Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24472.t1 | XP_003589086.1 | 99.6 | 267 | 1 | 0 | 1 | 267 | 1 | 267 | 2.10E-150 | 541.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24472.t1 | A0A109QYD3 | 95.8 | 265 | 11 | 0 | 4 | 268 | 3 | 267 | 4.1e-147 | 521.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24472.t1 | G7ICD6 | 99.6 | 267 | 1 | 0 | 1 | 267 | 1 | 267 | 1.5e-150 | 541.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24472 | MS.gene29395 | PPI |
| MS.gene24472 | MS.gene44503 | PPI |
| MS.gene24472 | MS.gene041911 | PPI |
| MS.gene24472 | MS.gene019036 | PPI |
| MS.gene89421 | MS.gene24472 | PPI |
| MS.gene011748 | MS.gene24472 | PPI |
| MS.gene24472 | MS.gene03694 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24472.t1 | MTR_1g018320 | 99.254 | 268 | 2 | 0 | 1 | 268 | 1 | 268 | 0.0 | 553 |
| MS.gene24472.t1 | MTR_5g016150 | 57.430 | 249 | 104 | 2 | 8 | 255 | 6 | 253 | 1.70e-107 | 313 |
| MS.gene24472.t1 | MTR_4g095310 | 57.028 | 249 | 105 | 2 | 8 | 255 | 6 | 253 | 5.30e-107 | 311 |
| MS.gene24472.t1 | MTR_6g086560 | 44.141 | 256 | 140 | 3 | 10 | 263 | 21 | 275 | 1.05e-77 | 237 |
| MS.gene24472.t1 | MTR_3g045440 | 37.308 | 260 | 161 | 2 | 5 | 263 | 7 | 265 | 7.15e-72 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24472.t1 | AT3G03990 | 76.119 | 268 | 63 | 1 | 1 | 268 | 1 | 267 | 4.78e-155 | 432 |
| MS.gene24472.t1 | AT4G37470 | 53.815 | 249 | 113 | 2 | 8 | 255 | 6 | 253 | 3.23e-100 | 294 |
| MS.gene24472.t1 | AT3G24420 | 40.323 | 248 | 145 | 3 | 9 | 254 | 13 | 259 | 1.11e-72 | 224 |
Find 82 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGATCTGAGAGGGATTCT+AGG | 0.307455 | 1.1:-4591117 | MS.gene24472:CDS |
| TTCTTACTTGGCTCATCAAC+TGG | 0.321228 | 1.1:-4590944 | MS.gene24472:CDS |
| TTTGAGTGCTCCTTCTTACT+TGG | 0.356624 | 1.1:-4590956 | MS.gene24472:CDS |
| ATATATCTCTCTTCGTTTCA+AGG | 0.365649 | 1.1:-4591152 | MS.gene24472:CDS |
| GCACTCAATGTCCGTGTAGA+AGG | 0.367355 | 1.1:-4591832 | MS.gene24472:CDS |
| TTCTCCAAACTCATCCTTAT+CGG | 0.376252 | 1.1:-4591517 | MS.gene24472:CDS |
| GGCGAGAGACATGTCGGTTC+CGG | 0.382403 | 1.1:-4591061 | MS.gene24472:CDS |
| ACGGCGGTAATCAAAGTAAT+CGG | 0.390518 | 1.1:+4591675 | None:intergenic |
| ATGAGTTTGGAGAAGAGCTC+AGG | 0.397953 | 1.1:+4591526 | None:intergenic |
| GGCACCGATAAGGATGAGTT+TGG | 0.410969 | 1.1:+4591513 | None:intergenic |
