Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25308.t1 | RHN41243.1 | 98.3 | 286 | 5 | 0 | 1 | 286 | 1 | 286 | 1.80E-160 | 575.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25308.t1 | Q56XY2 | 84.0 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.4e-140 | 500.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25308.t1 | G7LEM4 | 98.3 | 286 | 5 | 0 | 1 | 286 | 1 | 286 | 1.3e-160 | 575.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70743 | MS.gene25308 | PPI |
| MS.gene061152 | MS.gene25308 | PPI |
| MS.gene49124 | MS.gene25308 | PPI |
| MS.gene34135 | MS.gene25308 | PPI |
| MS.gene25822 | MS.gene25308 | PPI |
| MS.gene006260 | MS.gene25308 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25308.t1 | MTR_8g062340 | 98.252 | 286 | 5 | 0 | 1 | 286 | 1 | 286 | 0.0 | 578 |
| MS.gene25308.t1 | MTR_8g062340 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 569 |
| MS.gene25308.t1 | MTR_5g089950 | 94.097 | 288 | 17 | 0 | 1 | 288 | 1 | 288 | 0.0 | 559 |
| MS.gene25308.t1 | MTR_3g080040 | 39.300 | 257 | 148 | 4 | 1 | 256 | 1 | 250 | 6.58e-57 | 184 |
| MS.gene25308.t1 | MTR_1g100240 | 30.688 | 189 | 122 | 3 | 6 | 190 | 61 | 244 | 1.91e-19 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25308.t1 | AT5G22370 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 5.93e-177 | 490 |
| MS.gene25308.t1 | AT5G22370 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 5.93e-177 | 490 |
| MS.gene25308.t1 | AT5G22370 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 5.93e-177 | 490 |
| MS.gene25308.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene25308.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene25308.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene25308.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene25308.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene25308.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene25308.t1 | AT4G21800 | 29.570 | 186 | 128 | 2 | 6 | 190 | 45 | 228 | 7.83e-18 | 83.2 |
| MS.gene25308.t1 | AT4G21800 | 29.570 | 186 | 128 | 2 | 6 | 190 | 45 | 228 | 7.83e-18 | 83.2 |
Find 0 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATCTATATTTATTATTA+AGG | - | 57428:24780-24799 | MS.gene25308:intergenic | 10.0% |
| !! | AAATTAACTGTTATATTGAA+TGG | + | 57428:25579-25598 | MS.gene25308:intron | 15.0% |
| !! | AATTAACTGTTATATTGAAT+GGG | + | 57428:25580-25599 | MS.gene25308:intron | 15.0% |
| !! | CAAATAAGAAAATAAAACTT+AGG | - | 57428:26834-26853 | MS.gene25308:intergenic | 15.0% |
| !! | CATAAAGAAATTAACTTTAA+GGG | + | 57428:26254-26273 | MS.gene25308:CDS | 15.0% |
| !! | TATAGTTAAGTTAATTGATA+TGG | + | 57428:24750-24769 | MS.gene25308:intron | 15.0% |
| !! | TATTTGAGAAATTATTAAGA+AGG | + | 57428:25158-25177 | MS.gene25308:intron | 15.0% |
| !! | TCATAAAGAAATTAACTTTA+AGG | + | 57428:26253-26272 | MS.gene25308:CDS | 15.0% |
| !!! | AATATTGTTGTTATTCTTAA+AGG | + | 57428:24708-24727 | MS.gene25308:intron | 15.0% |
