Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25828.t1 | XP_024635252.1 | 96.2 | 581 | 22 | 0 | 1 | 581 | 1 | 581 | 8.70E-192 | 680.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25828.t1 | A0A396IXW8 | 88.6 | 581 | 25 | 1 | 1 | 581 | 1 | 540 | 3.5e-187 | 664.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049411 | MS.gene25828 | 0.82022 | 7.70E-53 | -1.69E-46 |
MS.gene050689 | MS.gene25828 | 0.811336 | 7.37E-51 | -1.69E-46 |
MS.gene051234 | MS.gene25828 | 0.802028 | 6.81E-49 | -1.69E-46 |
MS.gene051343 | MS.gene25828 | 0.801477 | 8.84E-49 | -1.69E-46 |
MS.gene052072 | MS.gene25828 | 0.816764 | 4.67E-52 | -1.69E-46 |
MS.gene054004 | MS.gene25828 | 0.829132 | 6.11E-55 | -1.69E-46 |
MS.gene054005 | MS.gene25828 | 0.804945 | 1.69E-49 | -1.69E-46 |
MS.gene059802 | MS.gene25828 | 0.825515 | 4.50E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25828.t1 | AT3G43590 | 43.405 | 417 | 186 | 10 | 45 | 424 | 44 | 447 | 1.19e-99 | 315 |
MS.gene25828.t1 | AT5G36240 | 46.535 | 101 | 50 | 1 | 216 | 316 | 27 | 123 | 4.71e-24 | 102 |
MS.gene25828.t1 | AT3G43490 | 37.267 | 161 | 87 | 5 | 38 | 184 | 23 | 183 | 3.79e-21 | 94.0 |
MS.gene25828.t1 | AT4G36020 | 26.032 | 315 | 159 | 10 | 67 | 352 | 27 | 296 | 6.32e-18 | 85.1 |
MS.gene25828.t1 | AT4G36020 | 26.032 | 315 | 159 | 10 | 67 | 352 | 27 | 296 | 6.32e-18 | 85.1 |
MS.gene25828.t1 | AT2G17870 | 26.644 | 289 | 153 | 9 | 67 | 312 | 27 | 299 | 2.72e-15 | 77.4 |
MS.gene25828.t1 | AT1G75560 | 31.373 | 204 | 97 | 6 | 134 | 313 | 63 | 247 | 4.28e-14 | 73.2 |
MS.gene25828.t1 | AT1G75560 | 31.373 | 204 | 97 | 6 | 134 | 313 | 63 | 247 | 4.28e-14 | 73.2 |
MS.gene25828.t1 | AT4G36020 | 26.740 | 273 | 137 | 9 | 67 | 312 | 27 | 263 | 2.94e-13 | 70.9 |
MS.gene25828.t1 | AT4G36020 | 29.000 | 200 | 87 | 6 | 169 | 352 | 102 | 262 | 4.11e-13 | 70.5 |
Find 179 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCTCTGCTCTTCGATTTCT+TGG | 0.162405 | 3.2:+70161826 | None:intergenic |
CCTCTACTCTTAGATTTCTT+TGG | 0.166255 | 3.2:+70161896 | None:intergenic |
CTCTACTCTTAGATTTCTTT+GGG | 0.202709 | 3.2:+70161897 | None:intergenic |
CCTCTCCTCTTTGATTTCTT+AGG | 0.205680 | 3.2:+70162034 | None:intergenic |
TGTTATATCTGTAAGCTATT+TGG | 0.213807 | 3.2:-70164101 | MS.gene25828:CDS |
GTTGGAGTTCTAAAATTTCT+AGG | 0.253916 | 3.2:-70161604 | MS.gene25828:CDS |
TGCTTGAAGTGTGGAAATTC+TGG | 0.255080 | 3.2:-70164320 | MS.gene25828:CDS |
CCTCTGCTCTTCGATTTCTT+GGG | 0.268801 | 3.2:+70161827 | None:intergenic |
ACCTCTGCTCTTGAATTTCA+TGG | 0.321755 | 3.2:+70161757 | None:intergenic |
CCACACCTACTTTGTGCTAT+AGG | 0.325071 | 3.2:-70162506 | MS.gene25828:CDS |
TTGGTCTGCACCTCTCGATA+TGG | 0.332692 | 3.2:-70162110 | MS.gene25828:CDS |
GAGAATGCACAAGTTCTATC+AGG | 0.341187 | 3.2:-70162458 | MS.gene25828:CDS |
CTTGAGACTCAGATCTTGAT+TGG | 0.346562 | 3.2:+70165532 | None:intergenic |
CGTGCAGTCATGTGCTTCTC+TGG | 0.357612 | 3.2:+70164365 | None:intergenic |
TGCTGCAAAACAATGTTCTA+AGG | 0.360499 | 3.2:-70164511 | MS.gene25828:intron |
CCTTGGGAATATGAGGCTTC+AGG | 0.367415 | 3.2:+70161563 | None:intergenic |
AGGTAAAACGGCGTCGTTAG+AGG | 0.370608 | 3.2:+70165469 | None:intergenic |
ACTCTAGTGGTGAAGGGTAT+AGG | 0.374960 | 3.2:-70161442 | MS.gene25828:CDS |
GTAAAGCTTCTTTCTTCTGT+AGG | 0.375344 | 3.2:+70161923 | None:intergenic |
TCTCTTCTTCCAAGTCCAAT+AGG | 0.385087 | 3.2:-70161706 | MS.gene25828:CDS |
AAGAGTAGAGGTGGCTGGAC+GGG | 0.393769 | 3.2:-70161884 | MS.gene25828:CDS |
CCAACACATACACTTCGATT+TGG | 0.401125 | 3.2:+70165395 | None:intergenic |
CATGCTCCCCAACTACTATC+TGG | 0.404551 | 3.2:+70164624 | None:intergenic |
GAAGCATGAATCTGTGGAAC+TGG | 0.408067 | 3.2:-70164826 | MS.gene25828:CDS |
TTGACCCTCCAGATAGTAGT+TGG | 0.416306 | 3.2:-70164632 | MS.gene25828:CDS |
TGATAGAATATGTGCATTCT+CGG | 0.420405 | 3.2:+70162337 | None:intergenic |
AGGACTCCAACTGGTCCTAT+TGG | 0.422284 | 3.2:+70161691 | None:intergenic |
TGATTCGTGGTCTCTTGCCT+TGG | 0.422760 | 3.2:+70165625 | None:intergenic |
CCACACCTACTTTGTGCTAT+AGG | 0.427699 | 3.2:-70162383 | MS.gene25828:CDS |
AAGGGTATAGGAGAGGTAAT+TGG | 0.428630 | 3.2:-70161430 | MS.gene25828:CDS |
AATATTTATGCGAGTGGTAG+TGG | 0.429800 | 3.2:-70161641 | MS.gene25828:CDS |
CTCTGCTCTTCGATTTCTTG+GGG | 0.432190 | 3.2:+70161828 | None:intergenic |
TCTGGAGGGTCAAAATATCT+TGG | 0.434365 | 3.2:+70164642 | None:intergenic |
AGTAGTTCGGCATCAAGGTT+TGG | 0.435020 | 3.2:-70161467 | MS.gene25828:CDS |
TTGGAGTTCTAAAATTTCTA+GGG | 0.445546 | 3.2:-70161603 | MS.gene25828:CDS |
TAAAGCTTCTTTCTTCTGTA+GGG | 0.446719 | 3.2:+70161924 | None:intergenic |
GGAAAGCATCGGCTGACCCT+TGG | 0.447016 | 3.2:+70161546 | None:intergenic |
TGACCCTCCAGATAGTAGTT+GGG | 0.451078 | 3.2:-70164631 | MS.gene25828:CDS |
TGTGGTCAGATGGGTCATAC+TGG | 0.453010 | 3.2:-70164020 | MS.gene25828:CDS |
AGAGTAGAGGTGGCTGGACG+GGG | 0.454054 | 3.2:-70161883 | MS.gene25828:CDS |
AGATATTCGTCATCAAGGTT+TGG | 0.456742 | 3.2:-70161518 | MS.gene25828:CDS |
GTTTCGATTCTCGTGTTCGA+AGG | 0.457467 | 3.2:+70165495 | None:intergenic |
GAAAGCATCGGCTGACCCTT+GGG | 0.458498 | 3.2:+70161547 | None:intergenic |
GTATAGCTTCTTTCTTCTGT+AGG | 0.461609 | 3.2:+70161992 | None:intergenic |
TCTCCTATATCCATCATCAT+TGG | 0.461769 | 3.2:+70161490 | None:intergenic |
ATCGTAGATATTCGTCATCA+AGG | 0.461853 | 3.2:-70161523 | MS.gene25828:CDS |
ACTCCAATGATGATGGATAT+AGG | 0.461906 | 3.2:-70161493 | MS.gene25828:CDS |
TTGGAAGAAGAGAATTCTCC+AGG | 0.464073 | 3.2:+70161716 | None:intergenic |
GGCTGACCCTTGGGAATATG+AGG | 0.468220 | 3.2:+70161556 | None:intergenic |
TTGTTACAAATGTGGTCAGA+TGG | 0.471165 | 3.2:-70164030 | MS.gene25828:CDS |
AGTTGCTACGTCTGCAAGAA+AGG | 0.472885 | 3.2:-70164410 | MS.gene25828:CDS |