| TTGTAGCTGCGGGTGAAGTA+AGG | 0.413149 | 1.1:+4591739 | None:intergenic |
| GCACGCGCTGCCATGCTGAT+TGG | 0.438801 | 1.1:+4591764 | None:intergenic |
| GAAGAGTACGGTGCAGTGGC+TGG | 0.442043 | 1.1:-4591001 | MS.gene24472:CDS |
| CTCTATGACCTCGTTTGCGC+CGG | 0.442081 | 1.1:-4591709 | MS.gene24472:CDS |
| CGGCGGTAATCAAAGTAATC+GGG | 0.456759 | 1.1:+4591676 | None:intergenic |
| ATCGTCTTCGCTCACGGCTT+CGG | 0.463258 | 1.1:-4591793 | MS.gene24472:CDS |
| CATTCCGATCATGGCGGAGA+TGG | 0.464700 | 1.1:+4591567 | None:intergenic |
| AGGGATTCTAGGACTGGTTA+AGG | 0.482320 | 1.1:-4591106 | MS.gene24472:CDS |
| GAAACGAAGAGAGATATATC+TGG | 0.482995 | 1.1:+4591156 | None:intergenic |
| GGAAGCTAGCATTCCGATCA+TGG | 0.490032 | 1.1:+4591558 | None:intergenic |
| CACTCCATCTCCGCCATGAT+CGG | 0.492864 | 1.1:-4591571 | MS.gene24472:CDS |
| GACATTGAGTGCGTCGAGGA+TGG | 0.514154 | 1.1:+4591843 | None:intergenic |
| TGAGCAAGTTCTTTCAGCAA+TGG | 0.517685 | 1.1:-4591283 | MS.gene24472:CDS |
| GAGAATGACTTTGTAGCTGC+GGG | 0.519156 | 1.1:+4591729 | None:intergenic |
| ATGTACGTCGCCACCGTCGC+CGG | 0.520997 | 1.1:+4591042 | None:intergenic |
| GAGTGACATGGAGGGAATCA+AGG | 0.521478 | 1.1:+4591611 | None:intergenic |
| AGACATGTCGGTTCCGGCGA+CGG | 0.526809 | 1.1:-4591055 | MS.gene24472:CDS |
| ACCTTGTTGTATCATGCAAA+CGG | 0.527204 | 1.1:-4591082 | MS.gene24472:CDS |
| AACTATGAAGCGTGGGTGAA+CGG | 0.527608 | 1.1:-4591255 | MS.gene24472:CDS |
| AAATACATCGTCTTCGCTCA+CGG | 0.531057 | 1.1:-4591799 | MS.gene24472:CDS |
| GCGCTGCCATGCTGATTGGT+CGG | 0.531257 | 1.1:+4591768 | None:intergenic |
| ACCTTGGGGAGGCACCGATA+AGG | 0.531923 | 1.1:+4591503 | None:intergenic |
| AATGTCCGTGTAGAAGGTTC+CGG | 0.535251 | 1.1:-4591826 | MS.gene24472:CDS |
| AGTTGATGAGCCAAGTAAGA+AGG | 0.537021 | 1.1:+4590946 | None:intergenic |
| ACATCGGCCCCGACAGCCAG+TGG | 0.545877 | 1.1:+4591225 | None:intergenic |
| GAAAATTCTCGAACAGCTGT+CGG | 0.549866 | 1.1:+4591201 | None:intergenic |
| GTGCAGTGGCTGGACACGGA+GGG | 0.550308 | 1.1:-4590991 | MS.gene24472:CDS |
| GCATCTTGGCGGGAAGAGTA+CGG | 0.553116 | 1.1:-4591013 | MS.gene24472:CDS |
| GAAGAGCTCAGGGCGGCGAA+TGG | 0.553284 | 1.1:+4591537 | None:intergenic |
| TCCTTATCGGTGCCTCCCCA+AGG | 0.565234 | 1.1:-4591504 | MS.gene24472:intron |
| TCTGAGAGGGATTCTAGGAC+TGG | 0.566008 | 1.1:-4591112 | MS.gene24472:CDS |
| TACATGAAGGAGCATCTTGG+CGG | 0.568823 | 1.1:-4591024 | MS.gene24472:CDS |