| !!! | AGTTTTTTTTTAATGGTAAA+TGG | - | 57428:25139-25158 | MS.gene25308:intergenic | 15.0% |
| !!! | CTCAAATAGTTTTTTTTTAA+TGG | - | 57428:25146-25165 | MS.gene25308:intergenic | 15.0% |
| !! | AAAAAAAACTGTGTATCTTA+AGG | - | 57428:27366-27385 | MS.gene25308:intergenic | 20.0% |
| !! | AATACTTAAAACAACCAAAA+AGG | - | 57428:24889-24908 | MS.gene25308:intergenic | 20.0% |
| !! | AGAGATACTAATGTAAAATA+TGG | + | 57428:27125-27144 | MS.gene25308:intron | 20.0% |
| !! | ATAAAATATTAACCAAATCG+TGG | - | 57428:27174-27193 | MS.gene25308:intergenic | 20.0% |
| !! | ATAACAACAATATTTCAAAG+AGG | - | 57428:24702-24721 | MS.gene25308:intergenic | 20.0% |
| !! | ATACCTAAATTAGTAGAAAT+TGG | - | 57428:24584-24603 | MS.gene25308:intergenic | 20.0% |
| !! | TAATGAAATCAAATATATGC+TGG | + | 57428:27239-27258 | MS.gene25308:intron | 20.0% |
| !! | TACGAACAAAAGAAAAAATT+AGG | - | 57428:27519-27538 | MS.gene25308:intergenic | 20.0% |
| !! | TTATAAGCTGCTAATATAAA+AGG | - | 57428:27222-27241 | MS.gene25308:intergenic | 20.0% |
| !! | TTTCCAATTTCTACTAATTT+AGG | + | 57428:24578-24597 | MS.gene25308:intron | 20.0% |
| !!! | AGGAAACTACATTTTAATAA+AGG | - | 57428:26814-26833 | MS.gene25308:intergenic | 20.0% |
| !!! | ATTTTCATTTATGCAGTTAA+CGG | + | 57428:26335-26354 | MS.gene25308:intron | 20.0% |
| !!! | CAAATTAGTTCTTGAAATAA+TGG | - | 57428:26314-26333 | MS.gene25308:intergenic | 20.0% |
| !!! | TTAAATGCATTTTTTTAAGC+TGG | + | 57428:26536-26555 | MS.gene25308:intron | 20.0% |
| !!! | TTAAGTTGTTAATCAAAACA+GGG | - | 57428:25636-25655 | MS.gene25308:intergenic | 20.0% |
| !!! | TTTTACAACATTAGATATTC+AGG | + | 57428:27480-27499 | MS.gene25308:CDS | 20.0% |
| ! | AAGAAAAAATTAGGCATATC+TGG | - | 57428:27510-27529 | MS.gene25308:intergenic | 25.0% |
| ! | AGTGCATTTAAGGATAATTT+AGG | - | 57428:26084-26103 | MS.gene25308:intergenic | 25.0% |
| ! | ATCTAGAGAAAAATATTGAC+TGG | + | 57428:25989-26008 | MS.gene25308:CDS | 25.0% |
| ! | CAATATTTCAAAGAGGTTAA+TGG | - | 57428:24695-24714 | MS.gene25308:intergenic | 25.0% |
| ! | CAATTTAATATGGCATGAAA+TGG | - | 57428:27078-27097 | MS.gene25308:intergenic | 25.0% |
| ! | CATAGACAAGACAAATAAAA+GGG | - | 57428:27051-27070 | MS.gene25308:intergenic | 25.0% |
| ! | GAAGAACTAGAAAAACTATT+GGG | + | 57428:24993-25012 | MS.gene25308:intron | 25.0% |
| ! | TATCTATAATAATCCCAATC+AGG | - | 57428:27697-27716 | MS.gene25308:intergenic | 25.0% |
| ! | TGTATAAAAATCAAGGTTGA+AGG | - | 57428:26613-26632 | MS.gene25308:intergenic | 25.0% |
| ! | TTAATATTTACTCTTTCGTC+CGG | - | 57428:25098-25117 | MS.gene25308:intergenic | 25.0% |
| ! | TTAGTTTATTTGAGCTTATC+TGG | - | 57428:25876-25895 | MS.gene25308:intergenic | 25.0% |
| ! | TTCACAGCAACAATTTAATA+TGG | - | 57428:27088-27107 | MS.gene25308:intergenic | 25.0% |
| !! | ATAAGTACTTGTGAGATTTT+TGG | - | 57428:25852-25871 | MS.gene25308:intergenic | 25.0% |
| !! | ATTGATTTAATTGAGAGCTA+CGG | + | 57428:26477-26496 | MS.gene25308:CDS | 25.0% |
