Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25133.t1 | XP_003627287.1 | 89.2 | 212 | 22 | 1 | 1 | 211 | 1 | 212 | 2.30E-96 | 361.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25133.t1 | Q6ZBZ2 | 52.1 | 211 | 96 | 3 | 3 | 211 | 6 | 213 | 2.3e-52 | 206.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25133.t1 | G7L6V9 | 89.2 | 212 | 22 | 1 | 1 | 211 | 1 | 212 | 1.7e-96 | 361.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052142 | MS.gene25133 | 0.801707 | 7.93E-49 | -1.69E-46 |
| MS.gene052187 | MS.gene25133 | 0.857236 | 1.87E-62 | -1.69E-46 |
| MS.gene053074 | MS.gene25133 | 0.846178 | 2.56E-59 | -1.69E-46 |
| MS.gene054596 | MS.gene25133 | 0.800352 | 1.50E-48 | -1.69E-46 |
| MS.gene055359 | MS.gene25133 | 0.841294 | 5.19E-58 | -1.69E-46 |
| MS.gene058168 | MS.gene25133 | 0.824507 | 7.78E-54 | -1.69E-46 |
| MS.gene059006 | MS.gene25133 | 0.803201 | 3.90E-49 | -1.69E-46 |
| MS.gene059632 | MS.gene25133 | 0.815095 | 1.10E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25133.t1 | MTR_8g020750 | 89.151 | 212 | 22 | 1 | 1 | 211 | 1 | 212 | 1.61e-132 | 371 |
| MS.gene25133.t1 | MTR_8g020770 | 66.981 | 212 | 69 | 1 | 1 | 211 | 1 | 212 | 7.38e-101 | 291 |
| MS.gene25133.t1 | MTR_4g010340 | 64.762 | 210 | 68 | 4 | 3 | 211 | 1 | 205 | 9.40e-87 | 255 |
| MS.gene25133.t1 | MTR_8g020760 | 59.434 | 212 | 84 | 2 | 1 | 211 | 1 | 211 | 1.41e-80 | 239 |
| MS.gene25133.t1 | MTR_2g044040 | 55.450 | 211 | 92 | 2 | 1 | 211 | 1 | 209 | 2.91e-78 | 233 |
| MS.gene25133.t1 | MTR_2g019780 | 59.259 | 216 | 79 | 5 | 1 | 211 | 1 | 212 | 3.92e-77 | 231 |
| MS.gene25133.t1 | MTR_8g020630 | 54.028 | 211 | 95 | 2 | 1 | 211 | 1 | 209 | 6.27e-77 | 230 |
| MS.gene25133.t1 | MTR_0284s0010 | 54.976 | 211 | 93 | 2 | 1 | 211 | 1 | 209 | 1.32e-76 | 229 |
| MS.gene25133.t1 | MTR_3g019710 | 54.502 | 211 | 94 | 2 | 1 | 211 | 1 | 209 | 1.35e-76 | 229 |
| MS.gene25133.t1 | MTR_3g073170 | 57.944 | 214 | 83 | 4 | 1 | 211 | 1 | 210 | 9.11e-76 | 227 |
| MS.gene25133.t1 | MTR_2g036120 | 54.286 | 210 | 94 | 2 | 1 | 210 | 1 | 208 | 1.16e-74 | 224 |
| MS.gene25133.t1 | MTR_3g019680 | 55.122 | 205 | 90 | 2 | 7 | 211 | 6 | 208 | 6.82e-74 | 222 |
| MS.gene25133.t1 | MTR_3g019650 | 54.634 | 205 | 91 | 2 | 7 | 211 | 6 | 208 | 1.22e-73 | 222 |
