AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24604


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24604.t1 MTR_1g064360 98.757 563 7 0 1 563 1 563 0.0 1145
MS.gene24604.t1 MTR_2g018750 71.138 589 135 7 1 562 1 581 0.0 837
MS.gene24604.t1 MTR_1g094850 52.931 580 237 7 1 553 1 571 0.0 612
MS.gene24604.t1 MTR_2g048390 51.209 455 192 6 1 428 1 452 3.14e-159 462
MS.gene24604.t1 MTR_8g078900 38.907 622 278 14 17 550 11 618 9.12e-138 415
MS.gene24604.t1 MTR_2g084595 36.503 589 325 9 13 560 10 590 2.11e-130 395
MS.gene24604.t1 MTR_8g078900 38.602 601 267 14 38 550 2 588 1.60e-128 390
MS.gene24604.t1 MTR_8g078900 39.890 544 249 11 74 550 46 578 6.31e-125 380
MS.gene24604.t1 MTR_2g009340 37.803 537 275 9 5 486 23 555 4.76e-120 370
MS.gene24604.t1 MTR_4g093850 37.218 532 278 8 5 486 23 548 2.79e-117 362
MS.gene24604.t1 MTR_5g032780 38.815 523 280 7 1 483 1 523 1.85e-113 351
MS.gene24604.t1 MTR_7g073980 37.708 541 295 13 26 547 33 550 4.20e-110 343
MS.gene24604.t1 MTR_4g022330 37.058 537 301 10 28 545 36 554 7.41e-110 341
MS.gene24604.t1 MTR_8g090220 33.679 579 321 13 15 552 41 597 1.77e-106 333
MS.gene24604.t1 MTR_1g106430 35.501 569 312 14 1 537 1 546 2.20e-106 332
MS.gene24604.t1 MTR_5g016060 34.615 546 306 10 20 543 34 550 1.00e-105 331
MS.gene24604.t1 MTR_3g062540 38.495 465 265 8 20 482 18 463 5.56e-105 327
MS.gene24604.t1 MTR_5g015790 39.139 511 251 11 1 479 1 483 1.14e-104 328
MS.gene24604.t1 MTR_8g090220 36.531 490 269 10 15 480 41 512 5.97e-104 323
MS.gene24604.t1 MTR_1g088885 35.420 559 310 11 15 545 26 561 5.29e-103 323
MS.gene24604.t1 MTR_1g014070 38.264 507 264 12 1 478 1 487 5.71e-103 323
MS.gene24604.t1 MTR_8g078900 39.309 463 220 10 17 428 11 463 9.92e-101 313
MS.gene24604.t1 MTR_7g108290 35.472 561 310 13 15 545 26 564 2.13e-98 313
MS.gene24604.t1 MTR_2g084595 36.569 443 247 7 13 428 10 445 2.23e-96 301
MS.gene24604.t1 MTR_3g062540 38.041 439 251 8 46 482 2 421 1.21e-95 301
MS.gene24604.t1 MTR_5g075640 35.699 479 285 8 15 486 15 477 3.03e-94 300
MS.gene24604.t1 MTR_4g095430 34.433 485 277 7 20 484 7 470 3.31e-93 297
MS.gene24604.t1 MTR_8g069330 35.912 543 292 12 1 513 1 517 7.69e-93 296
MS.gene24604.t1 MTR_4g093850 34.810 474 253 8 5 428 23 490 7.25e-89 284
MS.gene24604.t1 MTR_8g078900 40.103 389 188 7 74 428 46 423 5.38e-88 278
MS.gene24604.t1 MTR_4g134210 33.065 496 290 10 1 477 1 473 8.86e-87 281
MS.gene24604.t1 MTR_5g075640 35.491 448 267 7 46 486 2 434 3.92e-85 275
MS.gene24604.t1 MTR_1g082690 30.833 480 296 9 10 486 42 488 1.59e-80 263
MS.gene24604.t1 MTR_5g016060 33.117 462 260 9 104 543 2 436 2.87e-76 251
MS.gene24604.t1 MTR_2g027410 31.365 491 295 9 1 477 1 463 3.82e-75 249
MS.gene24604.t1 MTR_4g011530 31.937 382 228 6 186 557 42 401 9.40e-62 210
MS.gene24604.t1 MTR_2g102730 32.884 371 202 7 190 545 24 362 1.07e-59 204
MS.gene24604.t1 MTR_2g027410 30.935 417 248 8 75 477 1 391 2.61e-58 202
MS.gene24604.t1 MTR_4g045767 28.164 561 311 18 35 547 14 530 1.13e-56 199
MS.gene24604.t1 MTR_1g035720 25.394 571 319 14 29 544 6 524 1.53e-46 171
MS.gene24604.t1 MTR_4g074190 27.745 501 284 13 27 483 4 470 3.32e-45 168
MS.gene24604.t1 MTR_4g074190 28.509 456 250 11 70 483 3 424 4.37e-44 164
MS.gene24604.t1 MTR_4g074190 26.339 448 252 13 27 430 4 417 7.95e-34 134
MS.gene24604.t1 MTR_2g048375 51.145 131 51 3 445 562 1 131 7.13e-32 121
MS.gene24604.t1 MTR_1g105870 34.973 183 112 2 34 209 39 221 1.55e-30 120
MS.gene24604.t1 MTR_2g010890 25.780 481 273 15 94 543 1 428 6.25e-24 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24604.t1 AT5G03250 59.022 593 198 11 1 562 1 579 0.0 707
MS.gene24604.t1 AT5G13600 52.462 589 236 10 1 563 1 571 0.0 587