TTAAAGTCTCTATCTTCTGC+AGG | 0.473283 | 3.2:+70161785 | None:intergenic |
AATTGATGCAGGCATGTTCA+AGG | 0.479193 | 3.2:-70162554 | MS.gene25828:intron |
GTGCTATAGGTGTGGTGAAG+GGG | 0.485852 | 3.2:-70162370 | MS.gene25828:CDS |
TTTCGATTCTCGTGTTCGAA+GGG | 0.487535 | 3.2:+70165496 | None:intergenic |
TGTCCCCGCAGGACTCCAAC+TGG | 0.488598 | 3.2:+70161682 | None:intergenic |
TGGTCTGCACCTCTCGATAT+GGG | 0.489901 | 3.2:-70162109 | MS.gene25828:CDS |
TGCTATAATTGTGGCGAGGA+AGG | 0.493123 | 3.2:-70164603 | MS.gene25828:CDS |
TGCTATGTATGTGGTGAGTT+GGG | 0.493262 | 3.2:-70164537 | MS.gene25828:CDS |
TCTTGCAGACGTAGCAACTC+TGG | 0.493736 | 3.2:+70164414 | None:intergenic |
AATCGAAGAGCAGAGGTGGC+TGG | 0.497514 | 3.2:-70161820 | MS.gene25828:CDS |
TTGTGCTATAGGTGTGGTGA+AGG | 0.499258 | 3.2:-70162372 | MS.gene25828:CDS |
ATATTTGTGTTTCTAGCAGA+TGG | 0.499302 | 3.2:+70161659 | None:intergenic |
TTGTAACAAGAAATTTCTCC+CGG | 0.503043 | 3.2:+70164044 | None:intergenic |
AGGACCAGTTGGAGTCCTGC+GGG | 0.507329 | 3.2:-70161686 | MS.gene25828:CDS |
CCTCTGCTCTTGAATTTCAT+GGG | 0.511578 | 3.2:+70161758 | None:intergenic |
AAAACAACCTTGAGATCATC+CGG | 0.511648 | 3.2:+70164263 | None:intergenic |
TGGATATAGGAGAAGTAGTT+CGG | 0.513451 | 3.2:-70161480 | MS.gene25828:CDS |
AATTCAAGAGCAGAGGTGGC+TGG | 0.513526 | 3.2:-70161751 | MS.gene25828:CDS |
CCAACTGGTCCTATTGGACT+TGG | 0.517424 | 3.2:+70161697 | None:intergenic |
AGGCGGCATGGGAGGGAGGA+AGG | 0.519317 | 3.2:-70165660 | None:intergenic |
GGCTGGATGGCTGATCACCC+TGG | 0.522893 | 3.2:-70161734 | MS.gene25828:CDS |
AATCAAAGAGGAGAGGTGGC+TGG | 0.529181 | 3.2:-70162027 | MS.gene25828:CDS |
GATAGAATATGTGCATTCTC+GGG | 0.530153 | 3.2:+70162338 | None:intergenic |
ATGCAGGAATGATTATTCAC+CGG | 0.532954 | 3.2:-70164282 | MS.gene25828:CDS |
GACCCTCCAGATAGTAGTTG+GGG | 0.533076 | 3.2:-70164630 | MS.gene25828:CDS |
CAGCATTGACACAACATAAG+TGG | 0.533186 | 3.2:+70164078 | None:intergenic |
GAAATTTCTTGTTACAAATG+TGG | 0.535838 | 3.2:-70164038 | MS.gene25828:CDS |
TTTGGCAACTCCAATGATGA+TGG | 0.536537 | 3.2:-70161500 | MS.gene25828:CDS |
ATGCTATGTATGTGGTGAGT+TGG | 0.536721 | 3.2:-70164538 | MS.gene25828:CDS |
GGTATAGGAGAGGTAATTGG+TGG | 0.536780 | 3.2:-70161427 | MS.gene25828:CDS |
ATGAAATTCAAGAGCAGAGG+TGG | 0.536820 | 3.2:-70161755 | MS.gene25828:CDS |
GCTTGAAGTGTGGAAATTCT+GGG | 0.538694 | 3.2:-70164319 | MS.gene25828:CDS |
GAATTCTAGGCGGCATGGGA+GGG | 0.540611 | 3.2:-70165667 | None:intergenic |
TTTGGCAACTCTAGTGGTGA+AGG | 0.541448 | 3.2:-70161449 | MS.gene25828:CDS |
TTCTAGGCGGCATGGGAGGG+AGG | 0.541783 | 3.2:-70165664 | None:intergenic |
AAGCCTCTTTCGTCTGTATG+AGG | 0.542030 | 3.2:+70162064 | None:intergenic |
AGATTTCTGAGGAGGTAAAA+CGG | 0.542148 | 3.2:+70165457 | None:intergenic |
CGAGATTGTCGATTGATTCG+TGG | 0.542996 | 3.2:+70165612 | None:intergenic |
GGTAGTGGAAGTCGAACTCC+AGG | 0.543268 | 3.2:-70161626 | MS.gene25828:CDS |
AATCTAAGAGTAGAGGTGGC+TGG | 0.543601 | 3.2:-70161889 | MS.gene25828:CDS |
CTAGCAGATGGTGTCCCCGC+AGG | 0.545192 | 3.2:+70161671 | None:intergenic |
TCAGATGGGTCATACTGGTT+CGG | 0.545818 | 3.2:-70164015 | MS.gene25828:intron |
CGAATTCTAGGCGGCATGGG+AGG | 0.545884 | 3.2:-70165668 | None:intergenic |
AGAATGCACATATTCTATCA+AGG | 0.551056 | 3.2:-70162334 | MS.gene25828:intron |
AAGTTTCAAAGTGAGACTAC+TGG | 0.551532 | 3.2:-70162411 | MS.gene25828:CDS |
TAAGAGTAGAGGTGGCTGGA+CGG | 0.552846 | 3.2:-70161885 | MS.gene25828:CDS |
TGCTATAGGTGTGGTGAAGG+AGG | 0.553090 | 3.2:-70162492 | MS.gene25828:CDS |
TGTTACAAATGTGGTCAGAT+GGG | 0.553753 | 3.2:-70164029 | MS.gene25828:CDS |
CTTTAAAGAAAATGAATACA+CGG | 0.557755 | 3.2:-70162137 | MS.gene25828:CDS |
GAGGAGAGGTGGCTGGATGA+CGG | 0.558594 | 3.2:-70162020 | MS.gene25828:CDS |
TCTACTCTTAGATTTCTTTG+GGG | 0.561458 | 3.2:+70161898 | None:intergenic |
TGCTATAGGTGTGGTGAAGG+GGG | 0.563583 | 3.2:-70162369 | MS.gene25828:CDS |
GGAGAAGTAGTTCGGCATCA+AGG | 0.564646 | 3.2:-70161472 | MS.gene25828:CDS |
TATCAGGGTACAATTGATGC+AGG | 0.564930 | 3.2:-70162442 | MS.gene25828:CDS |
TCAGAAATCTGAGCTTCTGA+TGG | 0.565548 | 3.2:-70165444 | MS.gene25828:CDS |
GAAGCGAGTGTGGATCAGAT+AGG | 0.566927 | 3.2:-70164804 | MS.gene25828:CDS |
CAAGAGCAGAGGTGGCTGGA+TGG | 0.567200 | 3.2:-70161747 | MS.gene25828:CDS |
CAATGCTGCTGATGCAACAC+CGG | 0.572275 | 3.2:-70164063 | MS.gene25828:CDS |
CCCATGAAATTCAAGAGCAG+AGG | 0.572284 | 3.2:-70161758 | MS.gene25828:CDS |
AAAATGAATACACGGGACAT+TGG | 0.575346 | 3.2:-70162129 | MS.gene25828:CDS |
GAAGGAGAAGTCGAAAGCCA+AGG | 0.576316 | 3.2:-70165642 | MS.gene25828:CDS |
CGGCCTCATACAGACGAAAG+AGG | 0.581226 | 3.2:-70162067 | MS.gene25828:CDS |
CCAAGTCCAATAGGACCAGT+TGG | 0.582670 | 3.2:-70161697 | MS.gene25828:CDS |
TTTAATGGCTGCAGAGCAAG+AGG | 0.583974 | 3.2:-70164874 | MS.gene25828:CDS |
AACACAAATATTTATGCGAG+TGG | 0.584317 | 3.2:-70161647 | MS.gene25828:CDS |
TGTGGAACTGGAAGCGAGTG+TGG | 0.585170 | 3.2:-70164814 | MS.gene25828:CDS |
CAGAGAAGCACATGACTGCA+CGG | 0.586586 | 3.2:-70164364 | MS.gene25828:CDS |
AAGTAGAGGTGGCTGGACAA+TGG | 0.589351 | 3.2:-70161951 | MS.gene25828:CDS |
TTATTCACCGGATGATCTCA+AGG | 0.590352 | 3.2:-70164270 | MS.gene25828:intron |
TCAAGGTTTGGCAACTCTAG+TGG | 0.591012 | 3.2:-70161455 | MS.gene25828:CDS |
CCAAAGAAATCTAAGAGTAG+AGG | 0.593833 | 3.2:-70161896 | MS.gene25828:CDS |
TGTGCTATAGGTGTGGTGAA+GGG | 0.593983 | 3.2:-70162371 | MS.gene25828:CDS |
CAGGCATGTTCAAGGTTGCA+AGG | 0.596010 | 3.2:-70162546 | MS.gene25828:CDS |
GAGCAGAGGTGGCTGGACAA+CGG | 0.596343 | 3.2:-70161813 | MS.gene25828:CDS |
AAGAAATCTAAGAGTAGAGG+TGG | 0.596476 | 3.2:-70161893 | MS.gene25828:CDS |
AAGAAATCGAAGAGCAGAGG+TGG | 0.600256 | 3.2:-70161824 | MS.gene25828:CDS |
