:-13343908 | None:intergenic |
| TTTAACTAGCCATGGTGGAT+TGG | 0.471431 | 7.3:+13345283 | MS.gene23538:CDS |
| GCTGTGACAACTACATTGGC+TGG | 0.480039 | 7.3:+13344765 | MS.gene23538:CDS |
| GTGGTAATTACTATGGTCAA+TGG | 0.487253 | 7.3:+13344724 | MS.gene23538:CDS |
| AATGTTACTGATGTTTGTAA+TGG | 0.492106 | 7.3:+13344843 | MS.gene23538:CDS |
| GAGAGCGTGGAGGTCGGAGG+CGG | 0.493293 | 7.3:-13343914 | None:intergenic |
| TTGCGGATTTGTTGCTGCGT+GGG | 0.498589 | 7.3:+13344932 | MS.gene23538:CDS |
| GTCAATGAATTTGTTTGCAA+TGG | 0.501078 | 7.3:-13343995 | None:intergenic |
| AATGTTCTTGATGCCGCCAC+TGG | 0.502684 | 7.3:+13344147 | MS.gene23538:CDS |
| GTTTGTAATGGTTTGTTAGG+TGG | 0.503528 | 7.3:+13344855 | MS.gene23538:CDS |
| ATGGTTGGGGTAGTCCGGCT+CGG | 0.503769 | 7.3:+13344442 | MS.gene23538:CDS |
| ATTGGTAGATTTGATCATGA+AGG | 0.517699 | 7.3:+13344576 | MS.gene23538:CDS |
| TGGAGTTTGCACCGCTGCCG+AGG | 0.519424 | 7.3:-13343936 | None:intergenic |
| CCTCCCAACAACAAACCATA+AGG | 0.520192 | 7.3:-13345116 | None:intergenic |
| TCCGACCTCCACGCTCTCCT+CGG | 0.524571 | 7.3:+13343919 | MS.gene23538:CDS |
| TCATGGTGGTTGTGGCACAT+GGG | 0.525963 | 7.3:+13345022 | MS.gene23538:CDS |
| CCTTATGGTTTGTTGTTGGG+AGG | 0.526212 | 7.3:+13345116 | MS.gene23538:CDS |
| GTTCTTGATGCCGCCACTGG+CGG | 0.529079 | 7.3:+13344150 | MS.gene23538:CDS |
| CTCCACGCTCTCCTCGGCAG+CGG | 0.535645 | 7.3:+13343925 | MS.gene23538:CDS |
| AACGTGCAACTGAAATATGA+AGG | 0.545110 | 7.3:+13345345 | MS.gene23538:CDS |
| CACCGCTGCCGAGGAGAGCG+TGG | 0.546466 | 7.3:-13343927 | None:intergenic |
| TTTATCCAATAGTTGCGCAT+TGG | 0.550357 | 7.3:+13344406 | MS.gene23538:CDS |
| CAAGGTAAGCGGAAAAGAGA+AGG | 0.554067 | 7.3:-13344044 | None:intergenic |
| TCACATGAAGAAGAGATGGC+TGG | 0.556577 | 7.3:+13345254 | MS.gene23538:CDS |
| AACGGAACCAGCGCAAAGCA+TGG | 0.565138 | 7.3:-13344091 | None:intergenic |
| CATGGCAAAACCGAGTTGCA+TGG | 0.567366 | 7.3:-13344073 | None:intergenic |
| CCGCAAATAATTGCAGCCCA+TGG | 0.567823 | 7.3:-13344915 | None:intergenic |
| GGATTGGATTTAACTAGCCA+TGG | 0.567834 | 7.3:+13345275 | MS.gene23538:CDS |
| GAGTTCACATGAAGAAGAGA+TGG | 0.574355 | 7.3:+13345250 | MS.gene23538:CDS |
| GTTGCAGATGTATTCGGCAG+CGG | 0.576245 | 7.3:-13343962 | None:intergenic |
| GTTTGGGTGAGTGTTACTAT+GGG | 0.584751 | 7.3:+13345188 | MS.gene23538:CDS |
| GCCGAGGAGAGCGTGGAGGT+CGG | 0.587689 | 7.3:-13343920 | None:intergenic |
| GAGGAGAGCGTGGAGGTCGG+AGG | 0.594655 | 7.3:-13343917 | None:intergenic |
| AGATTTGATCATGAAGGTAA+GGG | 0.600041 | 7.3:+13344582 | MS.gene23538:CDS |
