Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23962.t1 | XP_012570100.1 | 78.7 | 334 | 65 | 1 | 153 | 480 | 5 | 338 | 1.10E-146 | 530 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23962.t1 | Q9FLH8 | 66.1 | 322 | 103 | 1 | 162 | 477 | 13 | 334 | 5.1e-119 | 429.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23962.t1 | A0A1S3E4Z1 | 78.7 | 334 | 65 | 1 | 153 | 480 | 5 | 338 | 8.3e-147 | 530.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056386 | MS.gene23962 | PPI |
| MS.gene98726 | MS.gene23962 | PPI |
| MS.gene85276 | MS.gene23962 | PPI |
| MS.gene28335 | MS.gene23962 | PPI |
| MS.gene23962 | MS.gene052011 | PPI |
| MS.gene46881 | MS.gene23962 | PPI |
| MS.gene23962 | MS.gene003877 | PPI |
| MS.gene032177 | MS.gene23962 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23962.t1 | MTR_1g101950 | 78.932 | 337 | 64 | 2 | 152 | 482 | 4 | 339 | 0.0 | 530 |
| MS.gene23962.t1 | MTR_1g069745 | 86.275 | 306 | 30 | 2 | 184 | 489 | 1 | 294 | 0.0 | 530 |
| MS.gene23962.t1 | MTR_1g069490 | 60.860 | 442 | 130 | 6 | 45 | 484 | 2 | 402 | 3.41e-170 | 485 |
| MS.gene23962.t1 | MTR_6g089480 | 76.667 | 300 | 70 | 0 | 181 | 480 | 9 | 308 | 4.93e-170 | 481 |
| MS.gene23962.t1 | MTR_1g057810 | 55.983 | 468 | 175 | 6 | 16 | 479 | 120 | 560 | 6.12e-155 | 452 |
| MS.gene23962.t1 | MTR_6g089480 | 77.273 | 264 | 60 | 0 | 181 | 444 | 9 | 272 | 7.38e-149 | 426 |
| MS.gene23962.t1 | MTR_6g089480 | 77.863 | 262 | 58 | 0 | 181 | 442 | 9 | 270 | 1.41e-148 | 425 |
| MS.gene23962.t1 | MTR_1g105150 | 54.060 | 468 | 170 | 7 | 16 | 479 | 120 | 546 | 6.23e-143 | 421 |
| MS.gene23962.t1 | MTR_5g079460 | 63.988 | 336 | 112 | 3 | 152 | 479 | 45 | 379 | 3.12e-141 | 411 |
| MS.gene23962.t1 | MTR_4g067310 | 58.044 | 317 | 125 | 3 | 170 | 480 | 13 | 327 | 1.08e-122 | 362 |
| MS.gene23962.t1 | MTR_2g098950 | 56.825 | 315 | 128 | 3 | 172 | 480 | 14 | 326 | 4.98e-122 | 360 |
| MS.gene23962.t1 | MTR_1g076850 | 56.190 | 315 | 130 | 3 | 172 | 480 | 8 | 320 | 3.02e-121 | 358 |
| MS.gene23962.t1 | MTR_7g075860 | 57.143 | 315 | 127 | 2 | 172 | 478 | 41 | 355 | 3.61e-120 | 356 |
| MS.gene23962.t1 | MTR_1g054730 | 59.245 | 265 | 77 | 2 | 216 | 480 | 154 | 387 | 5.54e-92 | 285 |
| MS.gene23962.t1 | MTR_0046s0180 | 74.757 | 103 | 26 | 0 | 378 | 480 | 7 | 109 | 5.03e-47 | 159 |
| MS.gene23962.t1 | MTR_5g044990 | 30.719 | 306 | 185 | 7 | 192 | 475 | 250 | 550 | 4.85e-41 | 155 |
| MS.gene23962.t1 | MTR_4g019165 | 31.250 | 320 | 187 | 6 | 190 | 477 | 131 | 449 | 1.12e-39 | 149 |
| MS.gene23962.t1 | MTR_8g096570 | 56.322 | 87 | 34 | 2 | 16 | 102 | 150 | 232 | 2.43e-21 | 98.2 |
| MS.gene23962.t1 | MTR_0046s0210 | 37.179 | 156 | 82 | 6 | 78 | 220 | 1 | 153 | 2.38e-13 | 68.2 |
| MS.gene23962.t1 | MTR_1g071270 | 43.810 | 105 | 45 | 4 | 17 | 112 | 10 | 109 | 1.31e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23962.t1 | AT5G51830 | 66.149 | 322 | 103 | 1 | 162 | 477 | 13 | 334 | 4.38e-152 | 437 |
| MS.gene23962.t1 | AT5G51830 | 66.149 | 322 | 103 | 1 | 162 | 477 | 13 | 334 | 4.38e-152 | 437 |
| MS.gene23962.t1 | AT1G66430 | 64.220 | 327 | 110 | 2 | 157 | 477 | 50 | 375 | 8.64e-146 | 422 |
| MS.gene23962.t1 | AT4G10260 | 59.091 | 308 | 118 | 3 | 172 | 473 | 6 | 311 | 1.77e-122 | 361 |
| MS.gene23962.t1 | AT2G31390 | 56.075 | 321 | 133 | 3 | 166 | 480 | 3 | 321 | 6.59e-121 | 357 |
| MS.gene23962.t1 | AT3G59480 | 55.205 | 317 | 134 | 3 | 167 | 477 | 5 | 319 | 1.02e-120 | 357 |
| MS.gene23962.t1 | AT1G06030 | 54.462 | 325 | 140 | 3 | 162 | 480 | 1 | 323 | 1.17e-119 | 354 |
| MS.gene23962.t1 | AT1G06020 | 54.603 | 315 | 135 | 2 | 172 | 480 | 10 | 322 | 1.17e-115 | 344 |
| MS.gene23962.t1 | AT3G54090 | 31.564 | 358 | 191 | 8 | 172 | 477 | 103 | 458 | 1.28e-45 | 166 |
| MS.gene23962.t1 | AT1G50390 | 47.647 | 170 | 58 | 1 | 311 | 480 | 1 | 139 | 1.30e-42 | 148 |
| MS.gene23962.t1 | AT1G69200 | 29.123 | 285 | 180 | 6 | 196 | 460 | 250 | 532 | 3.15e-37 | 145 |
| MS.gene23962.t1 | AT5G63540 | 55.172 | 87 | 35 | 2 | 16 | 102 | 178 | 260 | 1.16e-18 | 89.7 |
| MS.gene23962.t1 | AT5G63540 | 55.172 | 87 | 35 | 2 | 16 | 102 | 178 | 260 | 1.38e-18 | 89.4 |
Find 109 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAACCCTCGTGGATTAA+AGG | 0.222703 | 1.3:-49310132 | MS.gene23962:intron |
| GGAACCATAATGGAATATTT+TGG | 0.235298 | 1.3:+49307964 | None:intergenic |
| AAAATTTACCTTTATGATAT+CGG | 0.267627 | 1.3:+49307781 | None:intergenic |
| CCTCAAAATACTAGAGTATT+GGG | 0.268709 | 1.3:-49309953 | MS.gene23962:CDS |
