AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23985

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23985.t1 MTR_1g069575 95.455 396 14 1 12 403 12 407 0.0 761
MS.gene23985.t1 MTR_4g084040 41.867 332 170 6 81 395 30 355 3.76e-78 245
MS.gene23985.t1 MTR_4g084040 41.994 331 169 6 82 395 1 325 3.76e-78 244
MS.gene23985.t1 MTR_4g084040 46.352 233 121 1 163 395 31 259 1.22e-66 213
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23985.t1 AT5G44000 68.750 352 100 3 56 398 44 394 9.13e-180 506
MS.gene23985.t1 AT4G19880 40.058 342 182 5 70 394 20 355 4.55e-74 235
MS.gene23985.t1 AT5G45020 38.973 331 179 5 82 395 1 325 2.37e-70 224
MS.gene23985.t1 AT5G45020 38.973 331 179 5 82 395 1 325 2.37e-70 224
MS.gene23985.t1 AT5G44990 39.432 317 169 5 95 394 11 321 4.01e-69 222
MS.gene23985.t1 AT5G44990 39.432 317 169 5 95 394 11 321 4.01e-69 222
MS.gene23985.t1 AT4G19880 37.228 368 182 6 70 394 20 381 1.95e-68 221
MS.gene23985.t1 AT5G44990 42.553 235 131 1 164 398 12 242 5.12e-59 193
MS.gene23985.t1 AT4G19880 39.041 292 153 6 70 340 20 307 3.08e-56 187
MS.gene23985.t1 AT5G44990 37.546 269 140 6 95 346 11 268 4.48e-54 181

Find 134 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTCTATCATATGCTTCT+TGG 0.200519 1.3:+49015841 None:intergenic
TCTTTCACCACCTGAATTAA+AGG 0.217062 1.3:-49016191 MS.gene23985:CDS
TGAACCAGTATTTGTTAAAT+AGG 0.222094 1.3:-49015356 None:intergenic
TTCATTACATACAACATCTT+TGG 0.252307 1.3:+49016279 None:intergenic
TCAATCTTATCCTTTAATTC+AGG 0.265131 1.3:+49016181 None:intergenic
ATTACAAGTATCTGCAACTT+TGG 0.276080 1.3:+49015516 None:intergenic
GTTCTGTTACAAAACTTCTC+TGG 0.315841 1.3:-49016732 MS.gene23985:CDS
ATTGCCTATTTAACAAATAC+TGG 0.329847 1.3:+49015352 None:intergenic
ATTCAAACGGGTCGGTAATA+CGG 0.330260 1.3:-49016425 MS.gene23985:CDS
ATAATTCAATTGTTTAATTC+CGG 0.334525 1.3:-49016247 MS.gene23985:CDS
TAATTCAATTGTTTAATTCC+GGG 0.335485 1.3:-49016246 MS.gene23985:CDS
GAGCTGCCACGTGGAGTTCC+AGG 0.336140 1.3:+49016663 None:intergenic
TACACACCGTTGTTCACGTT+TGG 0.336302 1.3:+49016136 None:intergenic
TCTGAAGTTGAAGGCATAAT+TGG 0.346959 1.3:+49015430 None:intergenic
GACAAGGTGGTGTGAGGAAG+AGG 0.351548 1.3:+49016864 None:intergenic
ATACTCATATAACTTCTTCT+TGG 0.353135 1.3:+49015668 None:intergenic
TTGTTTAATTCCGGGTTAAA+CGG 0.357379 1.3:-49016238 MS.gene23985:CDS
TCATGTAATTAGTCCGAGTT+TGG 0.362164 1.3:-49016401 MS.gene23985:CDS
TCCCTGGATTGAGAGGAAAA+AGG 0.376331 1.3:+49015461 None:intergenic
CTGGGGTCGGTCCCTCCCAC+CGG 0.396579 1.3:-49016713 MS.gene23985:CDS
TTACAAGTATCTGCAACTTT+GGG 0.397228 1.3:+49015517 None:intergenic
TCCAGTGTCAGTTGCGTCGC+CGG 0.397459 1.3:-49016467 MS.gene23985:CDS
AGACTTTAAAAGAAGTATAT+AGG 0.397864 1.3:-49016360 MS.gene23985:CDS
TTCTGTTACAAAACTTCTCT+GGG 0.401395 1.3:-49016731 MS.gene23985:CDS
GTCTGTTTACTACTTTGATT+CGG 0.402179 1.3:-49015725 MS.gene23985:CDS
CGCCGGGAATGGATGGGTCG+TGG 0.403839 1.3:-49016450 MS.gene23985:CDS
CTACATGCGTCACATTTATC+AGG 0.404982 1.3:-49015631 MS.gene23985:intron
GTTGCGTCGCCGGGAATGGA+TGG 0.406208 1.3:-49016457 MS.gene23985:CDS
