Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24484.t1 | XP_003589057.2 | 95.7 | 468 | 14 | 3 | 1 | 466 | 1 | 464 | 1.40E-255 | 891.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24484.t1 | Q84WW1 | 44.6 | 451 | 203 | 12 | 16 | 459 | 8 | 418 | 2.2e-95 | 350.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24484.t1 | G7IBC4 | 95.7 | 468 | 14 | 3 | 1 | 466 | 1 | 464 | 1.0e-255 | 891.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049808 | MS.gene24484 | 0.802444 | 5.59E-49 | -1.69E-46 |
| MS.gene050237 | MS.gene24484 | 0.81002 | 1.42E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene24484 | 0.800387 | 1.48E-48 | -1.69E-46 |
| MS.gene052239 | MS.gene24484 | -0.801832 | 7.48E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene24484 | 0.805877 | 1.08E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene24484 | 0.845691 | 3.47E-59 | -1.69E-46 |
| MS.gene057598 | MS.gene24484 | 0.802062 | 6.70E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene24484 | 0.801115 | 1.05E-48 | -1.69E-46 |
| MS.gene058009 | MS.gene24484 | 0.810457 | 1.14E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene24484 | 0.807694 | 4.46E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24484.t1 | MTR_1g017940 | 96.154 | 468 | 12 | 3 | 1 | 466 | 1 | 464 | 0.0 | 916 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24484.t1 | AT3G12350 | 47.345 | 452 | 189 | 14 | 16 | 459 | 8 | 418 | 7.63e-126 | 372 |
| MS.gene24484.t1 | AT3G12350 | 49.000 | 300 | 133 | 8 | 16 | 310 | 8 | 292 | 4.95e-85 | 263 |
Find 121 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATGCATCCTCTCATTTC+TGG | 0.076622 | 1.1:-4739075 | MS.gene24484:CDS |
| CGCGGCCTTTGCAAGGTCTT+TGG | 0.200546 | 1.1:-4738296 | MS.gene24484:CDS |
| GACGTCCAATGCTACATTTC+TGG | 0.201692 | 1.1:-4737697 | MS.gene24484:CDS |
| CATCGTTTATTGCTGGTTCT+AGG | 0.206156 | 1.1:-4738788 | MS.gene24484:CDS |
| ATCCTTCCCTCAGCACTTCT+TGG | 0.210286 | 1.1:+4737444 | None:intergenic |
| GGCGGTGAGGATTGTGGTTT+TGG | 0.219719 | 1.1:-4738516 | MS.gene24484:CDS |
| TGGACAAATTGTGAATCTTT+TGG | 0.229380 | 1.1:-4738682 | MS.gene24484:CDS |
| GGATTGCTTGTCGACGGCTT+GGG | 0.277270 | 1.1:-4737761 | MS.gene24484:CDS |
| CAGTACCAGGATGGTACTTT+TGG | 0.296124 | 1.1:-4737417 | MS.gene24484:CDS |
| ATGCATAGCTGAACATCTTC+TGG | 0.298613 | 1.1:+4739089 | None:intergenic |
| CTCCTTGATCTATCGCTTCC+AGG | 0.306404 | 1.1:+4738408 | None:intergenic |
| GATTTGAATTTCAATGATAA+TGG | 0.306458 | 1.1:-4738642 | MS.gene24484:CDS |
| ATCTGATATTTGTGGGTATC+AGG | 0.322681 | 1.1:-4738745 | MS.gene24484:CDS |
| TTGTGGCTTATGATGACATT+GGG | 0.324472 | 1.1:-4737785 | MS.gene24484:CDS |
| TTGTGGGTATCAGGTGAAAA+AGG | 0.335360 | 1.1:-4738736 | MS.gene24484:CDS |
| CACAAATATCAGATTCTGAT+TGG | 0.341684 | 1.1:+4738754 | None:intergenic |
| GGGATTGCTTGTCGACGGCT+TGG | 0.341950 | 1.1:-4737762 | MS.gene24484:CDS |
| TTGGTGGAGAGGATGGGATT+GGG | 0.345801 | 1.1:-4738497 | MS.gene24484:CDS |
| TTTCCCTTTGTGATCGAAGA+TGG | 0.350083 | 1.1:-4738974 | MS.gene24484:CDS |
| TTTGGTGGAGAGGATGGGAT+TGG | 0.350376 | 1.1:-4738498 | MS.gene24484:CDS |
| TTTGGGAGGAGTTCAAGTTT+TGG | 0.353648 | 1.1:-4738546 | MS.gene24484:CDS |
| TTAGTTATTCCTGACCTTGC+TGG | 0.353685 | 1.1:-4737477 | MS.gene24484:CDS |
| GTTGGAGATTTATCAGCATT+TGG | 0.356391 | 1.1:-4738445 | MS.gene24484:CDS |
| AGCTACATGATCAATGTAGA+AGG | 0.363363 | 1.1:+4737315 | None:intergenic |