CTGCCGCTGAATACGAGTGA+AGG | 0.603577 | 3.2:+70165575 | None:intergenic |
TAGGACCAGTTGGAGTCCTG+CGG | 0.605008 | 3.2:-70161687 | MS.gene25828:CDS |
CCACACCTATAGCACAAAGT+AGG | 0.606681 | 3.2:+70162378 | None:intergenic |
CCACACCTATAGCACAAAGT+AGG | 0.606681 | 3.2:+70162501 | None:intergenic |
AGATCTGAGTCTCAAGATCG+TGG | 0.607666 | 3.2:-70165525 | MS.gene25828:CDS |
AACTCACCACATACATAGCA+TGG | 0.608122 | 3.2:+70164540 | None:intergenic |
AGGTTGCAAGGTGAGACTAC+TGG | 0.608283 | 3.2:-70162534 | MS.gene25828:CDS |
GAGTAGAGGTGGCTGGACGG+GGG | 0.608327 | 3.2:-70161882 | MS.gene25828:CDS |
CTCCCCAACTACTATCTGGA+GGG | 0.609658 | 3.2:+70164628 | None:intergenic |
AGAGAAGCACATGACTGCAC+GGG | 0.614866 | 3.2:-70164363 | MS.gene25828:CDS |
TGGGGAGCATGCTATAATTG+TGG | 0.615270 | 3.2:-70164612 | MS.gene25828:CDS |
TACAGAGAAGCATGAATCTG+TGG | 0.616167 | 3.2:-70164832 | MS.gene25828:CDS |
TCTGCTCTTCGATTTCTTGG+GGG | 0.616452 | 3.2:+70161829 | None:intergenic |
AAGAAATCAAAGAGGAGAGG+TGG | 0.616538 | 3.2:-70162031 | MS.gene25828:CDS |
GTGGAAGTCGAACTCCAGGT+TGG | 0.617850 | 3.2:-70161622 | MS.gene25828:CDS |
CCTATAGCACAAAGTAGGTG+TGG | 0.621452 | 3.2:+70162506 | None:intergenic |
AGAATGCACAAGTTCTATCA+GGG | 0.622439 | 3.2:-70162457 | MS.gene25828:CDS |
GCTGAATACGAGTGAAGGAG+TGG | 0.622721 | 3.2:+70165580 | None:intergenic |
AATGCTGCTGATGCAACACC+GGG | 0.624524 | 3.2:-70164062 | MS.gene25828:CDS |
CCTGAAGCCTCATATTCCCA+AGG | 0.625347 | 3.2:-70161563 | MS.gene25828:CDS |
AGAAGCTCAGATTTCTGAGG+AGG | 0.625578 | 3.2:+70165449 | None:intergenic |
AATGGCTGCAGAGCAAGAGG+TGG | 0.629284 | 3.2:-70164871 | MS.gene25828:CDS |
GCTCCCCAACTACTATCTGG+AGG | 0.629473 | 3.2:+70164627 | None:intergenic |
TTGTGCTATAGGTGTGGTGA+AGG | 0.629866 | 3.2:-70162495 | MS.gene25828:CDS |
TGGAGTTCTAAAATTTCTAG+GGG | 0.630318 | 3.2:-70161602 | MS.gene25828:CDS |
TTTAAAGAAAATGAATACAC+GGG | 0.632266 | 3.2:-70162136 | MS.gene25828:CDS |
CCCAAGAAATCGAAGAGCAG+AGG | 0.632661 | 3.2:-70161827 | MS.gene25828:CDS |
AGTGGTGAAGGGTATAGGAG+AGG | 0.633947 | 3.2:-70161437 | MS.gene25828:CDS |
TTGATGACGAATATCTACGA+TGG | 0.640722 | 3.2:+70161525 | None:intergenic |
ACTCCTTCACTCGTATTCAG+CGG | 0.641368 | 3.2:-70165578 | MS.gene25828:CDS |
TTGGCAACTCTAGTGGTGAA+GGG | 0.644747 | 3.2:-70161448 | MS.gene25828:CDS |
AAGAAACCATGCTATGTATG+TGG | 0.646078 | 3.2:-70164546 | MS.gene25828:CDS |
GCTATAGGTGTGGTGAAGGA+GGG | 0.650856 | 3.2:-70162491 | MS.gene25828:CDS |
ACGGGCTTCTAAAAGTCTGA+CGG | 0.658559 | 3.2:-70164345 | MS.gene25828:CDS |
CCTAAGAAATCAAAGAGGAG+AGG | 0.660128 | 3.2:-70162034 | MS.gene25828:CDS |
CCTATAGCACAAAGTAGGTG+TGG | 0.661415 | 3.2:+70162383 | None:intergenic |
TGGAAGAAGAGAATTCTCCA+GGG | 0.661485 | 3.2:+70161717 | None:intergenic |
CTGAAGCCTCATATTCCCAA+GGG | 0.662550 | 3.2:-70161562 | MS.gene25828:CDS |
TGCTACGTCTGCAAGAAAGG+TGG | 0.663544 | 3.2:-70164407 | MS.gene25828:CDS |
ATCAGAAGCTCAGATTTCTG+AGG | 0.664294 | 3.2:+70165446 | None:intergenic |
ATATCTACGATGGAAAGCAT+CGG | 0.665753 | 3.2:+70161535 | None:intergenic |
TAAACTGTACAGCAGCGAAG+CGG | 0.671137 | 3.2:-70164569 | MS.gene25828:CDS |
CAACACCTAAGAAATCAAAG+AGG | 0.673886 | 3.2:-70162039 | MS.gene25828:CDS |
GGATCAGATAGGTGACAACA+TGG | 0.674837 | 3.2:-70164793 | MS.gene25828:CDS |
TCAAAGTGAGACTACTGGTG+CGG | 0.678171 | 3.2:-70162406 | MS.gene25828:CDS |
CCTACTTTGTGCTATAGGTG+TGG | 0.685206 | 3.2:-70162378 | MS.gene25828:CDS |
CCTACTTTGTGCTATAGGTG+TGG | 0.685206 | 3.2:-70162501 | MS.gene25828:CDS |
CTGACGGTATGCTTGAAGTG+TGG | 0.691033 | 3.2:-70164329 | MS.gene25828:CDS |
CGAGTGAAGGAGTGGAAGCG+CGG | 0.692324 | 3.2:+70165588 | None:intergenic |
AGCATGCTATAATTGTGGCG+AGG | 0.714278 | 3.2:-70164607 | MS.gene25828:CDS |
GGACCAGTTGGAGTCCTGCG+GGG | 0.722458 | 3.2:-70161685 | MS.gene25828:CDS |
GGAGTTCTAAAATTTCTAGG+GGG | 0.732106 | 3.2:-70161601 | MS.gene25828:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAATAAATAACAAAGAAA+AGG | + | chr3.2:70164815-70164834 | None:intergenic | 10.0% |
!!! | ATATATTAATAATTTGCTAA+AGG | - | chr3.2:70162849-70162868 | MS.gene25828:intron | 10.0% |
!!! | TATTTTAAGATACAAAAATA+TGG | + | chr3.2:70164098-70164117 | None:intergenic | 10.0% |
!! | AAACTTAACATAATATATTC+AGG | + | chr3.2:70164174-70164193 | None:intergenic | 15.0% |
!! | ATTAAAATAGTGAATTCAAT+GGG | - | chr3.2:70164227-70164246 | MS.gene25828:intron | 15.0% |
!! | TATTAAAATAGTGAATTCAA+TGG | - | chr3.2:70164226-70164245 | MS.gene25828:intron | 15.0% |
!!! | TTTCTTTCTTTTGTTTAATT+AGG | - | chr3.2:70162945-70162964 | MS.gene25828:intron | 15.0% |
!! | AATCAGATTGTGATTTAATT+TGG | - | chr3.2:70161801-70161820 | MS.gene25828:CDS | 20.0% |
!! | ACATTACTACTAAATAACTT+TGG | + | chr3.2:70163956-70163975 | None:intergenic | 20.0% |
!! | ATGATAGGATAATTAAGAAT+TGG | - | chr3.2:70163856-70163875 | MS.gene25828:intron | 20.0% |
!! | TTACTTCCAAATAAAACTAT+TGG | - | chr3.2:70164480-70164499 | MS.gene25828:intron | 20.0% |
!! | TTTAAAGAAAATGAATACAC+GGG | - | chr3.2:70164941-70164960 | MS.gene25828:intron | 20.0% |
!!! | CTTTAAAGAAAATGAATACA+CGG | - | chr3.2:70164940-70164959 | MS.gene25828:intron | 20.0% |
!!! | TATTTGCCAATAGTTTTATT+TGG | + | chr3.2:70164489-70164508 | None:intergenic | 20.0% |
!!! | TTGATAGTAATTTTATTTCC+TGG | - | chr3.2:70163551-70163570 | MS.gene25828:intron | 20.0% |
! | AAAAAAATTGCGTTGTAACA+TGG | - | chr3.2:70161849-70161868 | MS.gene25828:CDS | 25.0% |
! | AATGTGAGTATAAATTTCAG+AGG | + | chr3.2:70163528-70163547 | None:intergenic | 25.0% |
! | ACAATCTGATTGATATCAAA+AGG | + | chr3.2:70161792-70161811 | None:intergenic | 25.0% |
! | ACATATTATAGCTGAGAAAA+TGG | + | chr3.2:70164447-70164466 | None:intergenic | 25.0% |
! | ATGTGAGTATAAATTTCAGA+GGG | + | chr3.2:70163527-70163546 | None:intergenic | 25.0% |
! | CAATCTGATTGATATCAAAA+GGG | + | chr3.2:70161791-70161810 | None:intergenic | 25.0% |
! | GAAATTTCTTGTTACAAATG+TGG | - | chr3.2:70163039-70163058 | MS.gene25828:intron | 25.0% |
! | TACAGTCTAAAAATTTAGTC+AGG | - | chr3.2:70164766-70164785 | MS.gene25828:intron | 25.0% |
! | TGTTATATCTGTAAGCTATT+TGG | - | chr3.2:70162976-70162995 | MS.gene25828:intron | 25.0% |
! | TTAATAATTATGCACCTTTC+CGG | - | chr3.2:70163098-70163117 | MS.gene25828:intron | 25.0% |
!! | AAAATTCCTCGAACTTTTAT+AGG | + | chr3.2:70162072-70162091 | None:intergenic | 25.0% |
!! | CGTGTATTCATTTTCTTTAA+AGG | + | chr3.2:70164942-70164961 | None:intergenic | 25.0% |
!!! | AATAATTTGCTAAAGGTTCT+TGG | - | chr3.2:70162856-70162875 | MS.gene25828:intron | 25.0% |
!!! | AATGTTTTTGCTTTCTATGT+AGG | - | chr3.2:70162179-70162198 | MS.gene25828:CDS | 25.0% |
!!! | GTAATTTTATTTCCTGGTAT+TGG | - | chr3.2:70163557-70163576 | MS.gene25828:intron | 25.0% |
!!! | TTGATTTGTAGAGACATTTT+AGG | - | chr3.2:70161962-70161981 | MS.gene25828:CDS | 25.0% |
!!! | TTGGAGTTCTAAAATTTCTA+GGG | - | chr3.2:70165474-70165493 | MS.gene25828:CDS | 25.0% |
!!! | TTTTAGGAACTAACCTAAAA+AGG | - | chr3.2:70161978-70161997 | MS.gene25828:CDS | 25.0% |
AAAAAAGAGATGCTTATCTC+CGG | + | chr3.2:70163128-70163147 | None:intergenic | 30.0% | |
AACACAAATATTTATGCGAG+TGG | - | chr3.2:70165430-70165449 | MS.gene25828:CDS | 30.0% | |
AAGAAATCAAAAAGTAGAGG+TGG | - | chr3.2:70165115-70165134 | MS.gene25828:intron | 30.0% | |
AATGATTGGAAGAGATTATC+AGG | + | chr3.2:70163305-70163324 | None:intergenic | 30.0% | |
AGAATGCACATATTCTATCA+AGG | - | chr3.2:70164743-70164762 | MS.gene25828:intron | 30.0% | |
ATGGTATAGAAAATGTGGTA+GGG | - | chr3.2:70163661-70163680 | MS.gene25828:intron | 30.0% | |
CATCTATGGTATAGAAAATG+TGG | - | chr3.2:70163656-70163675 | MS.gene25828:intron | 30.0% | |
CCTAAGAAATCAAAAAGTAG+AGG | - | chr3.2:70165112-70165131 | MS.gene25828:intron | 30.0% | |
CTCTACTCTTAGATTTCTTT+GGG | + | chr3.2:70165183-70165202 | None:intergenic | 30.0% | |
CTTTAAGCTTGATTCATGAT+AGG | - | chr3.2:70163841-70163860 | MS.gene25828:intron | 30.0% | |
GGATATTCCCTAAAAATGAA+TGG | - | chr3.2:70163877-70163896 | MS.gene25828:intron | 30.0% | |
GGGAATCAAGTAAGTTTAAA+AGG | + | chr3.2:70163507-70163526 | None:intergenic | 30.0% | |
GGTAATGAATAGCAGAAAAA+GGG | - | chr3.2:70163446-70163465 | MS.gene25828:intron | 30.0% | |
TAAAGCTTCTTTCTTCTGTA+GGG | + | chr3.2:70165156-70165175 | None:intergenic | 30.0% | |
TATGGTATAGAAAATGTGGT+AGG | - | chr3.2:70163660-70163679 | MS.gene25828:intron | 30.0% | |
TCAAATCCTATAAAAGTTCG+AGG | - | chr3.2:70162063-70162082 | MS.gene25828:CDS | 30.0% | |
TCTACAAATCAATTCCTACT+TGG | + | chr3.2:70161954-70161973 | None:intergenic | 30.0% | |
TCTACTCTTAGATTTCTTTG+GGG | + | chr3.2:70165182-70165201 | None:intergenic | 30.0% | |
TGACATTTAAGGGTAATGAT+TGG | + | chr3.2:70163319-70163338 | None:intergenic | 30.0% | |
TGATAGAATATGTGCATTCT+CGG | + | chr3.2:70164743-70164762 | None:intergenic | 30.0% | |
TGCTACAATGAAAGTTAGAT+TGG | - | chr3.2:70163633-70163652 | MS.gene25828:intron | 30.0% | |
TTAAACCTTCATAAGCCAAT+AGG | + | chr3.2:70162604-70162623 | None:intergenic | 30.0% | |
TTAATAAAACAACACCCACT+TGG | - | chr3.2:70162132-70162151 | MS.gene25828:CDS | 30.0% | |
TTAATCAAATCATGCCAAGT+AGG | - | chr3.2:70161937-70161956 | MS.gene25828:CDS | 30.0% | |
TTGTAACAAGAAATTTCTCC+CGG | + | chr3.2:70163036-70163055 | None:intergenic | 30.0% | |
TTTCAAAATAGTGTACCACA+AGG | - | chr3.2:70162363-70162382 | MS.gene25828:CDS | 30.0% | |
! | ATTGGCTTATGAAGGTTTAA+AGG | - | chr3.2:70162604-70162623 | MS.gene25828:intron | 30.0% |
! | GAAGCATTAGTAAGAATAGT+AGG | - | chr3.2:70163726-70163745 | MS.gene25828:intron | 30.0% |
! | TGGTAATGAATAGCAGAAAA+AGG | - | chr3.2:70163445-70163464 | MS.gene25828:intron | 30.0% |
!! | ATTGTGATTTAATTTGGAGC+TGG | - | chr3.2:70161807-70161826 | MS.gene25828:CDS | 30.0% |
!! | GCTTTCTATGTAGGTTTTAA+TGG | - | chr3.2:70162188-70162207 | MS.gene25828:intron | 30.0% |
!! | GTTGGAGTTCTAAAATTTCT+AGG | - | chr3.2:70165473-70165492 | MS.gene25828:CDS | 30.0% |
!! | TGGAGTTCTAAAATTTCTAG+GGG | - | chr3.2:70165475-70165494 | MS.gene25828:CDS | 30.0% |
!!! | CCTCTACTTTTTGATTTCTT+AGG | + | chr3.2:70165115-70165134 | None:intergenic | 30.0% |
AAAACAACCTTGAGATCATC+CGG | + | chr3.2:70162817-70162836 | None:intergenic | 35.0% | |
AAAATGAATACACGGGACAT+TGG | - | chr3.2:70164948-70164967 | MS.gene25828:intron | 35.0% | |
AAGAAACCATGCTATGTATG+TGG | - | chr3.2:70162531-70162550 | MS.gene25828:CDS | 35.0% | |
AAGAAATCTAAGAGTAGAGG+TGG | - | chr3.2:70165184-70165203 | MS.gene25828:intron | 35.0% | |
AAGTTTCAAAGTGAGACTAC+TGG | - | chr3.2:70164666-70164685 | MS.gene25828:intron | 35.0% | |
AATATTTATGCGAGTGGTAG+TGG | - | chr3.2:70165436-70165455 | MS.gene25828:CDS | 35.0% | |
ACATTGTAAAGTCTCTAGTG+TGG | + | chr3.2:70163228-70163247 | None:intergenic | 35.0% | |
AGAATGCACAAGTTCTATCA+GGG | - | chr3.2:70164620-70164639 | MS.gene25828:CDS | 35.0% | |
AGATATTCGTCATCAAGGTT+TGG | - | chr3.2:70165559-70165578 | MS.gene25828:CDS | 35.0% | |
AGTAAGAATAGTAGGCTAGA+TGG | - | chr3.2:70163734-70163753 | MS.gene25828:intron | 35.0% | |
ATAGCCATTGGGACATTAAA+AGG | + | chr3.2:70164036-70164055 | None:intergenic | 35.0% | |
ATCGTAGATATTCGTCATCA+AGG | - | chr3.2:70165554-70165573 | MS.gene25828:CDS | 35.0% | |
ATCTGAGTATCAATTGATGC+AGG | - | chr3.2:70164512-70164531 | MS.gene25828:CDS | 35.0% | |
ATGCAGGAATGATTATTCAC+CGG | - | chr3.2:70162795-70162814 | MS.gene25828:intron | 35.0% | |
ATTTAACTCCAAGTTCTCAG+TGG | + | chr3.2:70163815-70163834 | None:intergenic | 35.0% | |
CAACACCTAAGAAATCAAAG+AGG | - | chr3.2:70165038-70165057 | MS.gene25828:intron | 35.0% | |
CAGCATCAGAGTGATTTAAT+TGG | - | chr3.2:70162001-70162020 | MS.gene25828:CDS | 35.0% | |
CCAAAGAAATCTAAGAGTAG+AGG | - | chr3.2:70165181-70165200 | MS.gene25828:intron | 35.0% | |
CCTCTACTCTTAGATTTCTT+TGG | + | chr3.2:70165184-70165203 | None:intergenic | 35.0% | |
GAAAGTTAGATTGGCATCTA+TGG | - | chr3.2:70163642-70163661 | MS.gene25828:intron | 35.0% | |
GAGGGAAAACATTTGAAAAC+TGG | - | chr3.2:70163781-70163800 | MS.gene25828:intron | 35.0% | |
GATAGAATATGTGCATTCTC+GGG | + | chr3.2:70164742-70164761 | None:intergenic | 35.0% | |
GCAAAACGCACAAAAAGAAA+CGG | - | chr3.2:70164990-70165009 | MS.gene25828:intron | 35.0% | |
GGAAAACATTTGAAAACTGG+AGG | - | chr3.2:70163784-70163803 | MS.gene25828:intron | 35.0% | |
GTAAAGCTTCTTTCTTCTGT+AGG | + | chr3.2:70165157-70165176 | None:intergenic | 35.0% | |
GTATAGCTTCTTTCTTCTGT+AGG | + | chr3.2:70165088-70165107 | None:intergenic | 35.0% | |
GTCACAGTATTGTCAAATAG+CGG | + | chr3.2:70163420-70163439 | None:intergenic | 35.0% | |
TACCTGAACCAACAAAGATA+AGG | + | chr3.2:70163687-70163706 | None:intergenic | 35.0% | |
TCTCCTATATCCATCATCAT+TGG | + | chr3.2:70165590-70165609 | None:intergenic | 35.0% | |
TGACAATACTGTGACATGTA+TGG | - | chr3.2:70163425-70163444 | MS.gene25828:intron | 35.0% | |
TGCTGCAAAACAATGTTCTA+AGG | - | chr3.2:70162566-70162585 | MS.gene25828:intron | 35.0% | |
TGGATATAGGAGAAGTAGTT+CGG | - | chr3.2:70165597-70165616 | MS.gene25828:CDS | 35.0% | |
TGTTACAAATGTGGTCAGAT+GGG | - | chr3.2:70163048-70163067 | MS.gene25828:intron | 35.0% | |
TTAAAGTCTCTATCTTCTGC+AGG | + | chr3.2:70165295-70165314 | None:intergenic | 35.0% | |
TTGAGTTTGCATTGGAATAG+TGG | - | chr3.2:70162879-70162898 | MS.gene25828:intron | 35.0% | |
TTGTTACAAATGTGGTCAGA+TGG | - | chr3.2:70163047-70163066 | MS.gene25828:intron | 35.0% | |
! | AGATTTCTGAGGAGGTAAAA+CGG | + | chr3.2:70161623-70161642 | None:intergenic | 35.0% |
! | ATATCTACGATGGAAAGCAT+CGG | + | chr3.2:70165545-70165564 | None:intergenic | 35.0% |
! | ATGTTTCTTTTCTATCAGCG+GGG | - | chr3.2:70162411-70162430 | MS.gene25828:CDS | 35.0% |
! | CGATGTTTCTTTTCTATCAG+CGG | - | chr3.2:70162409-70162428 | MS.gene25828:CDS | 35.0% |
! | GAGCATTTTACTGAAGAAAG+AGG | - | chr3.2:70165217-70165236 | MS.gene25828:intron | 35.0% |
! | GATGTTTCTTTTCTATCAGC+GGG | - | chr3.2:70162410-70162429 | MS.gene25828:CDS | 35.0% |
! | TTGCGGATTGCAAAAAATAG+CGG | - | chr3.2:70163349-70163368 | MS.gene25828:intron | 35.0% |
!! | ACTCCAATGATGATGGATAT+AGG | - | chr3.2:70165584-70165603 | MS.gene25828:CDS | 35.0% |
!! | ATTGACAGCACTGACATTTA+AGG | + | chr3.2:70163330-70163349 | None:intergenic | 35.0% |
!! | GCAGCATCCATTCATTTTTA+GGG | + | chr3.2:70163887-70163906 | None:intergenic | 35.0% |
!! | GGAGTTCTAAAATTTCTAGG+GGG | - | chr3.2:70165476-70165495 | MS.gene25828:CDS | 35.0% |
!! | TGCAGCATCCATTCATTTTT+AGG | + | chr3.2:70163888-70163907 | None:intergenic | 35.0% |
!! | TTGACAGCACTGACATTTAA+GGG | + | chr3.2:70163329-70163348 | None:intergenic | 35.0% |
!! | TTGATGACGAATATCTACGA+TGG | + | chr3.2:70165555-70165574 | None:intergenic | 35.0% |
!!! | GAAATTTTAGAACTCCAACC+TGG | + | chr3.2:70165472-70165491 | None:intergenic | 35.0% |
AACTCACCACATACATAGCA+TGG | + | chr3.2:70162540-70162559 | None:intergenic | 40.0% | |
AAGAAATCAAAGAGGAGAGG+TGG | - | chr3.2:70165046-70165065 | MS.gene25828:intron | 40.0% | |
AAGAATAGTAGGCTAGATGG+AGG | - | chr3.2:70163737-70163756 | MS.gene25828:intron | 40.0% | |
AATCAAAAAGTAGAGGTGGC+TGG | - | chr3.2:70165119-70165138 | MS.gene25828:intron | 40.0% | |
AATGTCAGTGCTGTCAATTG+CGG | - | chr3.2:70163332-70163351 | MS.gene25828:intron | 40.0% | |
AATTGATGCAGGCATGTTCA+AGG | - | chr3.2:70164523-70164542 | MS.gene25828:CDS | 40.0% | |
ACCACAAGGAATGCTTAGTT+GGG | - | chr3.2:70162377-70162396 | MS.gene25828:CDS | 40.0% | |
ACCTCTGCTCTTGAATTTCA+TGG | + | chr3.2:70165323-70165342 | None:intergenic | 40.0% | |
ATAGCTGAGAAAATGGCCTT+GGG | + | chr3.2:70164440-70164459 | None:intergenic | 40.0% | |
ATCAGAAGCTCAGATTTCTG+AGG | + | chr3.2:70161634-70161653 | None:intergenic | 40.0% | |
ATCCAAGTGATTCTCCAAGT+GGG | + | chr3.2:70162149-70162168 | None:intergenic | 40.0% | |
ATGAAATTCAAGAGCAGAGG+TGG | - | chr3.2:70165322-70165341 | MS.gene25828:intron | 40.0% | |
ATGCTATGTATGTGGTGAGT+TGG | - | chr3.2:70162539-70162558 | MS.gene25828:CDS | 40.0% | |
ATGCTGCATCGTAACTAACA+AGG | - | chr3.2:70163900-70163919 | MS.gene25828:intron | 40.0% | |
ATGGGAGCTAAAACTTTGAG+CGG | - | chr3.2:70164245-70164264 | MS.gene25828:intron | 40.0% | |
ATTGGGACATTAAAAGGTGG+AGG | + | chr3.2:70164030-70164049 | None:intergenic | 40.0% | |
CAGAAAAAGGGACTTCGTAA+AGG | - | chr3.2:70163458-70163477 | MS.gene25828:intron | 40.0% | |
CCAAATCGAAGTGTATGTGT+TGG | - | chr3.2:70161682-70161701 | MS.gene25828:CDS | 40.0% | |
CCAACACATACACTTCGATT+TGG | + | chr3.2:70161685-70161704 | None:intergenic | 40.0% | |
CCTAAGAAATCAAAGAGGAG+AGG | - | chr3.2:70165043-70165062 | MS.gene25828:intron | 40.0% | |
CCTCTGCTCTTGAATTTCAT+GGG | + | chr3.2:70165322-70165341 | None:intergenic | 40.0% | |
CTGTATACTTTCTCGTACGA+GGG | - | chr3.2:70163168-70163187 | MS.gene25828:intron | 40.0% | |
CTTGAGACTCAGATCTTGAT+TGG | + | chr3.2:70161548-70161567 | None:intergenic | 40.0% | |
GACCTTAGCTACTACACTTA+AGG | + | chr3.2:70163984-70164003 | None:intergenic | 40.0% | |
GAGAATGCACAAGTTCTATC+AGG | - | chr3.2:70164619-70164638 | MS.gene25828:CDS | 40.0% | |
GCTTGAAGTGTGGAAATTCT+GGG | - | chr3.2:70162758-70162777 | MS.gene25828:intron | 40.0% | |
GCTTTAACCTTACAAGAGGA+TGG | + | chr3.2:70164072-70164091 | None:intergenic | 40.0% | |
GGTGCTTACATGTGTGTATT+TGG | + | chr3.2:70164006-70164025 | None:intergenic | 40.0% | |
GTATACTGAGATCTGCTTGA+TGG | - | chr3.2:70162630-70162649 | MS.gene25828:intron | 40.0% | |
GTTCTTGGTTGAGTTTGCAT+TGG | - | chr3.2:70162871-70162890 | MS.gene25828:intron | 40.0% | |
TACCACAAGGAATGCTTAGT+TGG | - | chr3.2:70162376-70162395 | MS.gene25828:CDS | 40.0% | |
TATAGCTGAGAAAATGGCCT+TGG | + | chr3.2:70164441-70164460 | None:intergenic | 40.0% | |
TATCAGGGTACAATTGATGC+AGG | - | chr3.2:70164635-70164654 | MS.gene25828:CDS | 40.0% | |
TATCCAAGTGATTCTCCAAG+TGG | + | chr3.2:70162150-70162169 | None:intergenic | 40.0% | |
TCAGAAATCTGAGCTTCTGA+TGG | - | chr3.2:70161633-70161652 | MS.gene25828:CDS | 40.0% | |
TCTCTTCTTCCAAGTCCAAT+AGG | - | chr3.2:70165371-70165390 | MS.gene25828:intron | 40.0% | |
TCTGGAGGGTCAAAATATCT+TGG | + | chr3.2:70162438-70162457 | None:intergenic | 40.0% | |
TGCCTTAAGTGTAGTAGCTA+AGG | - | chr3.2:70163979-70163998 | MS.gene25828:intron | 40.0% | |
TGCTATGTATGTGGTGAGTT+GGG | - | chr3.2:70162540-70162559 | MS.gene25828:CDS | 40.0% | |
TGCTTGAAGTGTGGAAATTC+TGG | - | chr3.2:70162757-70162776 | MS.gene25828:intron | 40.0% | |
TGGAAGAAGAGAATTCTCCA+GGG | + | chr3.2:70165363-70165382 | None:intergenic | 40.0% | |
TTATTCACCGGATGATCTCA+AGG | - | chr3.2:70162807-70162826 | MS.gene25828:intron | 40.0% | |
TTGGAAGAAGAGAATTCTCC+AGG | + | chr3.2:70165364-70165383 | None:intergenic | 40.0% | |
TTGGGACATTAAAAGGTGGA+GGG | + | chr3.2:70164029-70164048 | None:intergenic | 40.0% | |
TTGTCAAATAGCGGCTATAG+AGG | + | chr3.2:70163411-70163430 | None:intergenic | 40.0% | |
TTTCGATTCTCGTGTTCGAA+GGG | + | chr3.2:70161584-70161603 | None:intergenic | 40.0% | |
TTTGGCAACTCCAATGATGA+TGG | - | chr3.2:70165577-70165596 | MS.gene25828:CDS | 40.0% | |
! | AAAATTTCTAGGGGGTGGAT+GGG | - | chr3.2:70165484-70165503 | MS.gene25828:CDS | 40.0% |
! | AAGGGTATAGGAGAGGTAAT+TGG | - | chr3.2:70165647-70165666 | MS.gene25828:CDS | 40.0% |
! | ATCTGCTTGATGGTCATGTA+GGG | - | chr3.2:70162640-70162659 | MS.gene25828:intron | 40.0% |
! | CCTCTCCTCTTTGATTTCTT+AGG | + | chr3.2:70165046-70165065 | None:intergenic | 40.0% |
! | GCAAGCTTTAACCTTACAAG+AGG | + | chr3.2:70164076-70164095 | None:intergenic | 40.0% |
! | GGCATGATATGTTTTCATGC+AGG | - | chr3.2:70162779-70162798 | MS.gene25828:intron | 40.0% |
! | TAAAATTTCTAGGGGGTGGA+TGG | - | chr3.2:70165483-70165502 | MS.gene25828:CDS | 40.0% |
! | TACAGAGAAGCATGAATCTG+TGG | - | chr3.2:70162245-70162264 | MS.gene25828:intron | 40.0% |
! | TCCACCTTTTAATGTCCCAA+TGG | - | chr3.2:70164029-70164048 | MS.gene25828:CDS | 40.0% |
! | TGCGGATTGCAAAAAATAGC+GGG | - | chr3.2:70163350-70163369 | MS.gene25828:intron | 40.0% |
!! | ATAGAGGAGCAGTAGTTTTG+TGG | + | chr3.2:70163395-70163414 | None:intergenic | 40.0% |
!! | CAGCATTGACACAACATAAG+TGG | + | chr3.2:70163002-70163021 | None:intergenic | 40.0% |
!! | CTTTTGAAAGCTTTGACCCA+AGG | - | chr3.2:70164421-70164440 | MS.gene25828:intron | 40.0% |
!! | GTTCTAAAATTTCTAGGGGG+TGG | - | chr3.2:70165479-70165498 | MS.gene25828:CDS | 40.0% |
AAGAAATCGAAGAGCAGAGG+TGG | - | chr3.2:70165253-70165272 | MS.gene25828:intron | 45.0% | |
AAGCCTCTTTCGTCTGTATG+AGG | + | chr3.2:70165016-70165035 | None:intergenic | 45.0% | |
AATCTAAGAGTAGAGGTGGC+TGG | - | chr3.2:70165188-70165207 | MS.gene25828:intron | 45.0% | |
ACCCAACTAAGCATTCCTTG+TGG | + | chr3.2:70162381-70162400 | None:intergenic | 45.0% | |
ACCTCTGCTCTTCGATTTCT+TGG | + | chr3.2:70165254-70165273 | None:intergenic | 45.0% | |
ACTCCTTCACTCGTATTCAG+CGG | - | chr3.2:70161499-70161518 | MS.gene25828:CDS | 45.0% | |
AGATCTGAGTCTCAAGATCG+TGG | - | chr3.2:70161552-70161571 | MS.gene25828:CDS | 45.0% | |
AGCATGCTATAATTGTGGCG+AGG | - | chr3.2:70162470-70162489 | MS.gene25828:CDS | 45.0% | |
AGGTATGTCTGCTTGCCTAT+TGG | - | chr3.2:70162586-70162605 | MS.gene25828:intron | 45.0% | |
AGTAGTTCGGCATCAAGGTT+TGG | - | chr3.2:70165610-70165629 | MS.gene25828:CDS | 45.0% | |
AGTCCACTAGTTACACGTAG+AGG | - | chr3.2:70163762-70163781 | MS.gene25828:intron | 45.0% | |
AGTTGCTACGTCTGCAAGAA+AGG | - | chr3.2:70162667-70162686 | MS.gene25828:intron | 45.0% | |
CCACACCTACTTTGTGCTAT+AGG | - | chr3.2:70164571-70164590 | MS.gene25828:CDS | 45.0% | |
CCACACCTATAGCACAAAGT+AGG | + | chr3.2:70164579-70164598 | None:intergenic | 45.0% | |
CCATCAACCATCCTCTTGTA+AGG | - | chr3.2:70164062-70164081 | MS.gene25828:CDS | 45.0% | |
CCCATGAAATTCAAGAGCAG+AGG | - | chr3.2:70165319-70165338 | MS.gene25828:intron | 45.0% | |
CCTACTTTGTGCTATAGGTG+TGG | - | chr3.2:70164576-70164595 | MS.gene25828:CDS | 45.0% | |
CCTATAGCACAAAGTAGGTG+TGG | + | chr3.2:70164574-70164593 | None:intergenic | 45.0% | |
CCTCTGCTCTTCGATTTCTT+GGG | + | chr3.2:70165253-70165272 | None:intergenic | 45.0% | |
CCTGTATACTTTCTCGTACG+AGG | - | chr3.2:70163167-70163186 | MS.gene25828:intron | 45.0% | |
CCTTACAAGAGGATGGTTGA+TGG | + | chr3.2:70164065-70164084 | None:intergenic | 45.0% | |
CTCTGCTCTTCGATTTCTTG+GGG | + | chr3.2:70165252-70165271 | None:intergenic | 45.0% | |
CTGAAGCCTCATATTCCCAA+GGG | - | chr3.2:70165515-70165534 | MS.gene25828:CDS | 45.0% | |
GAAGCATGAATCTGTGGAAC+TGG | - | chr3.2:70162251-70162270 | MS.gene25828:intron | 45.0% | |
GATGGACACTGATAGCCATT+GGG | + | chr3.2:70164047-70164066 | None:intergenic | 45.0% | |
GCCATTGGGACATTAAAAGG+TGG | + | chr3.2:70164033-70164052 | None:intergenic | 45.0% | |
GGATCAGATAGGTGACAACA+TGG | - | chr3.2:70162284-70162303 | MS.gene25828:intron | 45.0% | |
GGTATAGGAGAGGTAATTGG+TGG | - | chr3.2:70165650-70165669 | MS.gene25828:CDS | 45.0% | |
GTCAAGCTGAAGCTTGATGT+AGG | - | chr3.2:70163593-70163612 | MS.gene25828:intron | 45.0% | |
GTCCACTAGTTACACGTAGA+GGG | - | chr3.2:70163763-70163782 | MS.gene25828:intron | 45.0% | |
GTTTCGATTCTCGTGTTCGA+AGG | + | chr3.2:70161585-70161604 | None:intergenic | 45.0% | |
TAAACTGTACAGCAGCGAAG+CGG | - | chr3.2:70162508-70162527 | MS.gene25828:CDS | 45.0% | |
TCAAAGTGAGACTACTGGTG+CGG | - | chr3.2:70164671-70164690 | MS.gene25828:intron | 45.0% | |
TCAAGGTTTGGCAACTCTAG+TGG | - | chr3.2:70165622-70165641 | MS.gene25828:CDS | 45.0% | |
TCTGCTCTTCGATTTCTTGG+GGG | + | chr3.2:70165251-70165270 | None:intergenic | 45.0% | |
TGACCCTCCAGATAGTAGTT+GGG | - | chr3.2:70162446-70162465 | MS.gene25828:CDS | 45.0% | |
TGCTATAATTGTGGCGAGGA+AGG | - | chr3.2:70162474-70162493 | MS.gene25828:CDS | 45.0% | |
TGGGACATTAAAAGGTGGAG+GGG | + | chr3.2:70164028-70164047 | None:intergenic | 45.0% | |
TGTGCTATAGGTGTGGTGAA+GGG | - | chr3.2:70164583-70164602 | MS.gene25828:CDS | 45.0% | |
TTCCCTCTACGTGTAACTAG+TGG | + | chr3.2:70163768-70163787 | None:intergenic | 45.0% | |
TTGACCCTCCAGATAGTAGT+TGG | - | chr3.2:70162445-70162464 | MS.gene25828:CDS | 45.0% | |
TTGGCAACTCTAGTGGTGAA+GGG | - | chr3.2:70165629-70165648 | MS.gene25828:CDS | 45.0% | |
TTGTGCTATAGGTGTGGTGA+AGG | - | chr3.2:70164582-70164601 | MS.gene25828:CDS | 45.0% | |
TTTAATGGCTGCAGAGCAAG+AGG | - | chr3.2:70162203-70162222 | MS.gene25828:intron | 45.0% | |
TTTGGCAACTCTAGTGGTGA+AGG | - | chr3.2:70165628-70165647 | MS.gene25828:CDS | 45.0% | |
! | ACGGGCTTCTAAAAGTCTGA+CGG | - | chr3.2:70162732-70162751 | MS.gene25828:intron | 45.0% |
! | ACTCTAGTGGTGAAGGGTAT+AGG | - | chr3.2:70165635-70165654 | MS.gene25828:CDS | 45.0% |
! | AGAAGCTCAGATTTCTGAGG+AGG | + | chr3.2:70161631-70161650 | None:intergenic | 45.0% |
! | CACTCTGATGCTGCCTTTTT+AGG | + | chr3.2:70161994-70162013 | None:intergenic | 45.0% |
! | CCTCGTACGAGAAAGTATAC+AGG | + | chr3.2:70163170-70163189 | None:intergenic | 45.0% |
! | GATCTGCTTGATGGTCATGT+AGG | - | chr3.2:70162639-70162658 | MS.gene25828:intron | 45.0% |
! | TAGGAGAGGTAATTGGTGGT+AGG | - | chr3.2:70165654-70165673 | MS.gene25828:CDS | 45.0% |
! | TCAGATGGGTCATACTGGTT+CGG | - | chr3.2:70163062-70163081 | MS.gene25828:intron | 45.0% |
! | TCTCTGGACAGTCTTTTGCA+CGG | + | chr3.2:70162699-70162718 | None:intergenic | 45.0% |
! | TGATGGACACTGATAGCCAT+TGG | + | chr3.2:70164048-70164067 | None:intergenic | 45.0% |
! | TGGGGAGCATGCTATAATTG+TGG | - | chr3.2:70162465-70162484 | MS.gene25828:CDS | 45.0% |
! | TGGTAGGGCCTTATCTTTGT+TGG | - | chr3.2:70163676-70163695 | MS.gene25828:intron | 45.0% |
!! | CGAGATTGTCGATTGATTCG+TGG | + | chr3.2:70161468-70161487 | None:intergenic | 45.0% |
!! | GCTTGCCTATTGGCTTATGA+AGG | - | chr3.2:70162596-70162615 | MS.gene25828:intron | 45.0% |
!! | GGCCTTATCTTTGTTGGTTC+AGG | - | chr3.2:70163682-70163701 | MS.gene25828:intron | 45.0% |
AAGTAGAGGTGGCTGGACAA+TGG | - | chr3.2:70165126-70165145 | MS.gene25828:intron | 50.0% | |
AATCAAAGAGGAGAGGTGGC+TGG | - | chr3.2:70165050-70165069 | MS.gene25828:intron | 50.0% | |
AATGCTGCTGATGCAACACC+GGG | - | chr3.2:70163015-70163034 | MS.gene25828:intron | 50.0% | |
AATTCAAGAGCAGAGGTGGC+TGG | - | chr3.2:70165326-70165345 | MS.gene25828:intron | 50.0% | |
AGGACTCCAACTGGTCCTAT+TGG | + | chr3.2:70165389-70165408 | None:intergenic | 50.0% | |
AGGTAAAACGGCGTCGTTAG+AGG | + | chr3.2:70161611-70161630 | None:intergenic | 50.0% | |
AGGTCGAACCACTGAGAACT+TGG | - | chr3.2:70163804-70163823 | MS.gene25828:intron | 50.0% | |
AGGTTGCAAGGTGAGACTAC+TGG | - | chr3.2:70164543-70164562 | MS.gene25828:CDS | 50.0% | |
CAATGCTGCTGATGCAACAC+CGG | - | chr3.2:70163014-70163033 | MS.gene25828:intron | 50.0% | |
CACCCACTTGGAGAATCACT+TGG | - | chr3.2:70162144-70162163 | MS.gene25828:CDS | 50.0% | |
CAGGCATGTTCAAGGTTGCA+AGG | - | chr3.2:70164531-70164550 | MS.gene25828:CDS | 50.0% | |
CATGCTCCCCAACTACTATC+TGG | + | chr3.2:70162456-70162475 | None:intergenic | 50.0% | |
CCAACTGGTCCTATTGGACT+TGG | + | chr3.2:70165383-70165402 | None:intergenic | 50.0% | |
CCAAGTCCAATAGGACCAGT+TGG | - | chr3.2:70165380-70165399 | MS.gene25828:intron | 50.0% | |
CCCAAGAAATCGAAGAGCAG+AGG | - | chr3.2:70165250-70165269 | MS.gene25828:intron | 50.0% | |
CCTGAAGCCTCATATTCCCA+AGG | - | chr3.2:70165514-70165533 | MS.gene25828:CDS | 50.0% | |
CCTTGGGAATATGAGGCTTC+AGG | + | chr3.2:70165517-70165536 | None:intergenic | 50.0% | |
CTATTCTTCTTCCCAGCCTG+TGG | + | chr3.2:70164890-70164909 | None:intergenic | 50.0% | |
CTCCCCAACTACTATCTGGA+GGG | + | chr3.2:70162452-70162471 | None:intergenic | 50.0% | |
CTGACGGTATGCTTGAAGTG+TGG | - | chr3.2:70162748-70162767 | MS.gene25828:intron | 50.0% | |
GAAGCGAGTGTGGATCAGAT+AGG | - | chr3.2:70162273-70162292 | MS.gene25828:intron | 50.0% | |
GAAGGAGAAGTCGAAAGCCA+AGG | - | chr3.2:70161435-70161454 | MS.gene25828:CDS | 50.0% | |
GACCCTCCAGATAGTAGTTG+GGG | - | chr3.2:70162447-70162466 | MS.gene25828:CDS | 50.0% | |
GATGCTTATCTCCGGATCTC+CGG | + | chr3.2:70163120-70163139 | None:intergenic | 50.0% | |
GCTATAGGTGTGGTGAAGGA+GGG | - | chr3.2:70164586-70164605 | MS.gene25828:CDS | 50.0% | |
GCTGAATACGAGTGAAGGAG+TGG | + | chr3.2:70161500-70161519 | None:intergenic | 50.0% | |
GGAGAAGTAGTTCGGCATCA+AGG | - | chr3.2:70165605-70165624 | MS.gene25828:CDS | 50.0% | |
GGGACATTAAAAGGTGGAGG+GGG | + | chr3.2:70164027-70164046 | None:intergenic | 50.0% | |
GTGCTATAGGTGTGGTGAAG+GGG | - | chr3.2:70164584-70164603 | MS.gene25828:CDS | 50.0% | |
TAAGAGTAGAGGTGGCTGGA+CGG | - | chr3.2:70165192-70165211 | MS.gene25828:intron | 50.0% | |
TATGCACCTTTCCGGAGATC+CGG | - | chr3.2:70163106-70163125 | MS.gene25828:intron | 50.0% | |
TCTTGCAGACGTAGCAACTC+TGG | + | chr3.2:70162666-70162685 | None:intergenic | 50.0% | |