MS.gene24604.t1 AT1G30440 49.251 601 245 9 1 549 1 593 0.0 576
MS.gene24604.t1 AT5G03250 57.380 481 160 11 113 562 1 467 0.0 543
MS.gene24604.t1 AT3G44820 38.345 592 313 10 13 556 10 597 3.12e-137 413
MS.gene24604.t1 AT5G66560 37.323 635 271 11 17 545 10 623 9.90e-128 389
MS.gene24604.t1 AT5G66560 36.808 614 261 11 38 545 2 594 1.30e-118 365
MS.gene24604.t1 AT3G50840 38.919 555 286 10 23 552 13 539 1.69e-117 359
MS.gene24604.t1 AT5G66560 39.444 540 242 10 70 545 66 584 3.88e-117 360
MS.gene24604.t1 AT5G48800 36.991 565 286 11 28 555 43 574 8.48e-110 341
MS.gene24604.t1 AT5G67385 36.025 483 273 6 20 486 19 481 3.84e-106 331
MS.gene24604.t1 AT3G50840 38.403 526 270 10 54 552 5 503 4.82e-106 329
MS.gene24604.t1 AT3G50840 38.403 526 270 10 54 552 5 503 4.82e-106 329
MS.gene24604.t1 AT3G08570 35.490 541 309 10 26 547 34 553 1.17e-104 328
MS.gene24604.t1 AT2G47860 36.000 550 303 12 23 545 34 561 1.25e-104 328
MS.gene24604.t1 AT1G03010 36.462 554 304 12 24 545 7 544 5.72e-104 326
MS.gene24604.t1 AT1G03010 36.234 563 310 13 15 545 26 571 9.26e-104 326
MS.gene24604.t1 AT1G03010 36.219 566 308 14 16 545 22 570 1.50e-103 325
MS.gene24604.t1 AT1G67900 37.452 518 276 9 1 479 1 509 2.14e-100 317
MS.gene24604.t1 AT1G67900 37.452 518 276 9 1 479 1 509 2.14e-100 317
MS.gene24604.t1 AT1G67900 37.452 518 276 9 1 479 1 509 2.14e-100 317
MS.gene24604.t1 AT1G67900 37.452 518 276 9 1 479 1 509 2.14e-100 317
MS.gene24604.t1 AT1G67900 37.452 518 276 9 1 479 1 509 2.14e-100 317
MS.gene24604.t1 AT1G67900 37.452 518 276 9 1 479 1 509 2.14e-100 317
MS.gene24604.t1 AT2G30520 36.364 484 289 8 4 485 9 475 6.05e-100 315
MS.gene24604.t1 AT3G08660 34.124 548 297 15 26 549 34 541 1.34e-99 313
MS.gene24604.t1 AT2G47860 34.555 573 303 13 23 545 34 584 1.59e-99 316
MS.gene24604.t1 AT4G37590 37.187 519 246 14 1 486 1 472 2.56e-98 310
MS.gene24604.t1 AT2G14820 36.576 514 279 13 1 486 1 495 2.18e-96 307
MS.gene24604.t1 AT2G14820 36.576 514 279 13 1 486 1 495 2.18e-96 307
MS.gene24604.t1 AT5G10250 32.513 569 322 13 13 549 37 575 3.24e-96 306
MS.gene24604.t1 AT4G31820 35.742 512 260 12 1 483 1 472 6.85e-94 298
MS.gene24604.t1 AT5G67440 36.346 509 273 13 1 485 1 482 5.09e-93 296
MS.gene24604.t1 AT5G67440 36.346 509 273 13 1 485 1 482 5.09e-93 296
MS.gene24604.t1 AT5G67385 34.649 456 262 6 47 486 1 436 2.72e-92 294
MS.gene24604.t1 AT5G67385 34.649 456 262 6 47 486 1 436 2.72e-92 294
MS.gene24604.t1 AT5G67385 34.649 456 262 6 47 486 1 436 2.72e-92 294
MS.gene24604.t1 AT5G67385 34.649 456 262 6 47 486 1 436 2.72e-92 294
MS.gene24604.t1 AT5G10250 32.379 559 321 13 13 549 37 560 1.64e-91 293
MS.gene24604.t1 AT2G23050 35.827 508 255 12 1 487 1 458 2.00e-91 289
MS.gene24604.t1 AT5G66560 36.253 491 213 9 17 428 10 479 1.85e-90 286
MS.gene24604.t1 AT2G30520 36.199 442 264 7 46 485 2 427 1.57e-89 286
MS.gene24604.t1 AT2G30520 36.199 442 264 7 46 485 2 427 1.57e-89 286
MS.gene24604.t1 AT3G08660 33.858 508 275 14 66 549 11 481 3.72e-89 285
MS.gene24604.t1 AT3G26490 33.942 548 289 12 1 500 1 523 4.48e-88 284
MS.gene24604.t1 AT3G26490 33.942 548 289 12 1 500 1 523 4.48e-88 284
MS.gene24604.t1 AT3G26490 33.942 548 289 12 1 500 1 523 4.48e-88 284
MS.gene24604.t1 AT5G67440 35.684 468 251 12 41 485 5 445 3.08e-82 267
MS.gene24604.t1 AT5G47800 30.629 493 307 9 1 477 1 474 1.28e-78 258
MS.gene24604.t1 AT5G47800 30.629 493 307 9 1 477 1 474 1.28e-78 258
MS.gene24604.t1 AT5G47800 30.629 493 307 9 1 477 1 474 1.28e-78 258
MS.gene24604.t1 AT3G49970 34.186 430 237 9 38 463 6 393 9.63e-78 254
MS.gene24604.t1 AT3G49970 34.186 430 237 9 38 463 6 393 9.63e-78 254
MS.gene24604.t1 AT5G47800 30.629 493 307 9 1 477 114 587 2.74e-77 257