| CATGAATGGGATAATCTCAT+TGG | 0.366343 | 1.1:-4738882 | MS.gene24484:CDS |
| CTATGCATCCTCTCATTTCT+GGG | 0.371855 | 1.1:-4739074 | MS.gene24484:CDS |
| AAAGGATGGCTAGGCGGAAA+TGG | 0.377661 | 1.1:-4738365 | MS.gene24484:CDS |
| CTGAACATCTTCTGGAAAAT+CGG | 0.385346 | 1.1:+4739097 | None:intergenic |
| TCTATACTGTTCTTCATGAA+TGG | 0.393074 | 1.1:-4738896 | MS.gene24484:CDS |
| GTATTGGAGGAGAATGTGTT+TGG | 0.400412 | 1.1:-4738564 | MS.gene24484:CDS |
| TTTATCAGCATTTGGCGAAC+CGG | 0.407888 | 1.1:-4738437 | MS.gene24484:CDS |
| TTCAAATCAGCTCGACCATT+AGG | 0.409832 | 1.1:+4738657 | None:intergenic |
| TGGGGTTCATCGTTTATTGC+TGG | 0.412811 | 1.1:-4738795 | MS.gene24484:CDS |
| AAAATGGGTCTTTCTGAAGA+TGG | 0.413389 | 1.1:-4738702 | MS.gene24484:CDS |
| TGTGATTGAATCACCTTCAT+TGG | 0.420198 | 1.1:-4738829 | MS.gene24484:CDS |
| TTTCCTATGTCTGATGTTGA+AGG | 0.421658 | 1.1:-4737579 | MS.gene24484:CDS |
| TTCCCTTTGTGATCGAAGAT+GGG | 0.431132 | 1.1:-4738973 | MS.gene24484:CDS |
| GTTCCGATGATGCAAAGCTT+TGG | 0.439146 | 1.1:-4738998 | MS.gene24484:CDS |
| CTATACTGTTCTTCATGAAT+GGG | 0.446445 | 1.1:-4738895 | MS.gene24484:CDS |
| TTCTCACTGTGTGGTTGAAC+CGG | 0.446866 | 1.1:+4737612 | None:intergenic |
| TTGGCGAACCGGGTTAGTCC+TGG | 0.454630 | 1.1:-4738426 | MS.gene24484:CDS |
| TTTGTTGTTCCAGCAAGGTC+AGG | 0.457015 | 1.1:+4737468 | None:intergenic |
| CCCATAAAACAAACATTCAC+AGG | 0.458327 | 1.1:+4738600 | None:intergenic |
| ATCGTTTATTGCTGGTTCTA+GGG | 0.460830 | 1.1:-4738787 | MS.gene24484:CDS |
| ACAGCGTCGCGGCCTTTGCA+AGG | 0.463863 | 1.1:-4738303 | MS.gene24484:CDS |
| GAGTGTTCCGAATTGCTTTG+AGG | 0.466917 | 1.1:+4739022 | None:intergenic |
| GCATAAGTAGAAAACCGTTC+AGG | 0.467012 | 1.1:+4737732 | None:intergenic |
| ACAAATATCAGATTCTGATT+GGG | 0.468460 | 1.1:+4738755 | None:intergenic |
| GAAGTGCTGAGGGAAGGATT+TGG | 0.471748 | 1.1:-4737440 | MS.gene24484:CDS |
| GCATTGGACGTCCAGAAAAC+CGG | 0.482250 | 1.1:+4737708 | None:intergenic |
| AAGCCAAAGCTTTGCATCAT+CGG | 0.484101 | 1.1:+4738995 | None:intergenic |
| AGCGGAGGAAGGAGAAAGAA+AGG | 0.485086 | 1.1:-4738383 | MS.gene24484:CDS |
| GATTCTTCCTCTAGAGGAAA+GGG | 0.485616 | 1.1:+4737669 | None:intergenic |
| GATTGCTTGTCGACGGCTTG+GGG | 0.488182 | 1.1:-4737760 | MS.gene24484:CDS |
| AATAATGGCGGTGAGGATTG+TGG | 0.492669 | 1.1:-4738522 | MS.gene24484:CDS |
| GCATGTACCTCAAAGCAATT+CGG | 0.493160 | 1.1:-4739029 | MS.gene24484:CDS |
| AAGGATGGCTAGGCGGAAAT+GGG | 0.493284 | 1.1:-4738364 | MS.gene24484:CDS |
| AATCAGAATCTGATATTTGT+GGG | 0.494003 | 1.1:-4738752 | MS.gene24484:CDS |
| GATGGGATTGGGATTGATAG+TGG | 0.494324 | 1.1:-4738486 | MS.gene24484:CDS |
| TTATCAGCATTTGGCGAACC+GGG | 0.495314 | 1.1:-4738436 | MS.gene24484:CDS |
| CTTGTGGCTTATGATGACAT+TGG | 0.497541 | 1.1:-4737786 | MS.gene24484:CDS |
| GGGAAGGATTTGGCAGTACC+AGG | 0.500366 | 1.1:-4737430 | MS.gene24484:CDS |
| TATTGGAGGAGAATGTGTTT+GGG | 0.501145 | 1.1:-4738563 | MS.gene24484:CDS |
| TGCGAATGAAGCGATTTCAA+TGG | 0.504148 | 1.1:+4739049 | None:intergenic |
| GCGAATGAAGCGATTTCAAT+GGG | 0.505004 | 1.1:+4739050 | None:intergenic |
| TAAATCTCCAACATCCGATC+AGG | 0.507561 | 1.1:+4738456 | None:intergenic |
| GTCCTGGAAGCGATAGATCA+AGG | 0.517466 | 1.1:-4738410 | MS.gene24484:CDS |
| CAATCAGAATCTGATATTTG+TGG | 0.519845 | 1.1:-4738753 | MS.gene24484:CDS |
| TTCCTATGTCTGATGTTGAA+GGG | 0.520800 | 1.1:-4737578 | MS.gene24484:CDS |
| ACCCCATCTTCGATCACAAA+GGG | 0.524071 | 1.1:+4738971 | None:intergenic |