| ATGCCGACTGCCACGTTTGC+AGG | 0.283260 | 1.3:+49308735 | None:intergenic |
| CAGGCCAAAATATTCCATTA+TGG | 0.292003 | 1.3:-49307968 | MS.gene23962:CDS |
| AATATCTTGCTCCTAACTTA+TGG | 0.303753 | 1.3:-49309889 | MS.gene23962:CDS |
| TAGGTTGGAGCAGATGAATT+TGG | 0.306305 | 1.3:-49308266 | MS.gene23962:CDS |
| TCCTAGTGCTGATATGCTTC+TGG | 0.311191 | 1.3:-49308108 | MS.gene23962:CDS |
| GCTTGTTGATACCTGTGTTT+TGG | 0.311203 | 1.3:+49310263 | None:intergenic |
| AGGTTGGAGCAGATGAATTT+GGG | 0.318393 | 1.3:-49308265 | MS.gene23962:CDS |
| CGAATTTGAGATTGGCACTA+TGG | 0.327098 | 1.3:-49307853 | MS.gene23962:CDS |
| GATGGTGTTCGTGAAGTCTT+TGG | 0.340373 | 1.3:-49310191 | MS.gene23962:CDS |
| TTTCGTTGCAGCCTTCTGTT+AGG | 0.355686 | 1.3:+49308850 | None:intergenic |
| TCCATCTCTCGTAATTATAA+AGG | 0.356597 | 1.3:+49309991 | None:intergenic |
| AGTGAACTGGTTGTTTGTTT+TGG | 0.359343 | 1.3:-49308825 | MS.gene23962:CDS |
| GCATATCAGCACTAGGATTT+CGG | 0.363456 | 1.3:+49308114 | None:intergenic |
| ACTTCTCTATTCCATAAGTT+AGG | 0.379694 | 1.3:+49309878 | None:intergenic |
| AGCGTCTTTGCCTGGTTTCA+AGG | 0.380051 | 1.3:-49308775 | MS.gene23962:CDS |
| GAACTGGTATAATGAGCATA+TGG | 0.394625 | 1.3:-49307811 | MS.gene23962:CDS |
| CAAAATAACGTTGATACATC+TGG | 0.394700 | 1.3:-49308218 | MS.gene23962:CDS |
| TCAAACTCATGGAACCATAA+TGG | 0.399197 | 1.3:+49307954 | None:intergenic |
| CTGCGATCACAATGATGAAC+TGG | 0.410514 | 1.3:-49307028 | MS.gene23962:CDS |
| CATAGTGCCAATCTCAAATT+CGG | 0.415637 | 1.3:+49307854 | None:intergenic |
| CAACAAGCCCCTCCAGGTCC+AGG | 0.439462 | 1.3:-49310248 | MS.gene23962:CDS |
| TCCTCAAAATACTAGAGTAT+TGG | 0.441449 | 1.3:-49309954 | MS.gene23962:CDS |
| TCCTGCACTTTGATGCAAAT+AGG | 0.445703 | 1.3:-49306971 | MS.gene23962:CDS |
| AAACCAGGCAAAGACGCTAT+TGG | 0.448395 | 1.3:+49308780 | None:intergenic |
| GTATGATCCGAATTTGAGAT+TGG | 0.448557 | 1.3:-49307861 | MS.gene23962:CDS |
| TTCAATCCCTGGACCTGGAG+GGG | 0.451763 | 1.3:+49310241 | None:intergenic |
| TCCTTTATAATTACGAGAGA+TGG | 0.453748 | 1.3:-49309992 | MS.gene23962:CDS |
| CAAGGTTGAAGGGCTTCAAT+AGG | 0.455073 | 1.3:+49310155 | None:intergenic |
| TGGCACTATGGCCAACAGCC+TGG | 0.458221 | 1.3:-49307841 | MS.gene23962:CDS |
| GCTGTTATTAATGTATTGGC+AGG | 0.465263 | 1.3:-49310315 | MS.gene23962:CDS |
| CTGGTGATGCATTTGTTAGC+GGG | 0.470258 | 1.3:-49307223 | MS.gene23962:CDS |
| GCAGTCGGCATCTCTAAGTT+AGG | 0.475518 | 1.3:-49308723 | MS.gene23962:CDS |
| AAGCTTCTAATTGTTACTGA+AGG | 0.479008 | 1.3:-49307558 | MS.gene23962:CDS |
| AAGGTATTTGTTGAGCATGC+TGG | 0.479735 | 1.3:-49309574 | MS.gene23962:CDS |
| ATGCCAATAGCGTCTTTGCC+TGG | 0.480095 | 1.3:-49308783 | MS.gene23962:CDS |
| CTGCAACGAAACAAGTGAAC+TGG | 0.480208 | 1.3:-49308838 | MS.gene23962:CDS |
| CTGCTTTCAATCCCTGGACC+TGG | 0.482436 | 1.3:+49310236 | None:intergenic |
| TCCTATTTGCATCAAAGTGC+AGG | 0.485616 | 1.3:+49306970 | None:intergenic |
| GCTTGCTGTTATTAATGTAT+TGG | 0.486977 | 1.3:-49310319 | MS.gene23962:CDS |
| CAAGAGTCCTTACCTATGCT+TGG | 0.489278 | 1.3:+49309832 | None:intergenic |
| AGGCACCTGCTTTCAATCCC+TGG | 0.489668 | 1.3:+49310230 | None:intergenic |
| GGATCTAGCCGATATCATAA+AGG | 0.490697 | 1.3:-49307789 | MS.gene23962:intron |
| CTCCTATATGATATGGACAT+TGG | 0.492055 | 1.3:-49310353 | None:intergenic |
| GAGGGTTTGCACAAGGTTGA+AGG | 0.493263 | 1.3:+49310144 | None:intergenic |
| CTAATTGTTACTGAAGGGTC+GGG | 0.495709 | 1.3:-49307552 | MS.gene23962:CDS |
| GGCACTATGGCCAACAGCCT+GGG | 0.499713 | 1.3:-49307840 | MS.gene23962:CDS |
| TTTCAATCCCTGGACCTGGA+GGG | 0.500383 | 1.3:+49310240 | None:intergenic |
| ACAGCCTGGGATGCTCGAAC+TGG | 0.503210 | 1.3:-49307827 | MS.gene23962:CDS |
| AATACAACATCATCATCATA+AGG | 0.505738 | 1.3:+49307606 | None:intergenic |
| CCAGCACCAGTTGTGTCAAA+AGG | 0.513580 | 1.3:+49307242 | None:intergenic |
| TGAAGTCTTTGGAATGGAGA+TGG | 0.519022 | 1.3:-49310180 | MS.gene23962:CDS |
| TATACCAGTTCGAGCATCCC+AGG | 0.528071 | 1.3:+49307823 | None:intergenic |
| CTTTCAATCCCTGGACCTGG+AGG | 0.535473 | 1.3:+49310239 | None:intergenic |
| TCTAATTGTTACTGAAGGGT+CGG | 0.537241 | 1.3:-49307553 | MS.gene23962:CDS |
| AGCTTCTAATTGTTACTGAA+GGG | 0.538689 | 1.3:-49307557 | MS.gene23962:CDS |
| AACTGGTATAATGAGCATAT+GGG | 0.540901 | 1.3:-49307810 | MS.gene23962:CDS |
| TGGATCATGAATCAAACTCA+TGG | 0.541261 | 1.3:+49307943 | None:intergenic |
| TTCATCTGCATTTATAAGCA+AGG | 0.548096 | 1.3:-49308697 | MS.gene23962:intron |
| TTAAAGGCACCTTCTTGATG+AGG | 0.548253 | 1.3:+49308063 | None:intergenic |
