AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24091

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24091.t1 MTR_1g026410 98.895 543 5 1 1 542 1 543 0.0 1093
MS.gene24091.t1 MTR_3g115050 84.461 547 77 2 1 542 1 544 0.0 966
MS.gene24091.t1 MTR_4g075690 76.667 540 119 2 3 542 11 543 0.0 863
MS.gene24091.t1 MTR_4g049390 74.225 516 133 0 23 538 22 537 0.0 814
MS.gene24091.t1 MTR_4g048350 72.674 516 140 1 23 538 22 536 0.0 793
MS.gene24091.t1 MTR_2g088080 71.455 536 153 0 2 537 4 539 0.0 789
MS.gene24091.t1 MTR_4g132320 70.336 536 158 1 7 542 11 545 0.0 763
MS.gene24091.t1 MTR_4g075690 74.775 444 105 2 3 446 11 447 0.0 685
MS.gene24091.t1 MTR_2g088080 71.397 458 131 0 80 537 1 458 0.0 675
MS.gene24091.t1 MTR_8g479390 60.348 517 202 2 23 538 26 540 0.0 650
MS.gene24091.t1 MTR_5g018270 59.266 518 207 2 21 538 24 537 0.0 625
MS.gene24091.t1 MTR_8g479380 56.415 530 222 5 6 534 13 534 0.0 619
MS.gene24091.t1 MTR_4g083190 56.343 536 222 5 5 532 7 538 0.0 597
MS.gene24091.t1 MTR_3g083440 54.444 540 228 5 1 532 7 536 0.0 577
MS.gene24091.t1 MTR_3g083390 54.444 540 228 5 1 532 7 536 0.0 576
MS.gene24091.t1 MTR_3g083430 54.259 540 229 5 1 532 7 536 0.0 574
MS.gene24091.t1 MTR_3g083400 54.259 540 229 5 1 532 7 536 0.0 573
MS.gene24091.t1 MTR_3g083450 55.470 521 223 4 20 532 18 537 0.0 572
MS.gene24091.t1 MTR_4g083210 53.510 527 240 4 10 532 7 532 0.0 570
MS.gene24091.t1 MTR_3g083410 54.878 492 213 4 49 532 10 500 0.0 531
MS.gene24091.t1 MTR_4g101650 51.554 547 244 6 7 533 6 551 0.0 530
MS.gene24091.t1 MTR_3g008580 48.825 553 261 7 1 532 1 552 1.54e-176 511
MS.gene24091.t1 MTR_7g051440 52.174 529 227 10 25 532 26 549 2.82e-175 508
MS.gene24091.t1 MTR_1g090707 45.404 544 278 8 3 533 1 538 1.14e-156 460
MS.gene24091.t1 MTR_4g133150 58.173 208 68 2 132 337 21 211 6.42e-72 229
MS.gene24091.t1 MTR_5g020620 29.806 567 344 18 3 531 11 561 3.41e-59 206
MS.gene24091.t1 MTR_5g020600 28.345 568 352 16 6 531 12 566 2.55e-57 201
MS.gene24091.t1 MTR_3g462760 30.237 506 308 15 28 497 26 522 1.68e-54 193
MS.gene24091.t1 MTR_5g081810 27.561 537 340 12 33 531 4 529 8.03e-54 191
MS.gene24091.t1 MTR_5g069680 27.119 531 343 14 1 497 4 524 2.97e-51 184
MS.gene24091.t1 MTR_4g015120 27.639 521 345 12 22 511 18 537 2.71e-48 176
MS.gene24091.t1 MTR_8g091390 26.910 576 327 18 23 536 29 572 4.31e-47 173
MS.gene24091.t1 MTR_3g078740 25.894 587 335 20 28 537 26 589 7.63e-47 173
MS.gene24091.t1 MTR_7g458880 26.117 582 364 17 1 531 14 580 8.34e-45 167
MS.gene24091.t1 MTR_3g078700 26.678 581 322 23 5 532 7 536 1.20e-44 166
MS.gene24091.t1 MTR_5g073210 26.132 574 358 16 7 531 4 560 5.83e-41 155
MS.gene24091.t1 MTR_7g058690 26.871 521 323 18 28 497 33 546 9.21e-41 155
MS.gene24091.t1 MTR_8g027375 25.414 543 361 14 3 504 5 544 9.40e-41 155
MS.gene24091.t1 MTR_3g101640 27.675 542 327 17 6 497 11 537 2.76e-40 154
MS.gene24091.t1 MTR_3g071890 26.946 501 318 14 49 508 54 547 7.92e-40 152
MS.gene24091.t1 MTR_2g008330 26.376 527 338 14 49 531 59 579 1.81e-39 152
MS.gene24091.t1 MTR_7g065980 29.225 503 303 20 42 496 39 536 1.84e-39 152
MS.gene24091.t1 MTR_7g062310 25.720 521 328 15 28 497 47 559 7.07e-39 150
MS.gene24091.t1 MTR_7g060460 26.095 548 338 18 8 497 9 547 1.67e-38 149
MS.gene24091.t1 MTR_7g062250 25.439 570 372 17 11 531 13 578 1.75e-38 149
MS.gene24091.t1 MTR_5g083360 25.852 499 316 14 46 497 42 533 1.93e-38 149
MS.gene24091.t1 MTR_3g101635 28.189 486 311 14 49 497 48 532 3.00e-37 145
MS.gene24091.t1 MTR_4g064530 25.000 540 359 17 2 497 14 551 2.39e-36 143
MS.gene24091.t1 MTR_7g065970 26.508 547 329 18 1 491 1 530 3.37e-36 142
MS.gene24091.t1 MTR_3g078730 25.342 584 334 21 5 537 7 539 4.52e-36 142
MS.gene24091.t1 MTR_4g064530 25.000 536 354 18 2 491 14 547 3.84e-34 136
MS.gene24091.t1 MTR_4g019225 24.954 549 357 15 32 531 30 572 3.68e-29 122
MS.gene24091.t1 MTR_4g133160 52.294 109 38 2 413 521 1 95 5.99e-27 104
MS.gene24091.t1 MTR_5g018290 63.636 66 24 0 473 538 5 70 2.53e-24 96.7
MS.gene24091.t1 MTR_5g081790 26.538 260 158 7 256 489 168 420 5.52e-14 74.7
MS.gene24091.t1 MTR_5g081790 24.242 165 116 3 10 166 6 169 3.54e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24091.t1 AT1G76160 84.310 529 78 2 14 542 18 541 0.0 928
MS.gene24091.t1 AT1G41830 81.041 538 96 2 5 542 11 542 0.0 911
MS.gene24091.t1 AT1G21850 78.137 526 113 2 14 539 15 538 0.0 861
MS.gene24091.t1 AT1G21860 73.913 529 135 3 10 538 12 537 0.0 828
MS.gene24091.t1 AT4G22010 71.241 532 152 1 12 542 10 541 0.0 795
MS.gene24091.t1 AT4G38420 67.890 545 169 3 3 541 5 549 0.0 760
MS.gene24091.t1 AT4G28090 62.454 538 186 7 12 538 9 541 0.0 689
MS.gene24091.t1 AT5G66920 59.266 518 209 1 21 538 30 545 0.0 651
MS.gene24091.t1 AT4G38420 66.247 477 155 3 3 473 5 481 0.0 639
MS.gene24091.t1 AT1G55570 56.410 546 225 5 1 537 5 546 0.0 607
MS.gene24091.t1 AT4G38420 66.444 450 145 3 3 446 5 454 0.0 601
MS.gene24091.t1 AT3G13390 58.046 522 209 4 24 536 24 544 0.0 591
MS.gene24091.t1 AT3G13400 54.833 538 234 4 7 536 6 542 0.0 585
MS.gene24091.t1 AT3G13400 54.833 538 234 4 7 536 6 542 0.0 585
MS.gene24091.t1 AT1G55560 54.089 538 238 4 7 536 5 541 0.0 582
