AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94631

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94631.t1 MTR_2g084595 97.319 634 17 0 1 634 1 634 0.0 1282
MS.gene94631.t1 MTR_2g084595 97.085 446 13 0 1 446 1 446 0.0 903
MS.gene94631.t1 MTR_8g078900 39.130 667 340 16 13 629 10 660 1.53e-152 455
MS.gene94631.t1 MTR_1g094850 39.601 601 326 11 10 601 13 585 3.71e-150 447
MS.gene94631.t1 MTR_2g048390 47.309 446 227 5 6 445 9 452 9.74e-147 433
MS.gene94631.t1 MTR_8g078900 38.700 646 330 16 34 629 1 630 3.04e-142 428
MS.gene94631.t1 MTR_4g093850 37.110 609 331 10 6 576 27 621 1.08e-138 420
MS.gene94631.t1 MTR_8g078900 39.664 595 311 14 67 629 42 620 3.69e-138 417
MS.gene94631.t1 MTR_2g018750 37.671 584 324 8 6 577 9 564 1.87e-137 415
MS.gene94631.t1 MTR_2g009340 36.174 622 340 12 6 583 27 635 1.62e-125 386
MS.gene94631.t1 MTR_1g064360 35.501 569 317 8 10 570 13 539 5.86e-123 376
MS.gene94631.t1 MTR_4g022330 36.643 554 322 7 23 571 34 563 1.15e-122 377
MS.gene94631.t1 MTR_5g016060 35.556 585 338 12 7 584 24 576 2.50e-114 355
MS.gene94631.t1 MTR_7g073980 33.871 620 355 14 18 631 30 600 9.82e-110 344
MS.gene94631.t1 MTR_8g078900 39.224 464 241 10 13 445 10 463 3.32e-105 327
MS.gene94631.t1 MTR_7g108290 34.864 588 335 12 21 591 34 590 3.88e-105 333
MS.gene94631.t1 MTR_4g093850 37.037 486 258 9 6 455 27 500 1.70e-104 327
MS.gene94631.t1 MTR_5g032780 38.400 500 276 8 21 494 24 517 5.32e-104 329
MS.gene94631.t1 MTR_4g095430 33.212 548 339 7 16 562 6 527 1.90e-101 321
MS.gene94631.t1 MTR_1g088885 34.175 594 328 13 21 591 34 587 2.23e-101 322
MS.gene94631.t1 MTR_5g015790 38.509 483 260 9 23 495 27 482 9.94e-100 318
MS.gene94631.t1 MTR_8g090220 30.283 601 333 11 15 582 44 591 8.96e-99 315
MS.gene94631.t1 MTR_8g090220 33.069 505 280 7 15 497 44 512 1.30e-97 308
MS.gene94631.t1 MTR_1g106430 34.622 543 311 10 10 535 13 528 2.53e-96 308
MS.gene94631.t1 MTR_1g014070 34.927 481 289 6 21 495 25 487 3.75e-94 303
MS.gene94631.t1 MTR_3g062540 32.801 564 321 10 2 563 3 510 6.09e-92 295
MS.gene94631.t1 MTR_8g078900 40.306 392 211 9 67 445 42 423 7.99e-91 288
MS.gene94631.t1 MTR_5g016060 34.827 491 285 10 100 584 1 462 1.94e-89 287
MS.gene94631.t1 MTR_8g069330 33.581 539 292 10 26 536 29 529 2.55e-88 286
MS.gene94631.t1 MTR_5g075640 33.805 565 314 10 4 562 6 516 2.78e-88 286
MS.gene94631.t1 MTR_4g134210 34.034 476 286 8 21 494 24 473 4.12e-84 276
MS.gene94631.t1 MTR_3g062540 32.887 523 293 11 43 563 2 468 1.93e-83 272
MS.gene94631.t1 MTR_1g082690 27.915 566 341 8 13 576 48 548 2.03e-79 262
MS.gene94631.t1 MTR_5g075640 33.650 526 289 11 43 562 2 473 5.53e-79 260
MS.gene94631.t1 MTR_2g027410 32.421 475 285 10 21 494 24 463 2.78e-71 241
MS.gene94631.t1 MTR_2g027410 32.547 424 252 7 72 494 1 391 3.41e-62 214
MS.gene94631.t1 MTR_4g045767 28.227 581 347 18 20 580 2 532 2.15e-56 200
MS.gene94631.t1 MTR_4g011530 36.177 293 162 4 209 497 43 314 8.35e-54 191
MS.gene94631.t1 MTR_4g074190 27.383 493 312 9 26 500 6 470 1.98e-50 184
MS.gene94631.t1 MTR_1g035720 25.308 569 334 18 36 576 17 522 3.71e-48 177
MS.gene94631.t1 MTR_2g102730 34.843 287 170 3 212 497 24 294 6.14e-48 174
MS.gene94631.t1 MTR_4g074190 27.212 452 285 7 65 500 1 424 8.67e-46 170
MS.gene94631.t1 MTR_4g074190 27.045 440 275 9 26 447 6 417 3.30e-41 155
MS.gene94631.t1 MTR_2g010890 26.055 403 242 10 91 482 1 358 1.41e-31 128
MS.gene94631.t1 MTR_2g048375 41.290 155 72 5 462 609 1 143 1.58e-28 112
MS.gene94631.t1 MTR_1g105870 29.565 230 132 3 27 256 35 234 3.13e-21 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94631.t1 AT3G44820 63.761 654 211 11 1 634 1 648 0.0 824
MS.gene94631.t1 AT1G30440 45.455 594 302 8 6 583 9 596 0.0 529
MS.gene94631.t1 AT5G03250 41.030 602 308 11 6 594 9 576 1.17e-149 446
MS.gene94631.t1 AT5G13600 40.747 589 291 17 10 582 13 559 4.08e-141 424
MS.gene94631.t1 AT5G66560 37.651 664 321 14 13 601 9 654 2.84e-137 416
MS.gene94631.t1 AT3G50840 38.411 604 310 14 17 609 10 562 2.66e-130 395
MS.gene94631.t1 AT5G64330 34.366 710 357 15 6 619 35 731 1.33e-129 399
MS.gene94631.t1 AT5G66560 37.325 643 310 14 34 601 1 625 1.56e-127 390
MS.gene94631.t1 AT5G66560 39.613 568 292 12 67 601 66 615 4.48e-126 386
MS.gene94631.t1 AT5G64330 36.498 611 285 12 6 521 35 637 6.55e-124 382
MS.gene94631.t1 AT5G48800 35.802 567 316 9 23 581 41 567 1.65e-116 361
MS.gene94631.t1 AT3G50840 38.043 552 285 12 67 609 23 526 8.43e-116 356
MS.gene94631.t1 AT3G50840 38.043 552 285 12 67 609 23 526 8.43e-116 356
MS.gene94631.t1 AT5G03250 39.759 498 253 11 110 594 1 464 1.02e-111 344
MS.gene94631.t1 AT5G64330 35.456 581 272 12 36 521 6 578 3.37e-109 342
MS.gene94631.t1 AT3G08570 34.752 564 324 9 18 571 31 560 5.52e-108 339
MS.gene94631.t1 AT3G08660 34.938 561 299 12 18 571 31 532 5.48e-105 330
MS.gene94631.t1 AT5G67385 33.818 550 328 8 7 553 9 525 9.01e-103 325
MS.gene94631.t1 AT1G03010 33.014 627 366 13 21 623 7 603 1.44e-100 319