MS.gene24604.t1 AT2G47860 35.431 429 235 10 23 428 34 443 2.65e-76 249
MS.gene24604.t1 AT4G31820 34.793 434 217 10 74 479 20 415 6.28e-75 247
MS.gene24604.t1 AT2G47860 33.913 460 260 11 113 545 1 443 1.13e-72 241
MS.gene24604.t1 AT2G47860 33.913 460 260 11 113 545 1 443 1.13e-72 241
MS.gene24604.t1 AT3G08660 33.489 427 233 12 24 435 32 422 2.90e-71 235
MS.gene24604.t1 AT2G47860 33.628 452 235 11 23 428 34 466 3.16e-71 236
MS.gene24604.t1 AT3G26490 32.265 499 262 13 1 443 1 479 1.73e-65 222
MS.gene24604.t1 AT1G52770 33.247 388 224 7 190 561 28 396 5.00e-64 216
MS.gene24604.t1 AT3G15570 32.908 392 220 8 190 561 29 397 8.64e-59 202
MS.gene24604.t1 AT5G64330 43.154 241 124 1 259 486 313 553 1.22e-56 200
MS.gene24604.t1 AT5G64330 36.638 232 107 4 39 232 6 235 1.02e-39 153
MS.gene24604.t1 AT2G23050 33.418 392 194 9 113 487 1 342 1.56e-56 194
MS.gene24604.t1 AT5G64330 43.154 241 124 1 259 486 372 612 3.70e-56 200
MS.gene24604.t1 AT5G64330 37.121 264 126 4 7 232 33 294 4.44e-50 183
MS.gene24604.t1 AT5G64330 43.154 241 124 1 259 486 372 612 3.75e-56 201
MS.gene24604.t1 AT5G64330 37.121 264 126 4 7 232 33 294 1.11e-49 183
MS.gene24604.t1 AT3G03510 30.244 410 230 8 82 485 8 367 2.34e-51 182
MS.gene24604.t1 AT5G48130 27.961 515 289 14 19 505 32 492 1.27e-49 181
MS.gene24604.t1 AT3G19850 25.956 497 289 11 26 478 3 464 4.59e-49 179
MS.gene24604.t1 AT5G17580 26.804 485 295 9 23 485 2 448 1.19e-46 172
MS.gene24604.t1 AT5G17580 26.804 485 295 9 23 485 17 463 1.29e-46 172
MS.gene24604.t1 AT3G22104 27.813 471 258 13 22 464 4 420 1.61e-46 171
MS.gene24604.t1 AT1G50280 26.819 481 277 11 35 473 13 460 4.32e-43 161
MS.gene24604.t1 AT1G50280 27.088 443 251 10 70 473 18 427 2.10e-41 156
MS.gene24604.t1 AT3G22104 26.904 394 211 10 98 464 2 345 4.04e-31 126
MS.gene24604.t1 AT3G22104 26.904 394 211 10 98 464 2 345 4.04e-31 126
MS.gene24604.t1 AT3G22104 26.904 394 211 10 98 464 2 345 4.04e-31 126
MS.gene24604.t1 AT3G49900 34.615 156 89 6 18 167 57 205 1.39e-11 67.4
MS.gene24604.t1 AT3G49900 34.615 156 89 6 18 167 57 205 1.49e-11 67.4

Find 85 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCATGCATAGAAAATT+TGG 0.155376 1.2:-49184134 MS.gene24604:CDS
ACTTCACAAAGTGCAAATTT+TGG 0.206287 1.2:-49182923 MS.gene24604:CDS
TCAACTGAATATCCCATATT+TGG 0.208718 1.2:+49184058 None:intergenic
CTTAGACTAACCACATTTAA+TGG 0.227040 1.2:+49184730 None:intergenic
TTTCTTCTAAAGAAAATTCT+TGG 0.248825 1.2:+49182749 None:intergenic
AGGAAATCAAAGGGCATTAT+TGG 0.252444 1.2:-49184251 MS.gene24604:CDS
CATCATTAATATATTATCTT+AGG 0.256645 1.2:-49184360 MS.gene24604:CDS
TTACAAATGAATGAAAATTA+TGG 0.278342 1.2:-49184691 MS.gene24604:CDS
TGCTACAGGGTTTGTACAAC+TGG 0.331219 1.2:-49185253 MS.gene24604:intron
GGAGTAGTTGATGTTGTTCC+AGG 0.353890 1.2:+49183974 None:intergenic
ACTACTCCATTATGTATAAC+TGG 0.355235 1.2:-49183959 MS.gene24604:CDS
GACAATTGTGGCTAATTTGT+TGG 0.360833 1.2:-49183894 MS.gene24604:CDS
CCTTCTCCAGTTATACATAA+TGG 0.382336 1.2:+49183953 None:intergenic
GCATAGAAAATTTGGAGAAA+AGG 0.389239 1.2:-49184126 MS.gene24604:CDS
ATCCTCGGAACATGCCTTGA+TGG 0.392643 1.2:+49184519 None:intergenic
AATGATGCAGCAACATTCTC+AGG 0.395320 1.2:+49184376 None:intergenic
CATAGAAAATTTGGAGAAAA+GGG 0.402624 1.2:-49184125 MS.gene24604:CDS
TGCTATTGATGTATACCTTA+AGG 0.402665 1.2:-49183759 MS.gene24604:intron
GCATTATTGGAAGAAATTGT+AGG 0.405381 1.2:-49184238 MS.gene24604:CDS
ACACCAAGTAGAAGTTTAGA+AGG 0.417642 1.2:-49184271 MS.gene24604:CDS
TCCAATGGCCTAGCATAATC+AGG 0.417891 1.2:+49183797 None:intergenic
TTCGTACATCAATTTCTAGT+TGG 0.419163 1.2:-49182970 MS.gene24604:CDS
TTTGGATTCTCAAGGAGTAA+TGG 0.443429 1.2:-49182905 MS.gene24604:CDS
TAAATGGCATTGTTGAAGCT+TGG 0.453776 1.2:-49185458 MS.gene24604:CDS