| TAAGAAGGAGCACTCAAATG+AGG | 0.570745 | 1.1:+4590961 | None:intergenic |
| CATGTCGGTTCCGGCGACGG+TGG | 0.570777 | 1.1:-4591052 | MS.gene24472:CDS |
| ACATGAAGGAGCATCTTGGC+GGG | 0.572349 | 1.1:-4591023 | MS.gene24472:CDS |
| TTACCACGGAGGATTCGAGC+AGG | 0.573004 | 1.1:-4591313 | MS.gene24472:CDS |
| TGTAGCTGCGGGTGAAGTAA+GGG | 0.576477 | 1.1:+4591740 | None:intergenic |
| GGAGGGAATCAAGGATGTTG+AGG | 0.579294 | 1.1:+4591620 | None:intergenic |
| TACGGTGCAGTGGCTGGACA+CGG | 0.580670 | 1.1:-4590995 | MS.gene24472:CDS |
| TGCAGTGGCTGGACACGGAG+GGG | 0.583201 | 1.1:-4590990 | MS.gene24472:CDS |
| GTAATCGGGGTTGACACTAC+CGG | 0.583405 | 1.1:+4591690 | None:intergenic |
| CGTAAGCACAGCGAGTGACA+TGG | 0.585487 | 1.1:+4591599 | None:intergenic |
| TGAGTTTGGAGAAGAGCTCA+GGG | 0.586698 | 1.1:+4591527 | None:intergenic |
| GCGGGAAGAGTACGGTGCAG+TGG | 0.588508 | 1.1:-4591005 | MS.gene24472:CDS |
| GGTGCAGTGGCTGGACACGG+AGG | 0.590752 | 1.1:-4590992 | MS.gene24472:CDS |
| AGAGAATGACTTTGTAGCTG+CGG | 0.594196 | 1.1:+4591728 | None:intergenic |
| ACGTACATGAAGGAGCATCT+TGG | 0.596989 | 1.1:-4591027 | MS.gene24472:CDS |
| GGAAGCAAACTATGAAGCGT+GGG | 0.598905 | 1.1:-4591262 | MS.gene24472:CDS |
| GACGGTGGCGACGTACATGA+AGG | 0.605329 | 1.1:-4591037 | MS.gene24472:CDS |
| TCGAACAGCTGTCGGAACAT+CGG | 0.607669 | 1.1:+4591209 | None:intergenic |
| GAAGACGATGTATTTGTCGC+CGG | 0.620606 | 1.1:+4591807 | None:intergenic |
| TGGAAGCAAACTATGAAGCG+TGG | 0.621196 | 1.1:-4591263 | MS.gene24472:CDS |
| GGGAATCAAGGATGTTGAGG+AGG | 0.636535 | 1.1:+4591623 | None:intergenic |
| CTCCCTGCTCGAATCCTCCG+TGG | 0.639416 | 1.1:+4591310 | None:intergenic |
| TACCACGGAGGATTCGAGCA+GGG | 0.646227 | 1.1:-4591312 | MS.gene24472:CDS |
| TGACACTACCGGCGCAAACG+AGG | 0.647675 | 1.1:+4591701 | None:intergenic |
| CACGGACATTGAGTGCGTCG+AGG | 0.651274 | 1.1:+4591839 | None:intergenic |
| TCGGCACCGACCAATCAGCA+TGG | 0.652659 | 1.1:-4591774 | MS.gene24472:CDS |
| GCAAACGGCGAGAGACATGT+CGG | 0.653403 | 1.1:-4591067 | MS.gene24472:CDS |
| GGCGGTAATCAAAGTAATCG+GGG | 0.662111 | 1.1:+4591677 | None:intergenic |
| AAGCGTCAAGAGTTGTGTAA+CGG | 0.665000 | 1.1:+4591656 | None:intergenic |
| GTCACTCGCTGTGCTTACGT+CGG | 0.667019 | 1.1:-4591595 | MS.gene24472:CDS |
| AGCACAGCGAGTGACATGGA+GGG | 0.676899 | 1.1:+4591603 | None:intergenic |
| AATGGTGTGTTACCTTGGGG+AGG | 0.684179 | 1.1:+4591492 | None:intergenic |