| TTCTAATGCCAGCACCCCAT+CGG | 0.553550 | 1.3:-49308183 | MS.gene23962:CDS |
| AGGGTTTGCACAAGGTTGAA+GGG | 0.557314 | 1.3:+49310145 | None:intergenic |
| GTTCGAGCATCCCAGGCTGT+TGG | 0.559305 | 1.3:+49307830 | None:intergenic |
| GAGAGATGGAAGATTGATGC+TGG | 0.559858 | 1.3:-49309978 | MS.gene23962:CDS |
| AGGTATCAACAAGCCCCTCC+AGG | 0.564247 | 1.3:-49310254 | MS.gene23962:CDS |
| CTAGGAGTTTCCTTGAAACC+AGG | 0.572449 | 1.3:+49308765 | None:intergenic |
| AATAGAGAAGTTAAAGCTGT+AGG | 0.574801 | 1.3:-49309866 | MS.gene23962:CDS |
| CAGGTCCAGGGATTGAAAGC+AGG | 0.576037 | 1.3:-49310235 | MS.gene23962:CDS |
| CATCGGTCAATGTCAACTGC+AGG | 0.580973 | 1.3:+49310210 | None:intergenic |
| GCTCCTGCAAACGTGGCAGT+CGG | 0.582385 | 1.3:-49308738 | MS.gene23962:CDS |
| CTCAAAATACTAGAGTATTG+GGG | 0.587799 | 1.3:-49309952 | MS.gene23962:CDS |
| CAACCTTGTGCAAACCCTCG+TGG | 0.588601 | 1.3:-49310140 | MS.gene23962:CDS |
| AGGCAAAGACGCTATTGGCA+TGG | 0.590797 | 1.3:+49308785 | None:intergenic |
| GCTGGTGATGCATTTGTTAG+CGG | 0.592899 | 1.3:-49307224 | MS.gene23962:CDS |
| TCTGATGATCTCCTAACAGA+AGG | 0.595179 | 1.3:-49308861 | MS.gene23962:CDS |
| AATCCACGAGGGTTTGCACA+AGG | 0.595884 | 1.3:+49310137 | None:intergenic |
| AGATGAATTTGGGTATATGT+TGG | 0.599101 | 1.3:-49308255 | MS.gene23962:CDS |
| AACAAGCCCCTCCAGGTCCA+GGG | 0.602938 | 1.3:-49310247 | MS.gene23962:CDS |
| AGAGTCTTTAGCAATTCTCA+AGG | 0.603061 | 1.3:+49307898 | None:intergenic |
| GACTTCTTGTGTCCAAGCAT+AGG | 0.604267 | 1.3:-49309844 | MS.gene23962:intron |
| GCAAGATGAACATACTTGCA+TGG | 0.608530 | 1.3:+49307923 | None:intergenic |
| TCAAAATACTAGAGTATTGG+GGG | 0.609179 | 1.3:-49309951 | MS.gene23962:CDS |
| TGTGATCGCAGCACATACAT+TGG | 0.610356 | 1.3:+49307040 | None:intergenic |
| TGATTGTAACCTCATCAAGA+AGG | 0.611345 | 1.3:-49308072 | MS.gene23962:intron |
| TGTTCGTGAAGTCTTTGGAA+TGG | 0.611610 | 1.3:-49310186 | MS.gene23962:CDS |
| ACGTTTGCAGGAGCACCACT+AGG | 0.614116 | 1.3:+49308747 | None:intergenic |
| TAGTGGTGCTCCTGCAAACG+TGG | 0.615497 | 1.3:-49308745 | MS.gene23962:CDS |
| TCCGTTGTCCTCCAAAACAC+AGG | 0.617930 | 1.3:-49310274 | MS.gene23962:CDS |
| CGATCACAATGATGAACTGG+GGG | 0.618178 | 1.3:-49307025 | MS.gene23962:CDS |
| GTCGGCATCTCTAAGTTAGG+TGG | 0.623369 | 1.3:-49308720 | MS.gene23962:CDS |
| AAAGACTTCACGAACACCAT+CGG | 0.623440 | 1.3:+49310193 | None:intergenic |
| TGTGTCAAAAGGTTCAACAT+TGG | 0.633430 | 1.3:+49307253 | None:intergenic |
| TGCGATCACAATGATGAACT+GGG | 0.636807 | 1.3:-49307027 | MS.gene23962:CDS |
| ATTGTTACTGAAGGGTCGGG+AGG | 0.643977 | 1.3:-49307549 | MS.gene23962:CDS |
| TCCAGAAGCATATCAGCACT+AGG | 0.646459 | 1.3:+49308107 | None:intergenic |
| TGGCAACCTTTAATCCACGA+GGG | 0.663227 | 1.3:+49310126 | None:intergenic |
| CTGCAGTTGACATTGACCGA+TGG | 0.667088 | 1.3:-49310209 | MS.gene23962:CDS |
| TCAAATTCGGATCATACGAG+AGG | 0.668812 | 1.3:+49307867 | None:intergenic |
| ACGTTGATACATCTGGCATG+CGG | 0.696496 | 1.3:-49308211 | MS.gene23962:CDS |
| CAAAATACTAGAGTATTGGG+GGG | 0.698648 | 1.3:-49309950 | MS.gene23962:CDS |
| GTGGCAACCTTTAATCCACG+AGG | 0.710105 | 1.3:+49310125 | None:intergenic |
| GCGATCACAATGATGAACTG+GGG | 0.717142 | 1.3:-49307026 | MS.gene23962:CDS |
| GGTTTCAAGGAAACTCCTAG+TGG | 0.725966 | 1.3:-49308762 | MS.gene23962:CDS |
| GGACTAGCTGATGATCTCAG+CGG | 0.757827 | 1.3:-49309926 | MS.gene23962:CDS |
| AGGTTGTAGATATTACACCA+AGG | 0.768244 | 1.3:-49307529 | MS.gene23962:intron |
| GATCACAATGATGAACTGGG+GGG | 0.781296 | 1.3:-49307024 | MS.gene23962:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATAAAAGTTTAATAAA+TGG | - | chr1.3:49308055-49308074 | MS.gene23962:intron | 10.0% |
| !! | AAGATAAAAGTTTAATAAAT+GGG | - | chr1.3:49308056-49308075 | MS.gene23962:intron | 10.0% |
| !!! | ACTTATTTGATTTAATTTTT+TGG | + | chr1.3:49307887-49307906 | None:intergenic | 10.0% |
| !!! | ATTTAATTTAACAATAGAAA+AGG | + | chr1.3:49308861-49308880 | None:intergenic | 10.0% |
| !!! | GTCTTTTTTTTTTTTTTTTT+TGG | - | chr1.3:49307671-49307690 | MS.gene23962:intron | 10.0% |
| !!! | TTTAATTTAACAATAGAAAA+GGG | + | chr1.3:49308860-49308879 | None:intergenic | 10.0% |
| !! | AAAATTTACCTTTATGATAT+CGG | + | chr1.3:49309516-49309535 | None:intergenic | 15.0% |
| !! | ATTATACAGAATTAAACAAT+AGG | + | chr1.3:49309293-49309312 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTGAAACAGATT+TGG | - | chr1.3:49308668-49308687 | MS.gene23962:intron | 15.0% |
| !!! | TTTGATTTAATTTTTTGGTA+TGG | + | chr1.3:49307882-49307901 | None:intergenic | 15.0% |
