AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24620.t1 MTR_1g064060 100.000 328 0 0 1 328 1 328 0.0 679
MS.gene24620.t1 MTR_4g461070 96.341 328 12 0 1 328 1 328 0.0 659
MS.gene24620.t1 MTR_1g064060 98.997 299 3 0 1 299 1 299 0.0 616
MS.gene24620.t1 MTR_3g112040 25.538 325 210 14 14 326 29 333 3.36e-12 67.0
MS.gene24620.t1 MTR_3g081400 63.636 44 13 1 263 306 34 74 2.13e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24620.t1 AT5G03300 83.385 325 54 0 4 328 8 332 0.0 580
MS.gene24620.t1 AT3G09820 82.515 326 57 0 3 328 6 331 0.0 570
MS.gene24620.t1 AT5G03300 83.871 279 45 0 50 328 1 279 2.00e-180 500
MS.gene24620.t1 AT5G03300 83.871 279 45 0 50 328 1 279 2.00e-180 500
MS.gene24620.t1 AT3G09820 83.688 282 46 0 47 328 8 289 2.00e-179 498
MS.gene24620.t1 AT4G27600 23.962 313 209 10 7 308 123 417 1.37e-11 65.5

Find 87 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGAAGCAACCCGAAAAT+TGG 0.173309 1.2:-48938363 MS.gene24620:CDS
ACCAGCTTGTTTAGAGTTCT+TGG 0.208302 1.2:+48938776 None:intergenic
CATTCTGGGATTCAGGTATA+TGG 0.238438 1.2:-48937925 MS.gene24620:intron
GTATCAACTAATTTCTCTTT+AGG 0.253965 1.2:+48937603 None:intergenic
CCTCTGATGCCTTTGGCAAC+TGG 0.264995 1.2:+48937718 None:intergenic
TCTTTAGGTAATAGTATAAC+AGG 0.271758 1.2:+48937618 None:intergenic
GCCAAATATTTCTATATTGC+TGG 0.282337 1.2:-48938227 MS.gene24620:CDS
GCCAGCAATATAGAAATATT+TGG 0.289493 1.2:+48938226 None:intergenic
GCAACTAATTGAATGGATTC+AGG 0.289892 1.2:+48938185 None:intergenic
GATGTACTCCACATTATATT+TGG 0.305088 1.2:+48939113 None:intergenic
CAGTGGATGCTTCAAGTTCC+CGG 0.330838 1.2:-48938852 MS.gene24620:CDS
TTGAAGAACTCGCAGATAAA+TGG 0.334608 1.2:+48938036 None:intergenic
TCCATCAATAATAATGGCTT+TGG 0.352044 1.2:-48940234 None:intergenic
TGGAGGATTTCTTTCACAAT+TGG 0.357365 1.2:-48937407 MS.gene24620:CDS
CTCTGATGCCTTTGGCAACT+GGG 0.358279 1.2:+48937719 None:intergenic
TTGCGTGCCTCTGATGCCTT+TGG 0.366644 1.2:+48937711 None:intergenic
GCTCTCACACATTCTTCAAT+AGG 0.380613 1.2:+48937373 None:intergenic
ACTTGTGCTGTTTGTGTGGT+TGG 0.384223 1.2:-48938606 MS.gene24620:CDS
CAAGAATGGCATTGTTCAAC+TGG 0.389961 1.2:+48940013 None:intergenic
TTTGTAGGAGATGCCTTTGT+TGG 0.393317 1.2:-48937427 MS.gene24620:intron
CATAGATTTGTGCTTATCTT+CGG 0.395196 1.2:+48939990 None:intergenic
GGAAGGTGTTCTTCTCGGTA+TGG 0.399130 1.2:-48940213 MS.gene24620:CDS
CAACCCGAAAATTGGGCATT+AGG 0.401588 1.2:-48938355 MS.gene24620:intron
TTTGAAGCAACCCGAAAATT+GGG 0.412056 1.2:-48938362 MS.gene24620:CDS
ATTTATCTGCGAGTTCTTCA+AGG 0.419149 1.2:-48938034 MS.gene24620:CDS
CTGTTTCAGGTACGATGAAA+TGG 0.420585 1.2:-48939139 MS.gene24620:intron
GCTTTGGAAGGTGTTCTTCT+CGG 0.423155 1.2:-48940218 MS.gene24620:CDS
TACCTCCCAGCCATGAACTT+TGG 0.426161 1.2:+48937863 None:intergenic
GTGCTTATCTTCGGCAAGAA+TGG 0.435280 1.2:+48939999 None:intergenic
GAATTCAATCAGGGTTGCTC+AGG 0.437505 1.2:-48938967 MS.gene24620:intron
TGCATCGGAAAAGACAAGTT+TGG 0.438686 1.2:-48938810 MS.gene24620:CDS
GTGCTACTCAGAATTCAATC+AGG 0.452939 1.2:-48938977 MS.gene24620:CDS
GTAGGAGATGCCTTTGTTGG+AGG 0.455368 1.2:-48937424 MS.gene24620:intron
ACCAATGTAACTAGTGGCCC+CGG 0.467806 1.2:+48938833 None:intergenic
AGTGGATGCTTCAAGTTCCC+GGG 0.474413 1.2:-48938851 MS.gene24620:CDS