MS.gene24091.t1 AT4G37160 54.802 531 233 4 14 542 16 541 0.0 581
MS.gene24091.t1 AT2G23630 55.682 528 231 2 13 540 15 539 0.0 579
MS.gene24091.t1 AT2G23630 55.682 528 231 2 13 540 20 544 0.0 579
MS.gene24091.t1 AT5G48450 51.763 539 246 9 7 533 8 544 0.0 548
MS.gene24091.t1 AT5G48450 51.571 541 248 9 7 535 8 546 0.0 548
MS.gene24091.t1 AT4G12420 50.906 552 247 8 1 532 1 548 0.0 535
MS.gene24091.t1 AT4G12420 50.906 552 247 8 1 532 1 548 0.0 535
MS.gene24091.t1 AT5G51480 50.000 530 244 8 23 532 23 551 0.0 526
MS.gene24091.t1 AT1G75790 50.462 541 252 5 10 534 4 544 0.0 521
MS.gene24091.t1 AT4G25240 50.000 552 255 8 1 532 1 551 1.68e-178 516
MS.gene24091.t1 AT4G25240 50.000 552 255 8 1 532 1 551 1.68e-178 516
MS.gene24091.t1 AT4G37160 55.172 435 192 3 14 446 16 449 2.22e-167 482
MS.gene24091.t1 AT4G39830 27.698 556 336 14 2 504 13 555 5.76e-56 197
MS.gene24091.t1 AT5G21105 27.148 582 336 19 12 532 22 576 1.05e-53 191
MS.gene24091.t1 AT5G58910 28.785 535 328 16 7 497 8 533 3.45e-53 190
MS.gene24091.t1 AT2G38080 27.357 541 357 13 23 531 22 558 1.50e-52 188
MS.gene24091.t1 AT5G58910 28.785 535 327 17 7 497 8 532 1.55e-51 185
MS.gene24091.t1 AT5G21105 27.829 539 306 18 12 489 22 538 1.85e-51 184
MS.gene24091.t1 AT5G21100 27.143 560 323 19 32 532 28 561 3.83e-50 181
MS.gene24091.t1 AT5G03260 27.641 568 354 17 5 531 6 557 4.74e-50 181
MS.gene24091.t1 AT5G01190 27.087 539 353 12 28 531 25 558 1.37e-48 177
MS.gene24091.t1 AT5G01190 27.237 514 342 11 49 531 32 544 4.78e-47 172
MS.gene24091.t1 AT5G58910 29.472 492 288 16 49 497 14 489 6.01e-46 169
MS.gene24091.t1 AT4G39830 27.549 461 272 12 96 504 8 458 4.51e-40 152
MS.gene24091.t1 AT4G39830 27.549 461 272 12 96 504 10 460 6.20e-40 152
MS.gene24091.t1 AT2G29130 26.335 543 343 17 2 496 5 538 8.90e-40 152
MS.gene24091.t1 AT2G30210 27.108 498 308 16 46 496 46 535 1.03e-39 152
MS.gene24091.t1 AT2G46570 23.757 543 357 14 28 525 32 562 4.53e-39 150
MS.gene24091.t1 AT5G05390 27.054 499 313 14 42 497 41 531 6.78e-39 150
MS.gene24091.t1 AT3G09220 26.365 531 340 14 1 491 8 527 3.47e-38 148
MS.gene24091.t1 AT5G48100 26.800 500 318 16 49 505 43 537 1.15e-37 146
MS.gene24091.t1 AT1G18140 24.952 525 333 17 28 497 29 547 2.41e-36 143
MS.gene24091.t1 AT5G09360 26.136 528 344 16 7 496 15 534 2.55e-36 142
MS.gene24091.t1 AT5G01040 27.435 503 300 17 39 491 39 526 3.37e-36 142
MS.gene24091.t1 AT5G01050 26.335 543 341 17 39 533 39 570 3.92e-36 142
MS.gene24091.t1 AT4G39830 26.681 461 263 12 96 504 10 447 2.23e-35 139
MS.gene24091.t1 AT2G40370 23.850 587 384 15 1 531 1 580 6.21e-35 139
MS.gene24091.t1 AT5G21105 27.720 386 231 12 173 532 22 385 2.48e-34 134
MS.gene24091.t1 AT5G07130 24.955 553 333 18 14 504 10 542 5.59e-34 136
MS.gene24091.t1 AT2G46570 24.017 483 316 15 85 525 4 477 5.72e-30 123
MS.gene24091.t1 AT3G09220 25.814 430 278 11 101 491 3 430 1.94e-26 112
MS.gene24091.t1 AT5G60020 25.846 325 206 7 1 306 1 309 1.80e-25 110
MS.gene24091.t1 AT5G60020 25.846 325 206 7 1 306 1 309 1.87e-25 110
MS.gene24091.t1 AT5G60020 26.568 271 179 5 49 306 14 277 2.85e-24 107
MS.gene24091.t1 AT5G07130 24.790 476 276 18 91 504 2 457 3.52e-23 103
MS.gene24091.t1 AT5G07130 24.790 476 276 18 91 504 2 457 3.52e-23 103

Find 166 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGATGTCTTCATCATTT+TGG 0.141546 1.2:-120842 None:intergenic
GGAACTTGAGGTCAGAATTT+TGG 0.153063 1.2:+121118 MS.gene24091:CDS
CACAAAGCTGCTGGTGGTTT+TGG 0.164848 1.2:+119776 MS.gene24091:CDS
TGCTGTCAGGTTTGTCCTAA+TGG 0.243582 1.2:-120532 None:intergenic
AACTCTGCAGGTCCAGTTTC+AGG 0.260810 1.2:+120453 MS.gene24091:CDS
ATGTTACAGGAAAGACTTAC+AGG 0.284854 1.2:+120184 MS.gene24091:intron
GGCTACTCTTTCTTTGTTGT+TGG 0.288891 1.2:+120882 MS.gene24091:CDS
TTCTATTATTTCCCATCTCT+TGG 0.289041 1.2:+119749 MS.gene24091:CDS
AGTTCAGCTGGACAAGTTAA+TGG 0.296097 1.2:+120630 MS.gene24091:CDS
CCACAAAGTAATGCATTCTT+AGG 0.312465 1.2:-121219 None:intergenic
GACAATGGACAAGTGATAAA+AGG 0.313235 1.2:+120995 MS.gene24091:CDS
CGTATGAGTTCCTTCTTTGC+TGG 0.315087 1.2:-119640 None:intergenic
GGTGATTACACTGTCCTTAT+TGG 0.319377 1.2:+119854 MS.gene24091:CDS
GGTTCAAGGACCAATCAATT+TGG 0.323811 1.2:-120500 None:intergenic
AGTAATGCATTCTTAGGAAT+AGG 0.325123 1.2:-121213 None:intergenic
GGTCTATCAGAGATGCTTCC+AGG 0.328166 1.2:-120747 None:intergenic
TTACTTTGTGGTAGGGCAAC+TGG 0.340111 1.2:+121231 MS.gene24091:CDS
TCGAAGGGAACTGGAATTCT+TGG 0.348615 1.2:-119821 None:intergenic
CCGCAAGGATCATACCATTA+TGG 0.358471 1.2:+120573 MS.gene24091:CDS
GATCCTTGCGGGTTTGGTCT+TGG 0.363379 1.2:-120561 None:intergenic
GCTACTCTTTCTTTGTTGTT+GGG 0.364251 1.2:+120883 MS.gene24091:CDS
CCTAAGAATGCATTACTTTG+TGG 0.376644 1.2:+121219 MS.gene24091:CDS
CTTATCAATGGTCGTGGGTC+TGG 0.377274 1.2:+120029 MS.gene24091:CDS
AAGAAGTCAGCCAGCTTAAG+AGG 0.378912 1.2:-120702 None:intergenic
TCCACTTGGTGTTCGCCAAC+AGG 0.379493 1.2:+118648 MS.gene24091:CDS
GTCTTGGTCCACTTGCTGTC+AGG 0.380810 1.2:-120545 None:intergenic
CATAATGGTATGATCCTTGC+GGG 0.382551 1.2:-120572 None:intergenic
CTTCAGAGCTATCATCTTGA+TGG 0.384388 1.2:+120861 MS.gene24091:CDS
TGAACCAAGCCCGCTCCATT+AGG 0.386633 1.2:+120517 MS.gene24091:CDS