| !! | AGTAAATACATGATATTTCT+AGG | + | chr1.3:49308900-49308919 | None:intergenic | 20.0% |
| !! | CTAATTAGCATAACTTAATA+AGG | - | chr1.3:49308299-49308318 | MS.gene23962:intron | 20.0% |
| !! | GCAAAGAAAATAATAAAATG+AGG | + | chr1.3:49309848-49309867 | None:intergenic | 20.0% |
| !! | TAATAACCATGATTATAGAT+AGG | - | chr1.3:49307553-49307572 | MS.gene23962:CDS | 20.0% |
| !! | TAGAAAAAAAATTGTGTGTT+TGG | - | chr1.3:49310170-49310189 | MS.gene23962:CDS | 20.0% |
| !! | TATTTATTGACATGGTTATT+TGG | - | chr1.3:49308634-49308653 | MS.gene23962:intron | 20.0% |
| !! | TGTAAAGTTGCAAAATAATT+TGG | - | chr1.3:49307856-49307875 | MS.gene23962:CDS | 20.0% |
| !!! | ATTAAACAATAGGTCTTTTA+TGG | + | chr1.3:49309283-49309302 | None:intergenic | 20.0% |
| !!! | TATAATTTAATACTGATTGC+AGG | - | chr1.3:49309307-49309326 | MS.gene23962:intron | 20.0% |
| !!! | TTAACTCAGATTTTAATTGT+CGG | - | chr1.3:49309806-49309825 | MS.gene23962:intron | 20.0% |
| !!! | TTTTGAATTCAACTATAACA+TGG | + | chr1.3:49308201-49308220 | None:intergenic | 20.0% |
| ! | AAATCTGAGTTAAATGACTT+TGG | + | chr1.3:49309799-49309818 | None:intergenic | 25.0% |
| ! | AATACAACATCATCATCATA+AGG | + | chr1.3:49309691-49309710 | None:intergenic | 25.0% |
| ! | AATAGAAGAATCATTTCACT+CGG | + | chr1.3:49308274-49308293 | None:intergenic | 25.0% |
| ! | AATCAACCTATCTATAATCA+TGG | + | chr1.3:49307562-49307581 | None:intergenic | 25.0% |
| ! | AGATTTGAACAAATCAAACA+TGG | + | chr1.3:49308719-49308738 | None:intergenic | 25.0% |
| ! | ATCTAACTCATTCAAATACT+AGG | + | chr1.3:49307798-49307817 | None:intergenic | 25.0% |
| ! | ATGTATGTATTGAGATGAAA+AGG | + | chr1.3:49307202-49307221 | None:intergenic | 25.0% |
| ! | GAATTACCTCAAAAATACTT+GGG | + | chr1.3:49310120-49310139 | None:intergenic | 25.0% |
| ! | GTTATTACTATATGATCACA+TGG | + | chr1.3:49307540-49307559 | None:intergenic | 25.0% |
| ! | TAAACAGAGATGGAAATTAA+AGG | + | chr1.3:49309250-49309269 | None:intergenic | 25.0% |
| ! | TAACAATAGAAAAGGGAAAA+AGG | + | chr1.3:49308853-49308872 | None:intergenic | 25.0% |
| ! | TAATTGTAAAAAAAGCCGAT+GGG | + | chr1.3:49309129-49309148 | None:intergenic | 25.0% |
| ! | TCTATGTCTATTTATTGACA+TGG | - | chr1.3:49308626-49308645 | MS.gene23962:intron | 25.0% |
| ! | TGAATTACCTCAAAAATACT+TGG | + | chr1.3:49310121-49310140 | None:intergenic | 25.0% |
| !! | AATTTTTGTGCAGGATTTTA+AGG | - | chr1.3:49310003-49310022 | MS.gene23962:CDS | 25.0% |
| !! | ATTTTTGTGCAGGATTTTAA+GGG | - | chr1.3:49310004-49310023 | MS.gene23962:CDS | 25.0% |
| !! | TGATTACTAAATTTTTGTGC+AGG | - | chr1.3:49309994-49310013 | MS.gene23962:CDS | 25.0% |
| !!! | CTACAAGAAGTTTTATTCTT+AGG | + | chr1.3:49308934-49308953 | None:intergenic | 25.0% |
| !!! | TGTTTTGGTGAAATGTTAAT+AGG | - | chr1.3:49308484-49308503 | MS.gene23962:intron | 25.0% |
| !!! | TTTTTTACAATTAGAGCTGA+TGG | - | chr1.3:49309136-49309155 | MS.gene23962:intron | 25.0% |
| AAAAGGGAAAAAGGTAGAAT+GGG | + | chr1.3:49308844-49308863 | None:intergenic | 30.0% | |
| AACTGGTATAATGAGCATAT+GGG | - | chr1.3:49309484-49309503 | MS.gene23962:intron | 30.0% | |
| AACTTAATAAGGATGTTCTG+TGG | - | chr1.3:49308310-49308329 | MS.gene23962:intron | 30.0% | |
| AAGCTTCTAATTGTTACTGA+AGG | - | chr1.3:49309736-49309755 | MS.gene23962:intron | 30.0% | |
| AATAGAGAAGTTAAAGCTGT+AGG | - | chr1.3:49307428-49307447 | MS.gene23962:intron | 30.0% | |
| AATATCTTGCTCCTAACTTA+TGG | - | chr1.3:49307405-49307424 | MS.gene23962:intron | 30.0% | |
| AATTGTAAAAAAAGCCGATG+GGG | + | chr1.3:49309128-49309147 | None:intergenic | 30.0% | |
| ACTTCTCTATTCCATAAGTT+AGG | + | chr1.3:49307419-49307438 | None:intergenic | 30.0% | |
| AGATGAATTTGGGTATATGT+TGG | - | chr1.3:49309039-49309058 | MS.gene23962:intron | 30.0% | |
| AGCTTCTAATTGTTACTGAA+GGG | - | chr1.3:49309737-49309756 | MS.gene23962:intron | 30.0% | |
| ATAGAAGAATCATTTCACTC+GGG | + | chr1.3:49308273-49308292 | None:intergenic | 30.0% | |
| ATTTCTGAGTATCATCATTG+TGG | + | chr1.3:49307638-49307657 | None:intergenic | 30.0% | |
| CAAAATAACGTTGATACATC+TGG | - | chr1.3:49309076-49309095 | MS.gene23962:intron | 30.0% | |
| CAGATATCTTTACACATTCT+AGG | - | chr1.3:49310139-49310158 | MS.gene23962:CDS | 30.0% | |
| CATATTATATCAGTCTGTCA+TGG | - | chr1.3:49307592-49307611 | MS.gene23962:CDS | 30.0% | |
| CATGACAGACTGATATAATA+TGG | + | chr1.3:49307594-49307613 | None:intergenic | 30.0% | |
| CCATCTCTGTTTATAAAATG+TGG | - | chr1.3:49309257-49309276 | MS.gene23962:intron | 30.0% | |