MS.gene94631.t1 AT1G03010 32.917 641 374 14 7 623 21 629 1.46e-100 320
MS.gene94631.t1 AT1G03010 32.748 626 369 12 21 623 34 630 3.96e-100 319
MS.gene94631.t1 AT2G14820 35.044 565 314 13 1 544 4 536 5.92e-100 318
MS.gene94631.t1 AT2G14820 35.044 565 314 13 1 544 4 536 5.92e-100 318
MS.gene94631.t1 AT2G30520 34.307 548 313 9 16 562 23 524 2.63e-98 313
MS.gene94631.t1 AT3G08660 34.570 512 274 10 67 571 15 472 4.95e-95 302
MS.gene94631.t1 AT5G10250 30.236 592 336 10 8 573 35 575 5.62e-93 300
MS.gene94631.t1 AT5G66560 36.531 490 237 10 13 446 9 480 1.36e-92 294
MS.gene94631.t1 AT5G67440 36.364 484 270 9 23 499 27 479 2.29e-92 297
MS.gene94631.t1 AT5G67440 36.364 484 270 9 23 499 27 479 2.29e-92 297
MS.gene94631.t1 AT2G47860 31.736 605 356 13 21 603 35 604 6.53e-92 297
MS.gene94631.t1 AT5G67385 33.333 513 306 8 44 553 1 480 7.21e-92 295
MS.gene94631.t1 AT5G67385 33.333 513 306 8 44 553 1 480 7.21e-92 295
MS.gene94631.t1 AT5G67385 33.333 513 306 8 44 553 1 480 7.21e-92 295
MS.gene94631.t1 AT5G67385 33.333 513 306 8 44 553 1 480 7.21e-92 295
MS.gene94631.t1 AT1G67900 37.600 500 270 7 21 494 24 507 1.36e-91 296
MS.gene94631.t1 AT1G67900 37.600 500 270 7 21 494 24 507 1.36e-91 296
MS.gene94631.t1 AT1G67900 37.600 500 270 7 21 494 24 507 1.36e-91 296
MS.gene94631.t1 AT1G67900 37.600 500 270 7 21 494 24 507 1.36e-91 296
MS.gene94631.t1 AT1G67900 37.600 500 270 7 21 494 24 507 1.36e-91 296
MS.gene94631.t1 AT1G67900 37.600 500 270 7 21 494 24 507 1.36e-91 296
MS.gene94631.t1 AT5G10250 30.293 581 335 10 8 573 35 560 4.43e-90 291
MS.gene94631.t1 AT2G30520 34.165 521 296 9 43 562 2 476 2.05e-89 288
MS.gene94631.t1 AT2G30520 34.165 521 296 9 43 562 2 476 2.05e-89 288
MS.gene94631.t1 AT2G47860 30.573 628 356 14 21 603 35 627 1.12e-86 284
MS.gene94631.t1 AT5G47800 35.010 477 275 9 24 494 27 474 2.03e-86 281
MS.gene94631.t1 AT5G47800 35.010 477 275 9 24 494 27 474 2.03e-86 281
MS.gene94631.t1 AT5G47800 35.010 477 275 9 24 494 27 474 2.03e-86 281
MS.gene94631.t1 AT5G67440 35.821 469 263 9 38 499 5 442 6.71e-86 279
MS.gene94631.t1 AT5G47800 35.010 477 275 9 24 494 140 587 6.49e-85 280
MS.gene94631.t1 AT4G37590 35.327 535 282 16 1 521 4 488 5.15e-83 272
MS.gene94631.t1 AT2G23050 34.519 478 249 9 33 503 37 457 6.96e-83 269
MS.gene94631.t1 AT4G31820 33.133 498 285 12 18 507 22 479 1.44e-82 271
MS.gene94631.t1 AT3G26490 32.054 521 294 9 21 508 24 517 6.83e-82 270
MS.gene94631.t1 AT3G26490 32.054 521 294 9 21 508 24 517 6.83e-82 270
MS.gene94631.t1 AT3G26490 32.054 521 294 9 21 508 24 517 6.83e-82 270
MS.gene94631.t1 AT3G49970 29.883 599 318 16 31 612 2 515 5.46e-74 246
MS.gene94631.t1 AT3G49970 29.883 599 318 16 31 612 2 515 5.46e-74 246
MS.gene94631.t1 AT4G31820 33.032 442 250 11 62 495 11 414 5.06e-72 241
MS.gene94631.t1 AT3G08660 32.648 438 236 10 18 447 31 417 1.45e-70 235
MS.gene94631.t1 AT2G47860 29.651 516 311 11 110 603 1 486 9.05e-66 224
MS.gene94631.t1 AT2G47860 29.651 516 311 11 110 603 1 486 9.05e-66 224
MS.gene94631.t1 AT3G26490 30.719 459 260 8 21 446 24 457 2.93e-64 220
MS.gene94631.t1 AT2G47860 31.839 446 246 10 21 445 35 443 6.47e-62 212
MS.gene94631.t1 AT2G23050 31.407 398 212 8 110 503 1 341 1.53e-57 198
MS.gene94631.t1 AT2G47860 30.213 470 247 11 21 446 35 467 5.00e-57 200
MS.gene94631.t1 AT3G19850 28.348 448 271 6 65 495 50 464 1.20e-54 196
MS.gene94631.t1 AT5G48130 25.424 590 370 16 17 590 33 568 6.87e-51 186
MS.gene94631.t1 AT1G52770 31.989 372 215 7 212 563 28 381 1.93e-50 181
MS.gene94631.t1 AT5G17580 27.347 490 296 10 25 502 7 448 4.29e-48 177
MS.gene94631.t1 AT5G17580 27.347 490 296 10 25 502 22 463 5.80e-48 177
MS.gene94631.t1 AT1G50280 27.376 442 275 11 65 490 16 427 6.71e-48 176
MS.gene94631.t1 AT1G50280 27.376 442 275 11 65 490 49 460 1.32e-47 175
MS.gene94631.t1 AT3G03510 28.736 435 232 9 75 502 4 367 1.34e-47 174
MS.gene94631.t1 AT3G22104 26.773 564 316 13 25 574 6 486 3.20e-47 174
MS.gene94631.t1 AT3G15570 34.114 299 166 5 212 497 29 309 5.93e-46 169
MS.gene94631.t1 AT3G22104 25.918 490 269 10 97 574 4 411 3.08e-37 144
MS.gene94631.t1 AT3G22104 25.918 490 269 10 97 574 4 411 3.08e-37 144
MS.gene94631.t1 AT3G22104 25.918 490 269 10 97 574 4 411 3.08e-37 144
MS.gene94631.t1 AT3G49900 31.111 180 107 5 396 569 214 382 3.88e-14 75.9
MS.gene94631.t1 AT3G49900 30.055 183 108 5 396 569 214 385 1.02e-12 71.2

Find 148 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCACCTGGGAAGCTTTC+TGG 0.046977 2.4:-14789337 MS.gene94631:CDS
TTTGGTAGGTTTAGTGATTC+TGG 0.090514 2.4:-14789073 MS.gene94631:intron
ATGGCACCTGCAAGGCTTTC+TGG 0.172793 2.4:+14787633 None:intergenic
GCAACAATCAAGAAAATTTC+AGG 0.212225 2.4:+14788119 None:intergenic
CGTTGATCAGAGGGTTCTTT+TGG 0.224328 2.4:-14787502 MS.gene94631:CDS
TGCACGGACCCGAGTTTATT+TGG 0.228486 2.4:-14787837 MS.gene94631:CDS
CTCCACCTGGGAAGCTTTCT+GGG 0.231623 2.4:-14789336 MS.gene94631:CDS
TCGAAACCCGTAACAGAATT+TGG 0.239506 2.4:+14788097 None:intergenic