| !! | GTTAAGTTGTTAATCAAAAC+AGG | - | 57428:25637-25656 | MS.gene25308:intergenic | 25.0% |
| !! | TGGTTAAGTTTGGTTTAAAT+GGG | + | 57428:27300-27319 | MS.gene25308:intron | 25.0% |
| !! | TTTTGACAAGACATTTATGT+GGG | - | 57428:26457-26476 | MS.gene25308:intergenic | 25.0% |
| !! | TTTTTGACAAGACATTTATG+TGG | - | 57428:26458-26477 | MS.gene25308:intergenic | 25.0% |
| !!! | ACTATTTTTATAAGCTGTCA+TGG | + | 57428:25760-25779 | MS.gene25308:intron | 25.0% |
| AAATTGAAACCTCTTCTGAA+AGG | + | 57428:26021-26040 | MS.gene25308:CDS | 30.0% | |
| AACTAGAAAAACTATTGGGT+GGG | + | 57428:24997-25016 | MS.gene25308:intron | 30.0% | |
| AAGACAAATAAAAGGGCAAA+GGG | - | 57428:27044-27063 | MS.gene25308:intergenic | 30.0% | |
| AGAGTACATCAAATCAATAG+AGG | + | 57428:24965-24984 | MS.gene25308:intron | 30.0% | |
| ATGTAATAACCTTTCAGAAG+AGG | - | 57428:26033-26052 | MS.gene25308:intergenic | 30.0% | |
| ATTTCAAAGAGGTTAATGGA+AGG | - | 57428:24691-24710 | MS.gene25308:intergenic | 30.0% | |
| GAAGAAAAAATAGTTCCACT+TGG | - | 57428:26203-26222 | MS.gene25308:intergenic | 30.0% | |
| GCACATCTGTATAAAAATCA+AGG | - | 57428:26620-26639 | MS.gene25308:intergenic | 30.0% | |
| GCATAGACAAGACAAATAAA+AGG | - | 57428:27052-27071 | MS.gene25308:intergenic | 30.0% | |
| GGAAGAACTAGAAAAACTAT+TGG | + | 57428:24992-25011 | MS.gene25308:intron | 30.0% | |
| GTTCAGTAGAAATTCTAAGT+TGG | + | 57428:27545-27564 | MS.gene25308:intron | 30.0% | |
| TAATATTTACTCTTTCGTCC+GGG | - | 57428:25097-25116 | MS.gene25308:intergenic | 30.0% | |
| TGTTTAATGTCATAACCAAG+AGG | + | 57428:24931-24950 | MS.gene25308:intron | 30.0% | |
| TTTATTTGTCTTGTCTATGC+TGG | + | 57428:27052-27071 | MS.gene25308:intron | 30.0% | |
| TTTGACAAGACATTTATGTG+GGG | - | 57428:26456-26475 | MS.gene25308:intergenic | 30.0% | |
| ! | AAGTTGGATTATCCTTTTAC+AGG | + | 57428:27561-27580 | MS.gene25308:intron | 30.0% |
| ! | AGAGAAAAATATTGACTGGT+TGG | + | 57428:25993-26012 | MS.gene25308:CDS | 30.0% |
| ! | GTGGTTAAGTTTGGTTTAAA+TGG | + | 57428:27299-27318 | MS.gene25308:intron | 30.0% |
| ! | TAATTTTCCTCGTTTGCAAA+TGG | + | 57428:27277-27296 | MS.gene25308:intron | 30.0% |
| ! | TGATTACACATTTGAAGTGT+AGG | + | 57428:25312-25331 | MS.gene25308:intron | 30.0% |
| !! | GAGATTTTTGGAAGAACTTA+TGG | - | 57428:25840-25859 | MS.gene25308:intergenic | 30.0% |
| !! | GGCTCTAATAAAAGGTATTA+AGG | - | 57428:25615-25634 | MS.gene25308:intergenic | 30.0% |
| !! | GTAATTACTTTTGCAAGCTA+GGG | + | 57428:26513-26532 | MS.gene25308:intron | 30.0% |
| !! | GTTTTCTACTTTTCAAATGC+AGG | + | 57428:24617-24636 | MS.gene25308:intron | 30.0% |
| !! | TATCTACTCTTTGATTTTCC+TGG | + | 57428:26177-26196 | MS.gene25308:CDS | 30.0% |
| !! | TGTAATTACTTTTGCAAGCT+AGG | + | 57428:26512-26531 | MS.gene25308:intron | 30.0% |
| AACTAATCTAAACAGACCCT+AGG | + | 57428:25890-25909 | MS.gene25308:intron | 35.0% | |
| AAGAGGTTAATGGAAGGATA+CGG | - | 57428:24685-24704 | MS.gene25308:intergenic | 35.0% | |
| AAGCTGATAGACAAAACCAA+TGG | + | 57428:27610-27629 | MS.gene25308:CDS | 35.0% | |