GTCAGTTGCGTCGCCGGGAA+TGG 0.413562 1.3:-49016461 MS.gene23985:CDS
TTCAAACGGGTCGGTAATAC+GGG 0.417761 1.3:-49016424 MS.gene23985:CDS
AAGATCCAACTCAGGGTTAC+GGG 0.418289 1.3:+49016210 None:intergenic
TGTTTAATTCCGGGTTAAAC+GGG 0.419709 1.3:-49016237 MS.gene23985:CDS
CGACAACCACTTTCCGCAAC+CGG 0.426378 1.3:-49016831 MS.gene23985:CDS
ATTTCATGCTCTGAAGTTGA+AGG 0.430518 1.3:+49015421 None:intergenic
GCTTCAAAATTCCGATTCTC+TGG 0.443348 1.3:-49016589 MS.gene23985:CDS
CTGGTTCAGTTGATGATGAT+AGG 0.444961 1.3:+49015371 None:intergenic
AGAACGGATGAGGGAACTTC+CGG 0.445710 1.3:+49016801 None:intergenic
AATTAGTCCGAGTTTGGATA+AGG 0.450978 1.3:-49016395 MS.gene23985:CDS
CTGAGAAGTGGTGGGTATGA+TGG 0.455128 1.3:-49016337 MS.gene23985:CDS
TTCTTTGCAGACCTCATGGC+AGG 0.455813 1.3:-49015399 MS.gene23985:CDS
GGTGAGCCCACGGGCATGGC+AGG 0.455919 1.3:+49016533 None:intergenic
TTCCGGTGAGTCTCCGGTTG+CGG 0.460175 1.3:+49016818 None:intergenic
TCCCACGACCCATCCATTCC+CGG 0.466688 1.3:+49016448 None:intergenic
ACGTGAACAACGGTGTGTAT+AGG 0.467210 1.3:-49016132 MS.gene23985:intron
TCACAACCGTCCGCACCGCC+TGG 0.467210 1.3:-49016681 MS.gene23985:CDS
TGTTGTCAAGGGACATAGTC+AGG 0.469351 1.3:+49016776 None:intergenic
CTCGCTCCCTCCGATCCCAC+TGG 0.477182 1.3:-49016628 MS.gene23985:CDS
ATCTTATCCTTTAATTCAGG+TGG 0.486788 1.3:+49016184 None:intergenic
CCCGGCGACGCAACTGACAC+TGG 0.487032 1.3:+49016466 None:intergenic
GGGAACTTCCGGTGAGTCTC+CGG 0.493773 1.3:+49016812 None:intergenic
AAAGATCCAACTCAGGGTTA+CGG 0.495880 1.3:+49016209 None:intergenic
GTATATAGGCTGAGAAGTGG+TGG 0.499430 1.3:-49016346 MS.gene23985:CDS
GTACGGTGAGCCCACGGGCA+TGG 0.499751 1.3:+49016529 None:intergenic
CGTTGGCCTGCCATGCCCGT+GGG 0.505206 1.3:-49016539 MS.gene23985:CDS
TAGTCAGGCGAGAACGGATG+AGG 0.506765 1.3:+49016791 None:intergenic
GGAATATCCGCCAGTGGGAT+CGG 0.508614 1.3:+49016618 None:intergenic
TGGTTCAGTTGATGATGATA+GGG 0.511787 1.3:+49015372 None:intergenic
TGGGTCGTGGGAATTCAAAC+GGG 0.519151 1.3:-49016437 MS.gene23985:CDS
ATGGGTCGTGGGAATTCAAA+CGG 0.519328 1.3:-49016438 MS.gene23985:CDS
CCAGTGTCAGTTGCGTCGCC+GGG 0.521031 1.3:-49016466 MS.gene23985:CDS
ACGTTGGCCTGCCATGCCCG+TGG 0.522921 1.3:-49016540 MS.gene23985:CDS
AGTCCGCGCACTCAAAGGCT+TGG 0.523773 1.3:-49016500 MS.gene23985:CDS
TAATTCCGGGTTAAACGGGT+TGG 0.524230 1.3:-49016233 MS.gene23985:CDS
CTGATAAATGTGACGCATGT+AGG 0.524638 1.3:+49015632 None:intergenic
CTCATAGTCCGCGCACTCAA+AGG 0.525005 1.3:-49016505 MS.gene23985:CDS
GCCGGGAATGGATGGGTCGT+GGG 0.525533 1.3:-49016449 MS.gene23985:CDS
TGGGGTCGGTCCCTCCCACC+GGG 0.530372 1.3:-49016712 MS.gene23985:CDS
TTCCGCAACCGGAGACTCAC+CGG 0.534590 1.3:-49016820 MS.gene23985:CDS
GAAATTCTTTGCAGACCTCA+TGG 0.534960 1.3:-49015403 MS.gene23985:CDS
TGAATTAAAGGATAAGATTG+AGG 0.535509 1.3:-49016179 MS.gene23985:CDS
TCGGTGGTGGACCAGAGAAT+CGG 0.535907 1.3:+49016578 None:intergenic
CGGTTGCGGAAAGTGGTTGT+CGG 0.536348 1.3:+49016832 None:intergenic
GACGAGAAGACCCGGTGGGA+GGG 0.537088 1.3:+49016702 None:intergenic
AAGAGGAATTGTTGTTGTCA+AGG 0.537371 1.3:+49016764 None:intergenic
TTGTACACTAGATGAGTTGG+AGG 0.544163 1.3:-49015805 MS.gene23985:CDS