ATTGTATCAATTGAATCAAA+AGG 0.455614 1.2:-49184406 MS.gene24604:CDS
TACCTTCTAAATATCTCCTT+AGG 0.462829 1.2:-49184189 MS.gene24604:CDS
GAAAATTTGGAGAAAAGGGT+TGG 0.465484 1.2:-49184121 MS.gene24604:CDS
TTTCCATTGCTTTCTAGAAG+TGG 0.467653 1.2:-49184892 MS.gene24604:CDS
AAGCTGACTAAAACTAAGAA+AGG 0.469100 1.2:-49182785 MS.gene24604:CDS
GGAACATGCCTTGATGGTTA+AGG 0.470939 1.2:+49184525 None:intergenic
TGCATCAACTCCACCAATCA+AGG 0.474680 1.2:+49183928 None:intergenic
CATTATTGGAAGAAATTGTA+GGG 0.475629 1.2:-49184237 MS.gene24604:CDS
CTTTCTGAATCTATTAGCCA+TGG 0.477232 1.2:+49183118 None:intergenic
TGACTAAAACTAAGAAAGGT+TGG 0.477655 1.2:-49182781 MS.gene24604:CDS
AACCTAAGGAGATATTTAGA+AGG 0.481256 1.2:+49184187 None:intergenic
TCCTGATTATGCTAGGCCAT+TGG 0.481839 1.2:-49183798 MS.gene24604:CDS
GCTGACTCTACAAATGAAGA+TGG 0.482347 1.2:-49184850 MS.gene24604:CDS
CATTGATTCCTTAACCATCA+AGG 0.484557 1.2:-49184533 MS.gene24604:CDS
AAATTAGCCACAATTGTCAT+AGG 0.488288 1.2:+49183899 None:intergenic
TTCTCAAGGAGTAATGGAAA+TGG 0.489689 1.2:-49182899 MS.gene24604:CDS
GCAGCAAGAGATTGAAACTT+AGG 0.490656 1.2:+49183827 None:intergenic
CACAAGCTTCAAGTGATGAT+TGG 0.491149 1.2:-49184477 MS.gene24604:CDS
TTTCCTTCTAAACTTCTACT+TGG 0.493969 1.2:+49184268 None:intergenic
CTTCAATTCCTGATTATGCT+AGG 0.500244 1.2:-49183805 MS.gene24604:CDS
ACTGGAGAAGGATCCTTGAT+TGG 0.500424 1.2:-49183941 MS.gene24604:CDS
CATGGCTAATAGATTCAGAA+AGG 0.514633 1.2:-49183117 MS.gene24604:CDS
GAAGTTTAGAAGGAAATCAA+AGG 0.518783 1.2:-49184261 MS.gene24604:CDS
TTGCACTTTGTGAAGTCTCA+AGG 0.519032 1.2:+49182930 None:intergenic
TATGCTAGGCCATTGGATGA+TGG 0.527344 1.2:-49183791 MS.gene24604:CDS
TGAATGAAAATTATGGTGAA+AGG 0.536604 1.2:-49184684 MS.gene24604:CDS
GTGATGTTACCATTGCAGTA+GGG 0.537044 1.2:-49185222 MS.gene24604:CDS
CTTGATTGTCTATTCATCAA+AGG 0.542005 1.2:+49184328 None:intergenic
TAGCTGTTCTTAGCAACCTA+AGG 0.543253 1.2:+49184173 None:intergenic
ACAAGGTGGTGAAAACTTGA+GGG 0.545706 1.2:-49182861 MS.gene24604:CDS
GGAGAAGGATCCTTGATTGG+TGG 0.545909 1.2:-49183938 MS.gene24604:CDS
TTACAACTTCATGATGTACC+TGG 0.555478 1.2:-49184814 MS.gene24604:CDS
GTCAATTGTAGGCACATCCA+TGG 0.560445 1.2:-49183135 MS.gene24604:intron
CCATTATGTATAACTGGAGA+AGG 0.561165 1.2:-49183953 MS.gene24604:CDS
TCTGATATATTTCGTCGTGA+TGG 0.561374 1.2:-49185428 MS.gene24604:CDS
CACAAGGTGGTGAAAACTTG+AGG 0.568143 1.2:-49182862 MS.gene24604:CDS
AGTGATGTTACCATTGCAGT+AGG 0.569613 1.2:-49185223 MS.gene24604:CDS
TGATGTTACCATTGCAGTAG+GGG 0.570086 1.2:-49185221 MS.gene24604:CDS
GACAAAACTAGTGTTAGTCA+AGG 0.571383 1.2:-49184298 MS.gene24604:CDS
TGATGTTTCCCCTACTGCAA+TGG 0.578219 1.2:+49185213 None:intergenic
ATGGCTAATAGATTCAGAAA+GGG 0.578790 1.2:-49183116 MS.gene24604:CDS
GGATGCATATCTTGCTGAGG+TGG 0.586152 1.2:-49183873 MS.gene24604:CDS
AAGCTTCAAGTGATGATTGG+TGG 0.586288 1.2:-49184474 MS.gene24604:CDS
AAGTTTAGAAGGAAATCAAA+GGG 0.591610 1.2:-49184260 MS.gene24604:CDS
AACCATCAAGGCATGTTCCG+AGG 0.595842 1.2:-49184521 MS.gene24604:CDS
AATCCACTTCTAGAAAGCAA+TGG 0.597726 1.2:+49184889 None:intergenic
GTTGGATGCATATCTTGCTG+AGG 0.610750 1.2:-49183876 MS.gene24604:CDS
ACCACTGAGAGTAATAGTGC+AGG 0.612486 1.2:-49183017 MS.gene24604:CDS
TGATATAAACCATCATCCAA+TGG 0.612736 1.2:+49183782 None:intergenic
GCTTGATGAAGTTGAACTTG+TGG 0.618217 1.2:-49184092 MS.gene24604:CDS
ACCTGCACTATTACTCTCAG+TGG 0.620285 1.2:+49183016 None:intergenic
TTTATGTCAATGTATCAACC+TGG 0.620633 1.2:-49183992 MS.gene24604:CDS
AGAAATCACACCATTAAATG+TGG 0.630366 1.2:-49184740 MS.gene24604:CDS
ACAAAACTAGTGTTAGTCAA+GGG 0.633780 1.2:-49184297 MS.gene24604:CDS
GAGTAATGGAAATGGTCAAG+TGG 0.635636 1.2:-49182891 MS.gene24604:CDS