GTTATTTGCTGCGGCATGCT+CGG 0.475346 1.2:+48938163 None:intergenic
AAGGGCAATACCTGCTCCAT+TGG 0.476251 1.2:+48937581 None:intergenic
GCAATTTGCAGCTGATAAGT+TGG 0.489440 1.2:+48938399 None:intergenic
TTTGTGTGGTTGGTGGTGAA+AGG 0.492976 1.2:-48938596 MS.gene24620:intron
CAACTAATTGAATGGATTCA+GGG 0.497187 1.2:+48938186 None:intergenic
GAAGGTGTTCTTCTCGGTAT+GGG 0.502474 1.2:-48940212 MS.gene24620:CDS
CCCGTATGTGTTGCTCAAGA+TGG 0.505635 1.2:-48937657 MS.gene24620:CDS
TGGATTCAGGGGATACAGTA+AGG 0.509166 1.2:+48938198 None:intergenic
AGGCATCAGAGGCACGCAAA+AGG 0.511205 1.2:-48937707 MS.gene24620:CDS
CCCGGGGCCACTAGTTACAT+TGG 0.515125 1.2:-48938834 MS.gene24620:CDS
CCCATCTTGAGCAACACATA+CGG 0.516893 1.2:+48937656 None:intergenic
TGTGCTGTTTGTGTGGTTGG+TGG 0.518619 1.2:-48938603 MS.gene24620:CDS
CCGTATGTGTTGCTCAAGAT+GGG 0.523351 1.2:-48937656 MS.gene24620:CDS
TACGGCAGAGCTTTCTCCTG+TGG 0.523507 1.2:+48938009 None:intergenic
TATAATGTGGAGTACATCGC+TGG 0.524618 1.2:-48939108 MS.gene24620:CDS
GAGAAATTAGTTGATACCAA+TGG 0.529177 1.2:-48937597 MS.gene24620:CDS
CGCAGATAAATGGTGCAGAA+AGG 0.536901 1.2:+48938046 None:intergenic
CGAGTTCTTCAAGGATCCAC+AGG 0.539544 1.2:-48938025 MS.gene24620:CDS
ATTGAAGAATGTGTGAGAGC+TGG 0.541729 1.2:-48937370 MS.gene24620:CDS
TTAGTTGATACCAATGGAGC+AGG 0.545602 1.2:-48937591 MS.gene24620:intron
GAAGATGAGAATACACCTAC+AGG 0.551303 1.2:-48938630 MS.gene24620:CDS
ATGCTCGGCAACTAATTGAA+TGG 0.551334 1.2:+48938178 None:intergenic
GACAGCAGAGATGTCGAGAA+GGG 0.552559 1.2:+48940184 None:intergenic
CCATCTTGAGCAACACATAC+GGG 0.552682 1.2:+48937657 None:intergenic
AGGAACTTGTGCTGTTTGTG+TGG 0.555282 1.2:-48938610 MS.gene24620:CDS
CGACAGCAGAGATGTCGAGA+AGG 0.569277 1.2:+48940183 None:intergenic
ACTAGTTACATTGGTTGCAT+CGG 0.569490 1.2:-48938825 MS.gene24620:CDS
TTGAAGAATGTGTGAGAGCT+GGG 0.569874 1.2:-48937369 MS.gene24620:CDS
ACCAAGAACTCTAAACAAGC+TGG 0.574572 1.2:-48938777 MS.gene24620:CDS
CCAGTTGCCAAAGGCATCAG+AGG 0.578685 1.2:-48937718 MS.gene24620:CDS
TCTAACCTTGTTATTTGCTG+CGG 0.578850 1.2:+48938154 None:intergenic
TGAAAGAAATCCTCCAACAA+AGG 0.578951 1.2:+48937414 None:intergenic
ATCAGCTGCAAATTGCTACA+AGG 0.584960 1.2:-48938392 MS.gene24620:CDS
AAAGATATCCCAGTTGCCAA+AGG 0.593183 1.2:-48937727 MS.gene24620:CDS
TCAATAATAATGGCTTTGGA+AGG 0.597485 1.2:-48940230 None:intergenic
CAGCAAATGTTATCATCCAA+AGG 0.601761 1.2:-48937339 None:intergenic
AACTAATTGAATGGATTCAG+GGG 0.625445 1.2:+48938187 None:intergenic
TGCTACTCAGAATTCAATCA+GGG 0.630239 1.2:-48938976 MS.gene24620:CDS
AAGGATTACTGTTATCACAC+AGG 0.637867 1.2:-48937688 MS.gene24620:CDS
ACAGCAGAGATGTCGAGAAG+GGG 0.640848 1.2:+48940185 None:intergenic
CTTTAGGTAATAGTATAACA+GGG 0.644006 1.2:+48937619 None:intergenic
TTCCAAAGTTCATGGCTGGG+AGG 0.650106 1.2:-48937865 MS.gene24620:intron
CGGAAAAGACAAGTTTGGTG+AGG 0.651267 1.2:-48938805 MS.gene24620:CDS
GATGCAACCAATGTAACTAG+TGG 0.655384 1.2:+48938827 None:intergenic
CCAATGTAACTAGTGGCCCC+GGG 0.655549 1.2:+48938834 None:intergenic
CAAACAGCACAAGTTCCTGT+AGG 0.659898 1.2:+48938615 None:intergenic
GCATGCCGCAGCAAATAACA+AGG 0.662561 1.2:-48938159 MS.gene24620:intron
AGGATTACTGTTATCACACA+GGG 0.665946 1.2:-48937687 MS.gene24620:CDS
GTGGATGCTTCAAGTTCCCG+GGG 0.678166 1.2:-48938850 MS.gene24620:CDS