GGCTGTTGTGCGCGAAAATC+AGG 0.242316 2.4:-14786646 MS.gene94631:CDS
GTTCTTCTCATAGGCATTCT+TGG 0.242500 2.4:+14788175 None:intergenic
CAACTGGAAAGATTGTATTT+TGG 0.263796 2.4:-14787946 MS.gene94631:CDS
TCAGGGTTTGAAGGTGGATA+TGG 0.270583 2.4:-14786628 MS.gene94631:CDS
GCCCGGGTGGAAGCATTCTT+TGG 0.292191 2.4:-14787782 MS.gene94631:CDS
TCAAGCTTGCAAGGAATCTT+TGG 0.294629 2.4:-14787385 MS.gene94631:CDS
ACAGAACGGTCGAGGGATTC+AGG 0.305257 2.4:+14786447 None:intergenic
CGTATTCGTCCGTCATTTCA+AGG 0.342271 2.4:+14788024 None:intergenic
CTTTCTGGGTTTCATCTTCA+AGG 0.343380 2.4:-14789322 MS.gene94631:CDS
AGCTGAAAATCTTCATTTAG+TGG 0.344621 2.4:-14787892 MS.gene94631:CDS
GCCAGGTCTCGGTAGGTGGC+AGG 0.366357 2.4:-14787586 MS.gene94631:CDS
GTGCCATAATGTATTATTCT+AGG 0.366832 2.4:-14787617 MS.gene94631:CDS
ACCTCGCGCACTGTGAGATT+TGG 0.370260 2.4:+14786533 None:intergenic
ATAGAATAGGCTCAGAGCTT+TGG 0.373664 2.4:+14787919 None:intergenic
TTGGTAGGTTTAGTGATTCT+GGG 0.376444 2.4:-14789072 MS.gene94631:intron
TTGTTGCCAAATTCTGTTAC+GGG 0.377436 2.4:-14788103 MS.gene94631:CDS
TTCTGTGTGTCTGGACTTGT+GGG 0.387255 2.4:+14786386 None:intergenic
GTCGATCGAGCAGGAACTGC+TGG 0.391220 2.4:+14786717 None:intergenic
CGGCTGCTTGCAAGGAAACT+CGG 0.391699 2.4:-14786504 MS.gene94631:CDS
CTTCCTAGAATAATACATTA+TGG 0.393701 2.4:+14787614 None:intergenic
GAATCTTTGGAGAGAAGAAT+AGG 0.393807 2.4:-14787372 MS.gene94631:CDS
GGCATTCTTGGATTCTTCAT+AGG 0.400386 2.4:+14788187 None:intergenic
ATGCGACCAGAAAGCCTTGC+AGG 0.402281 2.4:-14787639 MS.gene94631:CDS
GTGGTACTGGAAGAATTTCC+TGG 0.407573 2.4:-14788146 MS.gene94631:CDS
AATCTTTGGAGAGAAGAATA+GGG 0.409794 2.4:-14787371 MS.gene94631:CDS
TAAATACCGGCGCTAGGATT+CGG 0.414576 2.4:-14787752 MS.gene94631:CDS
AGCCGGATGTGTCAATGCTT+TGG 0.414661 2.4:-14786754 MS.gene94631:CDS
GAAACTTCTTCCTCAAAAGA+AGG 0.424762 2.4:-14787469 MS.gene94631:CDS
CTTTGGAACGGCATAAATAC+CGG 0.431590 2.4:-14787765 MS.gene94631:CDS
CATCATCATCTGAATCGTTA+AGG 0.434735 2.4:-14787185 MS.gene94631:CDS
TTTCCTCTTGTTTCAAAATG+TGG 0.437919 2.4:-14788224 MS.gene94631:CDS
TCGCTCGCATCGTCTTAATA+AGG 0.438767 2.4:+14787667 None:intergenic
GAGAAGAATAGGGATGCAAT+TGG 0.439069 2.4:-14787361 MS.gene94631:CDS
TTTAAACGCTCTAGCTATGA+TGG 0.440301 2.4:-14787862 MS.gene94631:CDS
TGCTTCAAAATGGCTCCACC+TGG 0.443870 2.4:-14789349 None:intergenic
ATTGTTGCCAAATTCTGTTA+CGG 0.444459 2.4:-14788104 MS.gene94631:CDS
GGTTGAACATCTGAAAATCT+AGG 0.453934 2.4:+14786468 None:intergenic
TTTCTGTGTGTCTGGACTTG+TGG 0.458759 2.4:+14786385 None:intergenic
GATATTACTGTGTCAATTGA+TGG 0.459358 2.4:-14789040 MS.gene94631:CDS
CTCATGCATCTCAAAATGAT+AGG 0.461872 2.4:-14786839 MS.gene94631:CDS
AAGTTGATAGATAGCTATAT+TGG 0.467102 2.4:-14787153 MS.gene94631:CDS
CCAGGTCTCGGTAGGTGGCA+GGG 0.473266 2.4:-14787585 MS.gene94631:CDS
AGCACTGGACATATATTTCA+AGG 0.477136 2.4:-14787031 MS.gene94631:intron
TATTCTAGGAAGCACTTGCC+AGG 0.478232 2.4:-14787603 MS.gene94631:CDS
AGGAAGCACTTGCCAGGTCT+CGG 0.483634 2.4:-14787597 MS.gene94631:CDS
TTCATCTTCAAGGTCATCAC+TGG 0.484382 2.4:-14789312 MS.gene94631:intron
ACACTTTGCAGGCTCATCCT+TGG 0.485150 2.4:-14786932 MS.gene94631:intron
GTTCTCCTCGGCTGCTTGCA+AGG 0.490219 2.4:-14786512 MS.gene94631:CDS
GAAGAACCTGACAGTGGTAC+TGG 0.491597 2.4:-14788159 MS.gene94631:CDS
CACTGTCAGGTTCTTCTCAT+AGG 0.491878 2.4:+14788166 None:intergenic
TGAAACCCAGAAAGCTTCCC+AGG 0.493717 2.4:+14789331 None:intergenic
CGGACCCGAGTTTATTTGGA+TGG 0.499303 2.4:-14787833 MS.gene94631:CDS
GGATGGCCGATGATGATGTA+TGG 0.500030 2.4:-14787816 MS.gene94631:CDS
GCCCGCTCGACTGATGCTCT+TGG 0.504243 2.4:+14786417 None:intergenic
GGCTGCTTGCAAGGAAACTC+GGG 0.504261 2.4:-14786503 MS.gene94631:CDS
ATCAAGCGATGAAGGAGAAA+AGG 0.512046 2.4:+14787218 None:intergenic
GCATCAGAATCTGCATAAGC+AGG 0.514844 2.4:+14787309 None:intergenic
CCCTGCCACCTACCGAGACC+TGG 0.517222 2.4:+14787585 None:intergenic
AAGTGCATACCTTGTGAAGA+TGG 0.517267 2.4:+14789008 None:intergenic
ACTGCTCGAGGTGGTACAGC+TGG 0.517379 2.4:-14786696 MS.gene94631:CDS
ATTCTTCCAGTACCACTGTC+AGG 0.520265 2.4:+14788153 None:intergenic
CATTTGAGAACAGCATTAGC+CGG 0.524224 2.4:-14786771 MS.gene94631:CDS
GTGTGGATACAGAACGGTCG+AGG 0.525813 2.4:+14786439 None:intergenic
TGACGGACTCTACCGAGCAC+TGG 0.526424 2.4:-14787046 MS.gene94631:CDS
TGATCAACGGTAGCATTAGC+AGG 0.527657 2.4:+14787516 None:intergenic
GCTTGCGGATCAAGCGATGA+AGG 0.528515 2.4:+14787210 None:intergenic
ACCAAGAGCATCAGTCGAGC+GGG 0.538088 2.4:-14786418 MS.gene94631:CDS
ACTCCGTAAGTACAAAATGA+TGG 0.539042 2.4:+14787253 None:intergenic
GAATGTTGATCAAGCTTGCA+AGG 0.540233 2.4:-14787394 MS.gene94631:CDS
GCGCGAAAATCAGGGTTTGA+AGG 0.547646 2.4:-14786637 MS.gene94631:CDS
TTCCAAAGAATGCTTCCACC+CGG 0.548167 2.4:+14787780 None:intergenic
TGGTACTGGAAGAATTTCCT+GGG 0.549040 2.4:-14788145 MS.gene94631:CDS
GTCCAAAGCATTGACACATC+CGG 0.549254 2.4:+14786752 None:intergenic
GACTTGAAGAACAACTCTGA+GGG 0.551619 2.4:+14786812 None:intergenic
TGTGTCTGGACTTGTGGGAA+CGG 0.555682 2.4:+14786391 None:intergenic