TGATTCGTGGTCTCTTGCCT+TGG | + | chr3.2:70161455-70161474 | None:intergenic | 50.0% | |
TGCTACGTCTGCAAGAAAGG+TGG | - | chr3.2:70162670-70162689 | MS.gene25828:intron | 50.0% | |
TGCTATAGGTGTGGTGAAGG+AGG | - | chr3.2:70164585-70164604 | MS.gene25828:CDS | 50.0% | |
TGCTATAGGTGTGGTGAAGG+GGG | - | chr3.2:70164585-70164604 | MS.gene25828:CDS | 50.0% | |
TGGTCTGCACCTCTCGATAT+GGG | - | chr3.2:70164968-70164987 | MS.gene25828:intron | 50.0% | |
TGTGGTCAGATGGGTCATAC+TGG | - | chr3.2:70163057-70163076 | MS.gene25828:intron | 50.0% | |
TTATCTCCGGATCTCCGGAA+AGG | + | chr3.2:70163115-70163134 | None:intergenic | 50.0% | |
TTGGTCTGCACCTCTCGATA+TGG | - | chr3.2:70164967-70164986 | MS.gene25828:intron | 50.0% | |
! | ACTTCCGTGTTTTCCTCCAC+AGG | - | chr3.2:70164871-70164890 | MS.gene25828:CDS | 50.0% |
! | AGAGAAGCACATGACTGCAC+GGG | - | chr3.2:70162714-70162733 | MS.gene25828:intron | 50.0% |
! | AGTGGTGAAGGGTATAGGAG+AGG | - | chr3.2:70165640-70165659 | MS.gene25828:CDS | 50.0% |
! | CAGAGAAGCACATGACTGCA+CGG | - | chr3.2:70162713-70162732 | MS.gene25828:intron | 50.0% |
! | TGCGTTTTGCCCATATCGAG+AGG | + | chr3.2:70164980-70164999 | None:intergenic | 50.0% |
!! | CCTGGTATTGGTAACCGTAG+CGG | - | chr3.2:70163569-70163588 | MS.gene25828:intron | 50.0% |
!!! | GGAGCAGTAGTTTTGTGGCA+TGG | + | chr3.2:70163390-70163409 | None:intergenic | 50.0% |
AAGAGTAGAGGTGGCTGGAC+GGG | - | chr3.2:70165193-70165212 | MS.gene25828:intron | 55.0% | |
AATCGAAGAGCAGAGGTGGC+TGG | - | chr3.2:70165257-70165276 | MS.gene25828:intron | 55.0% | |
AATGGCTGCAGAGCAAGAGG+TGG | - | chr3.2:70162206-70162225 | MS.gene25828:intron | 55.0% | |
CCAGCCTGTGGAGGAAAACA+CGG | + | chr3.2:70164878-70164897 | None:intergenic | 55.0% | |
CCGCTACGGTTACCAATACC+AGG | + | chr3.2:70163572-70163591 | None:intergenic | 55.0% | |
CGGCCTCATACAGACGAAAG+AGG | - | chr3.2:70165010-70165029 | MS.gene25828:intron | 55.0% | |
CGTGCAGTCATGTGCTTCTC+TGG | + | chr3.2:70162715-70162734 | None:intergenic | 55.0% | |
CTGCCGCTGAATACGAGTGA+AGG | + | chr3.2:70161505-70161524 | None:intergenic | 55.0% | |
GCTCCCCAACTACTATCTGG+AGG | + | chr3.2:70162453-70162472 | None:intergenic | 55.0% | |
GCTTCAGCTTGACTCCGCTA+CGG | + | chr3.2:70163586-70163605 | None:intergenic | 55.0% | |
GGCTGACCCTTGGGAATATG+AGG | + | chr3.2:70165524-70165543 | None:intergenic | 55.0% | |
GTGGAAGTCGAACTCCAGGT+TGG | - | chr3.2:70165455-70165474 | MS.gene25828:CDS | 55.0% | |
TAGGACCAGTTGGAGTCCTG+CGG | - | chr3.2:70165390-70165409 | MS.gene25828:intron | 55.0% | |
TGTGGAACTGGAAGCGAGTG+TGG | - | chr3.2:70162263-70162282 | MS.gene25828:intron | 55.0% | |
TTCTTCTTCCCAGCCTGTGG+AGG | + | chr3.2:70164887-70164906 | None:intergenic | 55.0% | |
! | CGTGTTTTCCTCCACAGGCT+GGG | - | chr3.2:70164876-70164895 | MS.gene25828:CDS | 55.0% |
!! | GAAAGCATCGGCTGACCCTT+GGG | + | chr3.2:70165533-70165552 | None:intergenic | 55.0% |
!! | GGTAGTGGAAGTCGAACTCC+AGG | - | chr3.2:70165451-70165470 | MS.gene25828:CDS | 55.0% |
AGAGTAGAGGTGGCTGGACG+GGG | - | chr3.2:70165194-70165213 | MS.gene25828:intron | 60.0% | |
AGGACCAGTTGGAGTCCTGC+GGG | - | chr3.2:70165391-70165410 | MS.gene25828:intron | 60.0% | |
CAAGAGCAGAGGTGGCTGGA+TGG | - | chr3.2:70165330-70165349 | MS.gene25828:intron | 60.0% | |
CGAGTGAAGGAGTGGAAGCG+CGG | + | chr3.2:70161492-70161511 | None:intergenic | 60.0% | |
GAGCAGAGGTGGCTGGACAA+CGG | - | chr3.2:70165264-70165283 | MS.gene25828:intron | 60.0% | |
GAGGAGAGGTGGCTGGATGA+CGG | - | chr3.2:70165057-70165076 | MS.gene25828:intron | 60.0% | |
! | CCGTGTTTTCCTCCACAGGC+TGG | - | chr3.2:70164875-70164894 | MS.gene25828:CDS | 60.0% |
!! | GGAAAGCATCGGCTGACCCT+TGG | + | chr3.2:70165534-70165553 | None:intergenic | 60.0% |
GAGTAGAGGTGGCTGGACGG+GGG | - | chr3.2:70165195-70165214 | MS.gene25828:intron | 65.0% | |
GGACCAGTTGGAGTCCTGCG+GGG | - | chr3.2:70165392-70165411 | MS.gene25828:intron | 65.0% | |
GGCTGGATGGCTGATCACCC+TGG | - | chr3.2:70165343-70165362 | MS.gene25828:intron | 65.0% | |
TGTCCCCGCAGGACTCCAAC+TGG | + | chr3.2:70165398-70165417 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 70161424 | 70165675 | 70161424 | ID=MS.gene25828 |
chr3.2 | mRNA | 70161424 | 70165675 | 70161424 | ID=MS.gene25828.t1;Parent=MS.gene25828 |
chr3.2 | exon | 70165406 | 70165675 | 70165406 | ID=MS.gene25828.t1.exon1;Parent=MS.gene25828.t1 |
chr3.2 | CDS | 70165406 | 70165675 | 70165406 | ID=cds.MS.gene25828.t1;Parent=MS.gene25828.t1 |
chr3.2 | exon | 70164776 | 70164898 | 70164776 | ID=MS.gene25828.t1.exon2;Parent=MS.gene25828.t1 |
chr3.2 | CDS | 70164776 | 70164898 | 70164776 | ID=cds.MS.gene25828.t1;Parent=MS.gene25828.t1 |
chr3.2 | exon | 70164512 | 70164670 | 70164512 | ID=MS.gene25828.t1.exon3;Parent=MS.gene25828.t1 |
chr3.2 | CDS | 70164512 | 70164670 | 70164512 | ID=cds.MS.gene25828.t1;Parent=MS.gene25828.t1 |
chr3.2 | exon | 70164271 | 70164438 | 70164271 | ID=MS.gene25828.t1.exon4;Parent=MS.gene25828.t1 |
chr3.2 | CDS | 70164271 | 70164438 | 70164271 | ID=cds.MS.gene25828.t1;Parent=MS.gene25828.t1 |
chr3.2 | exon | 70164016 | 70164132 | 70164016 | ID=MS.gene25828.t1.exon5;Parent=MS.gene25828.t1 |
chr3.2 | CDS | 70164016 | 70164132 | 70164016 | ID=cds.MS.gene25828.t1;Parent=MS.gene25828.t1 |
chr3.2 | exon | 70162335 | 70162565 | 70162335 | ID=MS.gene25828.t1.exon6;Parent=MS.gene25828.t1 |
chr3.2 | CDS | 70162335 | 70162565 | 70162335 | ID=cds.MS.gene25828.t1;Parent=MS.gene25828.t1 |
chr3.2 | exon | 70161424 | 70162206 | 70161424 | ID=MS.gene25828.t1.exon7;Parent=MS.gene25828.t1 |
chr3.2 | CDS | 70161424 | 70162206 | 70161424 | ID=cds.MS.gene25828.t1;Parent=MS.gene25828.t1 |
Gene Sequence |
Protein sequence |