TGACCAGACTGAAAATGTCG+AGG 0.681552 1.2:-48937760 MS.gene24620:intron
AATGTGGAGTACATCGCTGG+AGG 0.683186 1.2:-48939105 MS.gene24620:intron
AATGGCTGCCAAATATAATG+TGG 0.689459 1.2:-48939121 MS.gene24620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTTTTCAAAATTTTAT+CGG - chr1.2:48938062-48938081 MS.gene24620:CDS 10.0%
!! TTATTTGAATTTAACAGTTT+AGG + chr1.2:48939583-48939602 None:intergenic 15.0%
!!! AATTTTAAAACTGAATTCAA+CGG + chr1.2:48938876-48938895 None:intergenic 15.0%
!!! GTAATTTCTTTTATATTAGT+TGG - chr1.2:48938629-48938648 MS.gene24620:CDS 15.0%
!!! TATTTTTATCTCCATTAAAT+GGG - chr1.2:48939253-48939272 MS.gene24620:intron 15.0%
!!! TTTATGATTTTTCTTTTTTC+AGG - chr1.2:48938562-48938581 MS.gene24620:intron 15.0%
!!! TTTTTAATAAATAGTTGAGA+AGG - chr1.2:48939312-48939331 MS.gene24620:intron 15.0%
!!! TTTTTTCTTATTGATCTTTA+AGG - chr1.2:48939608-48939627 MS.gene24620:intron 15.0%
!! ACAATTAGATGCAATAAAAA+AGG + chr1.2:48939129-48939148 None:intergenic 20.0%
!! ACTAAATTCATTTAACAACT+AGG - chr1.2:48938897-48938916 MS.gene24620:intron 20.0%
!! ATCACATCAAATCTTTAATT+AGG + chr1.2:48938259-48938278 None:intergenic 20.0%
!! ATTTGATGTGATGTAATAAT+TGG - chr1.2:48938267-48938286 MS.gene24620:intron 20.0%
!! GAGACATAGATTAATATATA+CGG - chr1.2:48937820-48937839 MS.gene24620:intron 20.0%
!! TTAACGTTTGTTTAAGTATT+TGG - chr1.2:48937864-48937883 MS.gene24620:intron 20.0%
!! TTTATAGATTATTGTGTTTC+CGG - chr1.2:48938512-48938531 MS.gene24620:intron 20.0%
!!! AAGATAATAAAATTTTGCAC+TGG - chr1.2:48939041-48939060 MS.gene24620:intron 20.0%
!!! AGATTTTTAGCTGTTTTTAT+CGG - chr1.2:48938323-48938342 MS.gene24620:intron 20.0%
!!! CTATTTTTATCTCCATTAAA+TGG - chr1.2:48939252-48939271 MS.gene24620:intron 20.0%
!!! GTGTTGATTTGAATAATAAA+AGG - chr1.2:48937469-48937488 MS.gene24620:intron 20.0%
!!! TCTTTCTTTTTTGTTTTTTG+CGG - chr1.2:48937447-48937466 MS.gene24620:intron 20.0%
!!! TGAGTTTAACTTATTTAGTT+TGG - chr1.2:48938202-48938221 MS.gene24620:CDS 20.0%
!!! TTCTTATTCGAAGTATTAAA+GGG - chr1.2:48939016-48939035 MS.gene24620:intron 20.0%
!!! TTCTTTTCTTCTATTTTTGT+AGG - chr1.2:48940119-48940138 MS.gene24620:intron 20.0%
!!! TTTCTTATTCGAAGTATTAA+AGG - chr1.2:48939015-48939034 MS.gene24620:intron 20.0%
!!! TTTGTTGTTGAATAATGTTT+TGG - chr1.2:48937672-48937691 MS.gene24620:CDS 20.0%
!!! TTTTTATTGCATCTAATTGT+AGG - chr1.2:48939129-48939148 MS.gene24620:CDS 20.0%
! AACAGAGATCAAAACAAATA+AGG + chr1.2:48937957-48937976 None:intergenic 25.0%
! AATGATAAATTGACCTTGAA+TGG + chr1.2:48940076-48940095 None:intergenic 25.0%
! AATTAACTACAAAAAGCAGA+AGG + chr1.2:48940002-48940021 None:intergenic 25.0%
! ATCAAATACTTCTAGTAGAA+AGG + chr1.2:48939454-48939473 None:intergenic 25.0%
! ATGATAAATTGACCTTGAAT+GGG + chr1.2:48940075-48940094 None:intergenic 25.0%
! ATTAACTACAAAAAGCAGAA+GGG + chr1.2:48940001-48940020 None:intergenic 25.0%
! CACAACTACAAATATAACTT+TGG + chr1.2:48940030-48940049 None:intergenic 25.0%
! CTTTAGGTAATAGTATAACA+GGG + chr1.2:48939945-48939964 None:intergenic 25.0%
! GTATCAACTAATTTCTCTTT+AGG + chr1.2:48939961-48939980 None:intergenic 25.0%
! TAGATTAATATATACGGTGT+TGG - chr1.2:48937826-48937845 MS.gene24620:intron 25.0%
! TATACAACAAGATTGAAAGT+AGG - chr1.2:48937796-48937815 MS.gene24620:intron 25.0%