AAACTTCTTCCTCAAAAGAA+GGG 0.557294 2.4:-14787468 MS.gene94631:CDS
TCCAAAGAATGCTTCCACCC+GGG 0.563591 2.4:+14787781 None:intergenic
AGTTTCCTTGCAAGCAGCCG+AGG 0.563799 2.4:+14786507 None:intergenic
ATCGGCCATCCAAATAAACT+CGG 0.566431 2.4:+14787828 None:intergenic
ATGCAATGATCTCGATGACT+CGG 0.566672 2.4:+14787068 None:intergenic
GCTGTTGTGCGCGAAAATCA+GGG 0.569376 2.4:-14786645 MS.gene94631:CDS
ATGATCTCGATGACTCGGGA+AGG 0.569668 2.4:+14787073 None:intergenic
GAAGAAGTCCAAGTAAGAAA+CGG 0.570227 2.4:+14787433 None:intergenic
TAATGCTACCGTTGATCAGA+GGG 0.571026 2.4:-14787511 MS.gene94631:CDS
ACTTGCCAGGTCTCGGTAGG+TGG 0.572513 2.4:-14787590 MS.gene94631:CDS
CTCGACTGATGCTCTTGGTG+TGG 0.573680 2.4:+14786422 None:intergenic
TGCAATGATCTCGATGACTC+GGG 0.575045 2.4:+14787069 None:intergenic
CGCACTGTGAGATTTGGTCA+CGG 0.575053 2.4:+14786539 None:intergenic
CGAAAATCAGGGTTTGAAGG+TGG 0.575204 2.4:-14786634 MS.gene94631:CDS
CCTCGAGCAGTCGATCGAGC+AGG 0.575521 2.4:+14786708 None:intergenic
ATGACGGACGAATACGAAGA+AGG 0.579734 2.4:-14788017 MS.gene94631:CDS
TCTAGCTATGATGGCTTGCA+CGG 0.579879 2.4:-14787853 MS.gene94631:CDS
AGGTGGCAGGGTGGACAAAG+TGG 0.579980 2.4:-14787573 MS.gene94631:CDS
TGATCTCGATGACTCGGGAA+GGG 0.585868 2.4:+14787074 None:intergenic
CTAATGCTACCGTTGATCAG+AGG 0.588675 2.4:-14787512 MS.gene94631:CDS
AAACCACCACTCAGATTCTG+AGG 0.594051 2.4:+14787728 None:intergenic
CTGCATAAGCAGGAATGAGA+AGG 0.597034 2.4:+14787319 None:intergenic
TTCTCGTTATCAGAGAGCCA+AGG 0.599221 2.4:+14786915 None:intergenic
GGTGGAAGCATTCTTTGGAA+CGG 0.599897 2.4:-14787777 MS.gene94631:CDS
CACCAAGAGCATCAGTCGAG+CGG 0.602703 2.4:-14786419 MS.gene94631:CDS
GCTTCAAAATGGCTCCACCT+GGG 0.603801 2.4:-14789348 None:intergenic
GAGATGCATGAGCACATGCA+TGG 0.604027 2.4:+14786850 None:intergenic
TGAAATATATGTCCAGTGCT+CGG 0.604995 2.4:+14787034 None:intergenic
TGCAGAATACCTTGAAATGA+CGG 0.605457 2.4:-14788033 MS.gene94631:CDS
ACGGCATAAATACCGGCGCT+AGG 0.609139 2.4:-14787758 MS.gene94631:CDS
CCTGCTCGATCGACTGCTCG+AGG 0.610208 2.4:-14786708 MS.gene94631:CDS
AATTGTACAAAGAGACGGAT+GGG 0.612385 2.4:-14786670 MS.gene94631:CDS
CAAAAGAACCCTCTGATCAA+CGG 0.612626 2.4:+14787503 None:intergenic
ACCAAATCTCACAGTGCGCG+AGG 0.616133 2.4:-14786534 MS.gene94631:CDS
ATTAAGACGATGCGAGCGAG+AGG 0.617106 2.4:-14787663 MS.gene94631:CDS
GGAGAAATTGTACAAAGAGA+CGG 0.619598 2.4:-14786675 MS.gene94631:CDS
AAACTCCCATACATCATCAT+CGG 0.620072 2.4:+14787810 None:intergenic
GATAGAATGAGTACTAGAGT+CGG 0.620497 2.4:-14786606 MS.gene94631:CDS
GATGGCCGATGATGATGTAT+GGG 0.621720 2.4:-14787815 MS.gene94631:CDS
GGTCTCGGTAGGTGGCAGGG+TGG 0.629729 2.4:-14787582 MS.gene94631:CDS
ACAGTGCGCGAGGTTCTCCT+CGG 0.631135 2.4:-14786524 MS.gene94631:CDS
TGAGGTCCGAATCCTAGCGC+CGG 0.638429 2.4:+14787746 None:intergenic
AAATTGTACAAAGAGACGGA+TGG 0.641677 2.4:-14786671 MS.gene94631:CDS
CTCTTGGTGTGGATACAGAA+CGG 0.647151 2.4:+14786433 None:intergenic
AATACATTATGGCACCTGCA+AGG 0.648443 2.4:+14787625 None:intergenic
ATTGACACAGTAATATCACT+TGG 0.657084 2.4:+14789046 None:intergenic
TCGGCCATCCAAATAAACTC+GGG 0.657524 2.4:+14787829 None:intergenic
GGACCTCAGAATCTGAGTGG+TGG 0.657996 2.4:-14787731 MS.gene94631:CDS
AGACTTGAAGAACAACTCTG+AGG 0.663274 2.4:+14786811 None:intergenic
TGTCAATTTCCATCTTCACA+AGG 0.664191 2.4:-14789017 MS.gene94631:intron
TCAGATGATGATGATGCTTG+CGG 0.669592 2.4:+14787195 None:intergenic
AGCACTTGCCAGGTCTCGGT+AGG 0.675195 2.4:-14787593 MS.gene94631:CDS
TGTACAAAGAGACGGATGGG+TGG 0.680555 2.4:-14786667 MS.gene94631:CDS
GGATGTGTCAATGCTTTGGA+CGG 0.682521 2.4:-14786750 MS.gene94631:CDS
AACCCAGAAAGCTTCCCAGG+TGG 0.686788 2.4:+14789334 None:intergenic
GCTCGATCGACTGCTCGAGG+TGG 0.696171 2.4:-14786705 MS.gene94631:CDS
GGTACTGGAAGAATTTCCTG+GGG 0.699090 2.4:-14788144 MS.gene94631:CDS
ACTTGAAGAACAACTCTGAG+GGG 0.701967 2.4:+14786813 None:intergenic
TGTGGATACAGAACGGTCGA+GGG 0.703075 2.4:+14786440 None:intergenic
TTCGGACCTCAGAATCTGAG+TGG 0.703846 2.4:-14787734 MS.gene94631:CDS
AAGCGATGAAGGAGAAAAGG+CGG 0.715407 2.4:+14787221 None:intergenic
TCATCGAGATCATTGCATGA+CGG 0.715773 2.4:-14787063 MS.gene94631:CDS
CAAGGTATTCTGCAGCACAG+TGG 0.723725 2.4:+14788042 None:intergenic
CTATGAGAAGAACCTGACAG+TGG 0.742704 2.4:-14788165 MS.gene94631:CDS
GTACTGGAAGAATTTCCTGG+GGG 0.781656 2.4:-14788143 MS.gene94631:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAATTTATCATATCAAA+AGG + chr2.4:14787424-14787443 None:intergenic 15.0%
!! AATCAAAATAACAGTAAAAT+AGG + chr2.4:14786903-14786922 None:intergenic 15.0%
!! AGAATTCACTAAAATAAAAA+AGG - chr2.4:14789143-14789162 MS.gene94631:intron 15.0%
!! TATTATGAATAGATTATTAG+TGG + chr2.4:14786760-14786779 None:intergenic 15.0%
!! TATTCATAATAATTTGATAG+TGG - chr2.4:14786769-14786788 MS.gene94631:CDS 15.0%
!! TTGTTACATGAATTATTTAT+TGG - chr2.4:14786463-14786482 MS.gene94631:CDS 15.0%
!!! AAAACTTTTTTACATCAATA+GGG + chr2.4:14786934-14786953 None:intergenic 15.0%
!!! TAAAACTTTTTTACATCAAT+AGG + chr2.4:14786935-14786954 None:intergenic 15.0%