CAACTTCATGATGTACCTGG+TGG 0.640051 1.2:-49184811 MS.gene24604:CDS
TTCGTCGTGATGGCCACACA+TGG 0.641113 1.2:-49185418 MS.gene24604:intron
GGTCAAGTGGACCCTACACA+AGG 0.652910 1.2:-49182878 MS.gene24604:CDS
TCGTGTATCAGAGCTAGAGA+AGG 0.660514 1.2:-49182837 MS.gene24604:CDS
ATTGACACCTATGACAATTG+TGG 0.686575 1.2:-49183906 MS.gene24604:CDS
CAAGTGGACCCTACACAAGG+TGG 0.706968 1.2:-49182875 MS.gene24604:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATCATTAATATATTATCTT+AGG - chr1.2:49183834-49183853 MS.gene24604:CDS 15.0%
!! TTACAAATGAATGAAAATTA+TGG - chr1.2:49183503-49183522 MS.gene24604:intron 15.0%
!!! ACAATAAGTCTTTTATATAA+TGG + chr1.2:49183773-49183792 None:intergenic 15.0%
!!! CAAATAGTTTTTCTAATTAA+TGG - chr1.2:49182885-49182904 MS.gene24604:CDS 15.0%
!! ATTCATTTCGACTAAATATT+TGG + chr1.2:49184782-49184801 None:intergenic 20.0%
!! ATTGTATCAATTGAATCAAA+AGG - chr1.2:49183788-49183807 MS.gene24604:CDS 20.0%
!! TCAAAATTACATAAAGATCA+TGG + chr1.2:49183268-49183287 None:intergenic 20.0%
!! TTAGAAAAAATTGCAACAAA+CGG + chr1.2:49183113-49183132 None:intergenic 20.0%
!!! ACATGGTAAGAATATTTTTT+AGG - chr1.2:49182793-49182812 MS.gene24604:CDS 20.0%
!!! AGAAATTTTATGTCAATTGT+AGG - chr1.2:49185048-49185067 MS.gene24604:intron 20.0%
!!! CAATAGTATTTCTAAATTGA+CGG - chr1.2:49184666-49184685 MS.gene24604:CDS 20.0%
!!! CATTAAAGTATTACAGTATA+TGG - chr1.2:49184586-49184605 MS.gene24604:CDS 20.0%
!!! CTGAATTTGAATTTTGAATT+AGG - chr1.2:49184470-49184489 MS.gene24604:CDS 20.0%
!!! GATATTTTGATTCCAAATAT+GGG - chr1.2:49184124-49184143 MS.gene24604:CDS 20.0%
!!! TTTCTTCTAAAGAAAATTCT+TGG + chr1.2:49185448-49185467 None:intergenic 20.0%
! AAAAATATTCTTACCATGTG+TGG + chr1.2:49182792-49182811 None:intergenic 25.0%
! AAGTTTAGAAGGAAATCAAA+GGG - chr1.2:49183934-49183953 MS.gene24604:CDS 25.0%
! ATGATAAGCAAACACAAAAT+AGG - chr1.2:49183201-49183220 MS.gene24604:intron 25.0%
! CATAGAAAATTTGGAGAAAA+GGG - chr1.2:49184069-49184088 MS.gene24604:CDS 25.0%
! CATTATTGGAAGAAATTGTA+GGG - chr1.2:49183957-49183976 MS.gene24604:CDS 25.0%
! GAAAAAAGTTACGTTCAAAT+AGG - chr1.2:49182857-49182876 MS.gene24604:CDS 25.0%
! TGAATGAAAATTATGGTGAA+AGG - chr1.2:49183510-49183529 MS.gene24604:intron 25.0%
! TTCATCATGCATAGAAAATT+TGG - chr1.2:49184060-49184079 MS.gene24604:CDS 25.0%
! TTCTCAAAAATCAGTTTCAA+TGG - chr1.2:49183149-49183168 MS.gene24604:intron 25.0%
!! ATCATAACAAAGTTTTGCTA+TGG - chr1.2:49183422-49183441 MS.gene24604:intron 25.0%
!! ATCATATTTTATCTTGCTAC+AGG - chr1.2:49182927-49182946 MS.gene24604:CDS 25.0%
!! TCATATTTTATCTTGCTACA+GGG - chr1.2:49182928-49182947 MS.gene24604:CDS 25.0%
!!! GGATATTTTGATTCCAAATA+TGG - chr1.2:49184123-49184142 MS.gene24604:CDS 25.0%
!!! GGTATGACACTTTTTTTATT+AGG + chr1.2:49183989-49184008 None:intergenic 25.0%
!!! TACTTTAGGGACTAAATTTT+AGG - chr1.2:49184697-49184716 MS.gene24604:CDS 25.0%
AAATTAGCCACAATTGTCAT+AGG + chr1.2:49184298-49184317 None:intergenic 30.0%
AACCTAAGGAGATATTTAGA+AGG + chr1.2:49184010-49184029 None:intergenic 30.0%
AAGCTGACTAAAACTAAGAA+AGG - chr1.2:49185409-49185428 MS.gene24604:intron 30.0%
ACAAAACTAGTGTTAGTCAA+GGG - chr1.2:49183897-49183916 MS.gene24604:CDS 30.0%
ACTACTCCATTATGTATAAC+TGG - chr1.2:49184235-49184254 MS.gene24604:CDS 30.0%
AGAAATCACACCATTAAATG+TGG - chr1.2:49183454-49183473 MS.gene24604:intron 30.0%
ATGAAACACTCAAACCAATA+TGG - chr1.2:49184838-49184857 MS.gene24604:CDS 30.0%
ATGGCTAATAGATTCAGAAA+GGG - chr1.2:49185078-49185097 MS.gene24604:intron 30.0%
CTTAGACTAACCACATTTAA+TGG + chr1.2:49183467-49183486 None:intergenic 30.0%
CTTGATTGTCTATTCATCAA+AGG + chr1.2:49183869-49183888 None:intergenic 30.0%
GAAGTTTAGAAGGAAATCAA+AGG - chr1.2:49183933-49183952 MS.gene24604:CDS 30.0%