| CTAATTGTAAAAAAAGCCGA+TGG | + | chr1.3:49309130-49309149 | None:intergenic | 30.0% | |
| GAAGAAAGAATGATATGCAA+TGG | + | chr1.3:49309582-49309601 | None:intergenic | 30.0% | |
| GATCACAACTAAATTCACAA+TGG | + | chr1.3:49308104-49308123 | None:intergenic | 30.0% | |
| GTAGTAGTATTCTGAATGTT+AGG | - | chr1.3:49308950-49308969 | MS.gene23962:intron | 30.0% | |
| TACAAGTAGTTTATGAAGCT+TGG | - | chr1.3:49308221-49308240 | MS.gene23962:CDS | 30.0% | |
| TCCATCTCTCGTAATTATAA+AGG | + | chr1.3:49307306-49307325 | None:intergenic | 30.0% | |
| TCCTCAAAATACTAGAGTAT+TGG | - | chr1.3:49307340-49307359 | MS.gene23962:intron | 30.0% | |
| TCCTTTATAATTACGAGAGA+TGG | - | chr1.3:49307302-49307321 | MS.gene23962:intron | 30.0% | |
| TGTGAATTTAGTTGTGATCT+AGG | - | chr1.3:49308105-49308124 | MS.gene23962:CDS | 30.0% | |
| TTAGGAATGTGAATCTATGT+TGG | - | chr1.3:49308968-49308987 | MS.gene23962:intron | 30.0% | |
| TTCATCTGCATTTATAAGCA+AGG | - | chr1.3:49308597-49308616 | MS.gene23962:intron | 30.0% | |
| ! | CCACATTTTATAAACAGAGA+TGG | + | chr1.3:49309260-49309279 | None:intergenic | 30.0% |
| ! | CCTCAAAATACTAGAGTATT+GGG | - | chr1.3:49307341-49307360 | MS.gene23962:intron | 30.0% |
| ! | TTGTGGCAGAATTTTAAATG+CGG | + | chr1.3:49307621-49307640 | None:intergenic | 30.0% |
| !! | ACTTTTTCTTGTCAATGCTT+GGG | + | chr1.3:49307761-49307780 | None:intergenic | 30.0% |
| !! | ATGAAGTTATTTTGTGTGAC+AGG | - | chr1.3:49310198-49310217 | MS.gene23962:CDS | 30.0% |
| !! | CTCAAAATACTAGAGTATTG+GGG | - | chr1.3:49307342-49307361 | MS.gene23962:intron | 30.0% |
| !! | GCTTGCTGTTATTAATGTAT+TGG | - | chr1.3:49306975-49306994 | MS.gene23962:CDS | 30.0% |
| !! | GGAACCATAATGGAATATTT+TGG | + | chr1.3:49309333-49309352 | None:intergenic | 30.0% |
| !! | TCAAAATACTAGAGTATTGG+GGG | - | chr1.3:49307343-49307362 | MS.gene23962:intron | 30.0% |
| !!! | ATTACTTTTTTGACTTGTGG+TGG | - | chr1.3:49309661-49309680 | MS.gene23962:intron | 30.0% |
| !!! | CAGATTTTAATTGTCGGAAT+AGG | - | chr1.3:49309812-49309831 | MS.gene23962:intron | 30.0% |
| !!! | GAGATTACTTTTTTGACTTG+TGG | - | chr1.3:49309658-49309677 | MS.gene23962:intron | 30.0% |
| !!! | GTTGGTTCAAGTTTTTTTAC+TGG | + | chr1.3:49308392-49308411 | None:intergenic | 30.0% |
| !!! | TACTTTTTCTTGTCAATGCT+TGG | + | chr1.3:49307762-49307781 | None:intergenic | 30.0% |
| AAAGGGAAAAAGGTAGAATG+GGG | + | chr1.3:49308843-49308862 | None:intergenic | 35.0% | |
| AAGCTTGGCTATTAGCTATT+AGG | - | chr1.3:49308236-49308255 | MS.gene23962:CDS | 35.0% | |
| ACAATTTCGACACTCAATGA+CGG | - | chr1.3:49309924-49309943 | MS.gene23962:CDS | 35.0% | |
| ACCTGCAAAACATGAATTGT+TGG | + | chr1.3:49308410-49308429 | None:intergenic | 35.0% | |
| AGAGTCTTTAGCAATTCTCA+AGG | + | chr1.3:49309399-49309418 | None:intergenic | 35.0% | |
| AGGTTGTAGATATTACACCA+AGG | - | chr1.3:49309765-49309784 | MS.gene23962:intron | 35.0% | |
| ATGGGAAGTTATAGTTGGTT+AGG | + | chr1.3:49308815-49308834 | None:intergenic | 35.0% | |
| CAGGCCAAAATATTCCATTA+TGG | - | chr1.3:49309326-49309345 | MS.gene23962:intron | 35.0% | |
| CATAGTGCCAATCTCAAATT+CGG | + | chr1.3:49309443-49309462 | None:intergenic | 35.0% | |
| CATGTTGTAAAACTTGAGCA+AGG | - | chr1.3:49309951-49309970 | MS.gene23962:CDS | 35.0% | |
| GAAAAGGGAAAAAGGTAGAA+TGG | + | chr1.3:49308845-49308864 | None:intergenic | 35.0% | |
| GAACTGGTATAATGAGCATA+TGG | - | chr1.3:49309483-49309502 | MS.gene23962:intron | 35.0% | |
| GGTTTCTTGTTACTATCTTC+AGG | - | chr1.3:49308689-49308708 | MS.gene23962:intron | 35.0% | |
| TAACGTGGTTTCTATTCGAT+GGG | + | chr1.3:49308789-49308808 | None:intergenic | 35.0% | |
| TCAAACTCATGGAACCATAA+TGG | + | chr1.3:49309343-49309362 | None:intergenic | 35.0% | |
| TCATCAATTCTTCTGCATGA+AGG | - | chr1.3:49308148-49308167 | MS.gene23962:CDS | 35.0% | |
| TCTAATTGTTACTGAAGGGT+CGG | - | chr1.3:49309741-49309760 | MS.gene23962:intron | 35.0% | |
| TGATTGTAACCTCATCAAGA+AGG | - | chr1.3:49309222-49309241 | MS.gene23962:intron | 35.0% | |
| TGGAAATGGGAAGTTATAGT+TGG | + | chr1.3:49308820-49308839 | None:intergenic | 35.0% | |
| TGGATCATGAATCAAACTCA+TGG | + | chr1.3:49309354-49309373 | None:intergenic | 35.0% | |
| TGTGTCAAAAGGTTCAACAT+TGG | + | chr1.3:49310044-49310063 | None:intergenic | 35.0% | |
| TTAACGTGGTTTCTATTCGA+TGG | + | chr1.3:49308790-49308809 | None:intergenic | 35.0% | |
| TTGCTCTTTATTCTGATGAG+TGG | - | chr1.3:49309864-49309883 | MS.gene23962:CDS | 35.0% | |
| ! | AACTCCTTACCATGTGTTTT+AGG | - | chr1.3:49309009-49309028 | MS.gene23962:intron | 35.0% |