| GCCTTTGCAAGGTCTTTGGA+AGG | 0.527690 | 1.1:-4738292 | MS.gene24484:intron |
| CTAGAGGAAGAATCTCTGTA+TGG | 0.530940 | 1.1:-4737660 | MS.gene24484:CDS |
| TTGGATTTGTTGTTCCAGCA+AGG | 0.534263 | 1.1:+4737463 | None:intergenic |
| TCTGGAAAATCGGTGAATGA+AGG | 0.536265 | 1.1:+4739107 | None:intergenic |
| TGGCTTATGATGACATTGGG+GGG | 0.537170 | 1.1:-4737782 | MS.gene24484:CDS |
| GGAAGCTCCCTTTCCTCTAG+AGG | 0.537906 | 1.1:-4737676 | MS.gene24484:CDS |
| ATCAAGGAGGCAGCGGAGGA+AGG | 0.538316 | 1.1:-4738394 | MS.gene24484:CDS |
| AGCTTCCAGAAATGTAGCAT+TGG | 0.550342 | 1.1:+4737692 | None:intergenic |
| GCGATAGATCAAGGAGGCAG+CGG | 0.554402 | 1.1:-4738401 | MS.gene24484:CDS |
| AGATTCTTCCTCTAGAGGAA+AGG | 0.556546 | 1.1:+4737668 | None:intergenic |
| ACAACCTTGACAAAATGCTC+AGG | 0.558875 | 1.1:+4738339 | None:intergenic |
| CATTCAAAGAAAACCAATGA+AGG | 0.561339 | 1.1:+4738816 | None:intergenic |
| TCCTATGTCTGATGTTGAAG+GGG | 0.561612 | 1.1:-4737577 | MS.gene24484:CDS |
| CGTTCATCTACATCCTCATC+CGG | 0.561667 | 1.1:-4737631 | MS.gene24484:CDS |
| TCCCTTTGTGATCGAAGATG+GGG | 0.562967 | 1.1:-4738972 | MS.gene24484:CDS |
| CATCCACGATGCAGCCATCA+CGG | 0.563183 | 1.1:+4737346 | None:intergenic |
| CTGTGTGGTTGAACCGGATG+AGG | 0.563375 | 1.1:+4737618 | None:intergenic |
| ATATCAGATTCTGATTGGGT+TGG | 0.564374 | 1.1:+4738759 | None:intergenic |
| TGCAAAGGCCGCGACGCTGT+CGG | 0.570802 | 1.1:+4738306 | None:intergenic |
| TGGAGGAGAATGTGTTTGGG+AGG | 0.574903 | 1.1:-4738560 | MS.gene24484:CDS |
| ATAGTGGATCTCCGCCTGAT+CGG | 0.575195 | 1.1:-4738470 | MS.gene24484:CDS |
| ATCCAAGAAGTGCTGAGGGA+AGG | 0.578573 | 1.1:-4737446 | MS.gene24484:CDS |
| GGCTTGGGGATCCTCCTGAA+CGG | 0.581303 | 1.1:-4737746 | MS.gene24484:CDS |
| CAAATCCAAAAGTACCATCC+TGG | 0.582114 | 1.1:+4737412 | None:intergenic |
| GATTCAATCACAGCACTACC+AGG | 0.583468 | 1.1:+4738840 | None:intergenic |
| TATCGCTTCCAGGACTAACC+CGG | 0.590298 | 1.1:+4738418 | None:intergenic |
| GTGGCTTATGATGACATTGG+GGG | 0.592051 | 1.1:-4737783 | MS.gene24484:CDS |
| ACCCCTTCAACATCAGACAT+AGG | 0.592689 | 1.1:+4737576 | None:intergenic |
| TACAGAGATTCTTCCTCTAG+AGG | 0.592826 | 1.1:+4737663 | None:intergenic |
| ATCTCCAACATCCGATCAGG+CGG | 0.594679 | 1.1:+4738459 | None:intergenic |
| AACAAATCCAAGAAGTGCTG+AGG | 0.596441 | 1.1:-4737451 | MS.gene24484:CDS |
| AGGAGAAAGAAAGGATGGCT+AGG | 0.597024 | 1.1:-4738374 | MS.gene24484:CDS |
| TGTGGCTTATGATGACATTG+GGG | 0.601421 | 1.1:-4737784 | MS.gene24484:CDS |
| ATCTCCGCCTGATCGGATGT+TGG | 0.603433 | 1.1:-4738463 | MS.gene24484:CDS |
| GAGGAAGGAGAAAGAAAGGA+TGG | 0.607264 | 1.1:-4738379 | MS.gene24484:CDS |
| ATAGATCAAGGAGGCAGCGG+AGG | 0.612328 | 1.1:-4738398 | MS.gene24484:CDS |
| ACAAATCCAAGAAGTGCTGA+GGG | 0.620578 | 1.1:-4737450 | MS.gene24484:CDS |
| GCTACATGATCAATGTAGAA+GGG | 0.622990 | 1.1:+4737316 | None:intergenic |
| TAAGTAGAAAACCGTTCAGG+AGG | 0.623912 | 1.1:+4737735 | None:intergenic |
| CTATTTGTCAGACAATGAAG+TGG | 0.627887 | 1.1:-4737535 | MS.gene24484:CDS |
| CAATGTCATCATAAGCCACA+AGG | 0.632624 | 1.1:+4737787 | None:intergenic |
| AGGATTTGGCAGTACCAGGA+TGG | 0.636908 | 1.1:-4737426 | MS.gene24484:CDS |
| AACCCCATCTTCGATCACAA+AGG | 0.646394 | 1.1:+4738970 | None:intergenic |
| ACAAATAGAACTGCTGAATG+TGG | 0.649552 | 1.1:+4737550 | None:intergenic |
| CAATGGGACCCAGAAATGAG+AGG | 0.652580 | 1.1:+4739066 | None:intergenic |
| ATTGCTCGCCGACAGCGTCG+CGG | 0.659760 | 1.1:-4738314 | MS.gene24484:CDS |