! TCAAATACTTCTAGTAGAAA+GGG + chr1.2:48939453-48939472 None:intergenic 25.0%
! TCTTTAGGTAATAGTATAAC+AGG + chr1.2:48939946-48939965 None:intergenic 25.0%
! TTATAGATTATTGTGTTTCC+GGG - chr1.2:48938513-48938532 MS.gene24620:intron 25.0%
! TTCGAATAAGAAAAAATGCA+AGG + chr1.2:48939008-48939027 None:intergenic 25.0%
! TTTCATTTAGTAACTCATCT+TGG - chr1.2:48939766-48939785 MS.gene24620:intron 25.0%
!! TCTCATTTCAGATTCATTTT+CGG - chr1.2:48937623-48937642 MS.gene24620:CDS 25.0%
!! TTAACAGTTTAGGATTCTTA+CGG + chr1.2:48939573-48939592 None:intergenic 25.0%
!!! TGGTTTTCAATTTGATTTAC+AGG - chr1.2:48937517-48937536 MS.gene24620:intron 25.0%
AATGTAAAAGCAAAACTGCA+AGG + chr1.2:48939748-48939767 None:intergenic 30.0%
ATGTAAAAGCAAAACTGCAA+GGG + chr1.2:48939747-48939766 None:intergenic 30.0%
CATAGATTTGTGCTTATCTT+CGG + chr1.2:48937574-48937593 None:intergenic 30.0%
GATGTACTCCACATTATATT+TGG + chr1.2:48938451-48938470 None:intergenic 30.0%
GATGTGATGTAATAATTGGT+TGG - chr1.2:48938271-48938290 MS.gene24620:intron 30.0%
GCCAGCAATATAGAAATATT+TGG + chr1.2:48939338-48939357 None:intergenic 30.0%
GGAAAAAAAAATCCCATTCA+AGG - chr1.2:48940060-48940079 MS.gene24620:intron 30.0%
TAAAACTGAATTCAACGGTT+CGG + chr1.2:48938871-48938890 None:intergenic 30.0%
TCATCAAGATGACTAACATT+TGG - chr1.2:48939278-48939297 MS.gene24620:intron 30.0%
! AACTAATTGAATGGATTCAG+GGG + chr1.2:48939377-48939396 None:intergenic 30.0%
! AGAACATTTTCCAAAGTTCA+TGG - chr1.2:48939688-48939707 MS.gene24620:intron 30.0%
! ATCTTTAAGGATTTGCATTC+TGG - chr1.2:48939621-48939640 MS.gene24620:intron 30.0%
! CAACTAATTGAATGGATTCA+GGG + chr1.2:48939378-48939397 None:intergenic 30.0%
! GAGAAATTAGTTGATACCAA+TGG - chr1.2:48939964-48939983 MS.gene24620:intron 30.0%
! GCCAAATATTTCTATATTGC+TGG - chr1.2:48939334-48939353 MS.gene24620:intron 30.0%
! TCTTGATGATTCCCATTTAA+TGG + chr1.2:48939267-48939286 None:intergenic 30.0%
! TCTTTAAGGATTTGCATTCT+GGG - chr1.2:48939622-48939641 MS.gene24620:intron 30.0%
!! AAAAATGTTACTTTCCTTCC+CGG + chr1.2:48938534-48938553 None:intergenic 30.0%
!! AGGTATATGGACTATGTTTT+TGG - chr1.2:48939649-48939668 MS.gene24620:intron 30.0%
!! TTTGATTTTGCTTCTTACAG+TGG - chr1.2:48938692-48938711 MS.gene24620:intron 30.0%
AAGGATTACTGTTATCACAC+AGG - chr1.2:48939873-48939892 MS.gene24620:intron 35.0%
AATGGCTGCCAAATATAATG+TGG - chr1.2:48938440-48938459 MS.gene24620:intron 35.0%
AGGATTACTGTTATCACACA+GGG - chr1.2:48939874-48939893 MS.gene24620:intron 35.0%
ATACTTCTAGTAGAAAGGGA+AGG + chr1.2:48939449-48939468 None:intergenic 35.0%
ATTTATCTGCGAGTTCTTCA+AGG - chr1.2:48939527-48939546 MS.gene24620:intron 35.0%
TGAAAGAAATCCTCCAACAA+AGG + chr1.2:48940150-48940169 None:intergenic 35.0%
TGAATCAGATCTCATGTTTC+TGG - chr1.2:48937497-48937516 MS.gene24620:intron 35.0%
TGCTACTCAGAATTCAATCA+GGG - chr1.2:48938585-48938604 MS.gene24620:intron 35.0%
TGGAGGATTTCTTTCACAAT+TGG - chr1.2:48940154-48940173 MS.gene24620:intron 35.0%
TTCAACGTAATCACAAGTGT+TGG + chr1.2:48938038-48938057 None:intergenic 35.0%
TTGAAGAACTCGCAGATAAA+TGG + chr1.2:48939528-48939547 None:intergenic 35.0%
TTGTAGTTGTGCTTATGAGT+AGG - chr1.2:48940039-48940058 MS.gene24620:intron 35.0%
! ACACCTTCGATCAAAAGTAT+TGG + chr1.2:48937983-48938002 None:intergenic 35.0%