CTTCAAGTGAAAGATCAAAT+TGG 0.388160 1.2:+119722 MS.gene24091:CDS
TGGTATGATCCTTGCGGGTT+TGG 0.392790 1.2:-120567 None:intergenic
CAAAACCACCAGCAGCTTTG+TGG 0.393298 1.2:-119775 None:intergenic
ACACTGTCCTTATTGGTGAT+TGG 0.395975 1.2:+119861 MS.gene24091:CDS
TCATACGAAGATGGAGTGTT+TGG 0.398452 1.2:+119656 MS.gene24091:CDS
GTTGCTGTAGCGAAGAATTC+CGG 0.398646 1.2:-120433 None:intergenic
CTTGTTTCCGTTATCAAGTT+GGG 0.404501 1.2:-119985 None:intergenic
ACTTGTACCAATCACCAATA+AGG 0.411862 1.2:-119868 None:intergenic
ATGTATGTAAAGTTCTTTCC+AGG 0.413929 1.2:-119698 None:intergenic
ATCCATACAGGTTCTTCAAC+TGG 0.414214 1.2:+118602 MS.gene24091:CDS
GTAATGCATTCTTAGGAATA+GGG 0.417767 1.2:-121212 None:intergenic
ATTTGGATGGTGGGTCCACC+AGG 0.418556 1.2:-120483 None:intergenic
TTGTCCTAATGGAGCGGGCT+TGG 0.419822 1.2:-120521 None:intergenic
TTAAGTTTATCATGCCATAA+TGG 0.419861 1.2:-120587 None:intergenic
GAATGTCTGGTCCTGGGAAT+TGG 0.420914 1.2:-118811 None:intergenic
AATGGAGCGGGCTTGGTTCA+AGG 0.421159 1.2:-120514 None:intergenic
CCTGATGGAATTCTTATCAA+TGG 0.421680 1.2:+120017 MS.gene24091:CDS
GCGGGATCATCGAAGGGAAC+TGG 0.422110 1.2:-119830 None:intergenic
CTGGAATTCTTGGCCTACTT+AGG 0.428217 1.2:-119811 None:intergenic
TAGAATATCAAATGTGGGAT+TGG 0.430691 1.2:+120209 MS.gene24091:CDS
GCCAGCTTAAGAGGAGTATC+GGG 0.437831 1.2:-120693 None:intergenic
AAGTTCTTTCCAGGTGGAAT+GGG 0.445944 1.2:-119689 None:intergenic
GTTCAGCTGGACAAGTTAAT+GGG 0.447873 1.2:+120631 MS.gene24091:CDS
CAAGGGAGGAGTAGGTGGTT+TGG 0.449186 1.2:-120302 None:intergenic
AGCCAGCTTAAGAGGAGTAT+CGG 0.452171 1.2:-120694 None:intergenic
TAGATAGCAGTCCATGACTT+TGG 0.469788 1.2:-121069 None:intergenic
TATTATGTGACAGGATTTGA+AGG 0.472072 1.2:+119962 MS.gene24091:intron
TGGATGGTGGGTCCACCAGG+GGG 0.473394 1.2:-120480 None:intergenic
GACCCACCATCCAAATTGAT+TGG 0.477439 1.2:+120490 MS.gene24091:CDS
CAGTGAAATGGCACTGAACT+TGG 0.480159 1.2:+118522 None:intergenic
CTTGGATTCCACAAAGCTGC+TGG 0.481877 1.2:+119767 MS.gene24091:CDS
TTTGTCACAGAATGAATGTC+TGG 0.484656 1.2:-118824 None:intergenic
CAGGTTTGTCCTAATGGAGC+GGG 0.488484 1.2:-120526 None:intergenic
AAAGTTCTTTCCAGGTGGAA+TGG 0.489538 1.2:-119690 None:intergenic
GTGGTAGCTAAGTCATCAAA+GGG 0.489623 1.2:-121268 None:intergenic
TTGAAGGCCCAACTTGATAA+CGG 0.491854 1.2:+119978 MS.gene24091:CDS
CCCCGATACTCCTCTTAAGC+TGG 0.492307 1.2:+120692 MS.gene24091:CDS
CCATTGATAAGAATTCCATC+AGG 0.493362 1.2:-120017 None:intergenic
ACTTGTTTCCGTTATCAAGT+TGG 0.493576 1.2:-119986 None:intergenic
ATTCCGGTGGAGGTGAGTAC+AGG 0.496771 1.2:-120417 None:intergenic
CTCCTCCCTTGACGTTCACG+TGG 0.496861 1.2:+120314 MS.gene24091:CDS
ACAGAATGAATGTCTGGTCC+TGG 0.504301 1.2:-118818 None:intergenic
ATAGCAGGTGTTTACCGTCC+TGG 0.506103 1.2:+120729 MS.gene24091:CDS
ACTAACCATGAAATGAGAAA+AGG 0.507335 1.2:-118887 None:intergenic
GGAATGGAGTCCAGCAAAGA+AGG 0.507749 1.2:+119630 MS.gene24091:intron
TTCCAGTTGAAGAACCTGTA+TGG 0.507790 1.2:-118604 None:intergenic
GGGAGGAGTAGGTGGTTTGG+AGG 0.508210 1.2:-120299 None:intergenic
TATCAATGTCTTCAACAGCT+TGG 0.512023 1.2:+118859 MS.gene24091:CDS
GGAATTCTTATCAATGGTCG+TGG 0.513900 1.2:+120023 MS.gene24091:CDS
AGAATGCATTACTTTGTGGT+AGG 0.515449 1.2:+121223 MS.gene24091:CDS
CTGCGTCTCTAAGATTGTAC+TGG 0.516471 1.2:-121020 None:intergenic
TTGGATGGTGGGTCCACCAG+GGG 0.516542 1.2:-120481 None:intergenic
CAAGATGAAGCTGGTAGAAG+TGG 0.521035 1.2:+120263 MS.gene24091:CDS
AACAAGTTACCTTTCCCTGA+TGG 0.521178 1.2:+120002 MS.gene24091:CDS
GAGGAATTAGAATCCTAAGT+AGG 0.523452 1.2:+119798 MS.gene24091:CDS
GCTGACTTCTTCAAGATAGC+AGG 0.524240 1.2:+120714 MS.gene24091:CDS
TTCAACTGGAACGTTACCTA+TGG 0.528833 1.2:+118616 MS.gene24091:CDS
TTTGGATGGTGGGTCCACCA+GGG 0.529837 1.2:-120482 None:intergenic
TTGTTGCTGAAGATCCATAC+AGG 0.530698 1.2:+118590 MS.gene24091:CDS
GAATGCATTACTTTGTGGTA+GGG 0.534147 1.2:+121224 MS.gene24091:CDS
GGATTCCACAAAGCTGCTGG+TGG 0.534304 1.2:+119770 MS.gene24091:CDS
GGAGGAGTAGGTGGTTTGGA+GGG 0.534506 1.2:-120298 None:intergenic
ATCAATGGTCGTGGGTCTGG+AGG 0.535103 1.2:+120032 MS.gene24091:CDS
CTTATCAATGGCCAATTCCC+AGG 0.536067 1.2:+118800 MS.gene24091:CDS
CTTCGCTACAGCAACTCTGC+AGG 0.536476 1.2:+120441 MS.gene24091:CDS
ATGATTAGTTACCGTGTGGT+TGG 0.536620 1.2:-119891 None:intergenic
TTTGGGCACGACAATATCTC+GGG 0.539491 1.2:+121136 MS.gene24091:CDS
TATGGTGACATTTATCCACT+TGG 0.540771 1.2:+118634 MS.gene24091:CDS
CATCAAGATGATAGCTCTGA+AGG 0.545903 1.2:-120860 None:intergenic
TATGTTGCACTTGACAATGT+AGG 0.546497 1.2:+121090 MS.gene24091:CDS
TCTGATAGACCTAGTGGTGG+TGG 0.549192 1.2:+120759 MS.gene24091:CDS
AATCCTGTACTCACCTCCAC+CGG 0.553249 1.2:+120414 MS.gene24091:CDS
ATCACCAGCGGGATCATCGA+AGG 0.554567 1.2:-119837 None:intergenic
CAGGCTTAGAATATCAAATG+TGG 0.556229 1.2:+120203 MS.gene24091:CDS
ATTGTGCTATCAAGTTCAGC+TGG 0.557942 1.2:+120618 MS.gene24091:CDS
AGAAGGAACTCATACGAAGA+TGG 0.560891 1.2:+119647 MS.gene24091:CDS
GACCAATCAATTTGGATGGT+GGG 0.562075 1.2:-120492 None:intergenic
AGCAACAATAGTAGTAGTGA+TGG 0.562486 1.2:-118575 None:intergenic
ATGCAGGGAATACTTATCAA+TGG 0.562736 1.2:+118788 MS.gene24091:intron
CAGAATGAATGTCTGGTCCT+GGG 0.565547 1.2:-118817 None:intergenic