GGGACATAGTCAGGCGAGAA+CGG 0.547841 1.3:+49016785 None:intergenic
TCAAATTCTCGCTATTTGTG+TGG 0.552267 1.3:-49015774 MS.gene23985:CDS
TTGCGTCGCCGGGAATGGAT+GGG 0.554498 1.3:-49016456 MS.gene23985:CDS
GAGTCTCCGGTTGCGGAAAG+TGG 0.555872 1.3:+49016825 None:intergenic
AACAGAACTTAGTAGGGAAG+AGG 0.556724 1.3:+49016747 None:intergenic
AGAGGAATTGTTGTTGTCAA+GGG 0.560702 1.3:+49016765 None:intergenic
CTTCCAAGCCTTTGAGTGCG+CGG 0.563636 1.3:+49016497 None:intergenic
ACGGGCCAACCCGTTTAACC+CGG 0.566457 1.3:+49016228 None:intergenic
TTACAAAACTTCTCTGGGGT+CGG 0.567115 1.3:-49016726 MS.gene23985:CDS
AGGTGGAGACCACTCGGTGG+TGG 0.569761 1.3:+49016565 None:intergenic
TATATAGGCTGAGAAGTGGT+GGG 0.570077 1.3:-49016345 MS.gene23985:CDS
GGAGTTCCAGGCGGTGCGGA+CGG 0.570604 1.3:+49016675 None:intergenic
GTTGGCCCGTAACCCTGAGT+TGG 0.571773 1.3:-49016215 MS.gene23985:CDS
GAGTCTTTGTTCCACAACAT+TGG 0.572372 1.3:+49016301 None:intergenic
CTAATGCTCCCTGGATTGAG+AGG 0.577711 1.3:+49015454 None:intergenic
ATGAGAGTACGGTGAGCCCA+CGG 0.579375 1.3:+49016523 None:intergenic
CCATTCGCCTTATCCAAACT+CGG 0.588222 1.3:+49016388 None:intergenic
CCGAGTTTGGATAAGGCGAA+TGG 0.588244 1.3:-49016388 MS.gene23985:CDS
GATCCACTGTGCCAATGTTG+TGG 0.590586 1.3:-49016312 MS.gene23985:CDS
GGTGGTGAAAGATCCAACTC+AGG 0.593310 1.3:+49016202 None:intergenic
CGACGCAACTGACACTGGAA+CGG 0.595413 1.3:+49016471 None:intergenic
TGAGAGTACGGTGAGCCCAC+GGG 0.597158 1.3:+49016524 None:intergenic
GAAGTATATAGGCTGAGAAG+TGG 0.600922 1.3:-49016349 MS.gene23985:CDS
TATCCGCCAGTGGGATCGGA+GGG 0.602717 1.3:+49016622 None:intergenic
ATAATTGGTCTAATGCTCCC+TGG 0.605043 1.3:+49015445 None:intergenic
ACGGTTGTGACGAGAAGACC+CGG 0.609002 1.3:+49016694 None:intergenic
ACGTAGAGGTGGAGACCACT+CGG 0.613297 1.3:+49016559 None:intergenic
ACGCATGTAGGCATGTAGAT+TGG 0.613504 1.3:+49015644 None:intergenic
ATGGCAGGCCAACGTAGAGG+TGG 0.617427 1.3:+49016548 None:intergenic
TAAAGGATAAGATTGAGGAA+TGG 0.619218 1.3:-49016174 MS.gene23985:CDS
TGACGAGAAGACCCGGTGGG+AGG 0.619484 1.3:+49016701 None:intergenic
ACAAGGTGGTGTGAGGAAGA+GGG 0.626050 1.3:+49016865 None:intergenic
GTGCGCGGACTATGAGAGTA+CGG 0.628813 1.3:+49016512 None:intergenic
GCTCCCTCCGATCCCACTGG+CGG 0.629484 1.3:-49016625 MS.gene23985:CDS
TCTTTGCAGACCTCATGGCA+GGG 0.630240 1.3:-49015398 MS.gene23985:CDS
ATATCCGCCAGTGGGATCGG+AGG 0.630429 1.3:+49016621 None:intergenic
AGTCAGGCGAGAACGGATGA+GGG 0.643628 1.3:+49016792 None:intergenic
GGCATGGCAGGCCAACGTAG+AGG 0.643969 1.3:+49016545 None:intergenic
TTCTCTGGTCCACCACCGAG+TGG 0.644068 1.3:-49016574 MS.gene23985:CDS
TTGCGGAAAGTGGTTGTCGG+AGG 0.645779 1.3:+49016835 None:intergenic
AATGACGACAAGGTGGTGTG+AGG 0.649943 1.3:+49016858 None:intergenic
TCGTGGGAATTCAAACGGGT+CGG 0.657856 1.3:-49016433 MS.gene23985:CDS
GGTCTGGAATATCCGCCAGT+GGG 0.659584 1.3:+49016613 None:intergenic
GTTCCACAACATTGGCACAG+TGG 0.661542 1.3:+49016309 None:intergenic
GGGTCTGGAATATCCGCCAG+TGG 0.663373 1.3:+49016612 None:intergenic
GTGGTGAAAGATCCAACTCA+GGG 0.663800 1.3:+49016203 None:intergenic
TTGTCGGAGGAATGACGACA+AGG 0.674643 1.3:+49016848 None:intergenic