| ACAGTAAGACACAAATACCT+AGG | - | 57428:25910-25929 | MS.gene25308:intergenic | 35.0% | |
| ACTAGAAAAACTATTGGGTG+GGG | + | 57428:24998-25017 | MS.gene25308:intron | 35.0% | |
| AGAGATTAATGAGATGGACA+GGG | + | 57428:25185-25204 | MS.gene25308:intron | 35.0% | |
| AGCTGATAGACAAAACCAAT+GGG | + | 57428:27611-27630 | MS.gene25308:CDS | 35.0% | |
| ATGTTTCAGTGTTAATGGTG+TGG | + | 57428:25460-25479 | MS.gene25308:intron | 35.0% | |
| ATTCTCTCTTTCTCTCTATG+CGG | + | 57428:27192-27211 | MS.gene25308:intron | 35.0% | |
| ATTTGTCTTGTCTATGCTGA+GGG | + | 57428:26849-26868 | MS.gene25308:intron | 35.0% | |
| CAAGACAAATAAAAGGGCAA+AGG | - | 57428:27045-27064 | MS.gene25308:intergenic | 35.0% | |
| CAGTAAGACACAAATACCTA+GGG | - | 57428:25909-25928 | MS.gene25308:intergenic | 35.0% | |
| CATATGTAGCATTGTGGATA+AGG | - | 57428:26427-26446 | MS.gene25308:intergenic | 35.0% | |
| CATCAAATCAATAGAGGTAG+AGG | + | 57428:24971-24990 | MS.gene25308:intron | 35.0% | |
| CGTCTATGTTTCAGTGTTAA+TGG | + | 57428:25455-25474 | MS.gene25308:intron | 35.0% | |
| CTAGAGTAGTTTAGCTGAAT+AGG | - | 57428:26124-26143 | MS.gene25308:intergenic | 35.0% | |
| CTTATCCACAATGCTACATA+TGG | + | 57428:26425-26444 | MS.gene25308:CDS | 35.0% | |
| GAACTAGAAAAACTATTGGG+TGG | + | 57428:24996-25015 | MS.gene25308:intron | 35.0% | |
| GAGTTTAGCAAGATTGCTAT+GGG | + | 57428:27667-27686 | MS.gene25308:CDS | 35.0% | |
| GAGTTTCATGATGACATTCT+TGG | - | 57428:26235-26254 | MS.gene25308:intergenic | 35.0% | |
| GGATCTAGAGATTAATGAGA+TGG | + | 57428:25179-25198 | MS.gene25308:intron | 35.0% | |
| GGCAAAACAACTTACTGTAA+TGG | + | 57428:24467-24486 | MS.gene25308:CDS | 35.0% | |
| GTCATGATAGAACATTCTCT+TGG | + | 57428:24841-24860 | MS.gene25308:CDS | 35.0% | |
| GTGTAATCACACAGAACTAT+TGG | - | 57428:25301-25320 | MS.gene25308:intergenic | 35.0% | |
| TAGAGATTAATGAGATGGAC+AGG | + | 57428:25184-25203 | MS.gene25308:intron | 35.0% | |
| TAGTTCCATATGTAGCATTG+TGG | - | 57428:26433-26452 | MS.gene25308:intergenic | 35.0% | |
| TATCTGTGTTAGTGTTTCAG+AGG | + | 57428:25493-25512 | MS.gene25308:intron | 35.0% | |
| TATTTGCAGAAAGCTCACAA+AGG | + | 57428:27420-27439 | MS.gene25308:intron | 35.0% | |
| TATTTGTCTTGTCTATGCTG+AGG | + | 57428:26848-26867 | MS.gene25308:intron | 35.0% | |
| TGAAATAATGGTTCGACACT+AGG | - | 57428:26302-26321 | MS.gene25308:intergenic | 35.0% | |
| TGAGTTTAGCAAGATTGCTA+TGG | + | 57428:27666-27685 | MS.gene25308:CDS | 35.0% | |
| TTAATGTCATAACCAAGAGG+AGG | + | 57428:24934-24953 | MS.gene25308:intron | 35.0% | |
| TTGCAAATGGTGGTTAAGTT+TGG | + | 57428:27290-27309 | MS.gene25308:intron | 35.0% | |
| ! | CAAAACAGGGCTCTAATAAA+AGG | - | 57428:25623-25642 | MS.gene25308:intergenic | 35.0% |
| ! | GAGGTAAGTCTATTCCTTTT+TGG | + | 57428:24872-24891 | MS.gene25308:intron | 35.0% |
| ! | GTAGTTTGTGAGTGCATTTA+AGG | - | 57428:26094-26113 | MS.gene25308:intergenic | 35.0% |
| ! | TCTCAGTTTCTCAGTCTTAT+TGG | + | 57428:24494-24513 | MS.gene25308:CDS | 35.0% |
| ! | TGAATGTGCTGTTAACATTG+AGG | + | 57428:24798-24817 | MS.gene25308:CDS | 35.0% |
| !! | AGTTTCTCAGTCTTATTGGA+AGG | + | 57428:24498-24517 | MS.gene25308:CDS | 35.0% |
| !! | TCTACTTTTCAAATGCAGGA+AGG | + | 57428:24621-24640 | MS.gene25308:intron | 35.0% |
| AAAAATAGTTCCACTTGGCC+AGG | - | 57428:26198-26217 | MS.gene25307:intergenic | 40.0% | |
| AACAGTCTCTTGTGTAAGAC+AGG | + | 57428:26938-26957 | MS.gene25308:intron | 40.0% | |
| AAGCTGTCATGGAGAACTTA+TGG | + | 57428:25771-25790 | MS.gene25308:intron | 40.0% | |
| ACAGTCTCTTGTGTAAGACA+GGG | + | 57428:26939-26958 | MS.gene25308:intron | 40.0% | |
| ACCAATGGGTACATATTTGC+CGG | + | 57428:27625-27644 | MS.gene25308:CDS | 40.0% | |
| AGCTGTCATGGAGAACTTAT+GGG | + | 57428:25772-25791 | MS.gene25308:intron | 40.0% | |
| CACTCTCTTTGTCCTGTAAA+AGG | - | 57428:27576-27595 | MS.gene25308:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | 57428:26970-26989 | MS.gene25308:intron | 40.0% | |
| CTAGAAAAACTATTGGGTGG+GGG | + | 57428:24999-25018 | MS.gene25308:intron | 40.0% | |
| GAACACGCTTACAATCTGAA+AGG | - | 57428:25363-25382 | MS.gene25308:intergenic | 40.0% | |
| GAACATTCTCTTGGTCCTAA+CGG | + | 57428:24850-24869 | MS.gene25308:CDS | 40.0% | |
| GAGATTAATGAGATGGACAG+GGG | + | 57428:25186-25205 | MS.gene25308:intron | 40.0% | |
| GATGACAATACTCCACGATT+TGG | + | 57428:27159-27178 | MS.gene25308:intron | 40.0% | |
| GTGTTTGGGCAAGTAGTAAT+TGG | + | 57428:24431-24450 | MS.gene25308:CDS | 40.0% | |
| GTTCATAGGGGATAAAGAGT+TGG | + | 57428:25055-25074 | MS.gene25308:intron | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | + | 57428:26895-26914 | MS.gene25308:intron | 40.0% | |
| TACGGTAACGAATCATTAGC+AGG | - | 57428:24667-24686 | MS.gene25308:intergenic | 40.0% | |
| TAGAAAAACTATTGGGTGGG+GGG | + | 57428:25000-25019 | MS.gene25308:intron | 40.0% | |
| TGAAGGCTGCAACAATGAAA+TGG | - | 57428:26596-26615 | MS.gene25308:intergenic | 40.0% | |
| TGTTAGTGTTTCAGAGGTGA+TGG | + | 57428:25499-25518 | MS.gene25308:intron | 40.0% | |
| TTAACCACCATTTGCAAACG+AGG | - | 57428:27287-27306 | MS.gene25308:intergenic | 40.0% | |
| TTACACAAGAGACTGTTTCC+AGG | - | 57428:26935-26954 | MS.gene25308:intergenic | 40.0% | |
| TTCACTTGTGTTGTACAAGC+AGG | + | 57428:25946-25965 | MS.gene25308:intron | 40.0% | |
| TTTGTCTTGTCTATGCTGAG+GGG | + | 57428:26850-26869 | MS.gene25308:intron | 40.0% | |
| ! | ACACATTTGAAGTGTAGGCA+TGG | + | 57428:25317-25336 | MS.gene25308:intron | 40.0% |
| ! | AGCAGGTCTTGTATACTGTA+TGG | + | 57428:25963-25982 | MS.gene25308:intron | 40.0% |
| ! | CACATTTGAAGTGTAGGCAT+GGG | + | 57428:25318-25337 | MS.gene25308:intron | 40.0% |
| ! | GAAGGTTGCTGTTGTCAATT+TGG | + | 57428:24639-24658 | MS.gene25308:CDS | 40.0% |
| ! | TACAGGACAAAGAGAGTGTA+GGG | + | 57428:27578-27597 | MS.gene25308:intron | 40.0% |
| ! | TGGGTGATGGTATATAGCAT+CGG | + | 57428:25337-25356 | MS.gene25308:intron | 40.0% |
| ! | TTACAGGACAAAGAGAGTGT+AGG | + | 57428:27577-27596 | MS.gene25308:intron | 40.0% |
| ! | TTTTCCTCGTTTGCAAATGG+TGG | + | 57428:27280-27299 | MS.gene25308:intron | 40.0% |
| AACTGCACTTGCATCTATGC+CGG | - | 57428:27647-27666 | MS.gene25308:intergenic | 45.0% | |
| AGAAAAACTATTGGGTGGGG+GGG | + | 57428:25001-25020 | MS.gene25308:intron | 45.0% | |
| ATCCTCACTCTGCTAAGTAC+AGG | + | 57428:26676-26695 | MS.gene25308:CDS | 45.0% | |
| ATTGAGAGCTACGGAAAGCT+AGG | + | 57428:26486-26505 | MS.gene25308:CDS | 45.0% | |
| CAAGTAGTAATTGGTCCTCC+TGG | + | 57428:24440-24459 | MS.gene25308:CDS | 45.0% | |
| CATAGGGGATAAAGAGTTGG+AGG | + | 57428:25058-25077 | MS.gene25308:intron | 45.0% | |
| CTCTTGTGTAAGACAGGGTA+AGG | + | 57428:26944-26963 | MS.gene25308:intron | 45.0% | |
| CTTATCCCACTAAGTGGGAT+CGG | - | 57428:25256-25275 | MS.gene25308:intergenic | 45.0% | |
| GATCGGCTACATGGATCAAA+CGG | - | 57428:25239-25258 | MS.gene25308:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | 57428:26969-26988 | MS.gene25308:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | 57428:26966-26985 | MS.gene25308:intron | 45.0% | |
| GGAATAGACTTACCTCCGTT+AGG | - | 57428:24868-24887 | MS.gene25308:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | + | 57428:26901-26920 | MS.gene25308:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | + | 57428:26902-26921 | MS.gene25308:intron | 45.0% | |
| TGTCATAACCAAGAGGAGGT+CGG | + | 57428:24938-24957 | MS.gene25308:intron | 45.0% | |
| TTTCGTCCGGGTTTAAACTC+AGG | - | 57428:25085-25104 | MS.gene25308:intergenic | 45.0% | |
| ! | AATGCACTGATGTACTTCCC+AGG | - | 57428:26396-26415 | MS.gene25308:intergenic | 45.0% |
| ! | ATGCACTGATGTACTTCCCA+GGG | - | 57428:26395-26414 | MS.gene25308:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | 57428:25261-25280 | MS.gene25308:intergenic | 45.0% |
| ! | TACAGGTGTGCTTTGTTGTG+TGG | + | 57428:26693-26712 | MS.gene25308:intron | 45.0% |
| !! | CTTTGATTTTCCTGGCCAAG+TGG | + | 57428:26185-26204 | MS.gene25308:CDS | 45.0% |
| !! | GTTGGGTTGGGTAGTTCATA+GGG | + | 57428:25042-25061 | MS.gene25308:intron | 45.0% |
| !! | TAAGTTGTTTTGCCAGAGCC+AGG | - | 57428:24461-24480 | MS.gene25308:intergenic | 45.0% |
| !! | TTGGGTTGGGTAGTTCATAG+GGG | + | 57428:25043-25062 | MS.gene25308:intron | 45.0% |
| ACTAAGTGGGATCGGCTACA+TGG | - | 57428:25248-25267 | MS.gene25308:intergenic | 50.0% | |
| ACTTCCCAGGGTCACTACAA+AGG | - | 57428:26383-26402 | MS.gene25308:intergenic | 50.0% | |
| ATGTAGCCGATCCCACTTAG+TGG | + | 57428:25247-25266 | MS.gene25308:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | 57428:26879-26898 | MS.gene25308:intergenic | 50.0% | |
| CACCTGTACTTAGCAGAGTG+AGG | - | 57428:26681-26700 | MS.gene25308:intergenic | 50.0% | |
| CATTCTCTTGGTCCTAACGG+AGG | + | 57428:24853-24872 | MS.gene25308:CDS | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | 57428:25259-25278 | MS.gene25308:intron | 50.0% | |
| CGATCCCACTTAGTGGGATA+AGG | + | 57428:25254-25273 | MS.gene25308:intron | 50.0% | |
| CTCACCTTTGTAGTGACCCT+GGG | + | 57428:26376-26395 | MS.gene25308:CDS | 50.0% | |
| GCAGTTAACGGCAGTGCATT+TGG | + | 57428:26347-26366 | MS.gene25308:intron | 50.0% | |
| GCCGGCAAATATGTACCCAT+TGG | - | 57428:27629-27648 | MS.gene25308:intergenic | 50.0% | |
| GGAGGTCCTGAGTTTAAACC+CGG | + | 57428:25076-25095 | MS.gene25308:intron | 50.0% | |
| TAAAAGGGCAAAGGGCAACC+CGG | - | 57428:27036-27055 | MS.gene25308:intergenic | 50.0% | |
| TCTATGCTGAGGGGTAACCT+TGG | + | 57428:26859-26878 | MS.gene25308:intron | 50.0% | |
| TGAAGTGTAGGCATGGGTGA+TGG | + | 57428:25324-25343 | MS.gene25308:intron | 50.0% | |
| TGCTATGGGAGCTCCTGATT+GGG | + | 57428:27681-27700 | MS.gene25308:CDS | 50.0% | |
| TGTAGCCGATCCCACTTAGT+GGG | + | 57428:25248-25267 | MS.gene25308:intron | 50.0% | |
| TTGCTATGGGAGCTCCTGAT+TGG | + | 57428:27680-27699 | MS.gene25308:CDS | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | 57428:25262-25281 | MS.gene25308:intergenic | 50.0% |
| !! | GGTTGGGTTGGGTAGTTCAT+AGG | + | 57428:25041-25060 | MS.gene25308:intron | 50.0% |
| AAACTATTGGGTGGGGGGGA+TGG | + | 57428:25005-25024 | MS.gene25308:intron | 55.0% | |
| AACTATTGGGTGGGGGGGAT+GGG | + | 57428:25006-25025 | MS.gene25308:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | 57428:26914-26933 | MS.gene25308:intron | 55.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | - | 57428:27010-27029 | MS.gene25308:intergenic | 55.0% | |
| CATATGCAGGGTCTGGGAAG+GGG | - | 57428:26997-27016 | MS.gene25308:intergenic | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | - | 57428:27009-27028 | MS.gene25308:intergenic | 55.0% | |
| CTCTCAATCCGACCTCCTCT+TGG | - | 57428:24949-24968 | MS.gene25308:intergenic | 55.0% | |
| CTTCCCAGACCCTGCATATG+CGG | + | 57428:26997-27016 | MS.gene25308:intron | 55.0% | |
| GCATATGCAGGGTCTGGGAA+GGG | - | 57428:26998-27017 | MS.gene25308:intergenic | 55.0% | |
| GCTCACCTTTGTAGTGACCC+TGG | + | 57428:26375-26394 | MS.gene25308:CDS | 55.0% | |
| GTAATTGGTCCTCCTGGCTC+TGG | + | 57428:24446-24465 | MS.gene25308:CDS | 55.0% | |
| TTCCCAGACCCTGCATATGC+GGG | + | 57428:26998-27017 | MS.gene25308:intron | 55.0% | |
| !! | GTTGTTTTGCCAGAGCCAGG+AGG | - | 57428:24458-24477 | MS.gene25308:intergenic | 55.0% |
| ACTATTGGGTGGGGGGGATG+GGG | + | 57428:25007-25026 | MS.gene25308:intron | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | + | 57428:26868-26887 | MS.gene25308:intron | 60.0% | |
| CGCATATGCAGGGTCTGGGA+AGG | - | 57428:26999-27018 | MS.gene25308:intergenic | 60.0% | |
| CTCCCGCATATGCAGGGTCT+GGG | - | 57428:27003-27022 | MS.gene25308:intergenic | 60.0% | |
| TGGGAAGGGGTCCCACCATT+TGG | - | 57428:26984-27003 | MS.gene25308:intergenic | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | + | 57428:27014-27033 | MS.gene25308:intron | 60.0% |
| GCTCCCGCATATGCAGGGTC+TGG | - | 57428:27004-27023 | MS.gene25308:intergenic | 65.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | + | 57428:27015-27034 | MS.gene25308:intron | 65.0% |