GCTTTGTGGAATCCAAGAGA+TGG 0.565601 1.2:-119761 None:intergenic
CAAGGACCAATCAATTTGGA+TGG 0.569010 1.2:-120496 None:intergenic
AGGACAAACCTGACAGCAAG+TGG 0.574032 1.2:+120537 MS.gene24091:CDS
GTGAACGTCAAGGGAGGAGT+AGG 0.576942 1.2:-120310 None:intergenic
CTAGTAACCGCGGATCAACC+TGG 0.581592 1.2:+120354 MS.gene24091:CDS
GGACCAATCAATTTGGATGG+TGG 0.582450 1.2:-120493 None:intergenic
CTCAGGTATATCCAAAGTCA+TGG 0.583355 1.2:+121058 MS.gene24091:CDS
GGTGGAGGTGAGTACAGGAT+TGG 0.585429 1.2:-120412 None:intergenic
GTAGCGAAGAATTCCGGTGG+AGG 0.585607 1.2:-120427 None:intergenic
ACAACATGTCCCATTCCACC+TGG 0.586121 1.2:+119680 MS.gene24091:CDS
CTTTGTGGAATCCAAGAGAT+GGG 0.586569 1.2:-119760 None:intergenic
ACCTGTTGGCGAACACCAAG+TGG 0.587332 1.2:-118649 None:intergenic
GTTCCCTTCGATGATCCCGC+TGG 0.588900 1.2:+119833 MS.gene24091:CDS
ATGTAGGAATGTGGAACTTG+AGG 0.589636 1.2:+121106 MS.gene24091:CDS
ACAGAATCACAAGATGAAGC+TGG 0.591529 1.2:+120254 MS.gene24091:CDS
AGGCTTAGAATATCAAATGT+GGG 0.595758 1.2:+120204 MS.gene24091:CDS
TTGACCCACGTGAACGTCAA+GGG 0.599164 1.2:-120319 None:intergenic
AATGTTGCATGCAGTATGGA+TGG 0.602475 1.2:+120970 MS.gene24091:intron
ATAAGAATTCCATCAGGGAA+AGG 0.603702 1.2:-120011 None:intergenic
TCAGGTTTGTCCTAATGGAG+CGG 0.604135 1.2:-120527 None:intergenic
AAGTGGATAAATGTCACCAT+AGG 0.607359 1.2:-118632 None:intergenic
AGGACAGTGTAATCACCAGC+GGG 0.611484 1.2:-119848 None:intergenic
CCATAATGGTATGATCCTTG+CGG 0.613798 1.2:-120573 None:intergenic
TACAGGATTGGTAAATCGAG+AGG 0.614756 1.2:-120400 None:intergenic
AACGTCAAGGGAGGAGTAGG+TGG 0.614850 1.2:-120307 None:intergenic
TCATCTCTCAATGTGGAGCA+AGG 0.615730 1.2:+120056 MS.gene24091:CDS
AGATAAATACCACCACCACT+AGG 0.622790 1.2:-120768 None:intergenic
ATTGACCCACGTGAACGTCA+AGG 0.633112 1.2:-120320 None:intergenic
TAGTAGTAGTGATGGCAAAG+AGG 0.634339 1.2:-118567 None:intergenic
GCAGTATGGATGGAGGACAA+TGG 0.636774 1.2:+120980 MS.gene24091:intron
ATGAAGCTGGTAGAAGTGGA+AGG 0.637021 1.2:+120267 MS.gene24091:CDS
TCCTCCCTTGACGTTCACGT+GGG 0.641683 1.2:+120315 MS.gene24091:CDS
ATCTCTGATAGACCTAGTGG+TGG 0.645124 1.2:+120756 MS.gene24091:CDS
TATGTAAAGTTCTTTCCAGG+TGG 0.645224 1.2:-119695 None:intergenic
GAATTCTTATCAATGGTCGT+GGG 0.645558 1.2:+120024 MS.gene24091:CDS
AGTTTCGCGTTCCACCACTC+AGG 0.647895 1.2:+121041 MS.gene24091:CDS
GGACCAAGACCAAACCCGCA+AGG 0.650703 1.2:+120558 MS.gene24091:CDS
TCACCAGCGGGATCATCGAA+GGG 0.652297 1.2:-119836 None:intergenic
CACTTGACAATGTAGGAATG+TGG 0.655047 1.2:+121097 MS.gene24091:CDS
CATTGATAAGAATTCCATCA+GGG 0.656365 1.2:-120016 None:intergenic
TATCAGAGATGCTTCCAGGA+CGG 0.660561 1.2:-120743 None:intergenic
GTCTTGACCAGGTTGATCCG+CGG 0.661746 1.2:-120361 None:intergenic
ACAATATAATAGTCTTGACC+AGG 0.663963 1.2:-120372 None:intergenic
TGGAGGATCATCTCTCAATG+TGG 0.668048 1.2:+120049 MS.gene24091:CDS
AGCATCTCTGATAGACCTAG+TGG 0.673066 1.2:+120753 MS.gene24091:CDS
TTGGTACAAGTCCAACCACA+CGG 0.685221 1.2:+119880 MS.gene24091:CDS
CCAGCTTAAGAGGAGTATCG+GGG 0.687155 1.2:-120692 None:intergenic
ACCCACGTGAACGTCAAGGG+AGG 0.690184 1.2:-120316 None:intergenic
AAGGACAGTGTAATCACCAG+CGG 0.694966 1.2:-119849 None:intergenic
GCTGTAGCGAAGAATTCCGG+TGG 0.700350 1.2:-120430 None:intergenic
CTTTGGATATACCTGAGTGG+TGG 0.703031 1.2:-121052 None:intergenic
ATACTCAGTTCTAGTAACCG+CGG 0.703123 1.2:+120344 MS.gene24091:CDS
CAGCTTAAGAGGAGTATCGG+GGG 0.703277 1.2:-120691 None:intergenic
GTTGCATGCAGTATGGATGG+AGG 0.723579 1.2:+120973 MS.gene24091:intron
ATGGCATGATAAACTTAACG+AGG 0.737321 1.2:+120592 MS.gene24091:CDS
TGGTAGCTAAGTCATCAAAG+GGG 0.773118 1.2:-121267 None:intergenic
TGACTTTGGATATACCTGAG+TGG 0.778186 1.2:-121055 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATATAACAAATTAAGTT+TGG - chr1.2:118757-118776 None:intergenic 15.0%
!!! CACTTTTATATTCATTTATA+TGG + chr1.2:119270-119289 MS.gene24091:intron 15.0%
!! AAAGCATGAATAAAGTAAAT+GGG - chr1.2:119427-119446 None:intergenic 20.0%
!! AATGAAAATGATCTATATGA+TGG - chr1.2:120922-120941 None:intergenic 20.0%
!! CACAATAATTTAAAAAGTAG+TGG - chr1.2:119525-119544 None:intergenic 20.0%
!! TATATTCATTTATATGGAGA+TGG + chr1.2:119276-119295 MS.gene24091:intron 20.0%
!! TCAATTCCAAATTAAGTAAT+TGG + chr1.2:119327-119346 MS.gene24091:intron 20.0%
!! TCATTTATTAATCAATTGCA+AGG - chr1.2:119582-119601 None:intergenic 20.0%
!! TGAAATATAAATATACCTGT+TGG - chr1.2:118666-118685 None:intergenic 20.0%
!!! TTGACACAACTAATATTTTT+TGG + chr1.2:120149-120168 MS.gene24091:intron 20.0%
! AAAATGATTCAGATCCAATA+AGG - chr1.2:118703-118722 None:intergenic 25.0%
! AAGCATGAATAAAGTAAATG+GGG - chr1.2:119426-119445 None:intergenic 25.0%
! ACGTGAAATAGTAGTATATT+AGG + chr1.2:119497-119516 MS.gene24091:intron 25.0%
! AGATAATTAGCTCAATTTGA+TGG - chr1.2:119469-119488 None:intergenic 25.0%
! ATTGTATTGTATTATGTGAC+AGG + chr1.2:119953-119972 MS.gene24091:intron 25.0%
! CAAAGCATGAATAAAGTAAA+TGG - chr1.2:119428-119447 None:intergenic 25.0%
! CAAATTTAGTACTAATGTTG+AGG - chr1.2:120132-120151 None:intergenic 25.0%
! CGTGAAATAGTAGTATATTA+GGG + chr1.2:119498-119517 MS.gene24091:intron 25.0%
! GACTCATATAATGTTTCATT+TGG + chr1.2:120102-120121 MS.gene24091:intron 25.0%
! GATGAAAAAAGAAATGTGAA+AGG - chr1.2:118918-118937 None:intergenic 25.0%