| MS.gene25133.t1 | MTR_8g020650 | 55.851 | 188 | 82 | 1 | 24 | 211 | 23 | 209 | 8.50e-72 | 217 |
| MS.gene25133.t1 | MTR_2g045100 | 52.683 | 205 | 96 | 1 | 7 | 211 | 6 | 209 | 6.91e-71 | 214 |
| MS.gene25133.t1 | MTR_7g011340 | 56.383 | 188 | 81 | 1 | 24 | 211 | 23 | 209 | 8.79e-71 | 214 |
| MS.gene25133.t1 | MTR_8g020763 | 57.692 | 182 | 77 | 0 | 30 | 211 | 9 | 190 | 2.58e-70 | 213 |
| MS.gene25133.t1 | MTR_5g031460 | 51.185 | 211 | 101 | 2 | 1 | 211 | 1 | 209 | 2.04e-69 | 211 |
| MS.gene25133.t1 | MTR_8g020670 | 50.000 | 208 | 103 | 1 | 4 | 211 | 3 | 209 | 1.26e-67 | 206 |
| MS.gene25133.t1 | MTR_2g041550 | 47.642 | 212 | 108 | 2 | 1 | 211 | 1 | 210 | 7.03e-65 | 199 |
| MS.gene25133.t1 | MTR_8g020610 | 48.544 | 206 | 103 | 2 | 7 | 211 | 4 | 207 | 1.46e-62 | 193 |
| MS.gene25133.t1 | MTR_2g041570 | 44.811 | 212 | 114 | 2 | 1 | 211 | 1 | 210 | 3.43e-62 | 192 |
| MS.gene25133.t1 | MTR_8g020590 | 45.238 | 210 | 112 | 2 | 3 | 211 | 1 | 208 | 2.42e-61 | 190 |
| MS.gene25133.t1 | MTR_2g041580 | 43.868 | 212 | 116 | 2 | 1 | 211 | 1 | 210 | 3.17e-61 | 190 |
| MS.gene25133.t1 | MTR_3g019810 | 43.781 | 201 | 106 | 2 | 4 | 204 | 109 | 302 | 3.88e-50 | 165 |
| MS.gene25133.t1 | MTR_6g005330 | 43.128 | 211 | 99 | 6 | 3 | 200 | 1 | 203 | 7.04e-43 | 144 |
| MS.gene25133.t1 | MTR_6g005360 | 43.814 | 194 | 91 | 5 | 3 | 183 | 1 | 189 | 3.15e-41 | 139 |
| MS.gene25133.t1 | MTR_6g005310 | 44.211 | 190 | 88 | 5 | 7 | 183 | 5 | 189 | 3.63e-41 | 139 |
| MS.gene25133.t1 | MTR_6g005340 | 43.684 | 190 | 89 | 5 | 7 | 183 | 5 | 189 | 2.50e-40 | 137 |
| MS.gene25133.t1 | MTR_4g027415 | 55.372 | 121 | 53 | 1 | 24 | 144 | 23 | 142 | 3.65e-40 | 134 |
| MS.gene25133.t1 | MTR_1g079490 | 39.024 | 205 | 110 | 5 | 14 | 207 | 17 | 217 | 1.97e-37 | 130 |
| MS.gene25133.t1 | MTR_1g085140 | 40.415 | 193 | 112 | 2 | 15 | 204 | 20 | 212 | 3.66e-37 | 129 |
| MS.gene25133.t1 | MTR_2g030855 | 42.487 | 193 | 96 | 4 | 16 | 202 | 19 | 202 | 4.43e-36 | 126 |
| MS.gene25133.t1 | MTR_2g031270 | 43.243 | 185 | 90 | 4 | 24 | 202 | 28 | 203 | 1.60e-35 | 124 |
| MS.gene25133.t1 | MTR_1g023770 | 40.704 | 199 | 106 | 3 | 7 | 202 | 10 | 199 | 1.92e-35 | 124 |
| MS.gene25133.t1 | MTR_7g111240 | 47.260 | 146 | 76 | 1 | 24 | 168 | 25 | 170 | 5.03e-35 | 123 |