!!! TTTTTTTTTTCCTGTTTTTT+TGG - chr2.4:14786610-14786629 MS.gene94631:CDS 15.0%
!! AAACAAAATTCCAAAAAAAC+AGG + chr2.4:14786623-14786642 None:intergenic 20.0%
!! ACAAAAGAACAAAAATGAAT+AGG + chr2.4:14786837-14786856 None:intergenic 20.0%
!! GATATTGGAGAAAATTTATT+TGG - chr2.4:14787288-14787307 MS.gene94631:CDS 20.0%
!!! GTTTTTTTGGAATTTTGTTT+TGG - chr2.4:14786623-14786642 MS.gene94631:CDS 20.0%
! AATTACTTGTAATGTTGTCT+TGG - chr2.4:14787436-14787455 MS.gene94631:CDS 25.0%
! ATTGGAGAAAATTTATTTGG+AGG - chr2.4:14787291-14787310 MS.gene94631:CDS 25.0%
! CTTCCTAGAATAATACATTA+TGG + chr2.4:14788103-14788122 None:intergenic 25.0%
! TAGATTATTAGTGGAAGAAA+AGG + chr2.4:14786751-14786770 None:intergenic 25.0%
!!! AAGTTGATAGATAGCTATAT+TGG - chr2.4:14788561-14788580 MS.gene94631:intron 25.0%
!!! AGGTGAATATTTTGAGATAT+TGG - chr2.4:14787273-14787292 MS.gene94631:CDS 25.0%
!!! GAAAATGACATGTTTTTTAG+TGG - chr2.4:14786531-14786550 MS.gene94631:CDS 25.0%
!!! TTGGGATTTTTTTTCTTTTG+TGG - chr2.4:14786800-14786819 MS.gene94631:CDS 25.0%
!!! TTTTGGAATTTTGTTTTGGT+AGG - chr2.4:14786627-14786646 MS.gene94631:CDS 25.0%
!!! TTTTTGACTCTTTACATTTG+CGG - chr2.4:14787047-14787066 MS.gene94631:CDS 25.0%
AAACTTCTTCCTCAAAAGAA+GGG - chr2.4:14788246-14788265 MS.gene94631:intron 30.0%
AGCTGAAAATCTTCATTTAG+TGG - chr2.4:14787822-14787841 MS.gene94631:CDS 30.0%
AGTAAAATAGGTCACAAAGT+AGG + chr2.4:14786891-14786910 None:intergenic 30.0%
ATAAAAACATATTGCGCAAC+TGG - chr2.4:14787752-14787771 MS.gene94631:CDS 30.0%
ATTGACACAGTAATATCACT+TGG + chr2.4:14786671-14786690 None:intergenic 30.0%
ATTGATTGAAAATGTAGCTC+AGG + chr2.4:14788718-14788737 None:intergenic 30.0%
ATTGTGATCTCTAGTTAATG+AGG + chr2.4:14787117-14787136 None:intergenic 30.0%
ATTGTTGCCAAATTCTGTTA+CGG - chr2.4:14787610-14787629 MS.gene94631:CDS 30.0%
GATATTACTGTGTCAATTGA+TGG - chr2.4:14786674-14786693 MS.gene94631:CDS 30.0%
GCAACAATCAAGAAAATTTC+AGG + chr2.4:14787598-14787617 None:intergenic 30.0%
GTGCCATAATGTATTATTCT+AGG - chr2.4:14788097-14788116 MS.gene94631:CDS 30.0%
GTTATGTGGCTACAATTAAA+AGG - chr2.4:14787247-14787266 MS.gene94631:CDS 30.0%
TATAAAGTCACACGTATGAT+TGG + chr2.4:14786977-14786996 None:intergenic 30.0%
TCAAAATGTGGAAAAATTGC+TGG - chr2.4:14787502-14787521 MS.gene94631:CDS 30.0%
TGGCTACAATTAAAAGGAAA+AGG - chr2.4:14787253-14787272 MS.gene94631:CDS 30.0%
TTGTGATCTCTAGTTAATGA+GGG + chr2.4:14787116-14787135 None:intergenic 30.0%
! AAAGATTTTCCCTTCTTTTG+AGG + chr2.4:14788258-14788277 None:intergenic 30.0%
! AATCTTTGGAGAGAAGAATA+GGG - chr2.4:14788343-14788362 MS.gene94631:intron 30.0%
! CAACTGGAAAGATTGTATTT+TGG - chr2.4:14787768-14787787 MS.gene94631:CDS 30.0%
! TGTCCATCATTTTGTACTTA+CGG - chr2.4:14788458-14788477 MS.gene94631:intron 30.0%
! TTTCCTCTTGTTTCAAAATG+TGG - chr2.4:14787490-14787509 MS.gene94631:CDS 30.0%
! TTTTCAGCTCTTGATAGAAT+AGG + chr2.4:14787811-14787830 None:intergenic 30.0%
!! AGTTGCGCAATATGTTTTTA+TGG + chr2.4:14787753-14787772 None:intergenic 30.0%
!! TTGATAGTGGAATAGTTGTT+GGG - chr2.4:14786782-14786801 MS.gene94631:CDS 30.0%
!! TTTGATAGTGGAATAGTTGT+TGG - chr2.4:14786781-14786800 MS.gene94631:CDS 30.0%
!!! TTTCCACATTTTGAAACAAG+AGG + chr2.4:14787496-14787515 None:intergenic 30.0%
AAACTCCCATACATCATCAT+CGG + chr2.4:14787907-14787926 None:intergenic 35.0%
AAATTGTACAAAGAGACGGA+TGG - chr2.4:14789043-14789062 MS.gene94631:CDS 35.0%
AATTGTACAAAGAGACGGAT+GGG - chr2.4:14789044-14789063 MS.gene94631:CDS 35.0%
ACTCCGTAAGTACAAAATGA+TGG + chr2.4:14788464-14788483 None:intergenic 35.0%
AGAAAAACTTTCTGTGTGTC+TGG + chr2.4:14789340-14789359 None:intergenic 35.0%
AGTTGCATGTATGTATGACT+TGG + chr2.4:14786560-14786579 None:intergenic 35.0%
ATTTGCACACGGTCAAATAA+GGG - chr2.4:14787351-14787370 MS.gene94631:CDS 35.0%
CATCATCATCTGAATCGTTA+AGG - chr2.4:14788529-14788548 MS.gene94631:intron 35.0%
CTCATGCATCTCAAAATGAT+AGG - chr2.4:14788875-14788894 MS.gene94631:intron 35.0%
GAAACTTCTTCCTCAAAAGA+AGG - chr2.4:14788245-14788264 MS.gene94631:intron 35.0%
GAAGAAGTCCAAGTAAGAAA+CGG + chr2.4:14788284-14788303 None:intergenic 35.0%
GAGAAAATTTATTTGGAGGC+TGG - chr2.4:14787295-14787314 MS.gene94631:CDS 35.0%
GATAGAATGAGTACTAGAGT+CGG - chr2.4:14789108-14789127 MS.gene94631:intron 35.0%
GGAGAAATTGTACAAAGAGA+CGG - chr2.4:14789039-14789058 MS.gene94631:CDS 35.0%
GGTTGAACATCTGAAAATCT+AGG + chr2.4:14789249-14789268 None:intergenic 35.0%
TATTTGCACACGGTCAAATA+AGG - chr2.4:14787350-14787369 MS.gene94631:CDS 35.0%
TGAAATATATGTCCAGTGCT+CGG + chr2.4:14788683-14788702 None:intergenic 35.0%
TGCAGAATACCTTGAAATGA+CGG - chr2.4:14787681-14787700 MS.gene94631:CDS 35.0%
TGTCAATTTCCATCTTCACA+AGG - chr2.4:14786697-14786716 MS.gene94631:CDS 35.0%
TTGGTAGGTTTAGTGATTCT+GGG - chr2.4:14786642-14786661 MS.gene94631:CDS 35.0%
TTGTTGCCAAATTCTGTTAC+GGG - chr2.4:14787611-14787630 MS.gene94631:CDS 35.0%
TTTAAACGCTCTAGCTATGA+TGG - chr2.4:14787852-14787871 MS.gene94631:CDS 35.0%
TTTGGTAGGTTTAGTGATTC+TGG - chr2.4:14786641-14786660 MS.gene94631:CDS 35.0%