! TTAAGTTTATCATGCCATAA+TGG - chr1.2:120590-120609 None:intergenic 25.0%
!! TATAGTATGTGTGTTTTGTA+AGG - chr1.2:119181-119200 None:intergenic 25.0%
!! TGTTATTTACACATAGATAG+AGG - chr1.2:118949-118968 None:intergenic 25.0%
!!! CCTCAAAAGTCTTTTTAATT+GGG + chr1.2:119396-119415 MS.gene24091:intron 25.0%
!!! TATATGAGTCTTATTCATGT+AGG - chr1.2:120092-120111 None:intergenic 25.0%
ACATGACATAAAAACAGGAA+TGG + chr1.2:119614-119633 MS.gene24091:intron 30.0%
ACATGACATGACATAAAAAC+AGG + chr1.2:119609-119628 MS.gene24091:intron 30.0%
ACTAACCATGAAATGAGAAA+AGG - chr1.2:118890-118909 None:intergenic 30.0%
ACTACTATTTCACGTAATCA+AGG - chr1.2:119492-119511 None:intergenic 30.0%
AGGCTTAGAATATCAAATGT+GGG + chr1.2:120204-120223 MS.gene24091:CDS 30.0%
AGTAATGCATTCTTAGGAAT+AGG - chr1.2:121216-121235 None:intergenic 30.0%
ATATGAAGATATCAAACGTG+TGG - chr1.2:119051-119070 None:intergenic 30.0%
ATGTATGTAAAGTTCTTTCC+AGG - chr1.2:119701-119720 None:intergenic 30.0%
CATTGATAAGAATTCCATCA+GGG - chr1.2:120019-120038 None:intergenic 30.0%
CTTCAAGTGAAAGATCAAAT+TGG + chr1.2:119722-119741 MS.gene24091:CDS 30.0%
CTTTCATCCTTATACCTTAT+TGG + chr1.2:118686-118705 MS.gene24091:intron 30.0%
GTAATGCATTCTTAGGAATA+GGG - chr1.2:121215-121234 None:intergenic 30.0%
TAGAATATCAAATGTGGGAT+TGG + chr1.2:120209-120228 MS.gene24091:CDS 30.0%
TATTATGTGACAGGATTTGA+AGG + chr1.2:119962-119981 MS.gene24091:intron 30.0%
TTCAGATCCAATAAGGTATA+AGG - chr1.2:118696-118715 None:intergenic 30.0%
TTCTATTATTTCCCATCTCT+TGG + chr1.2:119749-119768 MS.gene24091:CDS 30.0%
! ACAATATAATAGTCTTGACC+AGG - chr1.2:120375-120394 None:intergenic 30.0%
! ACCTAGTACTACTACATTTT+GGG + chr1.2:119086-119105 MS.gene24091:intron 30.0%
! CCCAATTAAAAAGACTTTTG+AGG - chr1.2:119399-119418 None:intergenic 30.0%
! GCCTCAAAAGTCTTTTTAAT+TGG + chr1.2:119395-119414 MS.gene24091:intron 30.0%
! TACCTAGTACTACTACATTT+TGG + chr1.2:119085-119104 MS.gene24091:intron 30.0%
!! CAAAAGTCTTTTTAATTGGG+TGG + chr1.2:119399-119418 MS.gene24091:intron 30.0%
!!! ATTAAAAAGACTTTTGAGGC+AGG - chr1.2:119395-119414 None:intergenic 30.0%
!!! ATTTTGGGATGTTTGTTTGT+TGG + chr1.2:119101-119120 MS.gene24091:intron 30.0%
!!! TTTTGGGATGTTTGTTTGTT+GGG + chr1.2:119102-119121 MS.gene24091:intron 30.0%
AAGTGGATAAATGTCACCAT+AGG - chr1.2:118635-118654 None:intergenic 35.0%
ACTTGTACCAATCACCAATA+AGG - chr1.2:119871-119890 None:intergenic 35.0%
ACTTGTTTCCGTTATCAAGT+TGG - chr1.2:119989-120008 None:intergenic 35.0%
AGAATGCATTACTTTGTGGT+AGG + chr1.2:121223-121242 MS.gene24091:CDS 35.0%
AGCAACAATAGTAGTAGTGA+TGG - chr1.2:118578-118597 None:intergenic 35.0%
ATAAGAATTCCATCAGGGAA+AGG - chr1.2:120014-120033 None:intergenic 35.0%
ATGCAGGGAATACTTATCAA+TGG + chr1.2:118788-118807 MS.gene24091:intron 35.0%
ATGGCATGATAAACTTAACG+AGG + chr1.2:120592-120611 MS.gene24091:CDS 35.0%
ATGTTACAGGAAAGACTTAC+AGG + chr1.2:120184-120203 MS.gene24091:intron 35.0%
CAGGCTTAGAATATCAAATG+TGG + chr1.2:120203-120222 MS.gene24091:CDS 35.0%
CCACAAAGTAATGCATTCTT+AGG - chr1.2:121222-121241 None:intergenic 35.0%
CCATTGATAAGAATTCCATC+AGG - chr1.2:120020-120039 None:intergenic 35.0%
CCTAAGAATGCATTACTTTG+TGG + chr1.2:121219-121238 MS.gene24091:CDS 35.0%
CCTGATGGAATTCTTATCAA+TGG + chr1.2:120017-120036 MS.gene24091:CDS 35.0%
CTTGTTTCCGTTATCAAGTT+GGG - chr1.2:119988-120007 None:intergenic 35.0%
GAATGCATTACTTTGTGGTA+GGG + chr1.2:121224-121243 MS.gene24091:CDS 35.0%
GAATTCTTATCAATGGTCGT+GGG + chr1.2:120024-120043 MS.gene24091:CDS 35.0%
GACAATGGACAAGTGATAAA+AGG + chr1.2:120995-121014 MS.gene24091:CDS 35.0%
GAGGAATTAGAATCCTAAGT+AGG + chr1.2:119798-119817 MS.gene24091:CDS 35.0%
GCATGTTATGTTGTTAGAGT+TGG + chr1.2:118988-119007 MS.gene24091:intron 35.0%
TATCAATGTCTTCAACAGCT+TGG + chr1.2:118859-118878 MS.gene24091:CDS 35.0%
TATCTCTTGTAGTACTATGC+TGG + chr1.2:119207-119226 MS.gene24091:intron 35.0%
TATGAATGTTGCATGCAGTA+TGG + chr1.2:120966-120985 MS.gene24091:intron 35.0%
TATGGTGACATTTATCCACT+TGG + chr1.2:118634-118653 MS.gene24091:CDS 35.0%
TATGTAAAGTTCTTTCCAGG+TGG - chr1.2:119698-119717 None:intergenic 35.0%
TATGTTGCACTTGACAATGT+AGG + chr1.2:121090-121109 MS.gene24091:CDS 35.0%
TCCCAAAATGTAGTAGTACT+AGG - chr1.2:119090-119109 None:intergenic 35.0%
TCCTGTAACATCAATGACAA+GGG - chr1.2:120175-120194 None:intergenic 35.0%
TGCTGGCCAATTACTTAATT+TGG - chr1.2:119336-119355 None:intergenic 35.0%
TTCCTGTAACATCAATGACA+AGG - chr1.2:120176-120195 None:intergenic 35.0%
TTTACACATAGATAGAGGCT+AGG - chr1.2:118944-118963 None:intergenic 35.0%
TTTGTCACAGAATGAATGTC+TGG - chr1.2:118827-118846 None:intergenic 35.0%
! ACGAACCTTTTCTCATTTCA+TGG + chr1.2:118882-118901 MS.gene24091:CDS 35.0%
! ATGTTTTGTGACAAACATGC+AGG + chr1.2:118772-118791 MS.gene24091:intron 35.0%
! GAACTTGAGGTCAGAATTTT+GGG + chr1.2:121119-121138 MS.gene24091:CDS 35.0%
! GAAGGATGTCTTCATCATTT+TGG - chr1.2:120845-120864 None:intergenic 35.0%
! GTAAATGATTAGTTACCGTG+TGG - chr1.2:119898-119917 None:intergenic 35.0%
! TCAATTTGATGGTTAGCTAG+AGG - chr1.2:119458-119477 None:intergenic 35.0%
! TGTTTTGTGACAAACATGCA+GGG + chr1.2:118773-118792 MS.gene24091:intron 35.0%
!! GCTACTCTTTCTTTGTTGTT+GGG + chr1.2:120883-120902 MS.gene24091:CDS 35.0%