| AAGCACAGCGAGTGACATGG+AGG | 0.687707 | 1.1:+4591602 | None:intergenic |
| TGTCGCCGGAACCTTCTACA+CGG | 0.698627 | 1.1:+4591821 | None:intergenic |
| GCCGTTTGCATGATACAACA+AGG | 0.702795 | 1.1:+4591081 | None:intergenic |
| AACGACGGTGAAAATTACCA+CGG | 0.704427 | 1.1:-4591327 | MS.gene24472:CDS |
| CGTCAAGAGTTGTGTAACGG+CGG | 0.709660 | 1.1:+4591659 | None:intergenic |
| AGCTAGCATTCCGATCATGG+CGG | 0.731839 | 1.1:+4591561 | None:intergenic |
| GACGGTGAAAATTACCACGG+AGG | 0.766831 | 1.1:-4591324 | MS.gene24472:CDS |
| GTTTGGAGAAGAGCTCAGGG+CGG | 0.795181 | 1.1:+4591530 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CTGTCAGAAGTTATATTTAT+AGG | + | chr1.1:4591386-4591405 | None:intergenic | 25.0% |
| !! | TTATTCAGATTTTTGAACGA+CGG | - | chr1.1:4591438-4591457 | MS.gene24472:intron | 25.0% |
| ATATATCTCTCTTCGTTTCA+AGG | - | chr1.1:4591628-4591647 | MS.gene24472:CDS | 30.0% | |
| TTAGTTATGAGTGTGATGAA+TGG | + | chr1.1:4591309-4591328 | None:intergenic | 30.0% | |
| GAAACGAAGAGAGATATATC+TGG | + | chr1.1:4591627-4591646 | None:intergenic | 35.0% | |
| TTCTCCAAACTCATCCTTAT+CGG | - | chr1.1:4591263-4591282 | MS.gene24472:CDS | 35.0% | |
| ! | ACCTTGTTGTATCATGCAAA+CGG | - | chr1.1:4591698-4591717 | MS.gene24472:CDS | 35.0% |
| ! | TTTTCAACAGTGATCTGAGA+GGG | - | chr1.1:4591655-4591674 | MS.gene24472:CDS | 35.0% |
| AAATACATCGTCTTCGCTCA+CGG | - | chr1.1:4590981-4591000 | MS.gene24472:CDS | 40.0% | |
| AACGACGGTGAAAATTACCA+CGG | - | chr1.1:4591453-4591472 | MS.gene24472:intron | 40.0% | |
| AAGCGTCAAGAGTTGTGTAA+CGG | + | chr1.1:4591127-4591146 | None:intergenic | 40.0% | |
| ACGGCGGTAATCAAAGTAAT+CGG | + | chr1.1:4591108-4591127 | None:intergenic | 40.0% | |
| AGAGAATGACTTTGTAGCTG+CGG | + | chr1.1:4591055-4591074 | None:intergenic | 40.0% | |
| ATGAATGGTGTGTTACCTTG+GGG | + | chr1.1:4591294-4591313 | None:intergenic | 40.0% | |
| GAAAATTCTCGAACAGCTGT+CGG | + | chr1.1:4591582-4591601 | None:intergenic | 40.0% | |
| GATGAATGGTGTGTTACCTT+GGG | + | chr1.1:4591295-4591314 | None:intergenic | 40.0% | |
| TGAGCAAGTTCTTTCAGCAA+TGG | - | chr1.1:4591497-4591516 | MS.gene24472:intron | 40.0% | |
| TGATGAATGGTGTGTTACCT+TGG | + | chr1.1:4591296-4591315 | None:intergenic | 40.0% | |
| TTCTTACTTGGCTCATCAAC+TGG | - | chr1.1:4591836-4591855 | MS.gene24472:CDS | 40.0% | |
| TTTGAGTGCTCCTTCTTACT+TGG | - | chr1.1:4591824-4591843 | MS.gene24472:CDS | 40.0% | |