| ACCTTCCAAAGACCTTGCAA+AGG | 0.660944 | 1.1:+4738291 | None:intergenic |
| TGCTCATGATTCTCACTGTG+TGG | 0.663304 | 1.1:+4737603 | None:intergenic |
| TGTCCGTGATGGCTGCATCG+TGG | 0.697908 | 1.1:-4737349 | MS.gene24484:CDS |
| AGAAAGAAAGGATGGCTAGG+CGG | 0.721844 | 1.1:-4738371 | MS.gene24484:CDS |
| CTGGAAGCGATAGATCAAGG+AGG | 0.765091 | 1.1:-4738407 | MS.gene24484:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTAAGATACCATAAAA+TGG | + | chr1.1:4738412-4738431 | None:intergenic | 15.0% |
| !! | ATAATTGAGCATAAATAACA+AGG | + | chr1.1:4738212-4738231 | None:intergenic | 20.0% |
| !! | GATTTGAATTTCAATGATAA+TGG | - | chr1.1:4737821-4737840 | MS.gene24484:CDS | 20.0% |
| !! | GTATCTTAATTATATCATGT+TGG | - | chr1.1:4738419-4738438 | MS.gene24484:CDS | 20.0% |
| !!! | AAAATTATAACTTGATAGCT+TGG | - | chr1.1:4738245-4738264 | MS.gene24484:intron | 20.0% |
| ! | AAAACCCAAATCAAAAAATG+GGG | - | chr1.1:4737518-4737537 | MS.gene24484:CDS | 25.0% |
| ! | AATCAGAATCTGATATTTGT+GGG | - | chr1.1:4737711-4737730 | MS.gene24484:CDS | 25.0% |
| ! | ACAAATATCAGATTCTGATT+GGG | + | chr1.1:4737711-4737730 | None:intergenic | 25.0% |
| ! | CAAAACCCAAATCAAAAAAT+GGG | - | chr1.1:4737517-4737536 | MS.gene24484:CDS | 25.0% |
| !! | TTATATCATGTTGGAGTTTT+TGG | - | chr1.1:4738428-4738447 | MS.gene24484:CDS | 25.0% |
| !!! | ATTTTGAAGATGAATGATAG+TGG | - | chr1.1:4738588-4738607 | MS.gene24484:CDS | 25.0% |
| !!! | GATCATTGATTTCCATTTTA+TGG | - | chr1.1:4738397-4738416 | MS.gene24484:CDS | 25.0% |
| !!! | TTCATTGGTTTTCTTTGAAT+GGG | - | chr1.1:4737649-4737668 | MS.gene24484:CDS | 25.0% |
| AGCAATTTGCAGTATATCAA+TGG | + | chr1.1:4738545-4738564 | None:intergenic | 30.0% | |
| ATGAAAAATATTGTCCGTGA+TGG | - | chr1.1:4739103-4739122 | MS.gene24484:CDS | 30.0% | |
| CAATCAGAATCTGATATTTG+TGG | - | chr1.1:4737710-4737729 | MS.gene24484:CDS | 30.0% | |
| CACAAATATCAGATTCTGAT+TGG | + | chr1.1:4737712-4737731 | None:intergenic | 30.0% | |
| CATTCAAAGAAAACCAATGA+AGG | + | chr1.1:4737650-4737669 | None:intergenic | 30.0% | |
| CCAAAACCCAAATCAAAAAA+TGG | - | chr1.1:4737516-4737535 | MS.gene24484:CDS | 30.0% | |
| CTATACTGTTCTTCATGAAT+GGG | - | chr1.1:4737568-4737587 | MS.gene24484:CDS | 30.0% | |
| TACTACAAAATGCAACCAAT+GGG | + | chr1.1:4738520-4738539 | None:intergenic | 30.0% | |
| TCTATACTGTTCTTCATGAA+TGG | - | chr1.1:4737567-4737586 | MS.gene24484:CDS | 30.0% | |
| TTACTACAAAATGCAACCAA+TGG | + | chr1.1:4738521-4738540 | None:intergenic | 30.0% | |
| ! | GAAAACTCATTTTGTATTGG+AGG | - | chr1.1:4737886-4737905 | MS.gene24484:intron | 30.0% |
| ! | GAAAGACCCATTTTCAAAAA+AGG | + | chr1.1:4737755-4737774 | None:intergenic | 30.0% |
| ! | TGGACAAATTGTGAATCTTT+TGG | - | chr1.1:4737781-4737800 | MS.gene24484:CDS | 30.0% |
| !!! | AAAGGTGCCTTTTTTGAAAA+TGG | - | chr1.1:4737745-4737764 | MS.gene24484:CDS | 30.0% |
| !!! | AAGGTGCCTTTTTTGAAAAT+GGG | - | chr1.1:4737746-4737765 | MS.gene24484:CDS | 30.0% |
| !!! | AGTTCAAGTTTTGGGAATAA+TGG | - | chr1.1:4737926-4737945 | MS.gene24484:intron | 30.0% |
| !!! | ATAATCTCATTGGTTTTTGG+AGG | - | chr1.1:4737591-4737610 | MS.gene24484:CDS | 30.0% |
| !!! | CCATTTTTTGATTTGGGTTT+TGG | + | chr1.1:4737519-4737538 | None:intergenic | 30.0% |
| !!! | CCTGTGAATGTTTGTTTTAT+GGG | - | chr1.1:4737863-4737882 | MS.gene24484:intron | 30.0% |
| !!! | CTGTGAATGTTTGTTTTATG+GGG | - | chr1.1:4737864-4737883 | MS.gene24484:intron | 30.0% |