| TATGTTAAAGAAGTTTATGG+TGG | 0.601613 | 7.3:+13345080 | MS.gene23538:CDS |
| AAGATGTTAAGAAAAGAACC+AGG | 0.604124 | 7.3:-13344684 | None:intergenic |
| GTAGGTGTTGTCAACAGCGT+AGG | 0.604804 | 7.3:-13344022 | None:intergenic |
| GACAGCTGTGACAACTACAT+TGG | 0.614425 | 7.3:+13344761 | MS.gene23538:CDS |
| TGAAGTTGAGCAGCTTCAAG+AGG | 0.615625 | 7.3:-13345002 | None:intergenic |
| AGAAGGTGTGCCGAAAGCAA+AGG | 0.615821 | 7.3:-13344199 | None:intergenic |
| TTTGCGGATTTGTTGCTGCG+TGG | 0.617501 | 7.3:+13344931 | MS.gene23538:CDS |
| GGTAAGGGTGTTTCAATGAG+AGG | 0.619487 | 7.3:+13344597 | MS.gene23538:CDS |
| GCTGCAGCAGGAATCACTAG+TGG | 0.625263 | 7.3:+13344318 | MS.gene23538:CDS |
| CCATAATCAAAAGACTGAGA+AGG | 0.626299 | 7.3:-13344264 | None:intergenic |
| TTGGATTTAACTAGCCATGG+TGG | 0.626409 | 7.3:+13345278 | MS.gene23538:CDS |
| GTTTCAATGAGAGGACATAG+TGG | 0.631638 | 7.3:+13344606 | MS.gene23538:CDS |
| CAGTATCATGAAGAGCCTGA+AGG | 0.631950 | 7.3:+13345311 | MS.gene23538:CDS |
| GTAAGCGGAAAAGAGAAGGT+AGG | 0.633933 | 7.3:-13344040 | None:intergenic |
| GTCAATGGAGTGCTATTGGG+AGG | 0.640296 | 7.3:+13344739 | MS.gene23538:CDS |
| AGTGGCGGCATCAAGAACAT+TGG | 0.640439 | 7.3:-13344145 | None:intergenic |
| ATGGTGGTTGTGGCACATGG+GGG | 0.642261 | 7.3:+13345024 | MS.gene23538:CDS |
| AGATGTTAAGAAAAGAACCA+GGG | 0.643491 | 7.3:-13344683 | None:intergenic |
| GAAGCTGCTCAACTTCATGG+TGG | 0.677955 | 7.3:+13345008 | MS.gene23538:CDS |
| ACTGATAAGCCAATCCACCA+TGG | 0.685945 | 7.3:-13345292 | None:intergenic |
| CGCTGCCGAGGAGAGCGTGG+AGG | 0.689136 | 7.3:-13343924 | None:intergenic |
| GCTGCCGAATACATCTGCAA+CGG | 0.700251 | 7.3:+13343964 | MS.gene23538:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATGAAGAATAAAAAACA+AGG | - | chr7.3:13345216-13345235 | None:intergenic | 15.0% |
| !!! | ATTTATTCATCTTTTTTAAC+CGG | + | chr7.3:13344378-13344397 | MS.gene23538:CDS | 15.0% |
| !! | ATTGGTTAACATAATATTCA+TGG | - | chr7.3:13344130-13344149 | None:intergenic | 20.0% |
| !! | CAATATGTTAAAGAAGTTTA+TGG | + | chr7.3:13345077-13345096 | MS.gene23538:CDS | 20.0% |
| !! | CTTAACATCTTAAAAACTTA+TGG | + | chr7.3:13344696-13344715 | MS.gene23538:CDS | 20.0% |
| !!! | GCATTTTTTTCTATATTTTC+GGG | + | chr7.3:13344172-13344191 | MS.gene23538:CDS | 20.0% |
| !!! | GGCATTTTTTTCTATATTTT+CGG | + | chr7.3:13344171-13344190 | MS.gene23538:CDS | 20.0% |
| !!! | TTCATAAATTGAATTTGCTT+AGG | + | chr7.3:13345228-13345247 | MS.gene23538:CDS | 20.0% |
| ! | AACTATTGGATAAACTAAAC+CGG | - | chr7.3:13344400-13344419 | None:intergenic | 25.0% |
| ! | AATGTTACTGATGTTTGTAA+TGG | + | chr7.3:13344843-13344862 | MS.gene23538:CDS | 25.0% |