! ACTAGTTACATTGGTTGCAT+CGG - chr1.2:48938736-48938755 MS.gene24620:intron 35.0%
! ATTTGAAGCAACCCGAAAAT+TGG - chr1.2:48939198-48939217 MS.gene24620:intron 35.0%
! ATTTTCCAAAGTTCATGGCT+GGG - chr1.2:48939693-48939712 MS.gene24620:intron 35.0%
! CTTGTGCTAGAATGCTATTT+AGG - chr1.2:48937910-48937929 MS.gene24620:CDS 35.0%
! GCAACTAATTGAATGGATTC+AGG + chr1.2:48939379-48939398 None:intergenic 35.0%
! TGTTTGAGTCTTTGAGAGTT+TGG - chr1.2:48938226-48938245 MS.gene24620:CDS 35.0%
! TTTGAAGCAACCCGAAAATT+GGG - chr1.2:48939199-48939218 MS.gene24620:intron 35.0%
! TTTTCCATCTCTCAGTTTTC+TGG - chr1.2:48938298-48938317 MS.gene24620:intron 35.0%
!! TCTAACCTTGTTATTTGCTG+CGG + chr1.2:48939410-48939429 None:intergenic 35.0%
!!! AATTTTCGGGTTGCTTCAAA+TGG + chr1.2:48939199-48939218 None:intergenic 35.0%
AAAGATATCCCAGTTGCCAA+AGG - chr1.2:48939834-48939853 MS.gene24620:intron 40.0%
ACCAAGAACTCTAAACAAGC+TGG - chr1.2:48938784-48938803 MS.gene24620:CDS 40.0%
AGATGCTGAACAGATCAACA+AGG + chr1.2:48939234-48939253 None:intergenic 40.0%
AGATTATTGTGTTTCCGGGA+AGG - chr1.2:48938517-48938536 MS.gene24620:intron 40.0%
AGTATCTTACTCCCTTGTGA+AGG - chr1.2:48939479-48939498 MS.gene24620:intron 40.0%
ATCAGCTGCAAATTGCTACA+AGG - chr1.2:48939169-48939188 MS.gene24620:intron 40.0%
ATGCTCGGCAACTAATTGAA+TGG + chr1.2:48939386-48939405 None:intergenic 40.0%
ATTGAAGAATGTGTGAGAGC+TGG - chr1.2:48940191-48940210 MS.gene24620:CDS 40.0%
CAAGAATGGCATTGTTCAAC+TGG + chr1.2:48937551-48937570 None:intergenic 40.0%
CAGACAACCAAAATGAAGCA+CGG + chr1.2:48938120-48938139 None:intergenic 40.0%
CATCATGAAGACCTTCACAA+GGG + chr1.2:48939493-48939512 None:intergenic 40.0%
CTTTCCAGAAAACTGAGAGA+TGG + chr1.2:48938305-48938324 None:intergenic 40.0%
GAAGATGAGAATACACCTAC+AGG - chr1.2:48938931-48938950 MS.gene24620:intron 40.0%
GATGCAACCAATGTAACTAG+TGG + chr1.2:48938737-48938756 None:intergenic 40.0%
GCAATTTGCAGCTGATAAGT+TGG + chr1.2:48939165-48939184 None:intergenic 40.0%
GCTCTCACACATTCTTCAAT+AGG + chr1.2:48940191-48940210 None:intergenic 40.0%
TATAATGTGGAGTACATCGC+TGG - chr1.2:48938453-48938472 MS.gene24620:intron 40.0%
TATGATCCTACGACTGTTTC+AGG - chr1.2:48938409-48938428 MS.gene24620:CDS 40.0%
TCATCATGAAGACCTTCACA+AGG + chr1.2:48939494-48939513 None:intergenic 40.0%
TGCATCGGAAAAGACAAGTT+TGG - chr1.2:48938751-48938770 MS.gene24620:intron 40.0%
TTGAAGAATGTGTGAGAGCT+GGG - chr1.2:48940192-48940211 MS.gene24620:CDS 40.0%
TTTGTAGGAGATGCCTTTGT+TGG - chr1.2:48940134-48940153 MS.gene24620:intron 40.0%
! ACATTTTCAGTCTGGTCAAC+AGG + chr1.2:48939799-48939818 None:intergenic 40.0%
! ACCAGCTTGTTTAGAGTTCT+TGG + chr1.2:48938788-48938807 None:intergenic 40.0%
! CATTTTCCAAAGTTCATGGC+TGG - chr1.2:48939692-48939711 MS.gene24620:intron 40.0%
! CTGTTTCAGGTACGATGAAA+TGG - chr1.2:48938422-48938441 MS.gene24620:intron 40.0%
! GCACCAATACTTTTGATCGA+AGG - chr1.2:48937977-48937996 MS.gene24620:intron 40.0%
! GGTACCTAATGCCCAATTTT+CGG + chr1.2:48939213-48939232 None:intergenic 40.0%
! GTACCTAATGCCCAATTTTC+GGG + chr1.2:48939212-48939231 None:intergenic 40.0%
! GTGCTACTCAGAATTCAATC+AGG - chr1.2:48938584-48938603 MS.gene24620:intron 40.0%
! GTGTTTGACACGAAAAGTGT+AGG + chr1.2:48938016-48938035 None:intergenic 40.0%