GCATAGAAAATTTGGAGAAA+AGG - chr1.2:49184068-49184087 MS.gene24604:CDS 30.0%
GCATTATTGGAAGAAATTGT+AGG - chr1.2:49183956-49183975 MS.gene24604:CDS 30.0%
TACCTTCTAAATATCTCCTT+AGG - chr1.2:49184005-49184024 MS.gene24604:CDS 30.0%
TCAACTGAATATCCCATATT+TGG + chr1.2:49184139-49184158 None:intergenic 30.0%
TGACTAAAACTAAGAAAGGT+TGG - chr1.2:49185413-49185432 MS.gene24604:intron 30.0%
TGATATAAACCATCATCCAA+TGG + chr1.2:49184415-49184434 None:intergenic 30.0%
TGCTATTGATGTATACCTTA+AGG - chr1.2:49184435-49184454 MS.gene24604:CDS 30.0%
TTTATGTCAATGTATCAACC+TGG - chr1.2:49184202-49184221 MS.gene24604:CDS 30.0%
TTTCCTTCTAAACTTCTACT+TGG + chr1.2:49183929-49183948 None:intergenic 30.0%
! ACTTCACAAAGTGCAAATTT+TGG - chr1.2:49185271-49185290 MS.gene24604:intron 30.0%
! GACGGACTTTATATACTTTA+GGG - chr1.2:49184684-49184703 MS.gene24604:CDS 30.0%
!! TGACGGACTTTATATACTTT+AGG - chr1.2:49184683-49184702 MS.gene24604:CDS 30.0%
!! TTCGTACATCAATTTCTAGT+TGG - chr1.2:49185224-49185243 MS.gene24604:CDS 30.0%
!!! AACATCATTTTTTCTCCACA+AGG - chr1.2:49182997-49183016 MS.gene24604:CDS 30.0%
ACACCAAGTAGAAGTTTAGA+AGG - chr1.2:49183923-49183942 MS.gene24604:CDS 35.0%
AGATGAGTACAAGTGAAATG+AGG + chr1.2:49185003-49185022 None:intergenic 35.0%
AGTACAAGTGAAATGAGGTT+AGG + chr1.2:49184998-49185017 None:intergenic 35.0%
ATGCACACACTATCTTCTTA+GGG - chr1.2:49183060-49183079 MS.gene24604:CDS 35.0%
ATTGACACCTATGACAATTG+TGG - chr1.2:49184288-49184307 MS.gene24604:CDS 35.0%
CATGGCTAATAGATTCAGAA+AGG - chr1.2:49185077-49185096 MS.gene24604:intron 35.0%
CCATTATGTATAACTGGAGA+AGG - chr1.2:49184241-49184260 MS.gene24604:CDS 35.0%
CCTTCTCCAGTTATACATAA+TGG + chr1.2:49184244-49184263 None:intergenic 35.0%
CTCGTGTTAGACATCAATAT+CGG + chr1.2:49184940-49184959 None:intergenic 35.0%
CTTCAATTCCTGATTATGCT+AGG - chr1.2:49184389-49184408 MS.gene24604:CDS 35.0%
CTTTCTGAATCTATTAGCCA+TGG + chr1.2:49185079-49185098 None:intergenic 35.0%
GAAAATTTGGAGAAAAGGGT+TGG - chr1.2:49184073-49184092 MS.gene24604:CDS 35.0%
GACAAAACTAGTGTTAGTCA+AGG - chr1.2:49183896-49183915 MS.gene24604:CDS 35.0%
TCTGATATATTTCGTCGTGA+TGG - chr1.2:49182766-49182785 MS.gene24604:CDS 35.0%
TTACAACTTCATGATGTACC+TGG - chr1.2:49183380-49183399 MS.gene24604:intron 35.0%
TTTGGATTCTCAAGGAGTAA+TGG - chr1.2:49185289-49185308 MS.gene24604:intron 35.0%
! AATCCACTTCTAGAAAGCAA+TGG + chr1.2:49183308-49183327 None:intergenic 35.0%
! GACAATTGTGGCTAATTTGT+TGG - chr1.2:49184300-49184319 MS.gene24604:CDS 35.0%
! GTGCAAATTTTGGATTCTCA+AGG - chr1.2:49185281-49185300 MS.gene24604:intron 35.0%
! TCGATGAAGTTTTCAGCAAT+TGG - chr1.2:49183561-49183580 MS.gene24604:intron 35.0%
! TTCTCAAGGAGTAATGGAAA+TGG - chr1.2:49185295-49185314 MS.gene24604:intron 35.0%
! TTTCCACACTTTTCCTTCTA+TGG - chr1.2:49183086-49183105 MS.gene24604:CDS 35.0%
! TTTCCATTGCTTTCTAGAAG+TGG - chr1.2:49183302-49183321 MS.gene24604:intron 35.0%
!! AGGAAATCAAAGGGCATTAT+TGG - chr1.2:49183943-49183962 MS.gene24604:CDS 35.0%
!! CATTGATTCCTTAACCATCA+AGG - chr1.2:49183661-49183680 MS.gene24604:intron 35.0%
AAGCTTCAAGTGATGATTGG+TGG - chr1.2:49183720-49183739 MS.gene24604:intron 40.0%
AATGATGCAGCAACATTCTC+AGG + chr1.2:49183821-49183840 None:intergenic 40.0%
ACAAGGTGGTGAAAACTTGA+GGG - chr1.2:49185333-49185352 MS.gene24604:intron 40.0%
AGTGATGTTACCATTGCAGT+AGG - chr1.2:49182971-49182990 MS.gene24604:CDS 40.0%
AGTTTCAGCCGAAAAATCCT+CGG + chr1.2:49183693-49183712 None:intergenic 40.0%
CACAAGCTTCAAGTGATGAT+TGG - chr1.2:49183717-49183736 MS.gene24604:intron 40.0%
CACTCAAACCAATATGGACA+TGG - chr1.2:49184844-49184863 MS.gene24604:CDS 40.0%
GAATGTTAACATGCACCTTG+TGG + chr1.2:49183015-49183034 None:intergenic 40.0%
GATGCACACACTATCTTCTT+AGG - chr1.2:49183059-49183078 MS.gene24604:CDS 40.0%