AAAAGTGAAGCTAGCAGATC+TGG - chr1.2:119257-119276 None:intergenic 40.0%
AAAGTGAAGCTAGCAGATCT+GGG - chr1.2:119256-119275 None:intergenic 40.0%
AAAGTTCTTTCCAGGTGGAA+TGG - chr1.2:119693-119712 None:intergenic 40.0%
AACAAGTTACCTTTCCCTGA+TGG + chr1.2:120002-120021 MS.gene24091:CDS 40.0%
AAGTTCTTTCCAGGTGGAAT+GGG - chr1.2:119692-119711 None:intergenic 40.0%
AATGTTGCATGCAGTATGGA+TGG + chr1.2:120970-120989 MS.gene24091:intron 40.0%
ACAGAATCACAAGATGAAGC+TGG + chr1.2:120254-120273 MS.gene24091:CDS 40.0%
ACCACTTGTATTGTGTTGTG+TGG + chr1.2:119129-119148 MS.gene24091:intron 40.0%
AGAAGGAACTCATACGAAGA+TGG + chr1.2:119647-119666 MS.gene24091:CDS 40.0%
AGATAAATACCACCACCACT+AGG - chr1.2:120771-120790 None:intergenic 40.0%
AGTTCAGCTGGACAAGTTAA+TGG + chr1.2:120630-120649 MS.gene24091:CDS 40.0%
ATCCATACAGGTTCTTCAAC+TGG + chr1.2:118602-118621 MS.gene24091:CDS 40.0%
ATGTAGGAATGTGGAACTTG+AGG + chr1.2:121106-121125 MS.gene24091:CDS 40.0%
ATTGTGCTATCAAGTTCAGC+TGG + chr1.2:120618-120637 MS.gene24091:CDS 40.0%
CAAGGACCAATCAATTTGGA+TGG - chr1.2:120499-120518 None:intergenic 40.0%
CACTTGACAATGTAGGAATG+TGG + chr1.2:121097-121116 MS.gene24091:CDS 40.0%
CATAATGGTATGATCCTTGC+GGG - chr1.2:120575-120594 None:intergenic 40.0%
CCATAATGGTATGATCCTTG+CGG - chr1.2:120576-120595 None:intergenic 40.0%
CTCAGGTATATCCAAAGTCA+TGG + chr1.2:121058-121077 MS.gene24091:CDS 40.0%
CTTCAGAGCTATCATCTTGA+TGG + chr1.2:120861-120880 MS.gene24091:CDS 40.0%
CTTTGTGGAATCCAAGAGAT+GGG - chr1.2:119763-119782 None:intergenic 40.0%
GACCAATCAATTTGGATGGT+GGG - chr1.2:120495-120514 None:intergenic 40.0%
GGAATTCTTATCAATGGTCG+TGG + chr1.2:120023-120042 MS.gene24091:CDS 40.0%
GGTGATTACACTGTCCTTAT+TGG + chr1.2:119854-119873 MS.gene24091:CDS 40.0%
GGTTCAAGGACCAATCAATT+TGG - chr1.2:120503-120522 None:intergenic 40.0%
GTTCAGCTGGACAAGTTAAT+GGG + chr1.2:120631-120650 MS.gene24091:CDS 40.0%
TAGATAGCAGTCCATGACTT+TGG - chr1.2:121072-121091 None:intergenic 40.0%
TAGTAGTAGTGATGGCAAAG+AGG - chr1.2:118570-118589 None:intergenic 40.0%
TGACTTTGGATATACCTGAG+TGG - chr1.2:121058-121077 None:intergenic 40.0%
TTCAACTGGAACGTTACCTA+TGG + chr1.2:118616-118635 MS.gene24091:CDS 40.0%
TTCCAGTTGAAGAACCTGTA+TGG - chr1.2:118607-118626 None:intergenic 40.0%
TTGAAGGCCCAACTTGATAA+CGG + chr1.2:119978-119997 MS.gene24091:CDS 40.0%
TTGTAGTACTATGCTGGTCA+TGG + chr1.2:119213-119232 MS.gene24091:intron 40.0%
TTGTTGCTGAAGATCCATAC+AGG + chr1.2:118590-118609 MS.gene24091:CDS 40.0%
! ACACTGTCCTTATTGGTGAT+TGG + chr1.2:119861-119880 MS.gene24091:CDS 40.0%
! ATACTCAGTTCTAGTAACCG+CGG + chr1.2:120344-120363 MS.gene24091:CDS 40.0%
! ATGATTAGTTACCGTGTGGT+TGG - chr1.2:119894-119913 None:intergenic 40.0%
! GGAACTTGAGGTCAGAATTT+TGG + chr1.2:121118-121137 MS.gene24091:CDS 40.0%
! GGCTACTCTTTCTTTGTTGT+TGG + chr1.2:120882-120901 MS.gene24091:CDS 40.0%
! TACAGGATTGGTAAATCGAG+AGG - chr1.2:120403-120422 None:intergenic 40.0%
! TCATACGAAGATGGAGTGTT+TGG + chr1.2:119656-119675 MS.gene24091:CDS 40.0%
! TGGCTAGCTAACTAACTAAC+AGG - chr1.2:119031-119050 None:intergenic 40.0%
! TTTTGGGCACGACAATATCT+CGG + chr1.2:121135-121154 MS.gene24091:CDS 40.0%
!! CATCAAGATGATAGCTCTGA+AGG - chr1.2:120863-120882 None:intergenic 40.0%
AAGAAGTCAGCCAGCTTAAG+AGG - chr1.2:120705-120724 None:intergenic 45.0%
AAGGACAGTGTAATCACCAG+CGG - chr1.2:119852-119871 None:intergenic 45.0%
AATTGGCCAGCACTGCAATT+TGG + chr1.2:119344-119363 MS.gene24091:intron 45.0%
ACAGAATGAATGTCTGGTCC+TGG - chr1.2:118821-118840 None:intergenic 45.0%
AGAAAGCCAAATTGCAGTGC+TGG - chr1.2:119353-119372 None:intergenic 45.0%
AGCATCTCTGATAGACCTAG+TGG + chr1.2:120753-120772 MS.gene24091:CDS 45.0%
AGTACTATGCTGGTCATGGT+GGG + chr1.2:119217-119236 MS.gene24091:intron 45.0%
ATCTCTGATAGACCTAGTGG+TGG + chr1.2:120756-120775 MS.gene24091:CDS 45.0%
ATGAAGCTGGTAGAAGTGGA+AGG + chr1.2:120267-120286 MS.gene24091:CDS 45.0%
ATTGTGTTGTGTGGCTGCAA+AGG + chr1.2:119138-119157 MS.gene24091:intron 45.0%
CAAGATGAAGCTGGTAGAAG+TGG + chr1.2:120263-120282 MS.gene24091:CDS 45.0%
CACATAGATAGAGGCTAGGA+TGG - chr1.2:118940-118959 None:intergenic 45.0%
CAGAATGAATGTCTGGTCCT+GGG - chr1.2:118820-118839 None:intergenic 45.0%
CCGCAAGGATCATACCATTA+TGG + chr1.2:120573-120592 MS.gene24091:CDS 45.0%
CGTATGAGTTCCTTCTTTGC+TGG - chr1.2:119643-119662 None:intergenic 45.0%
CTGGAATTCTTGGCCTACTT+AGG - chr1.2:119814-119833 None:intergenic 45.0%
CTTATCAATGGCCAATTCCC+AGG + chr1.2:118800-118819 MS.gene24091:CDS 45.0%
CTTTGGATATACCTGAGTGG+TGG - chr1.2:121055-121074 None:intergenic 45.0%
GACCCACCATCCAAATTGAT+TGG + chr1.2:120490-120509 MS.gene24091:CDS 45.0%
GCCACACAACACAATACAAG+TGG - chr1.2:119133-119152 None:intergenic 45.0%
GCCCTTGTCATTGATGTTAC+AGG + chr1.2:120171-120190 MS.gene24091:intron 45.0%
GCTTTGTGGAATCCAAGAGA+TGG - chr1.2:119764-119783 None:intergenic 45.0%
GGACCAATCAATTTGGATGG+TGG - chr1.2:120496-120515 None:intergenic 45.0%
GTTGCTGTAGCGAAGAATTC+CGG - chr1.2:120436-120455 None:intergenic 45.0%
TAGTACTATGCTGGTCATGG+TGG + chr1.2:119216-119235 MS.gene24091:intron 45.0%
TATCAGAGATGCTTCCAGGA+CGG - chr1.2:120746-120765 None:intergenic 45.0%
TCAGGTTTGTCCTAATGGAG+CGG - chr1.2:120530-120549 None:intergenic 45.0%