| ! | TATGTTAAAGAAGTTTATGG+TGG | + | chr7.3:13345080-13345099 | MS.gene23538:CDS | 25.0% |
| ! | TTAAAAACTTATGGTGAAAG+TGG | + | chr7.3:13344705-13344724 | MS.gene23538:CDS | 25.0% |
| !! | ATGGATATTTTCTGTATCAA+TGG | + | chr7.3:13344283-13344302 | MS.gene23538:CDS | 25.0% |
| !! | CATAATATTCATGGTGTTTT+TGG | - | chr7.3:13344121-13344140 | None:intergenic | 25.0% |
| !! | TGGATATTTTCTGTATCAAT+GGG | + | chr7.3:13344284-13344303 | MS.gene23538:CDS | 25.0% |
| !! | TTATGGGAACATTTTTACTT+TGG | + | chr7.3:13344640-13344659 | MS.gene23538:CDS | 25.0% |
| !!! | AAATTTTGGCTATTGTTGTT+TGG | + | chr7.3:13345171-13345190 | MS.gene23538:CDS | 25.0% |
| !!! | AATTTTGGCTATTGTTGTTT+GGG | + | chr7.3:13345172-13345191 | MS.gene23538:CDS | 25.0% |
| !!! | TTCATTGGAAAACACTTTTT+CGG | + | chr7.3:13344228-13344247 | MS.gene23538:CDS | 25.0% |
| AAGATGTTAAGAAAAGAACC+AGG | - | chr7.3:13344687-13344706 | None:intergenic | 30.0% | |
| AGATGTTAAGAAAAGAACCA+GGG | - | chr7.3:13344686-13344705 | None:intergenic | 30.0% | |
| AGATTTGATCATGAAGGTAA+GGG | + | chr7.3:13344582-13344601 | MS.gene23538:CDS | 30.0% | |
| AGTGGTACTTTAGTTGTTAT+GGG | + | chr7.3:13344624-13344643 | MS.gene23538:CDS | 30.0% | |
| ATTGGTAGATTTGATCATGA+AGG | + | chr7.3:13344576-13344595 | MS.gene23538:CDS | 30.0% | |
| TAGATTTGATCATGAAGGTA+AGG | + | chr7.3:13344581-13344600 | MS.gene23538:CDS | 30.0% | |
| TAGTGGTACTTTAGTTGTTA+TGG | + | chr7.3:13344623-13344642 | MS.gene23538:CDS | 30.0% | |
| TGATCAAATCTACCAATTCT+TGG | - | chr7.3:13344573-13344592 | None:intergenic | 30.0% | |
| TTTCCAATGAAACCATTAGA+AGG | - | chr7.3:13344219-13344238 | None:intergenic | 30.0% | |
| ! | GGAACATTTTTACTTTGGTT+TGG | + | chr7.3:13344645-13344664 | MS.gene23538:CDS | 30.0% |
| ! | GTCAATGAATTTGTTTGCAA+TGG | - | chr7.3:13343998-13344017 | None:intergenic | 30.0% |
| !! | GAAAATCTTTTGTTTGGTTC+TGG | + | chr7.3:13344468-13344487 | MS.gene23538:CDS | 30.0% |
| !! | GATGTTTGTAATGGTTTGTT+AGG | + | chr7.3:13344852-13344871 | MS.gene23538:CDS | 30.0% |
| !! | TGCACATTTGGTTCAAATTT+TGG | + | chr7.3:13345157-13345176 | MS.gene23538:CDS | 30.0% |
| !!! | CATTTTTACTTTGGTTTGGT+TGG | + | chr7.3:13344649-13344668 | MS.gene23538:CDS | 30.0% |
| ACACCTTCTAATGGTTTCAT+TGG | + | chr7.3:13344213-13344232 | MS.gene23538:CDS | 35.0% | |
| CCATAATCAAAAGACTGAGA+AGG | - | chr7.3:13344267-13344286 | None:intergenic | 35.0% | |
| GGTGAAAGTGGTAATTACTA+TGG | + | chr7.3:13344717-13344736 | MS.gene23538:CDS | 35.0% | |