GCAGCAAGAGATTGAAACTT+AGG + chr1.2:49184370-49184389 None:intergenic 40.0%
GCTTGATGAAGTTGAACTTG+TGG - chr1.2:49184102-49184121 MS.gene24604:CDS 40.0%
GTGATGTTACCATTGCAGTA+GGG - chr1.2:49182972-49182991 MS.gene24604:CDS 40.0%
TAGCTGTTCTTAGCAACCTA+AGG + chr1.2:49184024-49184043 None:intergenic 40.0%
TGATGTTACCATTGCAGTAG+GGG - chr1.2:49182973-49182992 MS.gene24604:CDS 40.0%
TTGCACTTTGTGAAGTCTCA+AGG + chr1.2:49185267-49185286 None:intergenic 40.0%
! AAGTTTTCACCACCTTGTGT+AGG + chr1.2:49185331-49185350 None:intergenic 40.0%
! AGTTTTCACCACCTTGTGTA+GGG + chr1.2:49185330-49185349 None:intergenic 40.0%
! GAGTAATGGAAATGGTCAAG+TGG - chr1.2:49185303-49185322 MS.gene24604:intron 40.0%
! GCTGACTCTACAAATGAAGA+TGG - chr1.2:49183344-49183363 MS.gene24604:intron 40.0%
! TCAAATGTTTTGTCTCCACC+AGG + chr1.2:49183401-49183420 None:intergenic 40.0%
ACCACTGAGAGTAATAGTGC+AGG - chr1.2:49185177-49185196 MS.gene24604:intron 45.0%
ACCTGCACTATTACTCTCAG+TGG + chr1.2:49185181-49185200 None:intergenic 45.0%
ACTGGAGAAGGATCCTTGAT+TGG - chr1.2:49184253-49184272 MS.gene24604:CDS 45.0%
CAACTTCATGATGTACCTGG+TGG - chr1.2:49183383-49183402 MS.gene24604:intron 45.0%
CACAAGGTGGTGAAAACTTG+AGG - chr1.2:49185332-49185351 MS.gene24604:intron 45.0%
CAGAAGCAAGCATCACCTTA+AGG + chr1.2:49184453-49184472 None:intergenic 45.0%
GGACCATAGAAGGAAAAGTG+TGG + chr1.2:49183092-49183111 None:intergenic 45.0%
GTCAATTGTAGGCACATCCA+TGG - chr1.2:49185059-49185078 MS.gene24604:intron 45.0%
GTCGTGTACCATGTCCATAT+TGG + chr1.2:49184855-49184874 None:intergenic 45.0%
GTTGGATGCATATCTTGCTG+AGG - chr1.2:49184318-49184337 MS.gene24604:CDS 45.0%
TATGCTAGGCCATTGGATGA+TGG - chr1.2:49184403-49184422 MS.gene24604:CDS 45.0%
TCCAATGGCCTAGCATAATC+AGG + chr1.2:49184400-49184419 None:intergenic 45.0%
TCCTGATTATGCTAGGCCAT+TGG - chr1.2:49184396-49184415 MS.gene24604:CDS 45.0%
TCGTGTATCAGAGCTAGAGA+AGG - chr1.2:49185357-49185376 MS.gene24604:intron 45.0%
TGATGTTTCCCCTACTGCAA+TGG + chr1.2:49182984-49183003 None:intergenic 45.0%
TGCAACAAACGGACCATAGA+AGG + chr1.2:49183102-49183121 None:intergenic 45.0%
TGCATCAACTCCACCAATCA+AGG + chr1.2:49184269-49184288 None:intergenic 45.0%
TGCTACAGGGTTTGTACAAC+TGG - chr1.2:49182941-49182960 MS.gene24604:CDS 45.0%
! GGAACATGCCTTGATGGTTA+AGG + chr1.2:49183672-49183691 None:intergenic 45.0%
! GGAGTAGTTGATGTTGTTCC+AGG + chr1.2:49184223-49184242 None:intergenic 45.0%
! GGCATGTTCCGAGGATTTTT+CGG - chr1.2:49183682-49183701 MS.gene24604:intron 45.0%
AACCATCAAGGCATGTTCCG+AGG - chr1.2:49183673-49183692 MS.gene24604:intron 50.0%
ATCCTCGGAACATGCCTTGA+TGG + chr1.2:49183678-49183697 None:intergenic 50.0%
GGAGAAGGATCCTTGATTGG+TGG - chr1.2:49184256-49184275 MS.gene24604:CDS 50.0%
GGATGCATATCTTGCTGAGG+TGG - chr1.2:49184321-49184340 MS.gene24604:CDS 50.0%
GGTACACGACATTGACACGT+AGG - chr1.2:49184865-49184884 MS.gene24604:CDS 50.0%
CAAGTGGACCCTACACAAGG+TGG - chr1.2:49185319-49185338 MS.gene24604:intron 55.0%
GGTCAAGTGGACCCTACACA+AGG - chr1.2:49185316-49185335 MS.gene24604:intron 55.0%
TTCGTCGTGATGGCCACACA+TGG - chr1.2:49182776-49182795 MS.gene24604:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 49182739 49185477 49182739 ID=MS.gene24604
chr1.2 mRNA 49182739 49185477 49182739 ID=MS.gene24604.t1;Parent=MS.gene24604
chr1.2 exon 49185419 49185477 49185419 ID=MS.gene24604.t1.exon1;Parent=MS.gene24604.t1
chr1.2 CDS 49185419 49185477 49185419 ID=cds.MS.gene24604.t1;Parent=MS.gene24604.t1
chr1.2 exon 49185198 49185267 49185198 ID=MS.gene24604.t1.exon2;Parent=MS.gene24604.t1
chr1.2 CDS 49185198 49185267 49185198 ID=cds.MS.gene24604.t1;Parent=MS.gene24604.t1
chr1.2 exon 49183760 49184914 49183760 ID=MS.gene24604.t1.exon3;Parent=MS.gene24604.t1