| ! | GTTTTCAACAGTGATCTGAG+AGG | - | chr1.1:4591654-4591673 | MS.gene24472:CDS | 40.0% |
| !! | AGTTGATGAGCCAAGTAAGA+AGG | + | chr1.1:4591837-4591856 | None:intergenic | 40.0% |
| !! | TAAGAAGGAGCACTCAAATG+AGG | + | chr1.1:4591822-4591841 | None:intergenic | 40.0% |
| AACTATGAAGCGTGGGTGAA+CGG | - | chr1.1:4591525-4591544 | MS.gene24472:CDS | 45.0% | |
| AATGTCCGTGTAGAAGGTTC+CGG | - | chr1.1:4590954-4590973 | MS.gene24472:CDS | 45.0% | |
| AGTGATCTGAGAGGGATTCT+AGG | - | chr1.1:4591663-4591682 | MS.gene24472:CDS | 45.0% | |
| ATGAGTTTGGAGAAGAGCTC+AGG | + | chr1.1:4591257-4591276 | None:intergenic | 45.0% | |
| CGGCGGTAATCAAAGTAATC+GGG | + | chr1.1:4591107-4591126 | None:intergenic | 45.0% | |
| GAAGACGATGTATTTGTCGC+CGG | + | chr1.1:4590976-4590995 | None:intergenic | 45.0% | |
| GAGAATGACTTTGTAGCTGC+GGG | + | chr1.1:4591054-4591073 | None:intergenic | 45.0% | |
| GCCGTTTGCATGATACAACA+AGG | + | chr1.1:4591702-4591721 | None:intergenic | 45.0% | |
| GGAAGCAAACTATGAAGCGT+GGG | - | chr1.1:4591518-4591537 | MS.gene24472:CDS | 45.0% | |
| GGCGGTAATCAAAGTAATCG+GGG | + | chr1.1:4591106-4591125 | None:intergenic | 45.0% | |
| TGAGTTTGGAGAAGAGCTCA+GGG | + | chr1.1:4591256-4591275 | None:intergenic | 45.0% | |
| TGGAAGCAAACTATGAAGCG+TGG | - | chr1.1:4591517-4591536 | MS.gene24472:CDS | 45.0% | |
| !! | ACGTACATGAAGGAGCATCT+TGG | - | chr1.1:4591753-4591772 | MS.gene24472:CDS | 45.0% |
| !! | AGGGATTCTAGGACTGGTTA+AGG | - | chr1.1:4591674-4591693 | MS.gene24472:CDS | 45.0% |
| !! | TACATGAAGGAGCATCTTGG+CGG | - | chr1.1:4591756-4591775 | MS.gene24472:CDS | 45.0% |
| AATGGTGTGTTACCTTGGGG+AGG | + | chr1.1:4591291-4591310 | None:intergenic | 50.0% | |
| AGCTAGCATTCCGATCATGG+CGG | + | chr1.1:4591222-4591241 | None:intergenic | 50.0% | |
| CGTCAAGAGTTGTGTAACGG+CGG | + | chr1.1:4591124-4591143 | None:intergenic | 50.0% | |
| GACGGTGAAAATTACCACGG+AGG | - | chr1.1:4591456-4591475 | MS.gene24472:intron | 50.0% | |
| GAGTGACATGGAGGGAATCA+AGG | + | chr1.1:4591172-4591191 | None:intergenic | 50.0% | |
| GCACTCAATGTCCGTGTAGA+AGG | - | chr1.1:4590948-4590967 | MS.gene24472:CDS | 50.0% | |
| GGAAGCTAGCATTCCGATCA+TGG | + | chr1.1:4591225-4591244 | None:intergenic | 50.0% | |
| GGAGGGAATCAAGGATGTTG+AGG | + | chr1.1:4591163-4591182 | None:intergenic | 50.0% | |
| GGGAATCAAGGATGTTGAGG+AGG | + | chr1.1:4591160-4591179 | None:intergenic | 50.0% | |