| !!! | CTTCATTGGTTTTCTTTGAA+TGG | - | chr1.1:4737648-4737667 | MS.gene24484:CDS | 30.0% |
| !!! | TCATTGGTTTTCTTTGAATG+GGG | - | chr1.1:4737650-4737669 | MS.gene24484:CDS | 30.0% |
| !!! | TCCTGTGAATGTTTGTTTTA+TGG | - | chr1.1:4737862-4737881 | MS.gene24484:intron | 30.0% |
| !!! | TTCACCCCATTTTTTGATTT+GGG | + | chr1.1:4737525-4737544 | None:intergenic | 30.0% |
| ACAAATAGAACTGCTGAATG+TGG | + | chr1.1:4738916-4738935 | None:intergenic | 35.0% | |
| ACTACAAAATGCAACCAATG+GGG | + | chr1.1:4738519-4738538 | None:intergenic | 35.0% | |
| ATATCAGATTCTGATTGGGT+TGG | + | chr1.1:4737707-4737726 | None:intergenic | 35.0% | |
| ATCTGATATTTGTGGGTATC+AGG | - | chr1.1:4737718-4737737 | MS.gene24484:CDS | 35.0% | |
| ATTGAAACTGTCAATGATGC+AGG | - | chr1.1:4738622-4738641 | MS.gene24484:CDS | 35.0% | |
| CAAATCAAAAAATGGGGTGA+AGG | - | chr1.1:4737524-4737543 | MS.gene24484:CDS | 35.0% | |
| CATGAATGGGATAATCTCAT+TGG | - | chr1.1:4737581-4737600 | MS.gene24484:CDS | 35.0% | |
| CCCATAAAACAAACATTCAC+AGG | + | chr1.1:4737866-4737885 | None:intergenic | 35.0% | |
| CTATTTGTCAGACAATGAAG+TGG | - | chr1.1:4738928-4738947 | MS.gene24484:CDS | 35.0% | |
| GTTGGAGATTTATCAGCATT+TGG | - | chr1.1:4738018-4738037 | MS.gene24484:intron | 35.0% | |
| TATTGGAGGAGAATGTGTTT+GGG | - | chr1.1:4737900-4737919 | MS.gene24484:intron | 35.0% | |
| TGTGATTGAATCACCTTCAT+TGG | - | chr1.1:4737634-4737653 | MS.gene24484:CDS | 35.0% | |
| TTCCTATGTCTGATGTTGAA+GGG | - | chr1.1:4738885-4738904 | MS.gene24484:CDS | 35.0% | |
| TTGAAACTGTCAATGATGCA+GGG | - | chr1.1:4738623-4738642 | MS.gene24484:CDS | 35.0% | |
| TTGTGGCTTATGATGACATT+GGG | - | chr1.1:4738678-4738697 | MS.gene24484:CDS | 35.0% | |
| TTTCCTATGTCTGATGTTGA+AGG | - | chr1.1:4738884-4738903 | MS.gene24484:CDS | 35.0% | |
| ! | AAAATGGGTCTTTCTGAAGA+TGG | - | chr1.1:4737761-4737780 | MS.gene24484:CDS | 35.0% |
| ! | CTGAACATCTTCTGGAAAAT+CGG | + | chr1.1:4737369-4737388 | None:intergenic | 35.0% |
| ! | GAGTTTAGCATTTTACCTTG+TGG | - | chr1.1:4738661-4738680 | MS.gene24484:CDS | 35.0% |
| ! | GGGGAAAACTCATTTTGTAT+TGG | - | chr1.1:4737883-4737902 | MS.gene24484:intron | 35.0% |
| ! | GTGAATCTTTTGGATCCTAA+TGG | - | chr1.1:4737791-4737810 | MS.gene24484:CDS | 35.0% |
| !! | ATCGTTTATTGCTGGTTCTA+GGG | - | chr1.1:4737676-4737695 | MS.gene24484:CDS | 35.0% |
| !! | CTTTTGGATTTGGTTTCGTT+CGG | - | chr1.1:4739062-4739081 | MS.gene24484:CDS | 35.0% |
| !! | TTTTGGATTTGGTTTCGTTC+GGG | - | chr1.1:4739063-4739082 | MS.gene24484:CDS | 35.0% |
| !!! | CTTCACCCCATTTTTTGATT+TGG | + | chr1.1:4737526-4737545 | None:intergenic | 35.0% |
| !!! | GGGATAATCTCATTGGTTTT+TGG | - | chr1.1:4737588-4737607 | MS.gene24484:CDS | 35.0% |
| !!! | TCAAGTTTTGGGAATAATGG+CGG | - | chr1.1:4737929-4737948 | MS.gene24484:intron | 35.0% |
| AAGCCAAAGCTTTGCATCAT+CGG | + | chr1.1:4737471-4737490 | None:intergenic | 40.0% | |
| ACAACCTTGACAAAATGCTC+AGG | + | chr1.1:4738127-4738146 | None:intergenic | 40.0% | |
| AGCTTCCAGAAATGTAGCAT+TGG | + | chr1.1:4738774-4738793 | None:intergenic | 40.0% | |
| ATGCATAGCTGAACATCTTC+TGG | + | chr1.1:4737377-4737396 | None:intergenic | 40.0% | |
| CAATGTCATCATAAGCCACA+AGG | + | chr1.1:4738679-4738698 | None:intergenic | 40.0% | |
| CTACAAAATGCAACCAATGG+GGG | + | chr1.1:4738518-4738537 | None:intergenic | 40.0% | |
| CTAGAGGAAGAATCTCTGTA+TGG | - | chr1.1:4738803-4738822 | MS.gene24484:CDS | 40.0% | |