! TTAGTTGATACCAATGGAGC+AGG - chr1.2:48939970-48939989 MS.gene24620:intron 40.0%
!! CATTCTGGGATTCAGGTATA+TGG - chr1.2:48939636-48939655 MS.gene24620:intron 40.0%
ATCGTACCTGAAACAGTCGT+AGG + chr1.2:48938418-48938437 None:intergenic 45.0%
CAAACAGCACAAGTTCCTGT+AGG + chr1.2:48938949-48938968 None:intergenic 45.0%
CAACCCGAAAATTGGGCATT+AGG - chr1.2:48939206-48939225 MS.gene24620:intron 45.0%
CCATCTTGAGCAACACATAC+GGG + chr1.2:48939907-48939926 None:intergenic 45.0%
CCCATCTTGAGCAACACATA+CGG + chr1.2:48939908-48939927 None:intergenic 45.0%
CGCAGATAAATGGTGCAGAA+AGG + chr1.2:48939518-48939537 None:intergenic 45.0%
GAATTCAATCAGGGTTGCTC+AGG - chr1.2:48938594-48938613 MS.gene24620:intron 45.0%
GTGCTTATCTTCGGCAAGAA+TGG + chr1.2:48937565-48937584 None:intergenic 45.0%
TGACCAGACTGAAAATGTCG+AGG - chr1.2:48939801-48939820 MS.gene24620:intron 45.0%
TGGATTCAGGGGATACAGTA+AGG + chr1.2:48939366-48939385 None:intergenic 45.0%
! CACGAAAAGTGTAGGACATC+AGG + chr1.2:48938008-48938027 None:intergenic 45.0%
! CCGTATGTGTTGCTCAAGAT+GGG - chr1.2:48939905-48939924 MS.gene24620:intron 45.0%
! CGGAAAAGACAAGTTTGGTG+AGG - chr1.2:48938756-48938775 MS.gene24620:intron 45.0%
! TCTCCTCGACATTTTCAGTC+TGG + chr1.2:48939807-48939826 None:intergenic 45.0%
! TCTGTGTCCGTGCTTCATTT+TGG - chr1.2:48938110-48938129 MS.gene24620:intron 45.0%
!! ACTTGTGCTGTTTGTGTGGT+TGG - chr1.2:48938955-48938974 MS.gene24620:intron 45.0%
!! AGGAACTTGTGCTGTTTGTG+TGG - chr1.2:48938951-48938970 MS.gene24620:intron 45.0%
!! GAAGGTGTTCTTCTCGGTAT+GGG - chr1.2:48937349-48937368 MS.gene24620:CDS 45.0%
!! GCTTTGGAAGGTGTTCTTCT+CGG - chr1.2:48937343-48937362 MS.gene24620:CDS 45.0%
!! GGATTTGCATTCTGGGATTC+AGG - chr1.2:48939629-48939648 MS.gene24620:intron 45.0%
!! TTTGTGTGGTTGGTGGTGAA+AGG - chr1.2:48938965-48938984 MS.gene24620:intron 45.0%
AAGGGCAATACCTGCTCCAT+TGG + chr1.2:48939983-48940002 None:intergenic 50.0%
AATGTGGAGTACATCGCTGG+AGG - chr1.2:48938456-48938475 MS.gene24620:intron 50.0%
ACAGCAGAGATGTCGAGAAG+GGG + chr1.2:48937379-48937398 None:intergenic 50.0%
ACCAATGTAACTAGTGGCCC+CGG + chr1.2:48938731-48938750 None:intergenic 50.0%
CGAGTTCTTCAAGGATCCAC+AGG - chr1.2:48939536-48939555 MS.gene24620:intron 50.0%
CTCTGATGCCTTTGGCAACT+GGG + chr1.2:48939845-48939864 None:intergenic 50.0%
GACAGCAGAGATGTCGAGAA+GGG + chr1.2:48937380-48937399 None:intergenic 50.0%
GCATGCCGCAGCAAATAACA+AGG - chr1.2:48939402-48939421 MS.gene24620:intron 50.0%
GTAGGAGATGCCTTTGTTGG+AGG - chr1.2:48940137-48940156 MS.gene24620:intron 50.0%
TACCTCCCAGCCATGAACTT+TGG + chr1.2:48939701-48939720 None:intergenic 50.0%
TTCCAAAGTTCATGGCTGGG+AGG - chr1.2:48939696-48939715 MS.gene24620:intron 50.0%
! AGTGGATGCTTCAAGTTCCC+GGG - chr1.2:48938710-48938729 MS.gene24620:intron 50.0%
! CAGTGGATGCTTCAAGTTCC+CGG - chr1.2:48938709-48938728 MS.gene24620:intron 50.0%
! CCCGTATGTGTTGCTCAAGA+TGG - chr1.2:48939904-48939923 MS.gene24620:intron 50.0%
! GTTATTTGCTGCGGCATGCT+CGG + chr1.2:48939401-48939420 None:intergenic 50.0%
!! AACGGTTCGGTACAGTGTAG+TGG + chr1.2:48938858-48938877 None:intergenic 50.0%
!! GGAAGGTGTTCTTCTCGGTA+TGG - chr1.2:48937348-48937367 MS.gene24620:CDS 50.0%
!! GGTTGGTGGTGAAAGGTAAG+AGG - chr1.2:48938972-48938991 MS.gene24620:CDS 50.0%