TCATCTCTCAATGTGGAGCA+AGG + chr1.2:120056-120075 MS.gene24091:CDS 45.0%
TCGAAGGGAACTGGAATTCT+TGG - chr1.2:119824-119843 None:intergenic 45.0%
TGCTGTCAGGTTTGTCCTAA+TGG - chr1.2:120535-120554 None:intergenic 45.0%
TGGAGGATCATCTCTCAATG+TGG + chr1.2:120049-120068 MS.gene24091:CDS 45.0%
TTACTTTGTGGTAGGGCAAC+TGG + chr1.2:121231-121250 MS.gene24091:CDS 45.0%
TTGGTACAAGTCCAACCACA+CGG + chr1.2:119880-119899 MS.gene24091:CDS 45.0%
TTTGGGCACGACAATATCTC+GGG + chr1.2:121136-121155 MS.gene24091:CDS 45.0%
! AGCCAGCTTAAGAGGAGTAT+CGG - chr1.2:120697-120716 None:intergenic 45.0%
! GCTGACTTCTTCAAGATAGC+AGG + chr1.2:120714-120733 MS.gene24091:CDS 45.0%
!! CTGCGTCTCTAAGATTGTAC+TGG - chr1.2:121023-121042 None:intergenic 45.0%
!!! AAAAGACTTTTGAGGCAGGC+AGG - chr1.2:119391-119410 None:intergenic 45.0%
AACTCTGCAGGTCCAGTTTC+AGG + chr1.2:120453-120472 MS.gene24091:CDS 50.0%
AATCCTGTACTCACCTCCAC+CGG + chr1.2:120414-120433 MS.gene24091:CDS 50.0%
ACAACATGTCCCATTCCACC+TGG + chr1.2:119680-119699 MS.gene24091:CDS 50.0%
AGGACAAACCTGACAGCAAG+TGG + chr1.2:120537-120556 MS.gene24091:CDS 50.0%
AGGACAGTGTAATCACCAGC+GGG - chr1.2:119851-119870 None:intergenic 50.0%
ATAGCAGGTGTTTACCGTCC+TGG + chr1.2:120729-120748 MS.gene24091:CDS 50.0%
ATTGACCCACGTGAACGTCA+AGG - chr1.2:120323-120342 None:intergenic 50.0%
CAAAACCACCAGCAGCTTTG+TGG - chr1.2:119778-119797 None:intergenic 50.0%
CAGGTTTGTCCTAATGGAGC+GGG - chr1.2:120529-120548 None:intergenic 50.0%
CTTATCAATGGTCGTGGGTC+TGG + chr1.2:120029-120048 MS.gene24091:CDS 50.0%
CTTGGATTCCACAAAGCTGC+TGG + chr1.2:119767-119786 MS.gene24091:CDS 50.0%
GAATGTCTGGTCCTGGGAAT+TGG - chr1.2:118814-118833 None:intergenic 50.0%
GCAGTATGGATGGAGGACAA+TGG + chr1.2:120980-120999 MS.gene24091:intron 50.0%
GGAATGGAGTCCAGCAAAGA+AGG + chr1.2:119630-119649 MS.gene24091:intron 50.0%
GGTCTATCAGAGATGCTTCC+AGG - chr1.2:120750-120769 None:intergenic 50.0%
GTTGCATGCAGTATGGATGG+AGG + chr1.2:120973-120992 MS.gene24091:intron 50.0%
GTTGTGTGGCTGCAAAGGAT+AGG + chr1.2:119143-119162 MS.gene24091:intron 50.0%
TCTGATAGACCTAGTGGTGG+TGG + chr1.2:120759-120778 MS.gene24091:CDS 50.0%
TGGTATGATCCTTGCGGGTT+TGG - chr1.2:120570-120589 None:intergenic 50.0%
TTGACCCACGTGAACGTCAA+GGG - chr1.2:120322-120341 None:intergenic 50.0%
! CACAAAGCTGCTGGTGGTTT+TGG + chr1.2:119776-119795 MS.gene24091:CDS 50.0%
!! CAGCTTAAGAGGAGTATCGG+GGG - chr1.2:120694-120713 None:intergenic 50.0%
!! CCAGCTTAAGAGGAGTATCG+GGG - chr1.2:120695-120714 None:intergenic 50.0%
!! GCCAGCTTAAGAGGAGTATC+GGG - chr1.2:120696-120715 None:intergenic 50.0%
!!! AAAGCTGCTGGTGGTTTTGG+AGG + chr1.2:119779-119798 MS.gene24091:CDS 50.0%
AACGTCAAGGGAGGAGTAGG+TGG - chr1.2:120310-120329 None:intergenic 55.0%
ACCTGTTGGCGAACACCAAG+TGG - chr1.2:118652-118671 None:intergenic 55.0%
AGTTTCGCGTTCCACCACTC+AGG + chr1.2:121041-121060 MS.gene24091:CDS 55.0%
ATCAATGGTCGTGGGTCTGG+AGG + chr1.2:120032-120051 MS.gene24091:CDS 55.0%
ATCACCAGCGGGATCATCGA+AGG - chr1.2:119840-119859 None:intergenic 55.0%
ATTCCGGTGGAGGTGAGTAC+AGG - chr1.2:120420-120439 None:intergenic 55.0%
CAAGGGAGGAGTAGGTGGTT+TGG - chr1.2:120305-120324 None:intergenic 55.0%
CCCCGATACTCCTCTTAAGC+TGG + chr1.2:120692-120711 MS.gene24091:CDS 55.0%
CTAGTAACCGCGGATCAACC+TGG + chr1.2:120354-120373 MS.gene24091:CDS 55.0%
CTTCGCTACAGCAACTCTGC+AGG + chr1.2:120441-120460 MS.gene24091:CDS 55.0%
GCTAGCAGATCTGGGTGGAA+TGG - chr1.2:119248-119267 None:intergenic 55.0%
GCTGTAGCGAAGAATTCCGG+TGG - chr1.2:120433-120452 None:intergenic 55.0%
GGATTCCACAAAGCTGCTGG+TGG + chr1.2:119770-119789 MS.gene24091:CDS 55.0%
GGTGGAGGTGAGTACAGGAT+TGG - chr1.2:120415-120434 None:intergenic 55.0%
GTAGCGAAGAATTCCGGTGG+AGG - chr1.2:120430-120449 None:intergenic 55.0%
GTGAACGTCAAGGGAGGAGT+AGG - chr1.2:120313-120332 None:intergenic 55.0%
GTGAAGCTAGCAGATCTGGG+TGG - chr1.2:119253-119272 None:intergenic 55.0%
TCACCAGCGGGATCATCGAA+GGG - chr1.2:119839-119858 None:intergenic 55.0%
TCCTCCCTTGACGTTCACGT+GGG + chr1.2:120315-120334 MS.gene24091:CDS 55.0%
TGAACCAAGCCCGCTCCATT+AGG + chr1.2:120517-120536 MS.gene24091:CDS 55.0%
! AATGGAGCGGGCTTGGTTCA+AGG - chr1.2:120517-120536 None:intergenic 55.0%
! GATCCTTGCGGGTTTGGTCT+TGG - chr1.2:120564-120583 None:intergenic 55.0%
! GGAGGAGTAGGTGGTTTGGA+GGG - chr1.2:120301-120320 None:intergenic 55.0%
! TTGTCCTAATGGAGCGGGCT+TGG - chr1.2:120524-120543 None:intergenic 55.0%
!! ATTTGGATGGTGGGTCCACC+AGG - chr1.2:120486-120505 None:intergenic 55.0%
!! GTCTTGACCAGGTTGATCCG+CGG - chr1.2:120364-120383 None:intergenic 55.0%
!! GTCTTGGTCCACTTGCTGTC+AGG - chr1.2:120548-120567 None:intergenic 55.0%
!! TCCACTTGGTGTTCGCCAAC+AGG + chr1.2:118648-118667 MS.gene24091:CDS 55.0%
!! TTTGGATGGTGGGTCCACCA+GGG - chr1.2:120485-120504 None:intergenic 55.0%
ACCCACGTGAACGTCAAGGG+AGG - chr1.2:120319-120338 None:intergenic 60.0%
CTCCTCCCTTGACGTTCACG+TGG + chr1.2:120314-120333 MS.gene24091:CDS 60.0%
GCGGGATCATCGAAGGGAAC+TGG - chr1.2:119833-119852 None:intergenic 60.0%
GGACCAAGACCAAACCCGCA+AGG + chr1.2:120558-120577 MS.gene24091:CDS 60.0%
GTTCCCTTCGATGATCCCGC+TGG + chr1.2:119833-119852 MS.gene24091:CDS 60.0%
! GGGAGGAGTAGGTGGTTTGG+AGG - chr1.2:120302-120321 None:intergenic 60.0%