| CTATGCATCCTCTCATTTCT+GGG | - | chr1.1:4737389-4737408 | MS.gene24484:CDS | 40.0% | |
| CTTGTGGCTTATGATGACAT+TGG | - | chr1.1:4738677-4738696 | MS.gene24484:CDS | 40.0% | |
| GCATAAGTAGAAAACCGTTC+AGG | + | chr1.1:4738734-4738753 | None:intergenic | 40.0% | |
| GCATGTACCTCAAAGCAATT+CGG | - | chr1.1:4737434-4737453 | MS.gene24484:CDS | 40.0% | |
| GCGAATGAAGCGATTTCAAT+GGG | + | chr1.1:4737416-4737435 | None:intergenic | 40.0% | |
| GTATTGGAGGAGAATGTGTT+TGG | - | chr1.1:4737899-4737918 | MS.gene24484:intron | 40.0% | |
| TAAATCTCCAACATCCGATC+AGG | + | chr1.1:4738010-4738029 | None:intergenic | 40.0% | |
| TAAGTAGAAAACCGTTCAGG+AGG | + | chr1.1:4738731-4738750 | None:intergenic | 40.0% | |
| TACAGAGATTCTTCCTCTAG+AGG | + | chr1.1:4738803-4738822 | None:intergenic | 40.0% | |
| TCCTATGTCTGATGTTGAAG+GGG | - | chr1.1:4738886-4738905 | MS.gene24484:CDS | 40.0% | |
| TCTGGAAAATCGGTGAATGA+AGG | + | chr1.1:4737359-4737378 | None:intergenic | 40.0% | |
| TGCGAATGAAGCGATTTCAA+TGG | + | chr1.1:4737417-4737436 | None:intergenic | 40.0% | |
| TGTGGCTTATGATGACATTG+GGG | - | chr1.1:4738679-4738698 | MS.gene24484:CDS | 40.0% | |
| TTAGTTATTCCTGACCTTGC+TGG | - | chr1.1:4738986-4739005 | MS.gene24484:CDS | 40.0% | |
| TTCAAATCAGCTCGACCATT+AGG | + | chr1.1:4737809-4737828 | None:intergenic | 40.0% | |
| TTCCCTTTGTGATCGAAGAT+GGG | - | chr1.1:4737490-4737509 | MS.gene24484:CDS | 40.0% | |
| TTGTGGGTATCAGGTGAAAA+AGG | - | chr1.1:4737727-4737746 | MS.gene24484:CDS | 40.0% | |
| TTTATCAGCATTTGGCGAAC+CGG | - | chr1.1:4738026-4738045 | MS.gene24484:intron | 40.0% | |
| TTTCCCTTTGTGATCGAAGA+TGG | - | chr1.1:4737489-4737508 | MS.gene24484:CDS | 40.0% | |
| ! | ACGGTTTTCTACTTATGCTC+CGG | - | chr1.1:4738736-4738755 | MS.gene24484:CDS | 40.0% |
| ! | AGATTCTTCCTCTAGAGGAA+AGG | + | chr1.1:4738798-4738817 | None:intergenic | 40.0% |
| ! | CAGGATGGTACTTTTGGATT+TGG | - | chr1.1:4739052-4739071 | MS.gene24484:CDS | 40.0% |
| ! | GATTCTTCCTCTAGAGGAAA+GGG | + | chr1.1:4738797-4738816 | None:intergenic | 40.0% |
| !! | AACAAATCCAAGAAGTGCTG+AGG | - | chr1.1:4739012-4739031 | MS.gene24484:CDS | 40.0% |
| !! | ACAAATCCAAGAAGTGCTGA+GGG | - | chr1.1:4739013-4739032 | MS.gene24484:CDS | 40.0% |
| !! | CAAATCCAAAAGTACCATCC+TGG | + | chr1.1:4739054-4739073 | None:intergenic | 40.0% |
| !! | CATCGTTTATTGCTGGTTCT+AGG | - | chr1.1:4737675-4737694 | MS.gene24484:CDS | 40.0% |
| !! | TAACTTGATAGCTTGGTGCT+TGG | - | chr1.1:4738252-4738271 | MS.gene24484:intron | 40.0% |
| !! | TTGGATTTGTTGTTCCAGCA+AGG | + | chr1.1:4739003-4739022 | None:intergenic | 40.0% |
| !! | TTGGGAGGAGTTCAAGTTTT+GGG | - | chr1.1:4737918-4737937 | MS.gene24484:intron | 40.0% |
| !! | TTTGGGAGGAGTTCAAGTTT+TGG | - | chr1.1:4737917-4737936 | MS.gene24484:intron | 40.0% |
| !!! | ATTGGTTTTTGGAGGAGAAG+TGG | - | chr1.1:4737599-4737618 | MS.gene24484:CDS | 40.0% |
| AACCCCATCTTCGATCACAA+AGG | + | chr1.1:4737496-4737515 | None:intergenic | 45.0% | |
| AATAATGGCGGTGAGGATTG+TGG | - | chr1.1:4737941-4737960 | MS.gene24484:intron | 45.0% | |
| ACCCCATCTTCGATCACAAA+GGG | + | chr1.1:4737495-4737514 | None:intergenic | 45.0% | |
| ACCCCTTCAACATCAGACAT+AGG | + | chr1.1:4738890-4738909 | None:intergenic | 45.0% | |
| ACCTTCCAAAGACCTTGCAA+AGG | + | chr1.1:4738175-4738194 | None:intergenic | 45.0% | |
| AGAAAGAAAGGATGGCTAGG+CGG | - | chr1.1:4738092-4738111 | MS.gene24484:intron | 45.0% | |
| AGGAGAAAGAAAGGATGGCT+AGG | - | chr1.1:4738089-4738108 | MS.gene24484:intron | 45.0% | |