ACGTGGAGTTCCAGGCGGTG+CGG 0.675896 1.3:+49016671 None:intergenic
AGTGGTCTCCACCTCTACGT+TGG 0.677828 1.3:-49016556 MS.gene23985:CDS
AGACATCATGAGCTGCCACG+TGG 0.697920 1.3:+49016654 None:intergenic
GATAGGGATTCCCTGCCATG+AGG 0.701385 1.3:+49015388 None:intergenic
CTGCCACGTGGAGTTCCAGG+CGG 0.705558 1.3:+49016666 None:intergenic
ATATATCCAAACGTGAACAA+CGG 0.707057 1.3:-49016142 MS.gene23985:CDS
TTGTGACGAGAAGACCCGGT+GGG 0.717453 1.3:+49016698 None:intergenic
TCTGTTACAAAACTTCTCTG+GGG 0.722297 1.3:-49016730 MS.gene23985:CDS
TCGGAGGAATGACGACAAGG+TGG 0.725756 1.3:+49016851 None:intergenic
GCACCGCCTGGAACTCCACG+TGG 0.732654 1.3:-49016669 MS.gene23985:CDS
GTTGTGACGAGAAGACCCGG+TGG 0.740905 1.3:+49016697 None:intergenic
TAGAGGTGGAGACCACTCGG+TGG 0.771659 1.3:+49016562 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTCAATTGTTTAATTC+CGG - chr1.3:49015996-49016015 MS.gene23985:intron 15.0%
!!! TTGTAATTTTCAAGAAATTA+TGG - chr1.3:49016743-49016762 MS.gene23985:CDS 15.0%
!! TAATTCAATTGTTTAATTCC+GGG - chr1.3:49015997-49016016 MS.gene23985:intron 20.0%
!!! AATTTTCAAGAAATTATGGA+TGG - chr1.3:49016747-49016766 MS.gene23985:CDS 20.0%
!!! AGACTTTAAAAGAAGTATAT+AGG - chr1.3:49015883-49015902 MS.gene23985:intron 20.0%
! ATACTCATATAACTTCTTCT+TGG + chr1.3:49016578-49016597 None:intergenic 25.0%
! TCAATCTTATCCTTTAATTC+AGG + chr1.3:49016065-49016084 None:intergenic 25.0%
! TGAATTAAAGGATAAGATTG+AGG - chr1.3:49016064-49016083 MS.gene23985:intron 25.0%
! TTCATTACATACAACATCTT+TGG + chr1.3:49015967-49015986 None:intergenic 25.0%
!! TTTTGTAACAGAACTTAGTA+GGG + chr1.3:49015505-49015524 None:intergenic 25.0%
ATATATCCAAACGTGAACAA+CGG - chr1.3:49016101-49016120 MS.gene23985:intron 30.0%
ATCTTATCCTTTAATTCAGG+TGG + chr1.3:49016062-49016081 None:intergenic 30.0%
ATTACAAGTATCTGCAACTT+TGG + chr1.3:49016730-49016749 None:intergenic 30.0%
CAATGAGTTTGAGAAAATCA+CGG - chr1.3:49016163-49016182 MS.gene23985:CDS 30.0%
GCTTTGCTCAAAAAATGTTT+AGG - chr1.3:49016640-49016659 MS.gene23985:CDS 30.0%
GTCTGTTTACTACTTTGATT+CGG - chr1.3:49016518-49016537 MS.gene23985:CDS 30.0%
TAAAGGATAAGATTGAGGAA+TGG - chr1.3:49016069-49016088 MS.gene23985:intron 30.0%
TTACAAGTATCTGCAACTTT+GGG + chr1.3:49016729-49016748 None:intergenic 30.0%
TTCTGTTACAAAACTTCTCT+GGG - chr1.3:49015512-49015531 MS.gene23985:CDS 30.0%
TTGTTTAATTCCGGGTTAAA+CGG - chr1.3:49016005-49016024 MS.gene23985:intron 30.0%
! GTTTTGTAACAGAACTTAGT+AGG + chr1.3:49015506-49015525 None:intergenic 30.0%
AATTAGTCCGAGTTTGGATA+AGG - chr1.3:49015848-49015867 MS.gene23985:CDS 35.0%
ATATTATGTGTTTCCTGCCT+TGG - chr1.3:49016696-49016715 MS.gene23985:CDS 35.0%
GTTCTGTTACAAAACTTCTC+TGG - chr1.3:49015511-49015530 MS.gene23985:CDS 35.0%
TCAAATTCTCGCTATTTGTG+TGG - chr1.3:49016469-49016488 MS.gene23985:CDS 35.0%
TCATGTAATTAGTCCGAGTT+TGG - chr1.3:49015842-49015861 MS.gene23985:CDS 35.0%
TCTGTTACAAAACTTCTCTG+GGG - chr1.3:49015513-49015532 MS.gene23985:CDS 35.0%
TCTTTCACCACCTGAATTAA+AGG - chr1.3:49016052-49016071 MS.gene23985:intron 35.0%
TGAATTGCAATTTGCATTGC+AGG - chr1.3:49016362-49016381 MS.gene23985:CDS 35.0%