!! TGTGCTGTTTGTGTGGTTGG+TGG - chr1.2:48938958-48938977 MS.gene24620:intron 50.0%
CCAATGTAACTAGTGGCCCC+GGG + chr1.2:48938730-48938749 None:intergenic 55.0%
CCTCTGATGCCTTTGGCAAC+TGG + chr1.2:48939846-48939865 None:intergenic 55.0%
CGACAGCAGAGATGTCGAGA+AGG + chr1.2:48937381-48937400 None:intergenic 55.0%
TACGGCAGAGCTTTCTCCTG+TGG + chr1.2:48939555-48939574 None:intergenic 55.0%
TTGCGTGCCTCTGATGCCTT+TGG + chr1.2:48939853-48939872 None:intergenic 55.0%
! AGGCATCAGAGGCACGCAAA+AGG - chr1.2:48939854-48939873 MS.gene24620:intron 55.0%
! GTGGATGCTTCAAGTTCCCG+GGG - chr1.2:48938711-48938730 MS.gene24620:intron 55.0%
!! CCAGTTGCCAAAGGCATCAG+AGG - chr1.2:48939843-48939862 MS.gene24620:intron 55.0%
CCCGGGGCCACTAGTTACAT+TGG - chr1.2:48938727-48938746 MS.gene24620:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 48937340 48940243 48937340 ID=MS.gene24620
chr1.2 mRNA 48937340 48940243 48937340 ID=MS.gene24620.t1;Parent=MS.gene24620
chr1.2 exon 48940161 48940243 48940161 ID=MS.gene24620.t1.exon1;Parent=MS.gene24620.t1
chr1.2 CDS 48940161 48940243 48940161 ID=cds.MS.gene24620.t1;Parent=MS.gene24620.t1
chr1.2 exon 48939991 48940044 48939991 ID=MS.gene24620.t1.exon2;Parent=MS.gene24620.t1
chr1.2 CDS 48939991 48940044 48939991 ID=cds.MS.gene24620.t1;Parent=MS.gene24620.t1
chr1.2 exon 48939106 48939152 48939106 ID=MS.gene24620.t1.exon3;Parent=MS.gene24620.t1
chr1.2 CDS 48939106 48939152 48939106 ID=cds.MS.gene24620.t1;Parent=MS.gene24620.t1
chr1.2 exon 48938968 48938999 48938968 ID=MS.gene24620.t1.exon4;Parent=MS.gene24620.t1
chr1.2 CDS 48938968 48938999 48938968 ID=cds.MS.gene24620.t1;Parent=MS.gene24620.t1
chr1.2 exon 48938770 48938871 48938770 ID=MS.gene24620.t1.exon5;Parent=MS.gene24620.t1
chr1.2 CDS 48938770 48938871 48938770 ID=cds.MS.gene24620.t1;Parent=MS.gene24620.t1
chr1.2 exon 48938597 48938664 48938597 ID=MS.gene24620.t1.exon6;Parent=MS.gene24620.t1
chr1.2 CDS 48938597 48938664 48938597 ID=cds.MS.gene24620.t1;Parent=MS.gene24620.t1
chr1.2 exon 48938356 48938432 48938356 ID=MS.gene24620.t1.exon7;Parent=MS.gene24620.t1
chr1.2 CDS 48938356 48938432 48938356 ID=cds.MS.gene24620.t1;Parent=MS.gene24620.t1
chr1.2 exon 48938160 48938257 48938160 ID=MS.gene24620.t1.exon8;Parent=MS.gene24620.t1
chr1.2 CDS 48938160 48938257 48938160 ID=cds.MS.gene24620.t1;Parent=MS.gene24620.t1
chr1.2 exon 48938012 48938082 48938012 ID=MS.gene24620.t1.exon9;Parent=MS.gene24620.t1
chr1.2 CDS 48938012 48938082 48938012 ID=cds.MS.gene24620.t1;Parent=MS.gene24620.t1
chr1.2 exon 48937866 48937932 48937866 ID=MS.gene24620.t1.exon10;Parent=MS.gene24620.t1
chr1.2 CDS 48937866 48937932 48937866 ID=cds.MS.gene24620.t1;Parent=MS.gene24620.t1
chr1.2 exon 48937592 48937775 48937592 ID=MS.gene24620.t1.exon11;Parent=MS.gene24620.t1
chr1.2 CDS 48937592 48937775 48937592 ID=cds.MS.gene24620.t1;Parent=MS.gene24620.t1
chr1.2 exon 48937340 48937442 48937340 ID=MS.gene24620.t1.exon12;Parent=MS.gene24620.t1
chr1.2 CDS 48937340 48937442 48937340 ID=cds.MS.gene24620.t1;Parent=MS.gene24620.t1
Gene Sequence

>MS.gene24620