| CGTTCATCTACATCCTCATC+CGG | - | chr1.1:4738832-4738851 | MS.gene24484:CDS | 45.0% | |
| GACGTCCAATGCTACATTTC+TGG | - | chr1.1:4738766-4738785 | MS.gene24484:CDS | 45.0% | |
| GAGGAAGGAGAAAGAAAGGA+TGG | - | chr1.1:4738084-4738103 | MS.gene24484:intron | 45.0% | |
| GAGTGTTCCGAATTGCTTTG+AGG | + | chr1.1:4737444-4737463 | None:intergenic | 45.0% | |
| GATGGGATTGGGATTGATAG+TGG | - | chr1.1:4737977-4737996 | MS.gene24484:intron | 45.0% | |
| GATTCAATCACAGCACTACC+AGG | + | chr1.1:4737626-4737645 | None:intergenic | 45.0% | |
| GCTATGCATCCTCTCATTTC+TGG | - | chr1.1:4737388-4737407 | MS.gene24484:CDS | 45.0% | |
| GTGGCTTATGATGACATTGG+GGG | - | chr1.1:4738680-4738699 | MS.gene24484:CDS | 45.0% | |
| GTTCCGATGATGCAAAGCTT+TGG | - | chr1.1:4737465-4737484 | MS.gene24484:CDS | 45.0% | |
| TCCCTTTGTGATCGAAGATG+GGG | - | chr1.1:4737491-4737510 | MS.gene24484:CDS | 45.0% | |
| TGCTCATGATTCTCACTGTG+TGG | + | chr1.1:4738863-4738882 | None:intergenic | 45.0% | |
| TGGCTTATGATGACATTGGG+GGG | - | chr1.1:4738681-4738700 | MS.gene24484:CDS | 45.0% | |
| TGGGGTTCATCGTTTATTGC+TGG | - | chr1.1:4737668-4737687 | MS.gene24484:CDS | 45.0% | |
| TTATCAGCATTTGGCGAACC+GGG | - | chr1.1:4738027-4738046 | MS.gene24484:intron | 45.0% | |
| TTCTCACTGTGTGGTTGAAC+CGG | + | chr1.1:4738854-4738873 | None:intergenic | 45.0% | |
| ! | CAGTACCAGGATGGTACTTT+TGG | - | chr1.1:4739046-4739065 | MS.gene24484:CDS | 45.0% |
| ! | CTACTTATGCTCCGGTTTTC+TGG | - | chr1.1:4738744-4738763 | MS.gene24484:CDS | 45.0% |
| !! | GATGAATGATAGTGGAGCTC+TGG | - | chr1.1:4738596-4738615 | MS.gene24484:CDS | 45.0% |
| !! | TTTGTTGTTCCAGCAAGGTC+AGG | + | chr1.1:4738998-4739017 | None:intergenic | 45.0% |
| !! | TTTTGGGAATAATGGCGGTG+AGG | - | chr1.1:4737934-4737953 | MS.gene24484:intron | 45.0% |
| AAAGGATGGCTAGGCGGAAA+TGG | - | chr1.1:4738098-4738117 | MS.gene24484:intron | 50.0% | |
| AAATGCAACCAATGGGGGTG+TGG | + | chr1.1:4738513-4738532 | None:intergenic | 50.0% | |
| AAGGATGGCTAGGCGGAAAT+GGG | - | chr1.1:4738099-4738118 | MS.gene24484:intron | 50.0% | |
| ACTCCGACTAAAGCGTGCAT+CGG | + | chr1.1:4738459-4738478 | None:intergenic | 50.0% | |
| AGCGGAGGAAGGAGAAAGAA+AGG | - | chr1.1:4738080-4738099 | MS.gene24484:intron | 50.0% | |
| AGGATTTGGCAGTACCAGGA+TGG | - | chr1.1:4739037-4739056 | MS.gene24484:CDS | 50.0% | |
| ATCCTTCCCTCAGCACTTCT+TGG | + | chr1.1:4739022-4739041 | None:intergenic | 50.0% | |
| ATCTCCAACATCCGATCAGG+CGG | + | chr1.1:4738007-4738026 | None:intergenic | 50.0% | |
| ATGCCGATGCACGCTTTAGT+CGG | - | chr1.1:4738453-4738472 | MS.gene24484:CDS | 50.0% | |
| CAATGGGACCCAGAAATGAG+AGG | + | chr1.1:4737400-4737419 | None:intergenic | 50.0% | |
| CTCCTTGATCTATCGCTTCC+AGG | + | chr1.1:4738058-4738077 | None:intergenic | 50.0% | |
| CTGGAAGCGATAGATCAAGG+AGG | - | chr1.1:4738056-4738075 | MS.gene24484:intron | 50.0% | |
| GCATTGGACGTCCAGAAAAC+CGG | + | chr1.1:4738758-4738777 | None:intergenic | 50.0% | |
| GCCTTTGCAAGGTCTTTGGA+AGG | - | chr1.1:4738171-4738190 | MS.gene24484:intron | 50.0% | |
| GTCCTGGAAGCGATAGATCA+AGG | - | chr1.1:4738053-4738072 | MS.gene24484:intron | 50.0% | |
| TATCGCTTCCAGGACTAACC+CGG | + | chr1.1:4738048-4738067 | None:intergenic | 50.0% | |
| TGGAGGAGAATGTGTTTGGG+AGG | - | chr1.1:4737903-4737922 | MS.gene24484:intron | 50.0% | |
| TTGGTGGAGAGGATGGGATT+GGG | - | chr1.1:4737966-4737985 | MS.gene24484:intron | 50.0% | |