TGTTTAATTCCGGGTTAAAC+GGG - chr1.3:49016006-49016025 MS.gene23985:intron 35.0%
! AAGAGGAATTGTTGTTGTCA+AGG + chr1.3:49015482-49015501 None:intergenic 35.0%
! AGAGGAATTGTTGTTGTCAA+GGG + chr1.3:49015481-49015500 None:intergenic 35.0%
! GTTTTGTACACTAGATGAGT+TGG - chr1.3:49016435-49016454 MS.gene23985:CDS 35.0%
! TCTGAAGTTGAAGGCATAAT+TGG + chr1.3:49016816-49016835 None:intergenic 35.0%
!! AGAGAATCGGAATTTTGAAG+CGG + chr1.3:49015655-49015674 None:intergenic 35.0%
!! ATTTCATGCTCTGAAGTTGA+AGG + chr1.3:49016825-49016844 None:intergenic 35.0%
!! CTGAAGAAGTATTCAAAGTG+AGG + chr1.3:49016298-49016317 None:intergenic 35.0%
!! TGGTTCAGTTGATGATGATA+GGG + chr1.3:49016874-49016893 None:intergenic 35.0%
AAAGATCCAACTCAGGGTTA+CGG + chr1.3:49016037-49016056 None:intergenic 40.0%
AACAGAACTTAGTAGGGAAG+AGG + chr1.3:49015499-49015518 None:intergenic 40.0%
ATTCAAACGGGTCGGTAATA+CGG - chr1.3:49015818-49015837 MS.gene23985:CDS 40.0%
CTACATGCGTCACATTTATC+AGG - chr1.3:49016612-49016631 MS.gene23985:CDS 40.0%
CTGATAAATGTGACGCATGT+AGG + chr1.3:49016614-49016633 None:intergenic 40.0%
CTGCTCTATCATATGCTTCT+TGG + chr1.3:49016405-49016424 None:intergenic 40.0%
GAAATTCTTTGCAGACCTCA+TGG - chr1.3:49016840-49016859 MS.gene23985:CDS 40.0%
GAAGTATATAGGCTGAGAAG+TGG - chr1.3:49015894-49015913 MS.gene23985:intron 40.0%
GAGTCTTTGTTCCACAACAT+TGG + chr1.3:49015945-49015964 None:intergenic 40.0%
GCTTCAAAATTCCGATTCTC+TGG - chr1.3:49015654-49015673 MS.gene23985:CDS 40.0%
TATATAGGCTGAGAAGTGGT+GGG - chr1.3:49015898-49015917 MS.gene23985:intron 40.0%
TATCATTGTAGCGCAAGTCA+TGG - chr1.3:49016212-49016231 MS.gene23985:CDS 40.0%
! ATAATTGGTCTAATGCTCCC+TGG + chr1.3:49016801-49016820 None:intergenic 40.0%
! GAAAATCACGGTGACACTTT+TGG - chr1.3:49016175-49016194 MS.gene23985:CDS 40.0%
! TTGTACACTAGATGAGTTGG+AGG - chr1.3:49016438-49016457 MS.gene23985:CDS 40.0%
!! CTGGTTCAGTTGATGATGAT+AGG + chr1.3:49016875-49016894 None:intergenic 40.0%
!! TTACAAAACTTCTCTGGGGT+CGG - chr1.3:49015517-49015536 MS.gene23985:CDS 40.0%
!!! GAGAATCGGAATTTTGAAGC+GGG + chr1.3:49015654-49015673 None:intergenic 40.0%
AAGATCCAACTCAGGGTTAC+GGG + chr1.3:49016036-49016055 None:intergenic 45.0%
ACGCATGTAGGCATGTAGAT+TGG + chr1.3:49016602-49016621 None:intergenic 45.0%
ACGTGAACAACGGTGTGTAT+AGG - chr1.3:49016111-49016130 MS.gene23985:intron 45.0%
ATGGGTCGTGGGAATTCAAA+CGG - chr1.3:49015805-49015824 MS.gene23985:CDS 45.0%
CCATTCGCCTTATCCAAACT+CGG + chr1.3:49015858-49015877 None:intergenic 45.0%
CCCTGGATTGAGAGGAAAAA+GGG + chr1.3:49016784-49016803 None:intergenic 45.0%
GCAATTTGCATTGCAGGTGT+GGG - chr1.3:49016368-49016387 MS.gene23985:CDS 45.0%
GTATATAGGCTGAGAAGTGG+TGG - chr1.3:49015897-49015916 MS.gene23985:intron 45.0%
GTGGTGAAAGATCCAACTCA+GGG + chr1.3:49016043-49016062 None:intergenic 45.0%
TAATTCCGGGTTAAACGGGT+TGG - chr1.3:49016010-49016029 MS.gene23985:intron 45.0%
TACACACCGTTGTTCACGTT+TGG + chr1.3:49016110-49016129 None:intergenic 45.0%
TCCCTGGATTGAGAGGAAAA+AGG + chr1.3:49016785-49016804 None:intergenic 45.0%
TGCAATTTGCATTGCAGGTG+TGG - chr1.3:49016367-49016386 MS.gene23985:CDS 45.0%