| GTGGTAATTACTATGGTCAA+TGG | + | chr7.3:13344724-13344743 | MS.gene23538:CDS | 35.0% | |
| TATTTCAGTTGCACGTTTCT+TGG | - | chr7.3:13345342-13345361 | None:intergenic | 35.0% | |
| TTGATTGAAGGACCAAGAAT+TGG | + | chr7.3:13344558-13344577 | MS.gene23538:CDS | 35.0% | |
| TTGTTCTGTTGTTGATCCAT+GGG | + | chr7.3:13344899-13344918 | MS.gene23538:CDS | 35.0% | |
| TTTATCCAATAGTTGCGCAT+TGG | + | chr7.3:13344406-13344425 | MS.gene23538:CDS | 35.0% | |
| ! | AAGATTATTGGCTGCACATT+TGG | + | chr7.3:13345145-13345164 | MS.gene23538:CDS | 35.0% |
| ! | CGGTCTGAAAATCTTTTGTT+TGG | + | chr7.3:13344462-13344481 | MS.gene23538:CDS | 35.0% |
| !! | CCTTCTCAGTCTTTTGATTA+TGG | + | chr7.3:13344264-13344283 | MS.gene23538:CDS | 35.0% |
| !! | GTTTGTAATGGTTTGTTAGG+TGG | + | chr7.3:13344855-13344874 | MS.gene23538:CDS | 35.0% |
| !! | TGTGGTGTTGTTCATTTAGT+TGG | + | chr7.3:13344510-13344529 | MS.gene23538:CDS | 35.0% |
| !! | TTACTTTGGTTTGGTTGGTA+TGG | + | chr7.3:13344654-13344673 | MS.gene23538:CDS | 35.0% |
| !!! | TCTGGTGTTATTGATTTTGC+TGG | + | chr7.3:13344486-13344505 | MS.gene23538:CDS | 35.0% |
| AACAAACCATAAGGCCTATC+TGG | - | chr7.3:13345110-13345129 | None:intergenic | 40.0% | |
| AACGTTTGCAAACAGGTCAT+TGG | + | chr7.3:13344820-13344839 | MS.gene23538:CDS | 40.0% | |
| ATAGAAAAAAATGCCGCCAG+TGG | - | chr7.3:13344166-13344185 | None:intergenic | 40.0% | |
| CAAAACCAATGCGCAACTAT+TGG | - | chr7.3:13344414-13344433 | None:intergenic | 40.0% | |
| CATGGCAAAAACAAGGTAAG+CGG | - | chr7.3:13344058-13344077 | None:intergenic | 40.0% | |
| GAGTTCACATGAAGAAGAGA+TGG | + | chr7.3:13345250-13345269 | MS.gene23538:CDS | 40.0% | |
| GGATTGGATTTAACTAGCCA+TGG | + | chr7.3:13345275-13345294 | MS.gene23538:CDS | 40.0% | |
| GTTGTTCTGTTGTTGATCCA+TGG | + | chr7.3:13344898-13344917 | MS.gene23538:CDS | 40.0% | |
| GTTTCAATGAGAGGACATAG+TGG | + | chr7.3:13344606-13344625 | MS.gene23538:CDS | 40.0% | |
| TTGGATTTAACTAGCCATGG+TGG | + | chr7.3:13345278-13345297 | MS.gene23538:CDS | 40.0% | |
| TTTATGGTGGTTCACCAGAT+AGG | + | chr7.3:13345093-13345112 | MS.gene23538:CDS | 40.0% | |
| TTTGGGAAACGTTTGCAAAC+AGG | + | chr7.3:13344813-13344832 | MS.gene23538:CDS | 40.0% | |
| ! | AAAAGATTTTCAGACCGAGC+CGG | - | chr7.3:13344459-13344478 | None:intergenic | 40.0% |
| ! | ATGGTCAATGGAGTGCTATT+GGG | + | chr7.3:13344736-13344755 | MS.gene23538:CDS | 40.0% |
| ! | CAGCTCTCACTACTTTGTTT+GGG | + | chr7.3:13344796-13344815 | MS.gene23538:CDS | 40.0% |
| ! | GTTTGGGTGAGTGTTACTAT+GGG | + | chr7.3:13345188-13345207 | MS.gene23538:CDS | 40.0% |