| MS.gene25133.t1 | MTR_6g005380 | 43.094 | 181 | 90 | 4 | 3 | 172 | 1 | 179 | 6.88e-35 | 123 |
| MS.gene25133.t1 | MTR_1g060120 | 34.158 | 202 | 124 | 3 | 11 | 204 | 18 | 218 | 2.12e-34 | 122 |
| MS.gene25133.t1 | MTR_7g111240 | 47.260 | 146 | 73 | 2 | 24 | 168 | 25 | 167 | 4.03e-34 | 121 |
| MS.gene25133.t1 | MTR_4g017040 | 38.863 | 211 | 115 | 5 | 1 | 202 | 1 | 206 | 7.27e-34 | 120 |
| MS.gene25133.t1 | MTR_5g036570 | 35.789 | 190 | 118 | 3 | 24 | 209 | 32 | 221 | 1.62e-33 | 120 |
| MS.gene25133.t1 | MTR_2g019250 | 39.336 | 211 | 111 | 6 | 4 | 202 | 1 | 206 | 3.67e-33 | 119 |
| MS.gene25133.t1 | MTR_4g017050 | 38.389 | 211 | 113 | 6 | 4 | 202 | 1 | 206 | 3.91e-33 | 119 |
| MS.gene25133.t1 | MTR_5g046410 | 38.389 | 211 | 113 | 6 | 4 | 202 | 1 | 206 | 4.40e-33 | 119 |
| MS.gene25133.t1 | MTR_5g046430 | 38.389 | 211 | 113 | 6 | 4 | 202 | 1 | 206 | 4.40e-33 | 119 |
| MS.gene25133.t1 | MTR_4g017030 | 38.389 | 211 | 113 | 6 | 4 | 202 | 1 | 206 | 4.40e-33 | 119 |
| MS.gene25133.t1 | MTR_1g085500 | 37.255 | 204 | 123 | 3 | 6 | 204 | 8 | 211 | 5.29e-33 | 118 |
| MS.gene25133.t1 | MTR_2g072560 | 51.754 | 114 | 54 | 1 | 4 | 117 | 3 | 115 | 7.01e-32 | 113 |
| MS.gene25133.t1 | MTR_1g112200 | 33.333 | 210 | 130 | 4 | 4 | 210 | 8 | 210 | 5.69e-31 | 113 |
| MS.gene25133.t1 | MTR_2g030895 | 42.424 | 165 | 88 | 3 | 42 | 202 | 7 | 168 | 4.08e-30 | 110 |
| MS.gene25133.t1 | MTR_6g005350 | 38.500 | 200 | 105 | 5 | 3 | 189 | 1 | 195 | 2.86e-29 | 108 |
| MS.gene25133.t1 | MTR_2g030865 | 42.424 | 165 | 88 | 3 | 42 | 202 | 7 | 168 | 1.35e-28 | 105 |
| MS.gene25133.t1 | MTR_8g007300 | 44.030 | 134 | 73 | 2 | 38 | 170 | 47 | 179 | 1.65e-28 | 107 |
| MS.gene25133.t1 | MTR_3g019610 | 48.515 | 101 | 51 | 1 | 7 | 107 | 6 | 105 | 9.92e-27 | 99.0 |
| MS.gene25133.t1 | MTR_2g031300 | 48.113 | 106 | 52 | 1 | 42 | 144 | 7 | 112 | 1.30e-23 | 92.4 |
| MS.gene25133.t1 | MTR_3g096330 | 32.227 | 211 | 130 | 4 | 8 | 206 | 560 | 769 | 7.89e-23 | 96.3 |
| MS.gene25133.t1 | MTR_2g086620 | 38.168 | 131 | 79 | 2 | 79 | 207 | 74 | 204 | 9.69e-20 | 83.6 |
| MS.gene25133.t1 | MTR_2g086630 | 38.168 | 131 | 79 | 2 | 79 | 207 | 74 | 204 | 1.30e-19 | 83.2 |
| MS.gene25133.t1 | MTR_2g096110 | 36.184 | 152 | 70 | 5 | 49 | 196 | 10 | 138 | 6.86e-19 | 79.7 |