| ATTGGGTGGGGGGGATGGGG+TGG | + | 57428:25010-25029 | MS.gene25308:intron | 70.0% | |
| TGGGGTGGGGGGGTTGGGTT+GGG | + | 57428:25030-25049 | MS.gene25308:intron | 70.0% | |
| TTGGGTGGGGGGGATGGGGT+GGG | + | 57428:25011-25030 | MS.gene25308:intron | 70.0% | |
| ATGGGGTGGGGTGGGGGGGT+TGG | + | 57428:25024-25043 | MS.gene25308:intron | 75.0% | |
| GTGGGGTGGGGGGGTTGGGT+TGG | + | 57428:25029-25048 | MS.gene25308:intron | 75.0% | |
| TGGGGGGGATGGGGTGGGGT+GGG | + | 57428:25016-25035 | MS.gene25308:intron | 75.0% | |
| TGGGGTGGGGTGGGGGGGTT+GGG | + | 57428:25025-25044 | MS.gene25308:intron | 75.0% | |
| TGGGTGGGGGGGATGGGGTG+GGG | + | 57428:25012-25031 | MS.gene25308:intron | 75.0% | |
| ! | GGGGATGGGGTGGGGTGGGG+GGG | + | 57428:25020-25039 | MS.gene25308:intron | 80.0% |
| ! | GGGGGATGGGGTGGGGTGGG+GGG | + | 57428:25019-25038 | MS.gene25308:intron | 80.0% |
| ! | GGGGGGATGGGGTGGGGTGG+GGG | + | 57428:25018-25037 | MS.gene25308:intron | 80.0% |
| ! | GGGGGGGATGGGGTGGGGTG+GGG | + | 57428:25017-25036 | MS.gene25308:intron | 80.0% |
| ! | GTGGGGGGGATGGGGTGGGG+TGG | + | 57428:25015-25034 | MS.gene25308:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57428 | gene | 24428 | 27734 | 24428 | ID=MS.gene25308 |
| 57428 | mRNA | 24428 | 27734 | 24428 | ID=MS.gene25308.t1;Parent=MS.gene25308 |
| 57428 | exon | 24428 | 24519 | 24428 | ID=MS.gene25308.t1.exon1;Parent=MS.gene25308.t1 |
| 57428 | CDS | 24428 | 24519 | 24428 | ID=cds.MS.gene25308.t1;Parent=MS.gene25308.t1 |
| 57428 | exon | 24639 | 24683 | 24639 | ID=MS.gene25308.t1.exon2;Parent=MS.gene25308.t1 |
| 57428 | CDS | 24639 | 24683 | 24639 | ID=cds.MS.gene25308.t1;Parent=MS.gene25308.t1 |
| 57428 | exon | 24795 | 24874 | 24795 | ID=MS.gene25308.t1.exon3;Parent=MS.gene25308.t1 |
| 57428 | CDS | 24795 | 24874 | 24795 | ID=cds.MS.gene25308.t1;Parent=MS.gene25308.t1 |
| 57428 | exon | 25968 | 26042 | 25968 | ID=MS.gene25308.t1.exon4;Parent=MS.gene25308.t1 |
| 57428 | CDS | 25968 | 26042 | 25968 | ID=cds.MS.gene25308.t1;Parent=MS.gene25308.t1 |
| 57428 | exon | 26172 | 26275 | 26172 | ID=MS.gene25308.t1.exon5;Parent=MS.gene25308.t1 |
| 57428 | CDS | 26172 | 26275 | 26172 | ID=cds.MS.gene25308.t1;Parent=MS.gene25308.t1 |
| 57428 | exon | 26351 | 26507 | 26351 | ID=MS.gene25308.t1.exon6;Parent=MS.gene25308.t1 |
| 57428 | CDS | 26351 | 26507 | 26351 | ID=cds.MS.gene25308.t1;Parent=MS.gene25308.t1 |
| 57428 | exon | 26610 | 26697 | 26610 | ID=MS.gene25308.t1.exon7;Parent=MS.gene25308.t1 |
| 57428 | CDS | 26610 | 26697 | 26610 | ID=cds.MS.gene25308.t1;Parent=MS.gene25308.t1 |
| 57428 | exon | 27429 | 27501 | 27429 | ID=MS.gene25308.t1.exon8;Parent=MS.gene25308.t1 |
| 57428 | CDS | 27429 | 27501 | 27429 | ID=cds.MS.gene25308.t1;Parent=MS.gene25308.t1 |
| 57428 | exon | 27583 | 27734 | 27583 | ID=MS.gene25308.t1.exon9;Parent=MS.gene25308.t1 |
| 57428 | CDS | 27583 | 27734 | 27583 | ID=cds.MS.gene25308.t1;Parent=MS.gene25308.t1 |
| Gene Sequence |
| Protein sequence |