| GTAATCGGGGTTGACACTAC+CGG | + | chr1.1:4591093-4591112 | None:intergenic | 50.0% | |
| TCGAACAGCTGTCGGAACAT+CGG | + | chr1.1:4591574-4591593 | None:intergenic | 50.0% | |
| TGTAGCTGCGGGTGAAGTAA+GGG | + | chr1.1:4591043-4591062 | None:intergenic | 50.0% | |
| TTGTAGCTGCGGGTGAAGTA+AGG | + | chr1.1:4591044-4591063 | None:intergenic | 50.0% | |
| !! | ACATGAAGGAGCATCTTGGC+GGG | - | chr1.1:4591757-4591776 | MS.gene24472:CDS | 50.0% |
| !! | GGCACCGATAAGGATGAGTT+TGG | + | chr1.1:4591270-4591289 | None:intergenic | 50.0% |
| !! | TCTGAGAGGGATTCTAGGAC+TGG | - | chr1.1:4591668-4591687 | MS.gene24472:CDS | 50.0% |
| AAGCACAGCGAGTGACATGG+AGG | + | chr1.1:4591181-4591200 | None:intergenic | 55.0% | |
| AGCACAGCGAGTGACATGGA+GGG | + | chr1.1:4591180-4591199 | None:intergenic | 55.0% | |
| ATCGTCTTCGCTCACGGCTT+CGG | - | chr1.1:4590987-4591006 | MS.gene24472:CDS | 55.0% | |
| CACTCCATCTCCGCCATGAT+CGG | - | chr1.1:4591209-4591228 | MS.gene24472:CDS | 55.0% | |
| CGTAAGCACAGCGAGTGACA+TGG | + | chr1.1:4591184-4591203 | None:intergenic | 55.0% | |
| CTCTATGACCTCGTTTGCGC+CGG | - | chr1.1:4591071-4591090 | MS.gene24472:CDS | 55.0% | |
| GACATTGAGTGCGTCGAGGA+TGG | + | chr1.1:4590940-4590959 | None:intergenic | 55.0% | |
| GCAAACGGCGAGAGACATGT+CGG | - | chr1.1:4591713-4591732 | MS.gene24472:CDS | 55.0% | |
| GCATCTTGGCGGGAAGAGTA+CGG | - | chr1.1:4591767-4591786 | MS.gene24472:CDS | 55.0% | |
| GTCACTCGCTGTGCTTACGT+CGG | - | chr1.1:4591185-4591204 | MS.gene24472:CDS | 55.0% | |
| GTTTGGAGAAGAGCTCAGGG+CGG | + | chr1.1:4591253-4591272 | None:intergenic | 55.0% | |
| TACCACGGAGGATTCGAGCA+GGG | - | chr1.1:4591468-4591487 | MS.gene24472:intron | 55.0% | |
| TGTCGCCGGAACCTTCTACA+CGG | + | chr1.1:4590962-4590981 | None:intergenic | 55.0% | |
| TTACCACGGAGGATTCGAGC+AGG | - | chr1.1:4591467-4591486 | MS.gene24472:intron | 55.0% | |
| ! | CATTCCGATCATGGCGGAGA+TGG | + | chr1.1:4591216-4591235 | None:intergenic | 55.0% |
| ! | GGTGAACGGTTTTGCTCCAC+TGG | - | chr1.1:4591539-4591558 | MS.gene24472:CDS | 55.0% |
| !! | GGTTTTGCTCCACTGGCTGT+CGG | - | chr1.1:4591546-4591565 | MS.gene24472:CDS | 55.0% |
| !! | GTTTTGCTCCACTGGCTGTC+GGG | - | chr1.1:4591547-4591566 | MS.gene24472:CDS | 55.0% |
| !! | TTTTGCTCCACTGGCTGTCG+GGG | - | chr1.1:4591548-4591567 | MS.gene24472:CDS | 55.0% |
| CACGGACATTGAGTGCGTCG+AGG | + | chr1.1:4590944-4590963 | None:intergenic | 60.0% | |