ATGGCTTTGGAAGGTGTTCTTCTCGGTATGGGTAATCCCCTTCTCGACATCTCTGCTGTCGTCGACGAAGATTTCTTGAAAAAGTACGTCGCTTCTTTCTTACTACATCTTTCTTTTTTGTTTTTTGCGGTGTTGATTTGAATAATAAAAGGTGAAATGAATCAGATCTCATGTTTCTGGTTTTCAATTTGATTTACAGGTTTGATATCCAGTTGAACAATGCCATTCTTGCCGAAGATAAGCACAAATCTATGTAAGATTTTCGACTCTACGCGTTGTTTTTTCTCATTTCAGATTCATTTTCGGATCAGTACGATATCAACTATCAACGTTTTGTTGTTGAATAATGTTTTGGTTGTTTGAGAGTTTAACTTATTTATTTCGAAGAAATGATGTTTACACATGTTAAATACGATGTCTTTGTTTTTTGTGTGTATTTTTTAAATATGCGTAAAATATACAACAAGATTGAAAGTAGGAGAGACATAGATTAATATATACGGTGTTGGTATTTTGATGTTTAATTAACGTTTGTTTAAGTATTTGGTAAACATGCTAATTTGAATTTATCTTGTGCTAGAATGCTATTTAGGATAAATATAATGTCGAGTTTACCTTATTTGTTTTGATCTCTGTTGCACCAATACTTTTGATCGAAGGTGTGTCCTGATGTCCTACACTTTTCGTGTCAAACACCAACACTTGTGATTACGTTGAATTGTCATTTTTTTCAAAATTTTATCGGTTTCTGTATCAGTGTCGTGTCTGCGTCTGTGTCCGTGCTTCATTTTGGTTGTCTGAGCTGTCATGTAACATGCTATTTTTATTTGATTTTGTGCTATAATGTATTTTAAGATAATCTTGAGTTTAACTTATTTAGTTTGGTTGTTTGAGTCTTTGAGAGTTTGGTAAACATCCTAATTAAAGATTTGATGTGATGTAATAATTGGTTGGAGATTTTTCCATCTCTCAGTTTTCTGGAAAGATTTTTAGCTGTTTTTATCGGCTCTATTCTTTTTGTTTTAGTATTTAGATATTTTATGAAAAGATATCATGTTTTGTGACTTCATATGATCCTACGACTGTTTCAGGTACGATGAAATGGCTGCCAAATATAATGTGGAGTACATCGCTGGAGGTAATTACACTAGATCTGAATTGTTGTGTTTTAATTTATAGATTATTGTGTTTCCGGGAAGGAAAGTAACATTTTTTAATGATGTTTATGATTTTTCTTTTTTCAGGTGCTACTCAGAATTCAATCAGGGTTGCTCAGGTTTGTGCAGTGTGTAATTTCTTTTATATTAGTTGGAGTTGAATCTCGAGTAGCTGTTGTAAAAATAGCTTATCATTTTGATTTTGCTTCTTACAGTGGATGCTTCAAGTTCCCGGGGCCACTAGTTACATTGGTTGCATCGGAAAAGACAAGTTTGGTGAGGAGATGACCAAGAACTCTAAACAAGCTGGTGTAAATGTAAGTTTAATCTTGTAATTTTGTCTTGTTTCTTTTTCAATCCACTACACTGTACCGAACCGTTGAATTCAGTTTTAAAATTAACTAAATTCATTTAACAACTAGGTTCACTATTATGAAGATGAGAATACACCTACAGGAACTTGTGCTGTTTGTGTGGTTGGTGGTGAAAGGTAAGAGGATCAAGCTTTCCTTGCATTTTTTCTTATTCGAAGTATTAAAGGGAAAAGATAATAAAATTTTGCACTGGCTTAAAATAGTATACATCTTCAGCTTAGTATATATTTTTTATTGCAAAATTGTTGTTTGAAGCCTTTTTTATTGCATCTAATTGTAGGTCACTTATTGCCAACTTATCAGCTGCAAATTGCTACAAGGTCGACCATTTGAAGCAACCCGAAAATTGGGCATTAGGTACCTTGTTGATCTGTTCAGCATCTATTTTTATCTCCATTAAATGGGAATCATCAAGATGACTAACATTTGGTTTTGTGCATTTTTTTAATAAATAGTTGAGAAGGCCAAATATTTCTATATTGCTGGCTTTTTCCTTACTGTATCCCCTGAATCCATTCAATTAGTTGCCGAGCATGCCGCAGCAAATAACAAGGTTAGATATGATTAAAACTTTGCCTTCCCTTTCTACTAGAAGTATTTGATACTCAAGTATCTTACTCCCTTGTGAAGGTCTTCATGATGAACCTTTCTGCACCATTTATCTGCGAGTTCTTCAAGGATCCACAGGAGAAAGCTCTGCCGTAAGAATCCTAAACTGTTAAATTCAAATAAATTATTTTTTTCTTATTGATCTTTAAGGATTTGCATTCTGGGATTCAGGTATATGGACTATGTTTTTGGAAATGAGACTGAAGCAAGAACATTTTCCAAAGTTCATGGCTGGGAGGTAAATCATTACTTTGTAGATCTGTACCCTTGCAGTTTTGCTTTTACATTTCATTTAGTAACTCATCTTGGTTCTTTTCCTGTTGACCAGACTGAAAATGTCGAGGAGATAGCTTTAAAGATATCCCAGTTGCCAAAGGCATCAGAGGCACGCAAAAGGATTACTGTTATCACACAGGGTGCTGATCCCGTATGTGTTGCTCAAGATGGGAAAGTGACATTGTACCCTGTTATACTATTACCTAAAGAGAAATTAGTTGATACCAATGGAGCAGGTATTGCCCTTCTGCTTTTTGTAGTTAATTGTTGACCAAAGTTATATTTGTAGTTGTGCTTATGAGTAGGAAAAAAAAATCCCATTCAAGGTCAATTTATCATTGATGTCACATGCTAGTCGTAATATTCTTTTCTTCTATTTTTGTAGGAGATGCCTTTGTTGGAGGATTTCTTTCACAATTGGTTCAAGAGAAGCCTATTGAAGAATGTGTGAGAGCTGGGTGTTATGCAGCAAATGTTATCATCCAAAG
Protein sequence

>MS.gene24620.t1

MALEGVLLGMGNPLLDISAVVDEDFLKKFDIQLNNAILAEDKHKSMYDEMAAKYNVEYIAGGATQNSIRVAQWMLQVPGATSYIGCIGKDKFGEEMTKNSKQAGVNVHYYEDENTPTGTCAVCVVGGERSLIANLSAANCYKVDHLKQPENWALVEKAKYFYIAGFFLTVSPESIQLVAEHAAANNKVFMMNLSAPFICEFFKDPQEKALPYMDYVFGNETEARTFSKVHGWETENVEEIALKISQLPKASEARKRITVITQGADPVCVAQDGKVTLYPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYAANVIIQ