Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25309.t1 | RHN41243.1 | 98.3 | 286 | 5 | 0 | 1 | 286 | 1 | 286 | 1.80E-160 | 575.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25309.t1 | Q56XY2 | 84.0 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.4e-140 | 500.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25309.t1 | G7LEM4 | 98.3 | 286 | 5 | 0 | 1 | 286 | 1 | 286 | 1.3e-160 | 575.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006260 | MS.gene25309 | PPI |
| MS.gene70743 | MS.gene25309 | PPI |
| MS.gene061152 | MS.gene25309 | PPI |
| MS.gene49124 | MS.gene25309 | PPI |
| MS.gene25822 | MS.gene25309 | PPI |
| MS.gene34135 | MS.gene25309 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25309.t1 | MTR_8g062340 | 98.252 | 286 | 5 | 0 | 1 | 286 | 1 | 286 | 0.0 | 578 |
| MS.gene25309.t1 | MTR_8g062340 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 569 |
| MS.gene25309.t1 | MTR_5g089950 | 94.097 | 288 | 17 | 0 | 1 | 288 | 1 | 288 | 0.0 | 559 |
| MS.gene25309.t1 | MTR_3g080040 | 39.300 | 257 | 148 | 4 | 1 | 256 | 1 | 250 | 6.58e-57 | 184 |
| MS.gene25309.t1 | MTR_1g100240 | 30.688 | 189 | 122 | 3 | 6 | 190 | 61 | 244 | 1.91e-19 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25309.t1 | AT5G22370 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 5.93e-177 | 490 |
| MS.gene25309.t1 | AT5G22370 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 5.93e-177 | 490 |
| MS.gene25309.t1 | AT5G22370 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 5.93e-177 | 490 |
| MS.gene25309.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene25309.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene25309.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene25309.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene25309.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene25309.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene25309.t1 | AT4G21800 | 29.570 | 186 | 128 | 2 | 6 | 190 | 45 | 228 | 7.83e-18 | 83.2 |
| MS.gene25309.t1 | AT4G21800 | 29.570 | 186 | 128 | 2 | 6 | 190 | 45 | 228 | 7.83e-18 | 83.2 |
Find 0 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATCTATATTTATTATTA+AGG | - | 57424:6440-6459 | None:intergenic | 10.0% |
| !! | AAATTAACTGTTATATTGAA+TGG | + | 57424:7239-7258 | MS.gene25309:intron | 15.0% |
| !! | AATTAACTGTTATATTGAAT+GGG | + | 57424:7240-7259 | MS.gene25309:intron | 15.0% |
| !! | CAAATAAGAAAATAAAACTT+AGG | - | 57424:8494-8513 | None:intergenic | 15.0% |
| !! | CATAAAGAAATTAACTTTAA+GGG | + | 57424:7914-7933 | MS.gene25309:CDS | 15.0% |
| !! | TATAGTTAAGTTAATTGATA+TGG | + | 57424:6410-6429 | MS.gene25309:intron | 15.0% |
| !! | TATTTGAGAAATTATTAAGA+AGG | + | 57424:6818-6837 | MS.gene25309:intron | 15.0% |
| !! | TCATAAAGAAATTAACTTTA+AGG | + | 57424:7913-7932 | MS.gene25309:CDS | 15.0% |
| !!! | AATATTGTTGTTATTCTTAA+AGG | + | 57424:6368-6387 | MS.gene25309:intron | 15.0% |
| !!! | AGTTTTTTTTTAATGGTAAA+TGG | - | 57424:6799-6818 | None:intergenic | 15.0% |
| !!! | CTCAAATAGTTTTTTTTTAA+TGG | - | 57424:6806-6825 | None:intergenic | 15.0% |
| !! | AAAAAAAACTGTGTATCTTA+AGG | - | 57424:9026-9045 | None:intergenic | 20.0% |
| !! | AATACTTAAAACAACCAAAA+AGG | - | 57424:6549-6568 | None:intergenic | 20.0% |
| !! | AGAGATACTAATGTAAAATA+TGG | + | 57424:8785-8804 | MS.gene25309:intron | 20.0% |
| !! | ATAAAATATTAACCAAATCG+TGG | - | 57424:8834-8853 | None:intergenic | 20.0% |
| !! | ATAACAACAATATTTCAAAG+AGG | - | 57424:6362-6381 | None:intergenic | 20.0% |
| !! | ATACCTAAATTAGTAGAAAT+TGG | - | 57424:6244-6263 | None:intergenic | 20.0% |
| !! | TAATGAAATCAAATATATGC+TGG | + | 57424:8899-8918 | MS.gene25309:intron | 20.0% |
| !! | TACGAACAAAAGAAAAAATT+AGG | - | 57424:9179-9198 | None:intergenic | 20.0% |
| !! | TTATAAGCTGCTAATATAAA+AGG | - | 57424:8882-8901 | None:intergenic | 20.0% |
| !! | TTTCCAATTTCTACTAATTT+AGG | + | 57424:6238-6257 | MS.gene25309:intron | 20.0% |
| !!! | AGGAAACTACATTTTAATAA+AGG | - | 57424:8474-8493 | None:intergenic | 20.0% |
| !!! | ATTTTCATTTATGCAGTTAA+CGG | + | 57424:7995-8014 | MS.gene25309:intron | 20.0% |
| !!! | CAAATTAGTTCTTGAAATAA+TGG | - | 57424:7974-7993 | None:intergenic | 20.0% |
| !!! | TTAAATGCATTTTTTTAAGC+TGG | + | 57424:8196-8215 | MS.gene25309:intron | 20.0% |
| !!! | TTAAGTTGTTAATCAAAACA+GGG | - | 57424:7296-7315 | None:intergenic | 20.0% |
| !!! | TTTTACAACATTAGATATTC+AGG | + | 57424:9140-9159 | MS.gene25309:CDS | 20.0% |
| ! | AAGAAAAAATTAGGCATATC+TGG | - | 57424:9170-9189 | None:intergenic | 25.0% |
| ! | AGTGCATTTAAGGATAATTT+AGG | - | 57424:7744-7763 | None:intergenic | 25.0% |
| ! | ATCTAGAGAAAAATATTGAC+TGG | + | 57424:7649-7668 | MS.gene25309:CDS | 25.0% |
| ! | CAATATTTCAAAGAGGTTAA+TGG | - | 57424:6355-6374 | None:intergenic | 25.0% |
| ! | CAATTTAATATGGCATGAAA+TGG | - | 57424:8738-8757 | None:intergenic | 25.0% |
| ! | CATAGACAAGACAAATAAAA+GGG | - | 57424:8711-8730 | None:intergenic | 25.0% |
| ! | GAAGAACTAGAAAAACTATT+GGG | + | 57424:6653-6672 | MS.gene25309:intron | 25.0% |
| ! | TATCTATAATAATCCCAATC+AGG | - | 57424:9357-9376 | None:intergenic | 25.0% |
| ! | TGTATAAAAATCAAGGTTGA+AGG | - | 57424:8273-8292 | None:intergenic | 25.0% |
| ! | TTAATATTTACTCTTTCGTC+CGG | - | 57424:6758-6777 | None:intergenic | 25.0% |
| ! | TTAGTTTATTTGAGCTTATC+TGG | - | 57424:7536-7555 | None:intergenic | 25.0% |
| ! | TTCACAGCAACAATTTAATA+TGG | - | 57424:8748-8767 | None:intergenic | 25.0% |
| !! | ATAAGTACTTGTGAGATTTT+TGG | - | 57424:7512-7531 | None:intergenic | 25.0% |
| !! | ATTGATTTAATTGAGAGCTA+CGG | + | 57424:8137-8156 | MS.gene25309:CDS | 25.0% |
| !! | GTTAAGTTGTTAATCAAAAC+AGG | - | 57424:7297-7316 | None:intergenic | 25.0% |
| !! | TGGTTAAGTTTGGTTTAAAT+GGG | + | 57424:8960-8979 | MS.gene25309:intron | 25.0% |
| !! | TTTTGACAAGACATTTATGT+GGG | - | 57424:8117-8136 | None:intergenic | 25.0% |
| !! | TTTTTGACAAGACATTTATG+TGG | - | 57424:8118-8137 | None:intergenic | 25.0% |
| !!! | ACTATTTTTATAAGCTGTCA+TGG | + | 57424:7420-7439 | MS.gene25309:intron | 25.0% |
| AAATTGAAACCTCTTCTGAA+AGG | + | 57424:7681-7700 | MS.gene25309:CDS | 30.0% | |
| AACTAGAAAAACTATTGGGT+GGG | + | 57424:6657-6676 | MS.gene25309:intron | 30.0% | |
| AAGACAAATAAAAGGGCAAA+GGG | - | 57424:8704-8723 | None:intergenic | 30.0% | |
| AGAGTACATCAAATCAATAG+AGG | + | 57424:6625-6644 | MS.gene25309:intron | 30.0% | |
| ATGTAATAACCTTTCAGAAG+AGG | - | 57424:7693-7712 | None:intergenic | 30.0% | |
| ATTTCAAAGAGGTTAATGGA+AGG | - | 57424:6351-6370 | None:intergenic | 30.0% | |
| GAAGAAAAAATAGTTCCACT+TGG | - | 57424:7863-7882 | None:intergenic | 30.0% | |
| GCACATCTGTATAAAAATCA+AGG | - | 57424:8280-8299 | None:intergenic | 30.0% | |
| GCATAGACAAGACAAATAAA+AGG | - | 57424:8712-8731 | None:intergenic | 30.0% | |
| GGAAGAACTAGAAAAACTAT+TGG | + | 57424:6652-6671 | MS.gene25309:intron | 30.0% | |
| GTTCAGTAGAAATTCTAAGT+TGG | + | 57424:9205-9224 | MS.gene25309:intron | 30.0% | |
| TAATATTTACTCTTTCGTCC+GGG | - | 57424:6757-6776 | None:intergenic | 30.0% | |
| TGTTTAATGTCATAACCAAG+AGG | + | 57424:6591-6610 | MS.gene25309:intron | 30.0% | |
| TTTATTTGTCTTGTCTATGC+TGG | + | 57424:8712-8731 | MS.gene25309:intron | 30.0% | |
| TTTGACAAGACATTTATGTG+GGG | - | 57424:8116-8135 | None:intergenic | 30.0% | |
| ! | AAGTTGGATTATCCTTTTAC+AGG | + | 57424:9221-9240 | MS.gene25309:intron | 30.0% |
| ! | AGAGAAAAATATTGACTGGT+TGG | + | 57424:7653-7672 | MS.gene25309:CDS | 30.0% |
| ! | GTGGTTAAGTTTGGTTTAAA+TGG | + | 57424:8959-8978 | MS.gene25309:intron | 30.0% |
| ! | TAATTTTCCTCGTTTGCAAA+TGG | + | 57424:8937-8956 | MS.gene25309:intron | 30.0% |
| ! | TGATTACACATTTGAAGTGT+AGG | + | 57424:6972-6991 | MS.gene25309:intron | 30.0% |
| !! | GAGATTTTTGGAAGAACTTA+TGG | - | 57424:7500-7519 | None:intergenic | 30.0% |
| !! | GGCTCTAATAAAAGGTATTA+AGG | - | 57424:7275-7294 | None:intergenic | 30.0% |
| !! | GTAATTACTTTTGCAAGCTA+GGG | + | 57424:8173-8192 | MS.gene25309:intron | 30.0% |
| !! | GTTTTCTACTTTTCAAATGC+AGG | + | 57424:6277-6296 | MS.gene25309:intron | 30.0% |
| !! | TATCTACTCTTTGATTTTCC+TGG | + | 57424:7837-7856 | MS.gene25309:CDS | 30.0% |
| !! | TGTAATTACTTTTGCAAGCT+AGG | + | 57424:8172-8191 | MS.gene25309:intron | 30.0% |
| AACTAATCTAAACAGACCCT+AGG | + | 57424:7550-7569 | MS.gene25309:intron | 35.0% | |
| AAGAGGTTAATGGAAGGATA+CGG | - | 57424:6345-6364 | None:intergenic | 35.0% | |
| AAGCTGATAGACAAAACCAA+TGG | + | 57424:9270-9289 | MS.gene25309:CDS | 35.0% | |
| ACAGTAAGACACAAATACCT+AGG | - | 57424:7570-7589 | None:intergenic | 35.0% | |
| ACTAGAAAAACTATTGGGTG+GGG | + | 57424:6658-6677 | MS.gene25309:intron | 35.0% | |
| AGAGATTAATGAGATGGACA+GGG | + | 57424:6845-6864 | MS.gene25309:intron | 35.0% | |
| AGCTGATAGACAAAACCAAT+GGG | + | 57424:9271-9290 | MS.gene25309:CDS | 35.0% | |
| ATGTTTCAGTGTTAATGGTG+TGG | + | 57424:7120-7139 | MS.gene25309:intron | 35.0% | |
| ATTCTCTCTTTCTCTCTATG+CGG | + | 57424:8852-8871 | MS.gene25309:intron | 35.0% | |
| ATTTGTCTTGTCTATGCTGA+GGG | + | 57424:8509-8528 | MS.gene25309:intron | 35.0% | |
| CAAGACAAATAAAAGGGCAA+AGG | - | 57424:8705-8724 | None:intergenic | 35.0% | |
| CAGTAAGACACAAATACCTA+GGG | - | 57424:7569-7588 | None:intergenic | 35.0% | |
| CATATGTAGCATTGTGGATA+AGG | - | 57424:8087-8106 | None:intergenic | 35.0% | |
| CATCAAATCAATAGAGGTAG+AGG | + | 57424:6631-6650 | MS.gene25309:intron | 35.0% | |
| CGTCTATGTTTCAGTGTTAA+TGG | + | 57424:7115-7134 | MS.gene25309:intron | 35.0% | |
| CTAGAGTAGTTTAGCTGAAT+AGG | - | 57424:7784-7803 | None:intergenic | 35.0% | |
| CTTATCCACAATGCTACATA+TGG | + | 57424:8085-8104 | MS.gene25309:CDS | 35.0% | |
| GAACTAGAAAAACTATTGGG+TGG | + | 57424:6656-6675 | MS.gene25309:intron | 35.0% | |
| GAGTTTAGCAAGATTGCTAT+GGG | + | 57424:9327-9346 | MS.gene25309:CDS | 35.0% | |
| GAGTTTCATGATGACATTCT+TGG | - | 57424:7895-7914 | None:intergenic | 35.0% | |
| GGATCTAGAGATTAATGAGA+TGG | + | 57424:6839-6858 | MS.gene25309:intron | 35.0% | |
| GGCAAAACAACTTACTGTAA+TGG | + | 57424:6127-6146 | MS.gene25309:CDS | 35.0% | |
| GTCATGATAGAACATTCTCT+TGG | + | 57424:6501-6520 | MS.gene25309:CDS | 35.0% | |
| GTGTAATCACACAGAACTAT+TGG | - | 57424:6961-6980 | None:intergenic | 35.0% | |
| TAGAGATTAATGAGATGGAC+AGG | + | 57424:6844-6863 | MS.gene25309:intron | 35.0% | |
| TAGTTCCATATGTAGCATTG+TGG | - | 57424:8093-8112 | None:intergenic | 35.0% | |
| TATCTGTGTTAGTGTTTCAG+AGG | + | 57424:7153-7172 | MS.gene25309:intron | 35.0% | |
| TATTTGCAGAAAGCTCACAA+AGG | + | 57424:9080-9099 | MS.gene25309:intron | 35.0% | |
| TATTTGTCTTGTCTATGCTG+AGG | + | 57424:8508-8527 | MS.gene25309:intron | 35.0% | |
| TGAAATAATGGTTCGACACT+AGG | - | 57424:7962-7981 | None:intergenic | 35.0% | |
| TGAGTTTAGCAAGATTGCTA+TGG | + | 57424:9326-9345 | MS.gene25309:CDS | 35.0% | |
| TTAATGTCATAACCAAGAGG+AGG | + | 57424:6594-6613 | MS.gene25309:intron | 35.0% | |
| TTGCAAATGGTGGTTAAGTT+TGG | + | 57424:8950-8969 | MS.gene25309:intron | 35.0% | |
| ! | CAAAACAGGGCTCTAATAAA+AGG | - | 57424:7283-7302 | None:intergenic | 35.0% |
| ! | GAGGTAAGTCTATTCCTTTT+TGG | + | 57424:6532-6551 | MS.gene25309:intron | 35.0% |
| ! | GTAGTTTGTGAGTGCATTTA+AGG | - | 57424:7754-7773 | None:intergenic | 35.0% |
| ! | TCTCAGTTTCTCAGTCTTAT+TGG | + | 57424:6154-6173 | MS.gene25309:CDS | 35.0% |
| ! | TGAATGTGCTGTTAACATTG+AGG | + | 57424:6458-6477 | MS.gene25309:CDS | 35.0% |
| !! | AGTTTCTCAGTCTTATTGGA+AGG | + | 57424:6158-6177 | MS.gene25309:CDS | 35.0% |
| !! | TCTACTTTTCAAATGCAGGA+AGG | + | 57424:6281-6300 | MS.gene25309:intron | 35.0% |
| AAAAATAGTTCCACTTGGCC+AGG | - | 57424:7858-7877 | None:intergenic | 40.0% | |
| AACAGTCTCTTGTGTAAGAC+AGG | + | 57424:8598-8617 | MS.gene25309:intron | 40.0% | |
| AAGCTGTCATGGAGAACTTA+TGG | + | 57424:7431-7450 | MS.gene25309:intron | 40.0% | |
| ACAGTCTCTTGTGTAAGACA+GGG | + | 57424:8599-8618 | MS.gene25309:intron | 40.0% | |
| ACCAATGGGTACATATTTGC+CGG | + | 57424:9285-9304 | MS.gene25309:CDS | 40.0% | |
| AGCTGTCATGGAGAACTTAT+GGG | + | 57424:7432-7451 | MS.gene25309:intron | 40.0% | |
| CACTCTCTTTGTCCTGTAAA+AGG | - | 57424:9236-9255 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | 57424:8630-8649 | MS.gene25309:intron | 40.0% | |
| CTAGAAAAACTATTGGGTGG+GGG | + | 57424:6659-6678 | MS.gene25309:intron | 40.0% | |
| GAACACGCTTACAATCTGAA+AGG | - | 57424:7023-7042 | None:intergenic | 40.0% | |
| GAACATTCTCTTGGTCCTAA+CGG | + | 57424:6510-6529 | MS.gene25309:CDS | 40.0% | |
| GAGATTAATGAGATGGACAG+GGG | + | 57424:6846-6865 | MS.gene25309:intron | 40.0% | |
| GATGACAATACTCCACGATT+TGG | + | 57424:8819-8838 | MS.gene25309:intron | 40.0% | |
| GTGTTTGGGCAAGTAGTAAT+TGG | + | 57424:6091-6110 | MS.gene25309:CDS | 40.0% | |
| GTTCATAGGGGATAAAGAGT+TGG | + | 57424:6715-6734 | MS.gene25309:intron | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | + | 57424:8555-8574 | MS.gene25309:intron | 40.0% | |
| TACGGTAACGAATCATTAGC+AGG | - | 57424:6327-6346 | None:intergenic | 40.0% | |
| TAGAAAAACTATTGGGTGGG+GGG | + | 57424:6660-6679 | MS.gene25309:intron | 40.0% | |
| TGAAGGCTGCAACAATGAAA+TGG | - | 57424:8256-8275 | None:intergenic | 40.0% | |
| TGTTAGTGTTTCAGAGGTGA+TGG | + | 57424:7159-7178 | MS.gene25309:intron | 40.0% | |
| TTAACCACCATTTGCAAACG+AGG | - | 57424:8947-8966 | None:intergenic | 40.0% | |
| TTACACAAGAGACTGTTTCC+AGG | - | 57424:8595-8614 | None:intergenic | 40.0% | |
| TTCACTTGTGTTGTACAAGC+AGG | + | 57424:7606-7625 | MS.gene25309:intron | 40.0% | |
| TTTGTCTTGTCTATGCTGAG+GGG | + | 57424:8510-8529 | MS.gene25309:intron | 40.0% | |
| ! | ACACATTTGAAGTGTAGGCA+TGG | + | 57424:6977-6996 | MS.gene25309:intron | 40.0% |
| ! | AGCAGGTCTTGTATACTGTA+TGG | + | 57424:7623-7642 | MS.gene25309:intron | 40.0% |
| ! | CACATTTGAAGTGTAGGCAT+GGG | + | 57424:6978-6997 | MS.gene25309:intron | 40.0% |
| ! | GAAGGTTGCTGTTGTCAATT+TGG | + | 57424:6299-6318 | MS.gene25309:CDS | 40.0% |
| ! | TACAGGACAAAGAGAGTGTA+GGG | + | 57424:9238-9257 | MS.gene25309:intron | 40.0% |
| ! | TGGGTGATGGTATATAGCAT+CGG | + | 57424:6997-7016 | MS.gene25309:intron | 40.0% |
| ! | TTACAGGACAAAGAGAGTGT+AGG | + | 57424:9237-9256 | MS.gene25309:intron | 40.0% |
| ! | TTTTCCTCGTTTGCAAATGG+TGG | + | 57424:8940-8959 | MS.gene25309:intron | 40.0% |
| AACTGCACTTGCATCTATGC+CGG | - | 57424:9307-9326 | None:intergenic | 45.0% | |
| AGAAAAACTATTGGGTGGGG+GGG | + | 57424:6661-6680 | MS.gene25309:intron | 45.0% | |
| ATCCTCACTCTGCTAAGTAC+AGG | + | 57424:8336-8355 | MS.gene25309:CDS | 45.0% | |
| ATTGAGAGCTACGGAAAGCT+AGG | + | 57424:8146-8165 | MS.gene25309:CDS | 45.0% | |
| CAAGTAGTAATTGGTCCTCC+TGG | + | 57424:6100-6119 | MS.gene25309:CDS | 45.0% | |
| CATAGGGGATAAAGAGTTGG+AGG | + | 57424:6718-6737 | MS.gene25309:intron | 45.0% | |
| CTCTTGTGTAAGACAGGGTA+AGG | + | 57424:8604-8623 | MS.gene25309:intron | 45.0% | |
| CTTATCCCACTAAGTGGGAT+CGG | - | 57424:6916-6935 | None:intergenic | 45.0% | |
| GATCGGCTACATGGATCAAA+CGG | - | 57424:6899-6918 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | 57424:8629-8648 | MS.gene25309:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | 57424:8626-8645 | MS.gene25309:intron | 45.0% | |
| GGAATAGACTTACCTCCGTT+AGG | - | 57424:6528-6547 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | + | 57424:8561-8580 | MS.gene25309:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | + | 57424:8562-8581 | MS.gene25309:intron | 45.0% | |
| TGTCATAACCAAGAGGAGGT+CGG | + | 57424:6598-6617 | MS.gene25309:intron | 45.0% | |
| TTTCGTCCGGGTTTAAACTC+AGG | - | 57424:6745-6764 | None:intergenic | 45.0% | |
| ! | AATGCACTGATGTACTTCCC+AGG | - | 57424:8056-8075 | None:intergenic | 45.0% |
| ! | ATGCACTGATGTACTTCCCA+GGG | - | 57424:8055-8074 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | 57424:6921-6940 | None:intergenic | 45.0% |
| ! | TACAGGTGTGCTTTGTTGTG+TGG | + | 57424:8353-8372 | MS.gene25309:intron | 45.0% |
| !! | CTTTGATTTTCCTGGCCAAG+TGG | + | 57424:7845-7864 | MS.gene25309:CDS | 45.0% |
| !! | GTTGGGTTGGGTAGTTCATA+GGG | + | 57424:6702-6721 | MS.gene25309:intron | 45.0% |
| !! | TAAGTTGTTTTGCCAGAGCC+AGG | - | 57424:6121-6140 | None:intergenic | 45.0% |
| !! | TTGGGTTGGGTAGTTCATAG+GGG | + | 57424:6703-6722 | MS.gene25309:intron | 45.0% |
| ACTAAGTGGGATCGGCTACA+TGG | - | 57424:6908-6927 | None:intergenic | 50.0% | |
| ACTTCCCAGGGTCACTACAA+AGG | - | 57424:8043-8062 | None:intergenic | 50.0% | |
| ATGTAGCCGATCCCACTTAG+TGG | + | 57424:6907-6926 | MS.gene25309:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | 57424:8539-8558 | None:intergenic | 50.0% | |
| CACCTGTACTTAGCAGAGTG+AGG | - | 57424:8341-8360 | None:intergenic | 50.0% | |
| CATTCTCTTGGTCCTAACGG+AGG | + | 57424:6513-6532 | MS.gene25309:CDS | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | 57424:6919-6938 | MS.gene25309:intron | 50.0% | |
| CGATCCCACTTAGTGGGATA+AGG | + | 57424:6914-6933 | MS.gene25309:intron | 50.0% | |
| CTCACCTTTGTAGTGACCCT+GGG | + | 57424:8036-8055 | MS.gene25309:CDS | 50.0% | |
| GCAGTTAACGGCAGTGCATT+TGG | + | 57424:8007-8026 | MS.gene25309:intron | 50.0% | |
| GCCGGCAAATATGTACCCAT+TGG | - | 57424:9289-9308 | None:intergenic | 50.0% | |
| GGAGGTCCTGAGTTTAAACC+CGG | + | 57424:6736-6755 | MS.gene25309:intron | 50.0% | |
| TAAAAGGGCAAAGGGCAACC+CGG | - | 57424:8696-8715 | None:intergenic | 50.0% | |
| TCTATGCTGAGGGGTAACCT+TGG | + | 57424:8519-8538 | MS.gene25309:intron | 50.0% | |
| TGAAGTGTAGGCATGGGTGA+TGG | + | 57424:6984-7003 | MS.gene25309:intron | 50.0% | |
| TGCTATGGGAGCTCCTGATT+GGG | + | 57424:9341-9360 | MS.gene25309:CDS | 50.0% | |
| TGTAGCCGATCCCACTTAGT+GGG | + | 57424:6908-6927 | MS.gene25309:intron | 50.0% | |
| TTGCTATGGGAGCTCCTGAT+TGG | + | 57424:9340-9359 | MS.gene25309:CDS | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | 57424:6922-6941 | None:intergenic | 50.0% |
| !! | GGTTGGGTTGGGTAGTTCAT+AGG | + | 57424:6701-6720 | MS.gene25309:intron | 50.0% |
| AAACTATTGGGTGGGGGGGA+TGG | + | 57424:6665-6684 | MS.gene25309:intron | 55.0% | |
| AACTATTGGGTGGGGGGGAT+GGG | + | 57424:6666-6685 | MS.gene25309:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | 57424:8574-8593 | MS.gene25309:intron | 55.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | - | 57424:8670-8689 | None:intergenic | 55.0% | |
| CATATGCAGGGTCTGGGAAG+GGG | - | 57424:8657-8676 | None:intergenic | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | - | 57424:8669-8688 | None:intergenic | 55.0% | |
| CTCTCAATCCGACCTCCTCT+TGG | - | 57424:6609-6628 | None:intergenic | 55.0% | |
| CTTCCCAGACCCTGCATATG+CGG | + | 57424:8657-8676 | MS.gene25309:intron | 55.0% | |
| GCATATGCAGGGTCTGGGAA+GGG | - | 57424:8658-8677 | None:intergenic | 55.0% | |
| GCTCACCTTTGTAGTGACCC+TGG | + | 57424:8035-8054 | MS.gene25309:CDS | 55.0% | |
| GTAATTGGTCCTCCTGGCTC+TGG | + | 57424:6106-6125 | MS.gene25309:CDS | 55.0% | |
| TTCCCAGACCCTGCATATGC+GGG | + | 57424:8658-8677 | MS.gene25309:intron | 55.0% | |
| !! | GTTGTTTTGCCAGAGCCAGG+AGG | - | 57424:6118-6137 | None:intergenic | 55.0% |
| ACTATTGGGTGGGGGGGATG+GGG | + | 57424:6667-6686 | MS.gene25309:intron | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | + | 57424:8528-8547 | MS.gene25309:intron | 60.0% | |
| CGCATATGCAGGGTCTGGGA+AGG | - | 57424:8659-8678 | None:intergenic | 60.0% | |
| CTCCCGCATATGCAGGGTCT+GGG | - | 57424:8663-8682 | None:intergenic | 60.0% | |
| TGGGAAGGGGTCCCACCATT+TGG | - | 57424:8644-8663 | None:intergenic | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | + | 57424:8674-8693 | MS.gene25309:intron | 60.0% |
| GCTCCCGCATATGCAGGGTC+TGG | - | 57424:8664-8683 | None:intergenic | 65.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | + | 57424:8675-8694 | MS.gene25309:intron | 65.0% |
| ATTGGGTGGGGGGGATGGGG+TGG | + | 57424:6670-6689 | MS.gene25309:intron | 70.0% | |
| TGGGGTGGGGGGGTTGGGTT+GGG | + | 57424:6690-6709 | MS.gene25309:intron | 70.0% | |
| TTGGGTGGGGGGGATGGGGT+GGG | + | 57424:6671-6690 | MS.gene25309:intron | 70.0% | |
| ATGGGGTGGGGTGGGGGGGT+TGG | + | 57424:6684-6703 | MS.gene25309:intron | 75.0% | |
| GTGGGGTGGGGGGGTTGGGT+TGG | + | 57424:6689-6708 | MS.gene25309:intron | 75.0% | |
| TGGGGGGGATGGGGTGGGGT+GGG | + | 57424:6676-6695 | MS.gene25309:intron | 75.0% | |
| TGGGGTGGGGTGGGGGGGTT+GGG | + | 57424:6685-6704 | MS.gene25309:intron | 75.0% | |
| TGGGTGGGGGGGATGGGGTG+GGG | + | 57424:6672-6691 | MS.gene25309:intron | 75.0% | |
| ! | GGGGATGGGGTGGGGTGGGG+GGG | + | 57424:6680-6699 | MS.gene25309:intron | 80.0% |
| ! | GGGGGATGGGGTGGGGTGGG+GGG | + | 57424:6679-6698 | MS.gene25309:intron | 80.0% |
| ! | GGGGGGATGGGGTGGGGTGG+GGG | + | 57424:6678-6697 | MS.gene25309:intron | 80.0% |
| ! | GGGGGGGATGGGGTGGGGTG+GGG | + | 57424:6677-6696 | MS.gene25309:intron | 80.0% |
| ! | GTGGGGGGGATGGGGTGGGG+TGG | + | 57424:6675-6694 | MS.gene25309:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57424 | gene | 6088 | 9394 | 6088 | ID=MS.gene25309 |
| 57424 | mRNA | 6088 | 9394 | 6088 | ID=MS.gene25309.t1;Parent=MS.gene25309 |
| 57424 | exon | 6088 | 6179 | 6088 | ID=MS.gene25309.t1.exon1;Parent=MS.gene25309.t1 |
| 57424 | CDS | 6088 | 6179 | 6088 | ID=cds.MS.gene25309.t1;Parent=MS.gene25309.t1 |
| 57424 | exon | 6299 | 6343 | 6299 | ID=MS.gene25309.t1.exon2;Parent=MS.gene25309.t1 |
| 57424 | CDS | 6299 | 6343 | 6299 | ID=cds.MS.gene25309.t1;Parent=MS.gene25309.t1 |
| 57424 | exon | 6455 | 6534 | 6455 | ID=MS.gene25309.t1.exon3;Parent=MS.gene25309.t1 |
| 57424 | CDS | 6455 | 6534 | 6455 | ID=cds.MS.gene25309.t1;Parent=MS.gene25309.t1 |
| 57424 | exon | 7628 | 7702 | 7628 | ID=MS.gene25309.t1.exon4;Parent=MS.gene25309.t1 |
| 57424 | CDS | 7628 | 7702 | 7628 | ID=cds.MS.gene25309.t1;Parent=MS.gene25309.t1 |
| 57424 | exon | 7832 | 7935 | 7832 | ID=MS.gene25309.t1.exon5;Parent=MS.gene25309.t1 |
| 57424 | CDS | 7832 | 7935 | 7832 | ID=cds.MS.gene25309.t1;Parent=MS.gene25309.t1 |
| 57424 | exon | 8011 | 8167 | 8011 | ID=MS.gene25309.t1.exon6;Parent=MS.gene25309.t1 |
| 57424 | CDS | 8011 | 8167 | 8011 | ID=cds.MS.gene25309.t1;Parent=MS.gene25309.t1 |
| 57424 | exon | 8270 | 8357 | 8270 | ID=MS.gene25309.t1.exon7;Parent=MS.gene25309.t1 |
| 57424 | CDS | 8270 | 8357 | 8270 | ID=cds.MS.gene25309.t1;Parent=MS.gene25309.t1 |
| 57424 | exon | 9089 | 9161 | 9089 | ID=MS.gene25309.t1.exon8;Parent=MS.gene25309.t1 |
| 57424 | CDS | 9089 | 9161 | 9089 | ID=cds.MS.gene25309.t1;Parent=MS.gene25309.t1 |
| 57424 | exon | 9243 | 9394 | 9243 | ID=MS.gene25309.t1.exon9;Parent=MS.gene25309.t1 |
| 57424 | CDS | 9243 | 9394 | 9243 | ID=cds.MS.gene25309.t1;Parent=MS.gene25309.t1 |
| Gene Sequence |
| Protein sequence |