TGTTGTCAAGGGACATAGTC+AGG + chr1.3:49015470-49015489 None:intergenic 45.0%
TTCAAACGGGTCGGTAATAC+GGG - chr1.3:49015819-49015838 MS.gene23985:CDS 45.0%
! ACCCTTTTTCCTCTCAATCC+AGG - chr1.3:49016780-49016799 MS.gene23985:CDS 45.0%
! CAACTTTGGGAATCTGTCCA+AGG + chr1.3:49016716-49016735 None:intergenic 45.0%
! CCCTTTTTCCTCTCAATCCA+GGG - chr1.3:49016781-49016800 MS.gene23985:CDS 45.0%
AATGACGACAAGGTGGTGTG+AGG + chr1.3:49015388-49015407 None:intergenic 50.0%
ACAAGGTGGTGTGAGGAAGA+GGG + chr1.3:49015381-49015400 None:intergenic 50.0%
AGAACGGATGAGGGAACTTC+CGG + chr1.3:49015445-49015464 None:intergenic 50.0%
CCGAGTTTGGATAAGGCGAA+TGG - chr1.3:49015855-49015874 MS.gene23985:CDS 50.0%
CTAATGCTCCCTGGATTGAG+AGG + chr1.3:49016792-49016811 None:intergenic 50.0%
GATCCACTGTGCCAATGTTG+TGG - chr1.3:49015931-49015950 MS.gene23985:intron 50.0%
GGTGGTGAAAGATCCAACTC+AGG + chr1.3:49016044-49016063 None:intergenic 50.0%
GTTCCACAACATTGGCACAG+TGG + chr1.3:49015937-49015956 None:intergenic 50.0%
TCGTGGGAATTCAAACGGGT+CGG - chr1.3:49015810-49015829 MS.gene23985:CDS 50.0%
TCTTTGCAGACCTCATGGCA+GGG - chr1.3:49016845-49016864 MS.gene23985:CDS 50.0%
TGGGTCGTGGGAATTCAAAC+GGG - chr1.3:49015806-49015825 MS.gene23985:CDS 50.0%
TTCTTTGCAGACCTCATGGC+AGG - chr1.3:49016844-49016863 MS.gene23985:CDS 50.0%
TTGTCGGAGGAATGACGACA+AGG + chr1.3:49015398-49015417 None:intergenic 50.0%
TTTGGGAATCTGTCCAAGGC+AGG + chr1.3:49016712-49016731 None:intergenic 50.0%
!! CTGAGAAGTGGTGGGTATGA+TGG - chr1.3:49015906-49015925 MS.gene23985:intron 50.0%
!!! TCGGAATTTTGAAGCGGGTC+TGG + chr1.3:49015649-49015668 None:intergenic 50.0%
ACGGTTGTGACGAGAAGACC+CGG + chr1.3:49015552-49015571 None:intergenic 55.0%
ACGTAGAGGTGGAGACCACT+CGG + chr1.3:49015687-49015706 None:intergenic 55.0%
AGACATCATGAGCTGCCACG+TGG + chr1.3:49015592-49015611 None:intergenic 55.0%
AGTCAGGCGAGAACGGATGA+GGG + chr1.3:49015454-49015473 None:intergenic 55.0%
AGTGGTCTCCACCTCTACGT+TGG - chr1.3:49015687-49015706 MS.gene23985:CDS 55.0%
CGACAACCACTTTCCGCAAC+CGG - chr1.3:49015412-49015431 MS.gene23985:CDS 55.0%
CGACGCAACTGACACTGGAA+CGG + chr1.3:49015775-49015794 None:intergenic 55.0%
CGGTTGCGGAAAGTGGTTGT+CGG + chr1.3:49015414-49015433 None:intergenic 55.0%
CTCATAGTCCGCGCACTCAA+AGG - chr1.3:49015738-49015757 MS.gene23985:CDS 55.0%
CTTCCAAGCCTTTGAGTGCG+CGG + chr1.3:49015749-49015768 None:intergenic 55.0%
GACAAGGTGGTGTGAGGAAG+AGG + chr1.3:49015382-49015401 None:intergenic 55.0%
GATAGGGATTCCCTGCCATG+AGG + chr1.3:49016858-49016877 None:intergenic 55.0%
GGAATATCCGCCAGTGGGAT+CGG + chr1.3:49015628-49015647 None:intergenic 55.0%
GGGACATAGTCAGGCGAGAA+CGG + chr1.3:49015461-49015480 None:intergenic 55.0%
TAGTCAGGCGAGAACGGATG+AGG + chr1.3:49015455-49015474 None:intergenic 55.0%
TCGGAGGAATGACGACAAGG+TGG + chr1.3:49015395-49015414 None:intergenic 55.0%
TTGCGGAAAGTGGTTGTCGG+AGG + chr1.3:49015411-49015430 None:intergenic 55.0%
TTGTGACGAGAAGACCCGGT+GGG + chr1.3:49015548-49015567 None:intergenic 55.0%
! ATGAGAGTACGGTGAGCCCA+CGG + chr1.3:49015723-49015742 None:intergenic 55.0%