| ! | ACCAACAATTCATGTTTTGC+AGG | - | chr1.3:49308406-49308425 | MS.gene23962:intron | 35.0% |
| ! | AGTGAACTGGTTGTTTGTTT+TGG | - | chr1.3:49308469-49308488 | MS.gene23962:intron | 35.0% |
| ! | CCCAATACTCTAGTATTTTG+AGG | + | chr1.3:49307344-49307363 | None:intergenic | 35.0% |
| ! | GCTGTTATTAATGTATTGGC+AGG | - | chr1.3:49306979-49306998 | MS.gene23962:CDS | 35.0% |
| ! | GTATGATCCGAATTTGAGAT+TGG | - | chr1.3:49309433-49309452 | MS.gene23962:intron | 35.0% |
| ! | TGGCGAAATATAACGCTTTT+TGG | + | chr1.3:49310237-49310256 | None:intergenic | 35.0% |
| ! | TTGTGATCTAGGATATGAAC+TGG | - | chr1.3:49308116-49308135 | MS.gene23962:CDS | 35.0% |
| ! | TTTTTACTGGTAGCACTCTA+GGG | + | chr1.3:49308379-49308398 | None:intergenic | 35.0% |
| !! | CAAAATACTAGAGTATTGGG+GGG | - | chr1.3:49307344-49307363 | MS.gene23962:intron | 35.0% |
| !! | GATTTTAAGGGCAAAGTTAG+AGG | - | chr1.3:49310016-49310035 | MS.gene23962:intron | 35.0% |
| !! | TAGTTGGTTAGGTTTTAACG+TGG | + | chr1.3:49308804-49308823 | None:intergenic | 35.0% |
| !! | TTATTTTGTGTGACAGGATG+AGG | - | chr1.3:49310204-49310223 | MS.gene23962:CDS | 35.0% |
| !! | TTCTGACCCAAGTATTTTTG+AGG | - | chr1.3:49310111-49310130 | MS.gene23962:intron | 35.0% |
| !!! | TTTTGGTGCTAAATCATCTC+TGG | - | chr1.3:49307688-49307707 | MS.gene23962:intron | 35.0% |
| !!! | TTTTTTACTGGTAGCACTCT+AGG | + | chr1.3:49308380-49308399 | None:intergenic | 35.0% |
| AAAGACTTCACGAACACCAT+CGG | + | chr1.3:49307104-49307123 | None:intergenic | 40.0% | |
| AGGTTGGAGCAGATGAATTT+GGG | - | chr1.3:49309029-49309048 | MS.gene23962:intron | 40.0% | |
| CCAACCTAAAACACATGGTA+AGG | + | chr1.3:49309016-49309035 | None:intergenic | 40.0% | |
| CCATAAACAGAGGAAGATCT+AGG | - | chr1.3:49307505-49307524 | MS.gene23962:intron | 40.0% | |
| CCTAGATCTTCCTCTGTTTA+TGG | + | chr1.3:49307508-49307527 | None:intergenic | 40.0% | |
| CTAATTGTTACTGAAGGGTC+GGG | - | chr1.3:49309742-49309761 | MS.gene23962:intron | 40.0% | |
| GCAAGATGAACATACTTGCA+TGG | + | chr1.3:49309374-49309393 | None:intergenic | 40.0% | |
| GCATATCAGCACTAGGATTT+CGG | + | chr1.3:49309183-49309202 | None:intergenic | 40.0% | |
| GGATCTAGCCGATATCATAA+AGG | - | chr1.3:49309505-49309524 | MS.gene23962:intron | 40.0% | |
| TAGGTAAGGACCATAAACAG+AGG | - | chr1.3:49307495-49307514 | MS.gene23962:intron | 40.0% | |
| TCAAATTCGGATCATACGAG+AGG | + | chr1.3:49309430-49309449 | None:intergenic | 40.0% | |
| TCCTATTTGCATCAAAGTGC+AGG | + | chr1.3:49310327-49310346 | None:intergenic | 40.0% | |
| TCCTGCACTTTGATGCAAAT+AGG | - | chr1.3:49310323-49310342 | MS.gene23962:CDS | 40.0% | |
| TCTGATGATCTCCTAACAGA+AGG | - | chr1.3:49308433-49308452 | MS.gene23962:intron | 40.0% | |
| TGAAGGTCATCATGGATTCA+TGG | - | chr1.3:49308165-49308184 | MS.gene23962:CDS | 40.0% | |
| TGCGATCACAATGATGAACT+GGG | - | chr1.3:49310267-49310286 | MS.gene23962:CDS | 40.0% | |
| TGCTAAATCATCTCTGGCTA+TGG | - | chr1.3:49307694-49307713 | MS.gene23962:intron | 40.0% | |
| TTATGGTCCTTACCTATGCT+TGG | + | chr1.3:49307491-49307510 | None:intergenic | 40.0% | |
| ! | AAGGTATTTGTTGAGCATGC+TGG | - | chr1.3:49307720-49307739 | MS.gene23962:intron | 40.0% |
| ! | ACAGATCTATTGCTGCTTGT+AGG | - | chr1.3:49307271-49307290 | MS.gene23962:CDS | 40.0% |
| ! | CGAATTTGAGATTGGCACTA+TGG | - | chr1.3:49309441-49309460 | MS.gene23962:intron | 40.0% |
| ! | GCATCTTTTGTAGGTAATGC+AGG | + | chr1.3:49310301-49310320 | None:intergenic | 40.0% |
| ! | GTTGAACCTTTTGACACAAC+TGG | - | chr1.3:49310046-49310065 | MS.gene23962:intron | 40.0% |
| ! | TAGGTTGGAGCAGATGAATT+TGG | - | chr1.3:49309028-49309047 | MS.gene23962:intron | 40.0% |
| ! | TGTTCGTGAAGTCTTTGGAA+TGG | - | chr1.3:49307108-49307127 | MS.gene23962:intron | 40.0% |
| !! | CCTTACCATGTGTTTTAGGT+TGG | - | chr1.3:49309013-49309032 | MS.gene23962:intron | 40.0% |
| !! | GCTTGTTGATACCTGTGTTT+TGG | + | chr1.3:49307034-49307053 | None:intergenic | 40.0% |
| !! | TGAAGTCTTTGGAATGGAGA+TGG | - | chr1.3:49307114-49307133 | MS.gene23962:intron | 40.0% |
| !! | TGATGAGTGGACTGAAATGT+TGG | - | chr1.3:49309877-49309896 | MS.gene23962:CDS | 40.0% |
| !! | TGTTGATACCTGTGTTTTGG+AGG | + | chr1.3:49307031-49307050 | None:intergenic | 40.0% |
| !! | TTAAAGGCACCTTCTTGATG+AGG | + | chr1.3:49309234-49309253 | None:intergenic | 40.0% |
| AAACCAGGCAAAGACGCTAT+TGG | + | chr1.3:49308517-49308536 | None:intergenic | 45.0% | |
| AAGGTAGAATGGGGTGGAAA+TGG | + | chr1.3:49308834-49308853 | None:intergenic | 45.0% | |