| ! | TATGGTCAATGGAGTGCTAT+TGG | + | chr7.3:13344735-13344754 | MS.gene23538:CDS | 40.0% |
| ! | TGTTTGGGTGAGTGTTACTA+TGG | + | chr7.3:13345187-13345206 | MS.gene23538:CDS | 40.0% |
| !! | AGGCCTTATGGTTTGTTGTT+GGG | + | chr7.3:13345113-13345132 | MS.gene23538:CDS | 40.0% |
| !! | TAGGCCTTATGGTTTGTTGT+TGG | + | chr7.3:13345112-13345131 | MS.gene23538:CDS | 40.0% |
| !! | TTTAACTAGCCATGGTGGAT+TGG | + | chr7.3:13345283-13345302 | MS.gene23538:CDS | 40.0% |
| !!! | CAATAGTTGCGCATTGGTTT+TGG | + | chr7.3:13344412-13344431 | MS.gene23538:CDS | 40.0% |
| !!! | CTTGTTTTTGCCATGCAACT+CGG | + | chr7.3:13344063-13344082 | MS.gene23538:CDS | 40.0% |
| !!! | GTTATTGATTTTGCTGGCTG+TGG | + | chr7.3:13344492-13344511 | MS.gene23538:CDS | 40.0% |
| !!! | TTTTGGGGTGCTTTGATTGA+AGG | + | chr7.3:13344546-13344565 | MS.gene23538:CDS | 40.0% |
| ACTGATAAGCCAATCCACCA+TGG | - | chr7.3:13345295-13345314 | None:intergenic | 45.0% | |
| CAAGGTAAGCGGAAAAGAGA+AGG | - | chr7.3:13344047-13344066 | None:intergenic | 45.0% | |
| CAGTATCATGAAGAGCCTGA+AGG | + | chr7.3:13345311-13345330 | MS.gene23538:CDS | 45.0% | |
| CCTCCCAACAACAAACCATA+AGG | - | chr7.3:13345119-13345138 | None:intergenic | 45.0% | |
| CGAGTTGCATGGCAAAAACA+AGG | - | chr7.3:13344065-13344084 | None:intergenic | 45.0% | |
| CTTGAAGCTGCTCAACTTCA+TGG | + | chr7.3:13345005-13345024 | MS.gene23538:CDS | 45.0% | |
| GAAGCCGTTGCAGATGTATT+CGG | - | chr7.3:13343971-13343990 | None:intergenic | 45.0% | |
| GACAGCTGTGACAACTACAT+TGG | + | chr7.3:13344761-13344780 | MS.gene23538:CDS | 45.0% | |
| GCAGCTCTCACTACTTTGTT+TGG | + | chr7.3:13344795-13344814 | MS.gene23538:CDS | 45.0% | |
| GTAAGCGGAAAAGAGAAGGT+AGG | - | chr7.3:13344043-13344062 | None:intergenic | 45.0% | |
| TCACATGAAGAAGAGATGGC+TGG | + | chr7.3:13345254-13345273 | MS.gene23538:CDS | 45.0% | |
| TGAAGAAGAGATGGCTGGAT+TGG | + | chr7.3:13345259-13345278 | MS.gene23538:CDS | 45.0% | |
| TGAAGTTGAGCAGCTTCAAG+AGG | - | chr7.3:13345005-13345024 | None:intergenic | 45.0% | |
| ! | CCATGGGCTGCAATTATTTG+CGG | + | chr7.3:13344915-13344934 | MS.gene23538:CDS | 45.0% |
| ! | GGTTTTGCTGCTATAACTGC+AGG | + | chr7.3:13344876-13344895 | MS.gene23538:CDS | 45.0% |
| ! | TTCGGGTTTGCCTTTGCTTT+CGG | + | chr7.3:13344189-13344208 | MS.gene23538:CDS | 45.0% |
| ! | TTTTGGTCTGCTGATGGTTG+GGG | + | chr7.3:13344429-13344448 | MS.gene23538:CDS | 45.0% |
| !! | CCTTATGGTTTGTTGTTGGG+AGG | + | chr7.3:13345116-13345135 | MS.gene23538:CDS | 45.0% |
| !! | GGTAAGGGTGTTTCAATGAG+AGG | + | chr7.3:13344597-13344616 | MS.gene23538:CDS | 45.0% |