! AGCACTGGACATATATTTCA+AGG - chr2.4:14788683-14788702 MS.gene94631:intron 35.0%
! CAAAGTAGGAGCACATTAAT+TGG + chr2.4:14786877-14786896 None:intergenic 35.0%
! GAATCTTTGGAGAGAAGAAT+AGG - chr2.4:14788342-14788361 MS.gene94631:intron 35.0%
!! ATGCATGGATTGAGAGTTTT+TGG + chr2.4:14788852-14788871 None:intergenic 35.0%
!! TCTTTTTGCCGTTTCTTACT+TGG - chr2.4:14788273-14788292 MS.gene94631:intron 35.0%
!!! CTTCTGTTTTGGAAGTTATG+TGG - chr2.4:14787233-14787252 MS.gene94631:CDS 35.0%
AAGAGGAAACTGCAGTTTCA+CGG + chr2.4:14787479-14787498 None:intergenic 40.0%
AAGTGCATACCTTGTGAAGA+TGG + chr2.4:14786709-14786728 None:intergenic 40.0%
AATACATTATGGCACCTGCA+AGG + chr2.4:14788092-14788111 None:intergenic 40.0%
AATTCCCGCATATTTGCACA+CGG - chr2.4:14787340-14787359 MS.gene94631:CDS 40.0%
ACTTGAAGAACAACTCTGAG+GGG + chr2.4:14788904-14788923 None:intergenic 40.0%
AGACTTGAAGAACAACTCTG+AGG + chr2.4:14788906-14788925 None:intergenic 40.0%
ATAGAATAGGCTCAGAGCTT+TGG + chr2.4:14787798-14787817 None:intergenic 40.0%
ATCAAGCGATGAAGGAGAAA+AGG + chr2.4:14788499-14788518 None:intergenic 40.0%
ATCGGCCATCCAAATAAACT+CGG + chr2.4:14787889-14787908 None:intergenic 40.0%
ATGCAATGATCTCGATGACT+CGG + chr2.4:14788649-14788668 None:intergenic 40.0%
CAAAAGAACCCTCTGATCAA+CGG + chr2.4:14788214-14788233 None:intergenic 40.0%
CATTTGAGAACAGCATTAGC+CGG - chr2.4:14788943-14788962 MS.gene94631:intron 40.0%
CTTTCTGGGTTTCATCTTCA+AGG - chr2.4:14786392-14786411 MS.gene94631:CDS 40.0%
GAATGTTGATCAAGCTTGCA+AGG - chr2.4:14788320-14788339 MS.gene94631:intron 40.0%
GACTTGAAGAACAACTCTGA+GGG + chr2.4:14788905-14788924 None:intergenic 40.0%
GAGAAGAATAGGGATGCAAT+TGG - chr2.4:14788353-14788372 MS.gene94631:intron 40.0%
GGCATTCTTGGATTCTTCAT+AGG + chr2.4:14787530-14787549 None:intergenic 40.0%
GTTCTTCTCATAGGCATTCT+TGG + chr2.4:14787542-14787561 None:intergenic 40.0%
TAAGGGGAATTTACGCGAAA+CGG - chr2.4:14787368-14787387 MS.gene94631:CDS 40.0%
TAATGCTACCGTTGATCAGA+GGG - chr2.4:14788203-14788222 MS.gene94631:CDS 40.0%
TCAAGCTTGCAAGGAATCTT+TGG - chr2.4:14788329-14788348 MS.gene94631:intron 40.0%
TCATCGAGATCATTGCATGA+CGG - chr2.4:14788651-14788670 MS.gene94631:intron 40.0%
TCGAAACCCGTAACAGAATT+TGG + chr2.4:14787620-14787639 None:intergenic 40.0%
TTCATCTTCAAGGTCATCAC+TGG - chr2.4:14786402-14786421 MS.gene94631:CDS 40.0%
TTTGACCGTGTGCAAATATG+CGG + chr2.4:14787348-14787367 None:intergenic 40.0%
TTTGCACACGGTCAAATAAG+GGG - chr2.4:14787352-14787371 MS.gene94631:CDS 40.0%
! GTTCGCTTGATCTTCTGTTT+TGG - chr2.4:14787222-14787241 MS.gene94631:CDS 40.0%
! TCAGATGATGATGATGCTTG+CGG + chr2.4:14788522-14788541 None:intergenic 40.0%
! TGGTACTGGAAGAATTTCCT+GGG - chr2.4:14787569-14787588 MS.gene94631:CDS 40.0%
!! CTTTGGAACGGCATAAATAC+CGG - chr2.4:14787949-14787968 MS.gene94631:CDS 40.0%
AAACCACCACTCAGATTCTG+AGG + chr2.4:14787989-14788008 None:intergenic 45.0%
AAGAAAATTTCAGGACCCCC+AGG + chr2.4:14787589-14787608 None:intergenic 45.0%
AAGCGATGAAGGAGAAAAGG+CGG + chr2.4:14788496-14788515 None:intergenic 45.0%
ATTCTTCCAGTACCACTGTC+AGG + chr2.4:14787564-14787583 None:intergenic 45.0%
CACTGTCAGGTTCTTCTCAT+AGG + chr2.4:14787551-14787570 None:intergenic 45.0%
CGAAAATCAGGGTTTGAAGG+TGG - chr2.4:14789080-14789099 MS.gene94631:intron 45.0%
CGTATTCGTCCGTCATTTCA+AGG + chr2.4:14787693-14787712 None:intergenic 45.0%
CTAATGCTACCGTTGATCAG+AGG - chr2.4:14788202-14788221 MS.gene94631:CDS 45.0%
CTATGAGAAGAACCTGACAG+TGG - chr2.4:14787549-14787568 MS.gene94631:CDS 45.0%
CTGCATAAGCAGGAATGAGA+AGG + chr2.4:14788398-14788417 None:intergenic 45.0%
GAATGCTTACGACACTTTGC+AGG - chr2.4:14788771-14788790 MS.gene94631:intron 45.0%
GCATCAGAATCTGCATAAGC+AGG + chr2.4:14788408-14788427 None:intergenic 45.0%
GTACTGGAAGAATTTCCTGG+GGG - chr2.4:14787571-14787590 MS.gene94631:CDS 45.0%
TAAATACCGGCGCTAGGATT+CGG - chr2.4:14787962-14787981 MS.gene94631:CDS 45.0%
TCAGGGTTTGAAGGTGGATA+TGG - chr2.4:14789086-14789105 MS.gene94631:intron 45.0%
TCGCTCGCATCGTCTTAATA+AGG + chr2.4:14788050-14788069 None:intergenic 45.0%
TCGGCCATCCAAATAAACTC+GGG + chr2.4:14787888-14787907 None:intergenic 45.0%
TGATCAACGGTAGCATTAGC+AGG + chr2.4:14788201-14788220 None:intergenic 45.0%
TGCAATGATCTCGATGACTC+GGG + chr2.4:14788648-14788667 None:intergenic 45.0%
TTCCAAAGAATGCTTCCACC+CGG + chr2.4:14787937-14787956 None:intergenic 45.0%
TTCTCGTTATCAGAGAGCCA+AGG + chr2.4:14788802-14788821 None:intergenic 45.0%
TTCTGTGTGTCTGGACTTGT+GGG + chr2.4:14789331-14789350 None:intergenic 45.0%
TTGACCGTGTGCAAATATGC+GGG + chr2.4:14787347-14787366 None:intergenic 45.0%
TTTCTGTGTGTCTGGACTTG+TGG + chr2.4:14789332-14789351 None:intergenic 45.0%
! CGTTGATCAGAGGGTTCTTT+TGG - chr2.4:14788212-14788231 MS.gene94631:CDS 45.0%
! CTCTTGGTGTGGATACAGAA+CGG + chr2.4:14789284-14789303 None:intergenic 45.0%
! GATGGCCGATGATGATGTAT+GGG - chr2.4:14787899-14787918 MS.gene94631:CDS 45.0%
! GGATGTGTCAATGCTTTGGA+CGG - chr2.4:14788964-14788983 MS.gene94631:intron 45.0%
! GGTACTGGAAGAATTTCCTG+GGG - chr2.4:14787570-14787589 MS.gene94631:CDS 45.0%