! GGTCTGGAATATCCGCCAGT+GGG + chr1.3:49015633-49015652 None:intergenic 55.0%
! GTGCGCGGACTATGAGAGTA+CGG + chr1.3:49015734-49015753 None:intergenic 55.0%
!! TCGGTGGTGGACCAGAGAAT+CGG + chr1.3:49015668-49015687 None:intergenic 55.0%
ACGGGCCAACCCGTTTAACC+CGG + chr1.3:49016018-49016037 None:intergenic 60.0%
AGTCCGCGCACTCAAAGGCT+TGG - chr1.3:49015743-49015762 MS.gene23985:CDS 60.0%
ATATCCGCCAGTGGGATCGG+AGG + chr1.3:49015625-49015644 None:intergenic 60.0%
ATGGCAGGCCAACGTAGAGG+TGG + chr1.3:49015698-49015717 None:intergenic 60.0%
GAGTCTCCGGTTGCGGAAAG+TGG + chr1.3:49015421-49015440 None:intergenic 60.0%
GGGAACTTCCGGTGAGTCTC+CGG + chr1.3:49015434-49015453 None:intergenic 60.0%
GTTGGCCCGTAACCCTGAGT+TGG - chr1.3:49016028-49016047 MS.gene23985:intron 60.0%
GTTGTGACGAGAAGACCCGG+TGG + chr1.3:49015549-49015568 None:intergenic 60.0%
TAGAGGTGGAGACCACTCGG+TGG + chr1.3:49015684-49015703 None:intergenic 60.0%
TATCCGCCAGTGGGATCGGA+GGG + chr1.3:49015624-49015643 None:intergenic 60.0%
TCCAGTGTCAGTTGCGTCGC+CGG - chr1.3:49015776-49015795 MS.gene23985:CDS 60.0%
TCCCACGACCCATCCATTCC+CGG + chr1.3:49015798-49015817 None:intergenic 60.0%
TTCCGCAACCGGAGACTCAC+CGG - chr1.3:49015423-49015442 MS.gene23985:CDS 60.0%
TTCCGGTGAGTCTCCGGTTG+CGG + chr1.3:49015428-49015447 None:intergenic 60.0%
TTCTCTGGTCCACCACCGAG+TGG - chr1.3:49015669-49015688 MS.gene23985:CDS 60.0%
TTGCGTCGCCGGGAATGGAT+GGG - chr1.3:49015787-49015806 MS.gene23985:CDS 60.0%
! GGGTCTGGAATATCCGCCAG+TGG + chr1.3:49015634-49015653 None:intergenic 60.0%
! TGAGAGTACGGTGAGCCCAC+GGG + chr1.3:49015722-49015741 None:intergenic 60.0%
ACGTGGAGTTCCAGGCGGTG+CGG + chr1.3:49015575-49015594 None:intergenic 65.0%
CCAGTGTCAGTTGCGTCGCC+GGG - chr1.3:49015777-49015796 MS.gene23985:CDS 65.0%
CTGCCACGTGGAGTTCCAGG+CGG + chr1.3:49015580-49015599 None:intergenic 65.0%
GACGAGAAGACCCGGTGGGA+GGG + chr1.3:49015544-49015563 None:intergenic 65.0%
GAGCTGCCACGTGGAGTTCC+AGG + chr1.3:49015583-49015602 None:intergenic 65.0%
GCCGGGAATGGATGGGTCGT+GGG - chr1.3:49015794-49015813 MS.gene23985:CDS 65.0%
GGCATGGCAGGCCAACGTAG+AGG + chr1.3:49015701-49015720 None:intergenic 65.0%
GTCAGTTGCGTCGCCGGGAA+TGG - chr1.3:49015782-49015801 MS.gene23985:CDS 65.0%
GTTGCGTCGCCGGGAATGGA+TGG - chr1.3:49015786-49015805 MS.gene23985:CDS 65.0%
TGACGAGAAGACCCGGTGGG+AGG + chr1.3:49015545-49015564 None:intergenic 65.0%
! AGGTGGAGACCACTCGGTGG+TGG + chr1.3:49015681-49015700 None:intergenic 65.0%
CCCGGCGACGCAACTGACAC+TGG + chr1.3:49015780-49015799 None:intergenic 70.0%
CGCCGGGAATGGATGGGTCG+TGG - chr1.3:49015793-49015812 MS.gene23985:CDS 70.0%
CTCGCTCCCTCCGATCCCAC+TGG - chr1.3:49015615-49015634 MS.gene23985:intron 70.0%
GCACCGCCTGGAACTCCACG+TGG - chr1.3:49015574-49015593 MS.gene23985:intron 70.0%
GCTCCCTCCGATCCCACTGG+CGG - chr1.3:49015618-49015637 MS.gene23985:intron 70.0%
GGAGTTCCAGGCGGTGCGGA+CGG + chr1.3:49015571-49015590 None:intergenic 70.0%
GTACGGTGAGCCCACGGGCA+TGG + chr1.3:49015717-49015736 None:intergenic 70.0%
TCACAACCGTCCGCACCGCC+TGG - chr1.3:49015562-49015581 MS.gene23985:intron 70.0%
! ACGTTGGCCTGCCATGCCCG+TGG - chr1.3:49015703-49015722 MS.gene23985:CDS 70.0%