| MS.gene25133.t1 | MTR_4g052770 | 37.313 | 134 | 82 | 2 | 76 | 207 | 72 | 205 | 1.20e-18 | 80.9 |
| MS.gene25133.t1 | MTR_2g086640 | 36.842 | 133 | 80 | 4 | 78 | 207 | 72 | 203 | 1.95e-18 | 80.1 |
| MS.gene25133.t1 | MTR_4g052780 | 37.313 | 134 | 82 | 2 | 76 | 207 | 72 | 205 | 2.20e-18 | 80.1 |
| MS.gene25133.t1 | MTR_7g029500 | 66.038 | 53 | 18 | 0 | 152 | 204 | 38 | 90 | 4.49e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25133.t1 | AT5G20630 | 46.445 | 211 | 111 | 2 | 1 | 210 | 1 | 210 | 1.03e-59 | 186 |
| MS.gene25133.t1 | AT1G72610 | 47.090 | 189 | 99 | 1 | 24 | 211 | 20 | 208 | 3.33e-57 | 180 |
| MS.gene25133.t1 | AT5G38960 | 45.366 | 205 | 93 | 6 | 20 | 208 | 22 | 223 | 3.33e-46 | 152 |
| MS.gene25133.t1 | AT5G38940 | 42.500 | 200 | 102 | 4 | 18 | 207 | 25 | 221 | 6.17e-42 | 141 |
| MS.gene25133.t1 | AT5G38940 | 42.500 | 200 | 102 | 4 | 18 | 207 | 49 | 245 | 1.21e-41 | 141 |
| MS.gene25133.t1 | AT5G39160 | 40.526 | 190 | 104 | 3 | 25 | 208 | 30 | 216 | 2.33e-41 | 140 |
| MS.gene25133.t1 | AT5G39110 | 45.509 | 167 | 85 | 2 | 25 | 185 | 30 | 196 | 2.41e-40 | 137 |
| MS.gene25133.t1 | AT3G04200 | 42.051 | 195 | 100 | 4 | 24 | 208 | 32 | 223 | 2.88e-40 | 137 |
| MS.gene25133.t1 | AT5G38930 | 40.394 | 203 | 108 | 4 | 15 | 207 | 22 | 221 | 6.52e-40 | 136 |
| MS.gene25133.t1 | AT5G39190 | 40.314 | 191 | 107 | 3 | 25 | 208 | 30 | 220 | 8.87e-40 | 136 |
| MS.gene25133.t1 | AT5G39120 | 41.624 | 197 | 99 | 4 | 1 | 185 | 3 | 195 | 1.03e-39 | 135 |
| MS.gene25133.t1 | AT5G39160 | 40.314 | 191 | 107 | 3 | 25 | 208 | 30 | 220 | 1.09e-39 | 135 |
| MS.gene25133.t1 | AT5G39180 | 41.026 | 195 | 101 | 3 | 1 | 185 | 5 | 195 | 1.92e-39 | 135 |
| MS.gene25133.t1 | AT5G26700 | 40.394 | 203 | 115 | 3 | 3 | 204 | 9 | 206 | 3.11e-39 | 134 |
| MS.gene25133.t1 | AT3G05950 | 46.061 | 165 | 78 | 3 | 25 | 181 | 32 | 193 | 4.94e-39 | 134 |
| MS.gene25133.t1 | AT5G39150 | 41.026 | 195 | 101 | 3 | 1 | 185 | 5 | 195 | 6.76e-39 | 134 |
| MS.gene25133.t1 | AT4G14630 | 41.538 | 195 | 98 | 4 | 25 | 207 | 32 | 222 | 1.20e-38 | 133 |
| MS.gene25133.t1 | AT5G39130 | 39.791 | 191 | 108 | 3 | 25 | 208 | 30 | 220 | 1.81e-38 | 132 |
| MS.gene25133.t1 | AT5G38910 | 42.029 | 207 | 101 | 7 | 14 | 207 | 19 | 219 | 1.85e-38 | 132 |
| MS.gene25133.t1 | AT1G18980 | 38.537 | 205 | 121 | 3 | 6 | 207 | 16 | 218 | 1.59e-37 | 130 |
| MS.gene25133.t1 | AT3G05930 | 44.149 | 188 | 101 | 3 | 24 | 207 | 28 | 215 | 3.56e-37 | 129 |
| MS.gene25133.t1 | AT1G09560 | 43.678 | 174 | 94 | 2 | 16 | 185 | 18 | 191 | 7.46e-36 | 125 |
| MS.gene25133.t1 | AT1G18970 | 37.915 | 211 | 123 | 4 | 3 | 207 | 10 | 218 | 8.81e-36 | 125 |
| MS.gene25133.t1 | AT1G02335 | 37.838 | 185 | 112 | 2 | 24 | 205 | 29 | 213 | 3.32e-35 | 124 |
| MS.gene25133.t1 | AT3G04190 | 39.267 | 191 | 109 | 3 | 24 | 207 | 31 | 221 | 5.52e-35 | 124 |
| MS.gene25133.t1 | AT5G39190 | 37.037 | 189 | 113 | 2 | 26 | 208 | 10 | 198 | 7.30e-35 | 122 |
| MS.gene25133.t1 | AT5G39160 | 37.037 | 189 | 113 | 2 | 26 | 208 | 10 | 198 | 8.86e-35 | 122 |
| MS.gene25133.t1 | AT3G04150 | 36.410 | 195 | 117 | 3 | 24 | 211 | 31 | 225 | 3.75e-34 | 122 |
| MS.gene25133.t1 | AT5G61750 | 44.118 | 136 | 75 | 1 | 38 | 172 | 40 | 175 | 6.73e-34 | 120 |
| MS.gene25133.t1 | AT3G62020 | 36.321 | 212 | 126 | 4 | 5 | 207 | 4 | 215 | 1.46e-33 | 120 |
| MS.gene25133.t1 | AT3G04150 | 36.932 | 176 | 105 | 2 | 42 | 211 | 63 | 238 | 1.49e-33 | 120 |
| MS.gene25133.t1 | AT3G04180 | 37.895 | 190 | 111 | 3 | 25 | 207 | 32 | 221 | 1.60e-31 | 114 |
| MS.gene25133.t1 | AT3G62020 | 37.931 | 174 | 104 | 3 | 38 | 207 | 13 | 186 | 4.09e-30 | 110 |
| MS.gene25133.t1 | AT3G04170 | 38.372 | 172 | 97 | 4 | 42 | 207 | 50 | 218 | 4.58e-29 | 108 |
| MS.gene25133.t1 | AT1G10460 | 35.928 | 167 | 96 | 4 | 21 | 176 | 16 | 182 | 8.55e-28 | 105 |
| MS.gene25133.t1 | AT1G74820 | 39.877 | 163 | 85 | 4 | 4 | 155 | 11 | 171 | 1.72e-27 | 104 |
| MS.gene25133.t1 | AT3G10080 | 33.854 | 192 | 116 | 4 | 24 | 207 | 31 | 219 | 2.29e-27 | 104 |
| MS.gene25133.t1 | AT3G10080 | 34.375 | 192 | 115 | 4 | 24 | 207 | 102 | 290 | 1.18e-26 | 103 |
| MS.gene25133.t1 | AT5G38910 | 33.824 | 204 | 85 | 7 | 14 | 207 | 19 | 182 | 6.76e-21 | 86.3 |
Find 34 sgRNAs with CRISPR-Local
Find 44 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAACTAGTGCTTTGTTATT+TGG | 0.151155 | 8.4:+72853963 | MS.gene25133:CDS |
| TGAAAATGTAATAGTCCTTT+TGG | 0.222682 | 8.4:-72853873 | None:intergenic |
| GAGGTTAATCCAACTTTAAA+AGG | 0.227849 | 8.4:-72853642 | None:intergenic |