!! TTGGATGGTGGGTCCACCAG+GGG - chr1.2:120484-120503 None:intergenic 60.0%
!!! GACTTTTGAGGCAGGCAGGC+AGG - chr1.2:119387-119406 None:intergenic 60.0%
CCAGGGGGTGGACCTGAAAC+TGG - chr1.2:120468-120487 None:intergenic 65.0%
! CCAGTTTCAGGTCCACCCCC+TGG + chr1.2:120465-120484 MS.gene24091:CDS 65.0%
! GTTTCAGGTCCACCCCCTGG+TGG + chr1.2:120468-120487 MS.gene24091:CDS 65.0%
!! TGGATGGTGGGTCCACCAGG+GGG - chr1.2:120483-120502 None:intergenic 65.0%
!! ATGGTGGGTCCACCAGGGGG+TGG - chr1.2:120480-120499 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 118529 121275 118529 ID=MS.gene24091
chr1.2 mRNA 118529 121275 118529 ID=MS.gene24091.t1;Parent=MS.gene24091
chr1.2 exon 118529 118669 118529 ID=MS.gene24091.t1.exon1;Parent=MS.gene24091.t1
chr1.2 CDS 118529 118669 118529 ID=cds.MS.gene24091.t1;Parent=MS.gene24091.t1
chr1.2 exon 118794 118903 118794 ID=MS.gene24091.t1.exon2;Parent=MS.gene24091.t1
chr1.2 CDS 118794 118903 118794 ID=cds.MS.gene24091.t1;Parent=MS.gene24091.t1
chr1.2 exon 119631 119901 119631 ID=MS.gene24091.t1.exon3;Parent=MS.gene24091.t1
chr1.2 CDS 119631 119901 119631 ID=cds.MS.gene24091.t1;Parent=MS.gene24091.t1
chr1.2 exon 119975 120077 119975 ID=MS.gene24091.t1.exon4;Parent=MS.gene24091.t1
chr1.2 CDS 119975 120077 119975 ID=cds.MS.gene24091.t1;Parent=MS.gene24091.t1
chr1.2 exon 120193 120904 120193 ID=MS.gene24091.t1.exon5;Parent=MS.gene24091.t1
chr1.2 CDS 120193 120904 120193 ID=cds.MS.gene24091.t1;Parent=MS.gene24091.t1
chr1.2 exon 120984 121275 120984 ID=MS.gene24091.t1.exon6;Parent=MS.gene24091.t1
chr1.2 CDS 120984 121275 120984 ID=cds.MS.gene24091.t1;Parent=MS.gene24091.t1
Gene Sequence

>MS.gene24091

ATGGCACTGAACTTGGTGTTATTATGTGTTAGTGTTTACCTCTTTGCCATCACTACTACTATTGTTGCTGAAGATCCATACAGGTTCTTCAACTGGAACGTTACCTATGGTGACATTTATCCACTTGGTGTTCGCCAACAGGTATATTTATATTTCACTTTCATCCTTATACCTTATTGGATCTGAATCATTTTGATTAATTAATTGATTCATCAACTAGATAGACCAAACTTAATTTGTTATATGTTTTGTGACAAACATGCAGGGAATACTTATCAATGGCCAATTCCCAGGACCAGACATTCATTCTGTGACAAATGATAATCTCATTATCAATGTCTTCAACAGCTTGGACGAACCTTTTCTCATTTCATGGTTAGTTAGTACCTTTCACATTTCTTTTTTCATCCATCCTAGCCTCTATCTATGTGTAAATAACAAAAAGAATTAAACACGAAAGCATGTTATGTTGTTAGAGTTGGTTTCTTTTAATGATGTTCCTGTTAGTTAGTTAGCTAGCCACACGTTTGATATCTTCATATTCATCATATCATACTACCTAGTACTACTACATTTTGGGATGTTTGTTTGTTGGGTCACACCACTTGTATTGTGTTGTGTGGCTGCAAAGGATAGGAAAATGATGAAACCTTACAAAACACACATACTATACTATCTTATCTCTTGTAGTACTATGCTGGTCATGGTGGGTCAATCCATTCCACCCAGATCTGCTAGCTTCACTTTTATATTCATTTATATGGAGATGGAAGACATTTTCACAAGTAATATTAATATTCAATTCCAAATTAAGTAATTGGCCAGCACTGCAATTTGGCTTTCTATACTTGCTTGCCTGCCTGCCTGCCTCAAAAGTCTTTTTAATTGGGTGGACCCCATTTACTTTATTCATGCTTTGCTGTTCTCCTCTAGCTAACCATCAAATTGAGCTAATTATCTCCTTGATTACGTGAAATAGTAGTATATTAGGGACCACTACTTTTTAAATTATTGTGAATTTGTGATAATACTAACTGATAAGACATATAACCTTGCAATTGATTAATAAATGATGACATGACATGACATGACATAAAAACAGGAATGGAGTCCAGCAAAGAAGGAACTCATACGAAGATGGAGTGTTTGGAACAACATGTCCCATTCCACCTGGAAAGAACTTTACATACATACTTCAAGTGAAAGATCAAATTGGTAGTTTCTATTATTTCCCATCTCTTGGATTCCACAAAGCTGCTGGTGGTTTTGGAGGAATTAGAATCCTAAGTAGGCCAAGAATTCCAGTTCCCTTCGATGATCCCGCTGGTGATTACACTGTCCTTATTGGTGATTGGTACAAGTCCAACCACACGGTAACTAATCATTTACTATCTTCATCATCATTTTCATTTTCAATAAAATTGATTGTATTGTATTATGTGACAGGATTTGAAGGCCCAACTTGATAACGGAAACAAGTTACCTTTCCCTGATGGAATTCTTATCAATGGTCGTGGGTCTGGAGGATCATCTCTCAATGTGGAGCAAGGTACTGCATTACCTACATGAATAAGACTCATATAATGTTTCATTTGGCTTTCCTCAACATTAGTACTAAATTTGACACAACTAATATTTTTTGGCCCTTGTCATTGATGTTACAGGAAAGACTTACAGGCTTAGAATATCAAATGTGGGATTGGAAAATTCACTCAACTTTCGCATACAGAATCACAAGATGAAGCTGGTAGAAGTGGAAGGAACACACACCCTCCAAACCACCTACTCCTCCCTTGACGTTCACGTGGGTCAATCATACTCAGTTCTAGTAACCGCGGATCAACCTGGTCAAGACTATTATATTGTTGTTTCCTCTCGATTTACCAATCCTGTACTCACCTCCACCGGAATTCTTCGCTACAGCAACTCTGCAGGTCCAGTTTCAGGTCCACCCCCTGGTGGACCCACCATCCAAATTGATTGGTCCTTGAACCAAGCCCGCTCCATTAGGACAAACCTGACAGCAAGTGGACCAAGACCAAACCCGCAAGGATCATACCATTATGGCATGATAAACTTAACGAGGACAATTGTGCTATCAAGTTCAGCTGGACAAGTTAATGGGAAACAAAGATACGCAATTAACAGTGTGTCTTATGTTGCCCCCGATACTCCTCTTAAGCTGGCTGACTTCTTCAAGATAGCAGGTGTTTACCGTCCTGGAAGCATCTCTGATAGACCTAGTGGTGGTGGTATTTATCTCGACACTTCTGTTATGCAAACTGACTATAGAACATTTGTTGAGATTGTTTTCCAAAATGATGAAGACATCCTTCAGAGCTATCATCTTGATGGCTACTCTTTCTTTGTTGTTGGGTGAGTATGATTTTCCATCATATAGATCATTTTCATTTCTTTAAAATCAGTCTAATCTATATATGAATGTTGCATGCAGTATGGATGGAGGACAATGGACAAGTGATAAAAGGAACCAGTACAATCTTAGAGACGCAGTTTCGCGTTCCACCACTCAGGTATATCCAAAGTCATGGACTGCTATCTATGTTGCACTTGACAATGTAGGAATGTGGAACTTGAGGTCAGAATTTTGGGCACGACAATATCTCGGGCAACAGTTTTATATGCGTGTATATACAACATCAACATCACTCAGAGATGAATACCCTATTCCTAAGAATGCATTACTTTGTGGTAGGGCAACTGGAAGACATACTCGACCCCTTTGA
Protein sequence

>MS.gene24091.t1

MALNLVLLCVSVYLFAITTTIVAEDPYRFFNWNVTYGDIYPLGVRQQGILINGQFPGPDIHSVTNDNLIINVFNSLDEPFLISWNGVQQRRNSYEDGVFGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLGFHKAAGGFGGIRILSRPRIPVPFDDPAGDYTVLIGDWYKSNHTDLKAQLDNGNKLPFPDGILINGRGSGGSSLNVEQGKTYRLRISNVGLENSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPGQDYYIVVSSRFTNPVLTSTGILRYSNSAGPVSGPPPGGPTIQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGMINLTRTIVLSSSAGQVNGKQRYAINSVSYVAPDTPLKLADFFKIAGVYRPGSISDRPSGGGIYLDTSVMQTDYRTFVEIVFQNDEDILQSYHLDGYSFFVVGMDGGQWTSDKRNQYNLRDAVSRSTTQVYPKSWTAIYVALDNVGMWNLRSEFWARQYLGQQFYMRVYTTSTSLRDEYPIPKNALLCGRATGRHTRPL