| TTTGGTGGAGAGGATGGGAT+TGG | - | chr1.1:4737965-4737984 | MS.gene24484:intron | 50.0% | |
| ! | GGAGCCTGAGCATTTTGTCA+AGG | - | chr1.1:4738120-4738139 | MS.gene24484:intron | 50.0% |
| !! | ATAGTGGATCTCCGCCTGAT+CGG | - | chr1.1:4737993-4738012 | MS.gene24484:intron | 50.0% |
| !! | ATCCAAGAAGTGCTGAGGGA+AGG | - | chr1.1:4739017-4739036 | MS.gene24484:CDS | 50.0% |
| !! | GAAGTGCTGAGGGAAGGATT+TGG | - | chr1.1:4739023-4739042 | MS.gene24484:CDS | 50.0% |
| !! | TTTTGGAGGAGAAGTGGTCC+TGG | - | chr1.1:4737605-4737624 | MS.gene24484:CDS | 50.0% |
| !!! | GGATTGTGGTTTTGGTGGAG+AGG | - | chr1.1:4737955-4737974 | MS.gene24484:intron | 50.0% |
| !!! | GGTGAGGATTGTGGTTTTGG+TGG | - | chr1.1:4737950-4737969 | MS.gene24484:intron | 50.0% |
| !!! | GTGGTTTTGGTGGAGAGGAT+GGG | - | chr1.1:4737960-4737979 | MS.gene24484:intron | 50.0% |
| !!! | TGTGGTTTTGGTGGAGAGGA+TGG | - | chr1.1:4737959-4737978 | MS.gene24484:intron | 50.0% |
| ATAGATCAAGGAGGCAGCGG+AGG | - | chr1.1:4738065-4738084 | MS.gene24484:intron | 55.0% | |
| ATCTCCGCCTGATCGGATGT+TGG | - | chr1.1:4738000-4738019 | MS.gene24484:intron | 55.0% | |
| ATCTGTCTCCACACCCCCAT+TGG | - | chr1.1:4738502-4738521 | MS.gene24484:CDS | 55.0% | |
| CATCCACGATGCAGCCATCA+CGG | + | chr1.1:4739120-4739139 | None:intergenic | 55.0% | |
| CTGTGTGGTTGAACCGGATG+AGG | + | chr1.1:4738848-4738867 | None:intergenic | 55.0% | |
| GATTGCTTGTCGACGGCTTG+GGG | - | chr1.1:4738703-4738722 | MS.gene24484:CDS | 55.0% | |
| GCGATAGATCAAGGAGGCAG+CGG | - | chr1.1:4738062-4738081 | MS.gene24484:intron | 55.0% | |
| GGAAGCTCCCTTTCCTCTAG+AGG | - | chr1.1:4738787-4738806 | MS.gene24484:CDS | 55.0% | |
| GGATTGCTTGTCGACGGCTT+GGG | - | chr1.1:4738702-4738721 | MS.gene24484:CDS | 55.0% | |
| GGGAAGGATTTGGCAGTACC+AGG | - | chr1.1:4739033-4739052 | MS.gene24484:CDS | 55.0% | |
| TTGGGGGGATTGCTTGTCGA+CGG | - | chr1.1:4738696-4738715 | MS.gene24484:CDS | 55.0% | |
| ! | GGCGGTGAGGATTGTGGTTT+TGG | - | chr1.1:4737947-4737966 | MS.gene24484:intron | 55.0% |
| ATCAAGGAGGCAGCGGAGGA+AGG | - | chr1.1:4738069-4738088 | MS.gene24484:intron | 60.0% | |
| CGCGGCCTTTGCAAGGTCTT+TGG | - | chr1.1:4738167-4738186 | MS.gene24484:intron | 60.0% | |
| GGCTTGGGGATCCTCCTGAA+CGG | - | chr1.1:4738717-4738736 | MS.gene24484:CDS | 60.0% | |
| GGGATTGCTTGTCGACGGCT+TGG | - | chr1.1:4738701-4738720 | MS.gene24484:CDS | 60.0% | |
| TGTCCGTGATGGCTGCATCG+TGG | - | chr1.1:4739114-4739133 | MS.gene24484:CDS | 60.0% | |
| !! | TTGGCGAACCGGGTTAGTCC+TGG | - | chr1.1:4738037-4738056 | MS.gene24484:intron | 60.0% |
| ACAGCGTCGCGGCCTTTGCA+AGG | - | chr1.1:4738160-4738179 | MS.gene24484:intron | 65.0% | |
| ATTGCTCGCCGACAGCGTCG+CGG | - | chr1.1:4738149-4738168 | MS.gene24484:intron | 65.0% | |
| TGCAAAGGCCGCGACGCTGT+CGG | + | chr1.1:4738160-4738179 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 4737317 | 4739168 | 4737317 | ID=MS.gene24484 |
| chr1.1 | mRNA | 4737317 | 4739168 | 4737317 | ID=MS.gene24484.t1;Parent=MS.gene24484 |
| chr1.1 | exon | 4738293 | 4739168 | 4738293 | ID=MS.gene24484.t1.exon1;Parent=MS.gene24484.t1 |
| chr1.1 | CDS | 4738293 | 4739168 | 4738293 | ID=cds.MS.gene24484.t1;Parent=MS.gene24484.t1 |
| chr1.1 | exon | 4737317 | 4737841 | 4737317 | ID=MS.gene24484.t1.exon2;Parent=MS.gene24484.t1 |
| chr1.1 | CDS | 4737317 | 4737841 | 4737317 | ID=cds.MS.gene24484.t1;Parent=MS.gene24484.t1 |
| Gene Sequence |
| Protein sequence |