| GACGGTGGCGACGTACATGA+AGG | - | chr1.1:4591743-4591762 | MS.gene24472:CDS | 60.0% | |
| TACGGTGCAGTGGCTGGACA+CGG | - | chr1.1:4591785-4591804 | MS.gene24472:CDS | 60.0% | |
| TGACACTACCGGCGCAAACG+AGG | + | chr1.1:4591082-4591101 | None:intergenic | 60.0% | |
| ! | GAAGAGTACGGTGCAGTGGC+TGG | - | chr1.1:4591779-4591798 | MS.gene24472:CDS | 60.0% |
| ! | GCGCTGCCATGCTGATTGGT+CGG | + | chr1.1:4591015-4591034 | None:intergenic | 60.0% |
| ! | TCCTTATCGGTGCCTCCCCA+AGG | - | chr1.1:4591276-4591295 | MS.gene24472:CDS | 60.0% |
| !! | ACCTTGGGGAGGCACCGATA+AGG | + | chr1.1:4591280-4591299 | None:intergenic | 60.0% |
| !! | AGACATGTCGGTTCCGGCGA+CGG | - | chr1.1:4591725-4591744 | MS.gene24472:CDS | 60.0% |
| !! | GGCGAGAGACATGTCGGTTC+CGG | - | chr1.1:4591719-4591738 | MS.gene24472:CDS | 60.0% |
| !! | TCGGCACCGACCAATCAGCA+TGG | - | chr1.1:4591006-4591025 | MS.gene24472:CDS | 60.0% |
| ATGTACGTCGCCACCGTCGC+CGG | + | chr1.1:4591741-4591760 | None:intergenic | 65.0% | |
| CTCCCTGCTCGAATCCTCCG+TGG | + | chr1.1:4591473-4591492 | None:intergenic | 65.0% | |
| GAAGAGCTCAGGGCGGCGAA+TGG | + | chr1.1:4591246-4591265 | None:intergenic | 65.0% | |
| GCACGCGCTGCCATGCTGAT+TGG | + | chr1.1:4591019-4591038 | None:intergenic | 65.0% | |
| GTGCAGTGGCTGGACACGGA+GGG | - | chr1.1:4591789-4591808 | MS.gene24472:CDS | 65.0% | |
| TGCAGTGGCTGGACACGGAG+GGG | - | chr1.1:4591790-4591809 | MS.gene24472:CDS | 65.0% | |
| ! | GCGGGAAGAGTACGGTGCAG+TGG | - | chr1.1:4591775-4591794 | MS.gene24472:CDS | 65.0% |
| ACATCGGCCCCGACAGCCAG+TGG | + | chr1.1:4591558-4591577 | None:intergenic | 70.0% | |
| GGTGCAGTGGCTGGACACGG+AGG | - | chr1.1:4591788-4591807 | MS.gene24472:CDS | 70.0% | |
| !! | CATGTCGGTTCCGGCGACGG+TGG | - | chr1.1:4591728-4591747 | MS.gene24472:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 4590924 | 4591878 | 4590924 | ID=MS.gene24472 |
| chr1.1 | mRNA | 4590924 | 4591878 | 4590924 | ID=MS.gene24472.t1;Parent=MS.gene24472 |
| chr1.1 | exon | 4591505 | 4591878 | 4591505 | ID=MS.gene24472.t1.exon1;Parent=MS.gene24472.t1 |
| chr1.1 | CDS | 4591505 | 4591878 | 4591505 | ID=cds.MS.gene24472.t1;Parent=MS.gene24472.t1 |
| chr1.1 | exon | 4590924 | 4591356 | 4590924 | ID=MS.gene24472.t1.exon2;Parent=MS.gene24472.t1 |
| chr1.1 | CDS | 4590924 | 4591356 | 4590924 | ID=cds.MS.gene24472.t1;Parent=MS.gene24472.t1 |
| Gene Sequence |
| Protein sequence |