! CGTTGGCCTGCCATGCCCGT+GGG - chr1.3:49015704-49015723 MS.gene23985:CDS 70.0%
CTGGGGTCGGTCCCTCCCAC+CGG - chr1.3:49015530-49015549 MS.gene23985:intron 75.0%
GGTGAGCCCACGGGCATGGC+AGG + chr1.3:49015713-49015732 None:intergenic 75.0%
TGGGGTCGGTCCCTCCCACC+GGG - chr1.3:49015531-49015550 MS.gene23985:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 49015357 49016908 49015357 ID=MS.gene23985
chr1.3 mRNA 49015357 49016908 49015357 ID=MS.gene23985.t1;Parent=MS.gene23985
chr1.3 exon 49016133 49016908 49016133 ID=MS.gene23985.t1.exon1;Parent=MS.gene23985.t1
chr1.3 CDS 49016133 49016908 49016133 ID=cds.MS.gene23985.t1;Parent=MS.gene23985.t1
chr1.3 exon 49015632 49015881 49015632 ID=MS.gene23985.t1.exon2;Parent=MS.gene23985.t1
chr1.3 CDS 49015632 49015881 49015632 ID=cds.MS.gene23985.t1;Parent=MS.gene23985.t1
chr1.3 exon 49015357 49015542 49015357 ID=MS.gene23985.t1.exon3;Parent=MS.gene23985.t1
chr1.3 CDS 49015357 49015542 49015357 ID=cds.MS.gene23985.t1;Parent=MS.gene23985.t1
Gene Sequence

>MS.gene23985

ATGTCGATGTTGTGCGCTTCTCCCTCTTCCTCACACCACCTTGTCGTCATTCCTCCGACAACCACTTTCCGCAACCGGAGACTCACCGGAAGTTCCCTCATCCGTTCTCGCCTGACTATGTCCCTTGACAACAACAATTCCTCTTCCCTACTAAGTTCTGTTACAAAACTTCTCTGGGGTCGGTCCCTCCCACCGGGTCTTCTCGTCACAACCGTCCGCACCGCCTGGAACTCCACGTGGCAGCTCATGATGTCTCAGCTCGCTCCCTCCGATCCCACTGGCGGATATTCCAGACCCGCTTCAAAATTCCGATTCTCTGGTCCACCACCGAGTGGTCTCCACCTCTACGTTGGCCTGCCATGCCCGTGGGCTCACCGTACTCTCATAGTCCGCGCACTCAAAGGCTTGGAAGATGCCGTTCCAGTGTCAGTTGCGTCGCCGGGAATGGATGGGTCGTGGGAATTCAAACGGGTCGGTAATACGGGTCATGTAATTAGTCCGAGTTTGGATAAGGCGAATGGTTGCAAGACTTTAAAAGAAGTATATAGGCTGAGAAGTGGTGGGTATGATGGAAGATCCACTGTGCCAATGTTGTGGAACAAAGACTCCAAAGATGTTGTATGTAATGAAAGCTATGACATAATTCAATTGTTTAATTCCGGGTTAAACGGGTTGGCCCGTAACCCTGAGTTGGATCTTTCACCACCTGAATTAAAGGATAAGATTGAGGAATGGTATCAAGTGATATATCCAAACGTGAACAACGGTGTGTATAGGTAAGAAATGCAGTGCAACTTCTGTAATCACAATGAGTTTGAGAAAATCACGGTGACACTTTTGGTTTTGTTCAACGCATATCATTGTAGCGCAAGTCATGGTGATTTTGTTTAACTCAGCGTGATTTCAAACATGCTCGAATATTTTCAGCAGCAGTTAGACCTCACTTTGAATACTTCTTCAGAGTACACATTCATCATTAATTTTGCTTCGTTCATCGTTGATTATTGAATTGCAATTTGCATTGCAGGTGTGGGTTTGCGCAGAGCCAAGAAGCATATGATAGAGCAGTGAATGAGTTGTTTTGTACACTAGATGAGTTGGAGGATCATTTGTCAAATTCTCGCTATTTGTGTGGAGACACGCTCACACTTGTTGATATATGTCTGTTTACTACTTTGATTCGGTTTGATATTGCTTATAATGTTCTGTTTAAATGCACCAAGAAGAAGTTATATGAGTATACCAATCTACATGCCTACATGCGTCACATTTATCAGGTGCTTGCTTTGCTCAAAAAATGTTTAGGTTTATCTATCATTTGTGTTGTTTGTCTACTAACATATTATGTGTTTCCTGCCTTGGACAGATTCCCAAAGTTGCAGATACTTGTAATTTTCAAGAAATTATGGATGGTTACTACAAAACCCTTTTTCCTCTCAATCCAGGGAGCATTAGACCAATTATGCCTTCAACTTCAGAGCATGAAATTCTTTGCAGACCTCATGGCAGGGAATCCCTATCATCATCAACTGAACCAGTATTTGTTAAATAG
Protein sequence

>MS.gene23985.t1

MSMLCASPSSSHHLVVIPPTTTFRNRRLTGSSLIRSRLTMSLDNNNSSSLLSSVTKLLWGRSLPPGLLVTTVRTAWNSTWQLMMSQLAPSDPTGGYSRPASKFRFSGPPPSGLHLYVGLPCPWAHRTLIVRALKGLEDAVPVSVASPGMDGSWEFKRVGNTGHVISPSLDKANGCKTLKEVYRLRSGGYDGRSTVPMLWNKDSKDVVCNESYDIIQLFNSGLNGLARNPELDLSPPELKDKIEEWYQVIYPNVNNGVYRCGFAQSQEAYDRAVNELFCTLDELEDHLSNSRYLCGDTLTLVDICLFTTLIRFDIAYNVLFKCTKKKLYEYTNLHAYMRHIYQIPKVADTCNFQEIMDGYYKTLFPLNPGSIRPIMPSTSEHEILCRPHGRESLSSSTEPVFVK