! GTGGTACTGGAAGAATTTCC+TGG - chr2.4:14787568-14787587 MS.gene94631:CDS 45.0%
! TCTAGCTATGATGGCTTGCA+CGG - chr2.4:14787861-14787880 MS.gene94631:CDS 45.0%
!! ATGACGGACGAATACGAAGA+AGG - chr2.4:14787697-14787716 MS.gene94631:CDS 45.0%
!! GCAAGAGCACGTAACTTTTC+TGG + chr2.4:14788615-14788634 None:intergenic 45.0%
!! GGTGGAAGCATTCTTTGGAA+CGG - chr2.4:14787937-14787956 MS.gene94631:CDS 45.0%
!! GTCCAAAGCATTGACACATC+CGG + chr2.4:14788965-14788984 None:intergenic 45.0%
!! TATTCTAGGAAGCACTTGCC+AGG - chr2.4:14788111-14788130 MS.gene94631:CDS 45.0%
ACACTTTGCAGGCTCATCCT+TGG - chr2.4:14788782-14788801 MS.gene94631:intron 50.0%
AGCCGGATGTGTCAATGCTT+TGG - chr2.4:14788960-14788979 MS.gene94631:intron 50.0%
ATTAAGACGATGCGAGCGAG+AGG - chr2.4:14788051-14788070 MS.gene94631:CDS 50.0%
CGGACCCGAGTTTATTTGGA+TGG - chr2.4:14787881-14787900 MS.gene94631:CDS 50.0%
GAAGAACCTGACAGTGGTAC+TGG - chr2.4:14787555-14787574 MS.gene94631:CDS 50.0%
GAGATGCATGAGCACATGCA+TGG + chr2.4:14788867-14788886 None:intergenic 50.0%
GCGCGAAAATCAGGGTTTGA+AGG - chr2.4:14789077-14789096 MS.gene94631:intron 50.0%
GCTGTTGTGCGCGAAAATCA+GGG - chr2.4:14789069-14789088 MS.gene94631:intron 50.0%
TCCAAAGAATGCTTCCACCC+GGG + chr2.4:14787936-14787955 None:intergenic 50.0%
TGAAACCCAGAAAGCTTCCC+AGG + chr2.4:14786386-14786405 None:intergenic 50.0%
TGCACGGACCCGAGTTTATT+TGG - chr2.4:14787877-14787896 MS.gene94631:CDS 50.0%
TGTACAAAGAGACGGATGGG+TGG - chr2.4:14789047-14789066 MS.gene94631:CDS 50.0%
TGTGGATACAGAACGGTCGA+GGG + chr2.4:14789277-14789296 None:intergenic 50.0%
TGTGTCTGGACTTGTGGGAA+CGG + chr2.4:14789326-14789345 None:intergenic 50.0%
TTCGGACCTCAGAATCTGAG+TGG - chr2.4:14787980-14787999 MS.gene94631:CDS 50.0%
! ATGATCTCGATGACTCGGGA+AGG + chr2.4:14788644-14788663 None:intergenic 50.0%
! CAAGGTATTCTGCAGCACAG+TGG + chr2.4:14787675-14787694 None:intergenic 50.0%
! CGCACTGTGAGATTTGGTCA+CGG + chr2.4:14789178-14789197 None:intergenic 50.0%
! GGATGGCCGATGATGATGTA+TGG - chr2.4:14787898-14787917 MS.gene94631:CDS 50.0%
! GTATGGGAGTTTTCAGAGCC+CGG - chr2.4:14787915-14787934 MS.gene94631:CDS 50.0%
! TATGGGAGTTTTCAGAGCCC+GGG - chr2.4:14787916-14787935 MS.gene94631:CDS 50.0%
! TGATCTCGATGACTCGGGAA+GGG + chr2.4:14788643-14788662 None:intergenic 50.0%
AACCCAGAAAGCTTCCCAGG+TGG + chr2.4:14786383-14786402 None:intergenic 55.0%
ACAGAACGGTCGAGGGATTC+AGG + chr2.4:14789270-14789289 None:intergenic 55.0%
ACCAAATCTCACAGTGCGCG+AGG - chr2.4:14789180-14789199 MS.gene94631:intron 55.0%
ACCTCGCGCACTGTGAGATT+TGG + chr2.4:14789184-14789203 None:intergenic 55.0%
ACGGCATAAATACCGGCGCT+AGG - chr2.4:14787956-14787975 MS.gene94631:CDS 55.0%
AGTTTCCTTGCAAGCAGCCG+AGG + chr2.4:14789210-14789229 None:intergenic 55.0%
ATGCGACCAGAAAGCCTTGC+AGG - chr2.4:14788075-14788094 MS.gene94631:CDS 55.0%
ATGGCACCTGCAAGGCTTTC+TGG + chr2.4:14788084-14788103 None:intergenic 55.0%
CGGCTGCTTGCAAGGAAACT+CGG - chr2.4:14789210-14789229 MS.gene94631:intron 55.0%
CTCCACCTGGGAAGCTTTCT+GGG - chr2.4:14786378-14786397 MS.gene94631:CDS 55.0%
CTCGACTGATGCTCTTGGTG+TGG + chr2.4:14789295-14789314 None:intergenic 55.0%
GCTTGCGGATCAAGCGATGA+AGG + chr2.4:14788507-14788526 None:intergenic 55.0%
GGACCTCAGAATCTGAGTGG+TGG - chr2.4:14787983-14788002 MS.gene94631:CDS 55.0%
GGCTGCTTGCAAGGAAACTC+GGG - chr2.4:14789211-14789230 MS.gene94631:intron 55.0%
GGCTGTTGTGCGCGAAAATC+AGG - chr2.4:14789068-14789087 MS.gene94631:CDS 55.0%
GTGTGGATACAGAACGGTCG+AGG + chr2.4:14789278-14789297 None:intergenic 55.0%
!! ACCAAGAGCATCAGTCGAGC+GGG - chr2.4:14789296-14789315 MS.gene94631:intron 55.0%
!! AGGAAGCACTTGCCAGGTCT+CGG - chr2.4:14788117-14788136 MS.gene94631:CDS 55.0%
!! CACCAAGAGCATCAGTCGAG+CGG - chr2.4:14789295-14789314 MS.gene94631:intron 55.0%
ACAGTGCGCGAGGTTCTCCT+CGG - chr2.4:14789190-14789209 MS.gene94631:intron 60.0%
ACTGCTCGAGGTGGTACAGC+TGG - chr2.4:14789018-14789037 MS.gene94631:CDS 60.0%
ACTTGCCAGGTCTCGGTAGG+TGG - chr2.4:14788124-14788143 MS.gene94631:CDS 60.0%
AGCACTTGCCAGGTCTCGGT+AGG - chr2.4:14788121-14788140 MS.gene94631:CDS 60.0%
AGGTGGCAGGGTGGACAAAG+TGG - chr2.4:14788141-14788160 MS.gene94631:CDS 60.0%
GCTCCACCTGGGAAGCTTTC+TGG - chr2.4:14786377-14786396 MS.gene94631:CDS 60.0%
GTCGATCGAGCAGGAACTGC+TGG + chr2.4:14789000-14789019 None:intergenic 60.0%
GTTCTCCTCGGCTGCTTGCA+AGG - chr2.4:14789202-14789221 MS.gene94631:intron 60.0%
TGAGGTCCGAATCCTAGCGC+CGG + chr2.4:14787971-14787990 None:intergenic 60.0%
!! GCCCGGGTGGAAGCATTCTT+TGG - chr2.4:14787932-14787951 MS.gene94631:CDS 60.0%
!! TGACGGACTCTACCGAGCAC+TGG - chr2.4:14788668-14788687 MS.gene94631:intron 60.0%
CCAGGTCTCGGTAGGTGGCA+GGG - chr2.4:14788129-14788148 MS.gene94631:CDS 65.0%
CCTCGAGCAGTCGATCGAGC+AGG + chr2.4:14789009-14789028 None:intergenic 65.0%
CCTGCTCGATCGACTGCTCG+AGG - chr2.4:14789006-14789025 MS.gene94631:intron 65.0%
GCCCGCTCGACTGATGCTCT+TGG + chr2.4:14789300-14789319 None:intergenic 65.0%
GCTCGATCGACTGCTCGAGG+TGG - chr2.4:14789009-14789028 MS.gene94631:intron 65.0%