| !! | GTTTTGGTCTGCTGATGGTT+GGG | + | chr7.3:13344428-13344447 | MS.gene23538:CDS | 45.0% |
| !! | TATGGTTTGTTGTTGGGAGG+TGG | + | chr7.3:13345119-13345138 | MS.gene23538:CDS | 45.0% |
| !!! | CATGGTGTTTTTGGCACGAA+CGG | - | chr7.3:13344112-13344131 | None:intergenic | 45.0% |
| !!! | CATTGGTTTTGGTCTGCTGA+TGG | + | chr7.3:13344423-13344442 | MS.gene23538:CDS | 45.0% |
| !!! | GGTTGGTATGGTTTTAACCC+TGG | + | chr7.3:13344666-13344685 | MS.gene23538:CDS | 45.0% |
| AATGTTCTTGATGCCGCCAC+TGG | + | chr7.3:13344147-13344166 | MS.gene23538:CDS | 50.0% | |
| AGTGGCGGCATCAAGAACAT+TGG | - | chr7.3:13344148-13344167 | None:intergenic | 50.0% | |
| CATGGCAAAACCGAGTTGCA+TGG | - | chr7.3:13344076-13344095 | None:intergenic | 50.0% | |
| CATTTAGTTGGCGCAGTTGC+TGG | + | chr7.3:13344522-13344541 | MS.gene23538:CDS | 50.0% | |
| CCGCAAATAATTGCAGCCCA+TGG | - | chr7.3:13344918-13344937 | None:intergenic | 50.0% | |
| CGTTTCTTGGAACGTCCTTC+AGG | - | chr7.3:13345329-13345348 | None:intergenic | 50.0% | |
| GAAAAAAATGCCGCCAGTGG+CGG | - | chr7.3:13344163-13344182 | None:intergenic | 50.0% | |
| GAAGCTGCTCAACTTCATGG+TGG | + | chr7.3:13345008-13345027 | MS.gene23538:CDS | 50.0% | |
| GCTCAACTTCATGGTGGTTG+TGG | + | chr7.3:13345014-13345033 | MS.gene23538:CDS | 50.0% | |
| GCTGCCGAATACATCTGCAA+CGG | + | chr7.3:13343964-13343983 | MS.gene23538:CDS | 50.0% | |
| GCTGTGACAACTACATTGGC+TGG | + | chr7.3:13344765-13344784 | MS.gene23538:CDS | 50.0% | |
| GCTTTCGGCACACCTTCTAA+TGG | + | chr7.3:13344204-13344223 | MS.gene23538:CDS | 50.0% | |
| GGTTCACCAGATAGGCCTTA+TGG | + | chr7.3:13345101-13345120 | MS.gene23538:CDS | 50.0% | |
| GTTGCAGATGTATTCGGCAG+CGG | - | chr7.3:13343965-13343984 | None:intergenic | 50.0% | |
| TCATGGTGGTTGTGGCACAT+GGG | + | chr7.3:13345022-13345041 | MS.gene23538:CDS | 50.0% | |
| TTCATGGTGGTTGTGGCACA+TGG | + | chr7.3:13345021-13345040 | MS.gene23538:CDS | 50.0% | |
| ! | AGAAGGTGTGCCGAAAGCAA+AGG | - | chr7.3:13344202-13344221 | None:intergenic | 50.0% |
| ! | GCTTTTGCAATTGCTGCAGC+AGG | + | chr7.3:13344306-13344325 | MS.gene23538:CDS | 50.0% |
| ! | GTAGGTGTTGTCAACAGCGT+AGG | - | chr7.3:13344025-13344044 | None:intergenic | 50.0% |
| ! | GTCAATGGAGTGCTATTGGG+AGG | + | chr7.3:13344739-13344758 | MS.gene23538:CDS | 50.0% |
| !! | GGGAGGTGGTGGAAGATTAT+TGG | + | chr7.3:13345133-13345152 | MS.gene23538:CDS | 50.0% |
| !! | GGTTTTGGTCTGCTGATGGT+TGG | + | chr7.3:13344427-13344446 | MS.gene23538:CDS | 50.0% |
| !! | GTTGCTGCGTGGGTTTTGAT+TGG | + | chr7.3:13344942-13344961 | MS.gene23538:CDS | 50.0% |