| AGAATAGATATTGGTATAAA+TGG | 0.231195 | 8.4:+72853717 | MS.gene25133:CDS |
| CTCTTAACCCTGGTGATGTT+TGG | 0.270560 | 8.4:+72853844 | MS.gene25133:CDS |
| TATCACACCTACAAAACTTT+TGG | 0.293680 | 8.4:+72853815 | MS.gene25133:CDS |
| TCTTAACCCTGGTGATGTTT+GGG | 0.343326 | 8.4:+72853845 | MS.gene25133:CDS |
| TTGCTTTCAGACACCCCTTC+AGG | 0.354847 | 8.4:+72853537 | MS.gene25133:CDS |
| CATTGGAGGTAAATGAGATT+AGG | 0.367587 | 8.4:-72853479 | None:intergenic |
| ATTGGAGGTAAATGAGATTA+GGG | 0.404625 | 8.4:-72853478 | None:intergenic |
| TGCACAAATTATGAAGCTTA+AGG | 0.415304 | 8.4:+72854034 | MS.gene25133:CDS |
| ATTAGTAATTCAGTTGCATC+AGG | 0.442131 | 8.4:-72853762 | None:intergenic |
| TACTCTAGCTTAGCAGCTGC+TGG | 0.445392 | 8.4:+72853606 | MS.gene25133:CDS |
| TTTCAAGTTAACTCTGGTGC+TGG | 0.446623 | 8.4:+72853891 | MS.gene25133:CDS |
| GAATTACTAATCGTTGTTCA+AGG | 0.451387 | 8.4:+72853774 | MS.gene25133:CDS |
| AAGGATGTGTTTGGTGGCAG+TGG | 0.462003 | 8.4:+72854053 | MS.gene25133:CDS |
| ATGAAGCTTAAGGATGTGTT+TGG | 0.464532 | 8.4:+72854044 | MS.gene25133:CDS |
| TCTGCAGCAAGAATAGATAT+TGG | 0.476981 | 8.4:+72853708 | MS.gene25133:CDS |
| GCACTAGTTACATGTATGCT+AGG | 0.496669 | 8.4:-72853951 | None:intergenic |
| AGGTTAATCCAACTTTAAAA+GGG | 0.506034 | 8.4:-72853641 | None:intergenic |
| AGTAATTTACCAGGTCTCAA+TGG | 0.507923 | 8.4:+72853675 | MS.gene25133:CDS |
| ATCATCAGACTCAATAGCAT+TGG | 0.511181 | 8.4:-72853496 | None:intergenic |
| ATCAGACTCAATAGCATTGG+AGG | 0.512491 | 8.4:-72853493 | None:intergenic |
| TGTGTTTGGTGGCAGTGGCT+AGG | 0.536076 | 8.4:+72854058 | MS.gene25133:CDS |
| CACTAGTTACATGTATGCTA+GGG | 0.551616 | 8.4:-72853950 | None:intergenic |
| GATTTGCATGGATAACCTGA+AGG | 0.562918 | 8.4:-72853552 | None:intergenic |
| AAGCTTAAGGATGTGTTTGG+TGG | 0.598066 | 8.4:+72854047 | MS.gene25133:CDS |
| TTGGTGAAAACTCTTAACCC+TGG | 0.612922 | 8.4:+72853834 | MS.gene25133:CDS |
| GTAAATGTCAGTAATTTACC+AGG | 0.629129 | 8.4:+72853666 | MS.gene25133:CDS |
| AACTTAAGTCCATTGAGACC+TGG | 0.634682 | 8.4:-72853684 | None:intergenic |
| TAAATTACTGACATTTACTG+AGG | 0.644593 | 8.4:-72853661 | None:intergenic |
| GCATCAGGATGAGTGTGCAT+TGG | 0.654477 | 8.4:-72853747 | None:intergenic |
| ATTTGCATGGATAACCTGAA+GGG | 0.657926 | 8.4:-72853551 | None:intergenic |