! GGGAGTTTTCAGAGCCCGGG+TGG - chr2.4:14787919-14787938 MS.gene94631:CDS 65.0%
CCCTGCCACCTACCGAGACC+TGG + chr2.4:14788132-14788151 None:intergenic 70.0%
GCCAGGTCTCGGTAGGTGGC+AGG - chr2.4:14788128-14788147 MS.gene94631:CDS 70.0%
GGTCTCGGTAGGTGGCAGGG+TGG - chr2.4:14788132-14788151 MS.gene94631:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 14786374 14789362 14786374 ID=MS.gene94631
chr2.4 mRNA 14786374 14789362 14786374 ID=MS.gene94631.t1;Parent=MS.gene94631
chr2.4 exon 14789313 14789362 14789313 ID=MS.gene94631.t1.exon1;Parent=MS.gene94631.t1
chr2.4 CDS 14789313 14789362 14789313 ID=cds.MS.gene94631.t1;Parent=MS.gene94631.t1
chr2.4 exon 14789018 14789087 14789018 ID=MS.gene94631.t1.exon2;Parent=MS.gene94631.t1
chr2.4 CDS 14789018 14789087 14789018 ID=cds.MS.gene94631.t1;Parent=MS.gene94631.t1
chr2.4 exon 14787032 14788246 14787032 ID=MS.gene94631.t1.exon3;Parent=MS.gene94631.t1
chr2.4 CDS 14787032 14788246 14787032 ID=cds.MS.gene94631.t1;Parent=MS.gene94631.t1
chr2.4 exon 14786374 14786943 14786374 ID=MS.gene94631.t1.exon4;Parent=MS.gene94631.t1
chr2.4 CDS 14786374 14786943 14786374 ID=cds.MS.gene94631.t1;Parent=MS.gene94631.t1
Gene Sequence

>MS.gene94631

ATGGCTCCACCTGGGAAGCTTTCTGGGTTTCATCTTCAAGGTCATCACTGGTATTTTCTTTCTTTCTCTAAACTTTTTTTATTATTTTTTTGTTACATGAATTATTTATTGGTCTTTTCAGTTGCATTTTCTGTGATGATCACTTTGAAATTTGTAAGAAAATGACATGTTTTTTAGTGGAATCCAAGTCATACATACATGCAACTTTATAGTTTTAAAATAGATTTTTATGTGATTTTTTTTTTTCCTGTTTTTTTGGAATTTTGTTTTGGTAGGTTTAGTGATTCTGGGTTGCCAAGTGATATTACTGTGTCAATTGATGGTGTCAATTTCCATCTTCACAAGGTATGCACTTTCATTTCATCATTCTTGTTCCTTTTCTTCCACTAATAATCTATTCATAATAATTTGATAGTGGAATAGTTGTTGGGATTTTTTTTCTTTTGTGGTTCTAGTTTATCCTATTCATTTTTGTTCTTTTGTTTTTAGTTTGATTCAAACCAATTAATGTGCTCCTACTTTGTGACCTATTTTACTGTTATTTTGATTTGTTCTAACCCTATTGATGTAAAAAAGTTTTATATTGTCTGCACATCACAACCAATCATACGTGTGACTTTATAAACAGTTATGATTGAAGTTAAATGTTTTTGACTCTTTACAAAGTTAAATGTTTTTGACTCTTTACATTTGCGGTGTATATGAATTAAATACGTATTTAATTGTAGAGACTATGAATCCCTCATTAACTAGAGATCACAATTAAGTTTCTCTACTTCATTGCAGTTATGTTATTGCTAGTTCTTAATTGTCTAGTTAATGATGAAGCTAACATTTTAAATGCATTAGTTCGCTTGATCTTCTGTTTTGGAAGTTATGTGGCTACAATTAAAAGGAAAAGGTGAATATTTTGAGATATTGGAGAAAATTTATTTGGAGGCTGGTTTTCTCTTTGTTTCGATTTTGAATTCCCGCATATTTGCACACGGTCAAATAAGGGGAATTTACGCGAAACGGATCTTTTTATGCGATAGTTGTACTGTTATGCCTTTTGATATGATAAATTACTTGTAATGTTGTCTTGGAGTCTGAGTAAGATATGCCGTGAAACTGCAGTTTCCTCTTGTTTCAAAATGTGGAAAAATTGCTGGTACCTATGAAGAATCCAAGAATGCCTATGAGAAGAACCTGACAGTGGTACTGGAAGAATTTCCTGGGGGTCCTGAAATTTTCTTGATTGTTGCCAAATTCTGTTACGGGTTTCGAGTAGAGCTGACAGCGAAAAATGTAGTGTTAGTCCACTGTGCTGCAGAATACCTTGAAATGACGGACGAATACGAAGAAGGCAACTTGTTGACAAAGTCAGAGAGCTTTTTCCATAAAAACATATTGCGCAACTGGAAAGATTGTATTTTGGCTCTCCAAAGCTCTGAGCCTATTCTATCAAGAGCTGAAAATCTTCATTTAGTGGATAAGTGTTTAAACGCTCTAGCTATGATGGCTTGCACGGACCCGAGTTTATTTGGATGGCCGATGATGATGTATGGGAGTTTTCAGAGCCCGGGTGGAAGCATTCTTTGGAACGGCATAAATACCGGCGCTAGGATTCGGACCTCAGAATCTGAGTGGTGGTTTGAAGACATCTCATATCTCAGTGTCAGATTGTTTGAGAGCCTTATTAAGACGATGCGAGCGAGAGGTATGCGACCAGAAAGCCTTGCAGGTGCCATAATGTATTATTCTAGGAAGCACTTGCCAGGTCTCGGTAGGTGGCAGGGTGGACAAAGTGGCAAAACAAGAACAGTTGCAAGTTTTAGTTTGACGCCTGCTAATGCTACCGTTGATCAGAGGGTTCTTTTGGAAAGCATTGAGAAACTTCTTCCTCAAAAGAAGGGAAAATCTTTTTGCCGTTTCTTACTTGGACTTCTTCGTGTAGCTTCGATATTGAATGTTGATCAAGCTTGCAAGGAATCTTTGGAGAGAAGAATAGGGATGCAATTGGAACTTGCAACATTAGATAGCCTTCTCATTCCTGCTTATGCAGATTCTGATGCATTGTATAACACAGATTGTATTGAACATATTGTCCATCATTTTGTACTTACGGAGTCAAATTTAACCGCCTTTTCTCCTTCATCGCTTGATCCGCAAGCATCATCATCATCTGAATCGTTAAGGAAAGTTGCGAAGTTGATAGATAGCTATATTGGCGAAATTGCGTCTGATGTTAATTTAAAACCAGAAAAGTTACGTGCTCTTGCACAAGCCCTTCCCGAGTCATCGAGATCATTGCATGACGGACTCTACCGAGCACTGGACATATATTTCAAGGTTTGATTTTCCTGAGCTACATTTTCAATCAATTGCTAATCTGTGATCATGAATTGTTAGTTTGATGAATGCTTACGACACTTTGCAGGCTCATCCTTGGCTCTCTGATAACGAGAAAGAAGAAATATGCAACATCATTGATTACCAAAAACTCTCAATCCATGCATGTGCTCATGCATCTCAAAATGATAGGTTACCCCTCAGAGTTGTTCTTCAAGTCTTATTCTTTGAACAGCTGCATTTGAGAACAGCATTAGCCGGATGTGTCAATGCTTTGGACGGTGAAAGCGCTCCAGCAGTTCCTGCTCGATCGACTGCTCGAGGTGGTACAGCTGGAGAAATTGTACAAAGAGACGGATGGGTGGCTGTTGTGCGCGAAAATCAGGGTTTGAAGGTGGATATGGATAGAATGAGTACTAGAGTCGGAGAACTTGAAGAAGAATTCACTAAAATAAAAAAGGAAATGAAAACCGTGACCAAATCTCACAGTGCGCGAGGTTCTCCTCGGCTGCTTGCAAGGAAACTCGGGTGCAAGCTTGTTCCTAGATTTTCAGATGTTCAACCTGAATCCCTCGACCGTTCTGTATCCACACCAAGAGCATCAGTCGAGCGGGCACGCCGTTCCCACAAGTCCAGACACACAGAAAGTTTTTCTTGA
Protein sequence

>MS.gene94631.t1

MAPPGKLSGFHLQGHHWFSDSGLPSDITVSIDGVNFHLHKFPLVSKCGKIAGTYEESKNAYEKNLTVVLEEFPGGPEIFLIVAKFCYGFRVELTAKNVVLVHCAAEYLEMTDEYEEGNLLTKSESFFHKNILRNWKDCILALQSSEPILSRAENLHLVDKCLNALAMMACTDPSLFGWPMMMYGSFQSPGGSILWNGINTGARIRTSESEWWFEDISYLSVRLFESLIKTMRARGMRPESLAGAIMYYSRKHLPGLGRWQGGQSGKTRTVASFSLTPANATVDQRVLLESIEKLLPQKKGKSFCRFLLGLLRVASILNVDQACKESLERRIGMQLELATLDSLLIPAYADSDALYNTDCIEHIVHHFVLTESNLTAFSPSSLDPQASSSSESLRKVAKLIDSYIGEIASDVNLKPEKLRALAQALPESSRSLHDGLYRALDIYFKAHPWLSDNEKEEICNIIDYQKLSIHACAHASQNDRLPLRVVLQVLFFEQLHLRTALAGCVNALDGESAPAVPARSTARGGTAGEIVQRDGWVAVVRENQGLKVDMDRMSTRVGELEEEFTKIKKEMKTVTKSHSARGSPRLLARKLGCKLVPRFSDVQPESLDRSVSTPRASVERARRSHKSRHTESFS