| !! | TTGCGGATTTGTTGCTGCGT+GGG | + | chr7.3:13344932-13344951 | MS.gene23538:CDS | 50.0% |
| !! | TTTGCGGATTTGTTGCTGCG+TGG | + | chr7.3:13344931-13344950 | MS.gene23538:CDS | 50.0% |
| !!! | TGGCGCAGTTGCTGGTTTTT+GGG | + | chr7.3:13344530-13344549 | MS.gene23538:CDS | 50.0% |
| !!! | TTGGCGCAGTTGCTGGTTTT+TGG | + | chr7.3:13344529-13344548 | MS.gene23538:CDS | 50.0% |
| AACGGAACCAGCGCAAAGCA+TGG | - | chr7.3:13344094-13344113 | None:intergenic | 55.0% | |
| ATGGTGGTTGTGGCACATGG+GGG | + | chr7.3:13345024-13345043 | MS.gene23538:CDS | 55.0% | |
| CATGGTGGTTGTGGCACATG+GGG | + | chr7.3:13345023-13345042 | MS.gene23538:CDS | 55.0% | |
| GCTGCAGCAGGAATCACTAG+TGG | + | chr7.3:13344318-13344337 | MS.gene23538:CDS | 55.0% | |
| TGCTGATGGTTGGGGTAGTC+CGG | + | chr7.3:13344437-13344456 | MS.gene23538:CDS | 55.0% | |
| ! | GGTTTTGCCATGCTTTGCGC+TGG | + | chr7.3:13344084-13344103 | MS.gene23538:CDS | 55.0% |
| !! | GGTTTGTTGTTGGGAGGTGG+TGG | + | chr7.3:13345122-13345141 | MS.gene23538:CDS | 55.0% |
| !!! | GGCGCAGTTGCTGGTTTTTG+GGG | + | chr7.3:13344531-13344550 | MS.gene23538:CDS | 55.0% |
| ATGGTTGGGGTAGTCCGGCT+CGG | + | chr7.3:13344442-13344461 | MS.gene23538:CDS | 60.0% | |
| GATGTATTCGGCAGCGGCTG+TGG | - | chr7.3:13343959-13343978 | None:intergenic | 60.0% | |
| GTTCTTGATGCCGCCACTGG+CGG | + | chr7.3:13344150-13344169 | MS.gene23538:CDS | 60.0% | |
| TCCGACCTCCACGCTCTCCT+CGG | + | chr7.3:13343919-13343938 | MS.gene23538:CDS | 65.0% | |
| TGGAGTTTGCACCGCTGCCG+AGG | - | chr7.3:13343939-13343958 | None:intergenic | 65.0% | |
| CTCCACGCTCTCCTCGGCAG+CGG | + | chr7.3:13343925-13343944 | MS.gene23538:CDS | 70.0% | |
| ! | GAGAGCGTGGAGGTCGGAGG+CGG | - | chr7.3:13343917-13343936 | None:intergenic | 70.0% |
| ! | GAGGAGAGCGTGGAGGTCGG+AGG | - | chr7.3:13343920-13343939 | None:intergenic | 70.0% |
| ! | GCCGAGGAGAGCGTGGAGGT+CGG | - | chr7.3:13343923-13343942 | None:intergenic | 70.0% |
| CACCGCTGCCGAGGAGAGCG+TGG | - | chr7.3:13343930-13343949 | None:intergenic | 75.0% | |
| GTGGAGGTCGGAGGCGGAGC+AGG | - | chr7.3:13343911-13343930 | None:intergenic | 75.0% | |
| ! | CGCTGCCGAGGAGAGCGTGG+AGG | - | chr7.3:13343927-13343946 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 13343895 | 13345364 | 13343895 | ID=MS.gene23538 |
| chr7.3 | mRNA | 13343895 | 13345364 | 13343895 | ID=MS.gene23538.t1;Parent=MS.gene23538 |
| chr7.3 | exon | 13343895 | 13345364 | 13343895 | ID=MS.gene23538.t1.exon1;Parent=MS.gene23538.t1 |
| chr7.3 | CDS | 13343895 | 13345364 | 13343895 | ID=cds.MS.gene23538.t1;Parent=MS.gene23538.t1 |
| Gene Sequence |
| Protein sequence |