| ACGTTGATACATCTGGCATG+CGG | - | chr1.3:49309083-49309102 | MS.gene23962:intron | 45.0% | |
| AGGGTTTGCACAAGGTTGAA+GGG | + | chr1.3:49307152-49307171 | None:intergenic | 45.0% | |
| AGGTAGAATGGGGTGGAAAT+GGG | + | chr1.3:49308833-49308852 | None:intergenic | 45.0% | |
| CAAGAGTCCTTACCTATGCT+TGG | + | chr1.3:49307465-49307484 | None:intergenic | 45.0% | |
| CAAGGTTGAAGGGCTTCAAT+AGG | + | chr1.3:49307142-49307161 | None:intergenic | 45.0% | |
| CGATCACAATGATGAACTGG+GGG | - | chr1.3:49310269-49310288 | MS.gene23962:CDS | 45.0% | |
| CTAGGAGTTTCCTTGAAACC+AGG | + | chr1.3:49308532-49308551 | None:intergenic | 45.0% | |
| CTATTCTCCTCTCCGAGTAA+GGG | - | chr1.3:49307240-49307259 | MS.gene23962:CDS | 45.0% | |
| CTGCAACGAAACAAGTGAAC+TGG | - | chr1.3:49308456-49308475 | MS.gene23962:intron | 45.0% | |
| CTGCGATCACAATGATGAAC+TGG | - | chr1.3:49310266-49310285 | MS.gene23962:CDS | 45.0% | |
| CTGCTCCAACCTAAAACACA+TGG | + | chr1.3:49309021-49309040 | None:intergenic | 45.0% | |
| CTGTCAAGTTCACCCTTACT+CGG | + | chr1.3:49307255-49307274 | None:intergenic | 45.0% | |
| CTTCTGCATGAAGGTCATCA+TGG | - | chr1.3:49308157-49308176 | MS.gene23962:CDS | 45.0% | |
| CTTGTGTCCAAGCATAGGTA+AGG | - | chr1.3:49307455-49307474 | MS.gene23962:intron | 45.0% | |
| GACTTCTTGTGTCCAAGCAT+AGG | - | chr1.3:49307450-49307469 | MS.gene23962:intron | 45.0% | |
| GAGAGATGGAAGATTGATGC+TGG | - | chr1.3:49307316-49307335 | MS.gene23962:intron | 45.0% | |
| GAGATGAAAAGGATGTCTCG+TGG | + | chr1.3:49307191-49307210 | None:intergenic | 45.0% | |
| GATCACAATGATGAACTGGG+GGG | - | chr1.3:49310270-49310289 | MS.gene23962:CDS | 45.0% | |
| GATGGTGTTCGTGAAGTCTT+TGG | - | chr1.3:49307103-49307122 | MS.gene23962:intron | 45.0% | |
| GCGATCACAATGATGAACTG+GGG | - | chr1.3:49310268-49310287 | MS.gene23962:CDS | 45.0% | |
| GGTCATCATGGATTCATGGT+TGG | - | chr1.3:49308169-49308188 | MS.gene23962:CDS | 45.0% | |
| GGTTTCAAGGAAACTCCTAG+TGG | - | chr1.3:49308532-49308551 | MS.gene23962:intron | 45.0% | |
| TCATCTCTGGCTATGGTTGA+AGG | - | chr1.3:49307701-49307720 | MS.gene23962:intron | 45.0% | |
| TGACTTTGGCAAGCTTACCT+TGG | + | chr1.3:49309785-49309804 | None:intergenic | 45.0% | |
| TGGCAACCTTTAATCCACGA+GGG | + | chr1.3:49307171-49307190 | None:intergenic | 45.0% | |
| TGTGATCGCAGCACATACAT+TGG | + | chr1.3:49310257-49310276 | None:intergenic | 45.0% | |
| TTTCGTTGCAGCCTTCTGTT+AGG | + | chr1.3:49308447-49308466 | None:intergenic | 45.0% | |
| ! | ACAGAGGAAGATCTAGGACT+AGG | - | chr1.3:49307511-49307530 | MS.gene23962:intron | 45.0% |
| ! | CTGGTGATGCATTTGTTAGC+GGG | - | chr1.3:49310071-49310090 | MS.gene23962:intron | 45.0% |
| ! | GCTGGTGATGCATTTGTTAG+CGG | - | chr1.3:49310070-49310089 | MS.gene23962:intron | 45.0% |
| ! | TCCAGAAGCATATCAGCACT+AGG | + | chr1.3:49309190-49309209 | None:intergenic | 45.0% |
| ! | TGCAAACCCTCGTGGATTAA+AGG | - | chr1.3:49307162-49307181 | MS.gene23962:intron | 45.0% |
| ! | TGCAGGACAGCATCTTTTGT+AGG | + | chr1.3:49310310-49310329 | None:intergenic | 45.0% |
| !! | AATACTAGAGTATTGGGGGG+AGG | - | chr1.3:49307347-49307366 | MS.gene23962:intron | 45.0% |
| !! | TCCTAGTGCTGATATGCTTC+TGG | - | chr1.3:49309186-49309205 | MS.gene23962:intron | 45.0% |
| !!! | ACCTGTGTTTTGGAGGACAA+CGG | + | chr1.3:49307024-49307043 | None:intergenic | 45.0% |
| AAAAAAAGCCGATGGGGTGC+TGG | + | chr1.3:49309122-49309141 | None:intergenic | 50.0% | |
| AAGTTCACCCTTACTCGGAG+AGG | + | chr1.3:49307250-49307269 | None:intergenic | 50.0% | |
| AATCCACGAGGGTTTGCACA+AGG | + | chr1.3:49307160-49307179 | None:intergenic | 50.0% | |
| AGCGTCTTTGCCTGGTTTCA+AGG | - | chr1.3:49308519-49308538 | MS.gene23962:intron | 50.0% | |
| AGGCAAAGACGCTATTGGCA+TGG | + | chr1.3:49308512-49308531 | None:intergenic | 50.0% | |
| ATGCCAATAGCGTCTTTGCC+TGG | - | chr1.3:49308511-49308530 | MS.gene23962:intron | 50.0% | |
| ATTGTTACTGAAGGGTCGGG+AGG | - | chr1.3:49309745-49309764 | MS.gene23962:intron | 50.0% | |
| CATCGGTCAATGTCAACTGC+AGG | + | chr1.3:49307087-49307106 | None:intergenic | 50.0% | |
| CCAGCACCAGTTGTGTCAAA+AGG | + | chr1.3:49310055-49310074 | None:intergenic | 50.0% | |
| CTGCAGTTGACATTGACCGA+TGG | - | chr1.3:49307085-49307104 | MS.gene23962:intron | 50.0% | |
| GAGGGTTTGCACAAGGTTGA+AGG | + | chr1.3:49307153-49307172 | None:intergenic | 50.0% | |
| GCAGTCGGCATCTCTAAGTT+AGG | - | chr1.3:49308571-49308590 | MS.gene23962:intron | 50.0% | |
| GCTATTCTCCTCTCCGAGTA+AGG | - | chr1.3:49307239-49307258 | MS.gene23962:CDS | 50.0% | |