| TTTGCATGGATAACCTGAAG+GGG | 0.726823 | 8.4:-72853550 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATAGATATTGGTATAAA+TGG | + | chr8.4:72853717-72853736 | MS.gene25133:CDS | 20.0% |
| !! | CAAAAAAGAAAAGAACAATT+CGG | - | chr8.4:72853458-72853477 | None:intergenic | 20.0% |
| ! | TAAATTACTGACATTTACTG+AGG | - | chr8.4:72853664-72853683 | None:intergenic | 25.0% |
| !! | AGGTTAATCCAACTTTAAAA+GGG | - | chr8.4:72853644-72853663 | None:intergenic | 25.0% |
| !! | TGAAAATGTAATAGTCCTTT+TGG | - | chr8.4:72853876-72853895 | None:intergenic | 25.0% |
| !!! | ACAAATTTTTCTGATTTGCA+TGG | - | chr8.4:72853567-72853586 | None:intergenic | 25.0% |
| !!! | TTACATTTTCAAGTTAACTC+TGG | + | chr8.4:72853885-72853904 | MS.gene25133:CDS | 25.0% |
| ATTAGTAATTCAGTTGCATC+AGG | - | chr8.4:72853765-72853784 | None:intergenic | 30.0% | |
| ATTGGAGGTAAATGAGATTA+GGG | - | chr8.4:72853481-72853500 | None:intergenic | 30.0% | |
| GAATTACTAATCGTTGTTCA+AGG | + | chr8.4:72853774-72853793 | MS.gene25133:CDS | 30.0% | |
| GAGGTTAATCCAACTTTAAA+AGG | - | chr8.4:72853645-72853664 | None:intergenic | 30.0% | |
| GTAAATGTCAGTAATTTACC+AGG | + | chr8.4:72853666-72853685 | MS.gene25133:CDS | 30.0% | |
| TGCACAAATTATGAAGCTTA+AGG | + | chr8.4:72854034-72854053 | MS.gene25133:CDS | 30.0% | |
| ! | AAGAGTAGTCTTTTGAATTG+TGG | - | chr8.4:72854006-72854025 | None:intergenic | 30.0% |
| ! | TATCACACCTACAAAACTTT+TGG | + | chr8.4:72853815-72853834 | MS.gene25133:CDS | 30.0% |
| !! | GTAACTAGTGCTTTGTTATT+TGG | + | chr8.4:72853963-72853982 | MS.gene25133:CDS | 30.0% |
| !! | GTTTTCACCAAAAGTTTTGT+AGG | - | chr8.4:72853825-72853844 | None:intergenic | 30.0% |
| !!! | GTTCAAGGTCAATTTTTTGT+TGG | + | chr8.4:72853789-72853808 | MS.gene25133:CDS | 30.0% |
| AGTAATTTACCAGGTCTCAA+TGG | + | chr8.4:72853675-72853694 | MS.gene25133:CDS | 35.0% | |
| ATCATCAGACTCAATAGCAT+TGG | - | chr8.4:72853499-72853518 | None:intergenic | 35.0% | |
| ATGAAGCTTAAGGATGTGTT+TGG | + | chr8.4:72854044-72854063 | MS.gene25133:CDS | 35.0% | |
| ATTTGCATGGATAACCTGAA+GGG | - | chr8.4:72853554-72853573 | None:intergenic | 35.0% | |
| CACTAGTTACATGTATGCTA+GGG | - | chr8.4:72853953-72853972 | None:intergenic | 35.0% | |
| CATTGGAGGTAAATGAGATT+AGG | - | chr8.4:72853482-72853501 | None:intergenic | 35.0% | |