chr1.2 CDS 49183760 49184914 49183760 ID=cds.MS.gene24604.t1;Parent=MS.gene24604.t1
chr1.2 exon 49182739 49183146 49182739 ID=MS.gene24604.t1.exon4;Parent=MS.gene24604.t1
chr1.2 CDS 49182739 49183146 49182739 ID=cds.MS.gene24604.t1;Parent=MS.gene24604.t1
Gene Sequence

>MS.gene24604

ATGGCATTGTTGAAGCTTGGATCTAAATCTGATATATTTCGTCGTGATGGCCACACATGGTAAGAATATTTTTTAGGCTAAAATGCACTTTTATTGTATATCATATTGCTTCAATAGAGAAAAAAGTTACGTTCAAATAGGTTCAACAAATAGTTTTTCTAATTAATGGTTCAATTAATGATTATTTGATCATATTTTATCTTGCTACAGGGTTTGTACAACTGGACTTACAAGTGATGTTACCATTGCAGTAGGGGAAACATCATTTTTTCTCCACAAGGTGCATGTTAACATTCAACTTTTATTGAAAATGCTTATTTGATGCACACACTATCTTCTTAGGGTTTTTTCCACACTTTTCCTTCTATGGTCCGTTTGTTGCAATTTTTTCTAAAGAATATCACTAGCTTTTCTCAAAAATCAGTTTCAATGGAATGATTCAAAAAAAGAAAGATTTTCATTATGATAAGCAAACACAAAATAGGTTATGTTTTTCTTAGAAAAAAAAAACTTTAAATATTCAATACCATGATCTTTATGTAATTTTGATTTTGATATTGTAGTTTCCATTGCTTTCTAGAAGTGGATTACTAAAGAAACTTTTTGCTGACTCTACAAATGAAGATGGATCAAATTCTATTTTACAACTTCATGATGTACCTGGTGGAGACAAAACATTTGAGATCATAACAAAGTTTTGCTATGGTGTAAAACTAGAAATCACACCATTAAATGTGGTTAGTCTAAGATGTGCAGCAGAATATTTACAAATGAATGAAAATTATGGTGAAAGGAATTTAATAGAAGTGACAAAAAAAATTCTCGATGAAGTTTTCAGCAATTGGTCAGACTCAATAAAAGCACTTCAAACATGTGAAGAAGTGAAATCTTATGCAGAAGATCTTCACATTATTTCAAGATGCATTGATTCCTTAACCATCAAGGCATGTTCCGAGGATTTTTCGGCTGAAACTAAGTCACAAGCTTCAAGTGATGATTGGTGGTATGAAGATTTGTGTTTGTTAAGTTTGCCATTATATAAAAGACTTATTGTATCAATTGAATCAAAAGGTATGAAACCTGAGAATGTTGCTGCATCATTAATATATTATCTTAGGAGATATATACCTTTGATGAATAGACAATCAAGTTTCAATGACAAAACTAGTGTTAGTCAAGGGACAACACCAAGTAGAAGTTTAGAAGGAAATCAAAGGGCATTATTGGAAGAAATTGTAGGGTTGATTCCTAATAAAAAAAGTGTCATACCTTCTAAATATCTCCTTAGGTTGCTAAGAACAGCTATGATATTACATGCAAGTTCATCATGCATAGAAAATTTGGAGAAAAGGGTTGGTTCACAGCTTGATGAAGTTGAACTTGTGGATATTTTGATTCCAAATATGGGATATTCAGTTGAGACACTTTATGATATAGATTGTATTCAAAGAATTATTGATCATTTTATGTCAATGTATCAACCTGGAACAACATCAACTACTCCATTATGTATAACTGGAGAAGGATCCTTGATTGGTGGAGTTGATGCATTGACACCTATGACAATTGTGGCTAATTTGTTGGATGCATATCTTGCTGAGGTGGCTCTTGATGTTAATTTGAAGTTGCCTAAGTTTCAATCTCTTGCTGCTTCAATTCCTGATTATGCTAGGCCATTGGATGATGGTTTATATCATGCTATTGATGTATACCTTAAGGTGATGCTTGCTTCTGAATTTGAATTTTGAATTAGGTATTTGAAAGTTTTTATCATTGCTTTTTTCAAAGTTAAATATGAATAATCTTGAATAAAACATCAAAATTAGTCTCTAAAGCATTCATTTATTCATTAAAGTATTACAGTATATGGAATTCATCAATTTAGTTCTTAATGTCTTAATATATATGAGAGACTAGAAAAGAAAGACAATAGTATTTCTAAATTGACGGACTTTATATACTTTAGGGACTAAATTTTAGGAGAGTGATATTTTAGAGACTAAATTAATAGTTTATTTGAGACTATATATAAATGCTTAACCAAATATTTAGTCGAAATGAATATAATAAATTATTATAGCTGAGATAGTCACTAAACTATGAAACACTCAAACCAATATGGACATGGTACACGACATTGACACGTAGGCATCAACAATGATTTAAAAAAGAAAGTTAGTTGAATGTAATCAAATATGCCGATATTGATGTCTAACACGAGACATGTTTTCAATCTGACATGTCGCTACTGCATATCCTAACCTCATTTCACTTGTACTCATCTTTTTTTATATGATGATTCTAATGTAAGAAATTTTATGTCAATTGTAGGCACATCCATGGCTAATAGATTCAGAAAGGGAACAATTTTGCAGACTCATGAACTGTCAAAAGTTGTCATTAGAAGCAAGCACACATGCTGCACAAAATGAACGAATACCACTGAGAGTAATAGTGCAGGTTTTGTTTTTTGAACAGCTTCGACTTCGTACATCAATTTCTAGTTGGTTGTTTGTTTCAGACAACCTTGAGACTTCACAAAGTGCAAATTTTGGATTCTCAAGGAGTAATGGAAATGGTCAAGTGGACCCTACACAAGGTGGTGAAAACTTGAGGGATCGTGTATCAGAGCTAGAGAAGGAATGTTCAAGCATTAGAAATGAGCTTAAGAAGCTGACTAAAACTAAGAAAGGTTGGAGCATTTTTCCAAGAATTTTCTTTAGAAGAAAATCATCCTAG

Protein sequence

>MS.gene24604.t1

MALLKLGSKSDIFRRDGHTWVCTTGLTSDVTIAVGETSFFLHKFPLLSRSGLLKKLFADSTNEDGSNSILQLHDVPGGDKTFEIITKFCYGVKLEITPLNVVSLRCAAEYLQMNENYGERNLIEVTKKILDEVFSNWSDSIKALQTCEEVKSYAEDLHIISRCIDSLTIKACSEDFSAETKSQASSDDWWYEDLCLLSLPLYKRLIVSIESKGMKPENVAASLIYYLRRYIPLMNRQSSFNDKTSVSQGTTPSRSLEGNQRALLEEIVGLIPNKKSVIPSKYLLRLLRTAMILHASSSCIENLEKRVGSQLDEVELVDILIPNMGYSVETLYDIDCIQRIIDHFMSMYQPGTTSTTPLCITGEGSLIGGVDALTPMTIVANLLDAYLAEVALDVNLKLPKFQSLAASIPDYARPLDDGLYHAIDVYLKAHPWLIDSEREQFCRLMNCQKLSLEASTHAAQNERIPLRVIVQVLFFEQLRLRTSISSWLFVSDNLETSQSANFGFSRSNGNGQVDPTQGGENLRDRVSELEKECSSIRNELKKLTKTKKGWSIFPRIFFRRKSS