| GGACTCTTGTGTCCAAGCAT+AGG | - | chr1.3:49307476-49307495 | MS.gene23962:intron | 50.0% | |
| GGGAAAAAGGTAGAATGGGG+TGG | + | chr1.3:49308840-49308859 | None:intergenic | 50.0% | |
| GTCGGCATCTCTAAGTTAGG+TGG | - | chr1.3:49308574-49308593 | MS.gene23962:intron | 50.0% | |
| GTGGCAACCTTTAATCCACG+AGG | + | chr1.3:49307172-49307191 | None:intergenic | 50.0% | |
| TATACCAGTTCGAGCATCCC+AGG | + | chr1.3:49309474-49309493 | None:intergenic | 50.0% | |
| TCCGTTGTCCTCCAAAACAC+AGG | - | chr1.3:49307020-49307039 | MS.gene23962:CDS | 50.0% | |
| TTCTAATGCCAGCACCCCAT+CGG | - | chr1.3:49309111-49309130 | MS.gene23962:intron | 50.0% | |
| TTTCAATCCCTGGACCTGGA+GGG | + | chr1.3:49307057-49307076 | None:intergenic | 50.0% | |
| ! | CCTTTTGACACAACTGGTGC+TGG | - | chr1.3:49310052-49310071 | MS.gene23962:intron | 50.0% |
| !! | GGACTAGCTGATGATCTCAG+CGG | - | chr1.3:49307368-49307387 | MS.gene23962:intron | 50.0% |
| AGGCACCTGCTTTCAATCCC+TGG | + | chr1.3:49307067-49307086 | None:intergenic | 55.0% | |
| AGGTATCAACAAGCCCCTCC+AGG | - | chr1.3:49307040-49307059 | MS.gene23962:CDS | 55.0% | |
| CAACCTTGTGCAAACCCTCG+TGG | - | chr1.3:49307154-49307173 | MS.gene23962:intron | 55.0% | |
| CAGGTCCAGGGATTGAAAGC+AGG | - | chr1.3:49307059-49307078 | MS.gene23962:CDS | 55.0% | |
| CTGCTTTCAATCCCTGGACC+TGG | + | chr1.3:49307061-49307080 | None:intergenic | 55.0% | |
| CTTTCAATCCCTGGACCTGG+AGG | + | chr1.3:49307058-49307077 | None:intergenic | 55.0% | |
| TAGTGGTGCTCCTGCAAACG+TGG | - | chr1.3:49308549-49308568 | MS.gene23962:intron | 55.0% | |
| TTCAATCCCTGGACCTGGAG+GGG | + | chr1.3:49307056-49307075 | None:intergenic | 55.0% | |
| !! | ACGTTTGCAGGAGCACCACT+AGG | + | chr1.3:49308550-49308569 | None:intergenic | 55.0% |
| AACAAGCCCCTCCAGGTCCA+GGG | - | chr1.3:49307047-49307066 | MS.gene23962:CDS | 60.0% | |
| ACAGCCTGGGATGCTCGAAC+TGG | - | chr1.3:49309467-49309486 | MS.gene23962:intron | 60.0% | |
| GCTCCTGCAAACGTGGCAGT+CGG | - | chr1.3:49308556-49308575 | MS.gene23962:intron | 60.0% | |
| GGCACTATGGCCAACAGCCT+GGG | - | chr1.3:49309454-49309473 | MS.gene23962:intron | 60.0% | |
| GTTCGAGCATCCCAGGCTGT+TGG | + | chr1.3:49309467-49309486 | None:intergenic | 60.0% | |
| TGGCACTATGGCCAACAGCC+TGG | - | chr1.3:49309453-49309472 | MS.gene23962:intron | 60.0% | |
| ! | ATGCCGACTGCCACGTTTGC+AGG | + | chr1.3:49308562-49308581 | None:intergenic | 60.0% |
| CAACAAGCCCCTCCAGGTCC+AGG | - | chr1.3:49307046-49307065 | MS.gene23962:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 49306953 | 49310363 | 49306953 | ID=MS.gene23962 |
| chr1.3 | mRNA | 49306953 | 49310363 | 49306953 | ID=MS.gene23962.t1;Parent=MS.gene23962 |
| chr1.3 | exon | 49310133 | 49310363 | 49310133 | ID=MS.gene23962.t1.exon1;Parent=MS.gene23962.t1 |
| chr1.3 | CDS | 49310133 | 49310363 | 49310133 | ID=cds.MS.gene23962.t1;Parent=MS.gene23962.t1 |
| chr1.3 | exon | 49309845 | 49310023 | 49309845 | ID=MS.gene23962.t1.exon2;Parent=MS.gene23962.t1 |
| chr1.3 | CDS | 49309845 | 49310023 | 49309845 | ID=cds.MS.gene23962.t1;Parent=MS.gene23962.t1 |
| chr1.3 | exon | 49309538 | 49309593 | 49309538 | ID=MS.gene23962.t1.exon3;Parent=MS.gene23962.t1 |
| chr1.3 | CDS | 49309538 | 49309593 | 49309538 | ID=cds.MS.gene23962.t1;Parent=MS.gene23962.t1 |
| chr1.3 | exon | 49308698 | 49308888 | 49308698 | ID=MS.gene23962.t1.exon4;Parent=MS.gene23962.t1 |
| chr1.3 | CDS | 49308698 | 49308888 | 49308698 | ID=cds.MS.gene23962.t1;Parent=MS.gene23962.t1 |
| chr1.3 | exon | 49308073 | 49308285 | 49308073 | ID=MS.gene23962.t1.exon5;Parent=MS.gene23962.t1 |
| chr1.3 | CDS | 49308073 | 49308285 | 49308073 | ID=cds.MS.gene23962.t1;Parent=MS.gene23962.t1 |
| chr1.3 | exon | 49307790 | 49307987 | 49307790 | ID=MS.gene23962.t1.exon6;Parent=MS.gene23962.t1 |
| chr1.3 | CDS | 49307790 | 49307987 | 49307790 | ID=cds.MS.gene23962.t1;Parent=MS.gene23962.t1 |
| chr1.3 | exon | 49307530 | 49307670 | 49307530 | ID=MS.gene23962.t1.exon7;Parent=MS.gene23962.t1 |
| chr1.3 | CDS | 49307530 | 49307670 | 49307530 | ID=cds.MS.gene23962.t1;Parent=MS.gene23962.t1 |
| chr1.3 | exon | 49307184 | 49307300 | 49307184 | ID=MS.gene23962.t1.exon8;Parent=MS.gene23962.t1 |
| chr1.3 | CDS | 49307184 | 49307300 | 49307184 | ID=cds.MS.gene23962.t1;Parent=MS.gene23962.t1 |
| chr1.3 | exon | 49306953 | 49307096 | 49306953 | ID=MS.gene23962.t1.exon9;Parent=MS.gene23962.t1 |
| chr1.3 | CDS | 49306953 | 49307096 | 49306953 | ID=cds.MS.gene23962.t1;Parent=MS.gene23962.t1 |
| Gene Sequence |
| Protein sequence |