| TCTGCAGCAAGAATAGATAT+TGG | + | chr8.4:72853708-72853727 | MS.gene25133:CDS | 35.0% | |
| ! | GTCTTTTGAATTGTGGAAGT+TGG | - | chr8.4:72853999-72854018 | None:intergenic | 35.0% |
| !! | GATGTTTGGGTTTTTCCAAA+AGG | + | chr8.4:72853858-72853877 | MS.gene25133:CDS | 35.0% |
| !!! | ACAGCAAACCCTTTTAAAGT+TGG | + | chr8.4:72853633-72853652 | MS.gene25133:CDS | 35.0% |
| AACTTAAGTCCATTGAGACC+TGG | - | chr8.4:72853687-72853706 | None:intergenic | 40.0% | |
| AAGCTTAAGGATGTGTTTGG+TGG | + | chr8.4:72854047-72854066 | MS.gene25133:CDS | 40.0% | |
| GAAAAACCCAAACATCACCA+GGG | - | chr8.4:72853854-72853873 | None:intergenic | 40.0% | |
| GATTTGCATGGATAACCTGA+AGG | - | chr8.4:72853555-72853574 | None:intergenic | 40.0% | |
| GCACTAGTTACATGTATGCT+AGG | - | chr8.4:72853954-72853973 | None:intergenic | 40.0% | |
| TTGGTGAAAACTCTTAACCC+TGG | + | chr8.4:72853834-72853853 | MS.gene25133:CDS | 40.0% | |
| TTTGCATGGATAACCTGAAG+GGG | - | chr8.4:72853553-72853572 | None:intergenic | 40.0% | |
| ! | ATCAGACTCAATAGCATTGG+AGG | - | chr8.4:72853496-72853515 | None:intergenic | 40.0% |
| ! | TCTTAACCCTGGTGATGTTT+GGG | + | chr8.4:72853845-72853864 | MS.gene25133:CDS | 40.0% |
| !! | TTTCAAGTTAACTCTGGTGC+TGG | + | chr8.4:72853891-72853910 | MS.gene25133:CDS | 40.0% |
| GGAAAAACCCAAACATCACC+AGG | - | chr8.4:72853855-72853874 | None:intergenic | 45.0% | |
| ! | CTCTTAACCCTGGTGATGTT+TGG | + | chr8.4:72853844-72853863 | MS.gene25133:CDS | 45.0% |
| GCATCAGGATGAGTGTGCAT+TGG | - | chr8.4:72853750-72853769 | None:intergenic | 50.0% | |
| TTGCTTTCAGACACCCCTTC+AGG | + | chr8.4:72853537-72853556 | MS.gene25133:CDS | 50.0% | |
| ! | AAGGATGTGTTTGGTGGCAG+TGG | + | chr8.4:72854053-72854072 | MS.gene25133:CDS | 50.0% |
| ! | TACTCTAGCTTAGCAGCTGC+TGG | + | chr8.4:72853606-72853625 | MS.gene25133:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 72853444 | 72854079 | 72853444 | ID=MS.gene25133 |
| chr8.4 | mRNA | 72853444 | 72854079 | 72853444 | ID=MS.gene25133.t1;Parent=MS.gene25133 |
| chr8.4 | exon | 72853444 | 72854079 | 72853444 | ID=MS.gene25133.t1.exon1;Parent=MS.gene25133.t1 |
| chr8.4 | CDS | 72853444 | 72854079 | 72853444 | ID=cds.MS.gene25133.t1;Parent=MS.gene25133.t1 |
| Gene Sequence |
| Protein sequence |
