Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25886.t1 | XP_003601303.1 | 94.7 | 206 | 11 | 0 | 1 | 206 | 1 | 206 | 1.50E-92 | 349 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25886.t1 | Q9LZH5 | 38.2 | 199 | 106 | 6 | 3 | 198 | 2 | 186 | 2.3e-20 | 100.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25886.t1 | B7FFE5 | 94.7 | 206 | 11 | 0 | 1 | 206 | 1 | 206 | 1.1e-92 | 349.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050581 | MS.gene25886 | 0.84086 | 6.74E-58 | -1.69E-46 |
| MS.gene052271 | MS.gene25886 | 0.809282 | 2.04E-50 | -1.69E-46 |
| MS.gene055636 | MS.gene25886 | 0.826666 | 2.39E-54 | -1.69E-46 |
| MS.gene058903 | MS.gene25886 | 0.854917 | 8.94E-62 | -1.69E-46 |
| MS.gene059974 | MS.gene25886 | 0.842159 | 3.07E-58 | -1.69E-46 |
| MS.gene060005 | MS.gene25886 | 0.825467 | 4.61E-54 | -1.69E-46 |
| MS.gene060356 | MS.gene25886 | 0.817259 | 3.62E-52 | -1.69E-46 |
| MS.gene060799 | MS.gene25886 | 0.808383 | 3.18E-50 | -1.69E-46 |
| MS.gene060801 | MS.gene25886 | 0.808757 | 2.65E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25886.t1 | MTR_3g079210 | 95.146 | 206 | 10 | 0 | 1 | 206 | 1 | 206 | 1.26e-128 | 360 |
| MS.gene25886.t1 | MTR_5g006950 | 38.400 | 125 | 74 | 2 | 46 | 170 | 24 | 145 | 1.33e-17 | 77.0 |
| MS.gene25886.t1 | MTR_1g103490 | 40.659 | 91 | 51 | 2 | 46 | 136 | 24 | 111 | 7.20e-16 | 72.0 |
| MS.gene25886.t1 | MTR_2g008580 | 40.206 | 97 | 55 | 2 | 34 | 130 | 20 | 113 | 5.40e-15 | 70.9 |
| MS.gene25886.t1 | MTR_2g008560 | 38.182 | 110 | 55 | 4 | 57 | 166 | 39 | 135 | 7.37e-15 | 69.7 |
| MS.gene25886.t1 | MTR_5g070360 | 33.582 | 134 | 79 | 3 | 42 | 175 | 28 | 151 | 1.97e-14 | 68.9 |
| MS.gene25886.t1 | MTR_7g095230 | 36.000 | 125 | 73 | 5 | 47 | 169 | 28 | 147 | 5.83e-13 | 65.1 |
| MS.gene25886.t1 | MTR_1g103450 | 36.792 | 106 | 59 | 3 | 46 | 147 | 24 | 125 | 1.08e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25886.t1 | AT3G43720 | 47.015 | 134 | 63 | 3 | 43 | 169 | 32 | 164 | 3.57e-29 | 107 |
| MS.gene25886.t1 | AT3G43720 | 46.324 | 136 | 63 | 3 | 43 | 169 | 32 | 166 | 2.69e-28 | 105 |
| MS.gene25886.t1 | AT2G27130 | 43.519 | 108 | 59 | 2 | 34 | 140 | 24 | 130 | 1.21e-23 | 93.2 |
| MS.gene25886.t1 | AT3G22600 | 40.698 | 86 | 48 | 2 | 46 | 131 | 24 | 106 | 8.25e-16 | 72.4 |
| MS.gene25886.t1 | AT2G48130 | 33.636 | 110 | 70 | 2 | 50 | 159 | 30 | 136 | 9.45e-16 | 72.4 |
| MS.gene25886.t1 | AT2G48130 | 33.636 | 110 | 70 | 2 | 50 | 159 | 30 | 136 | 9.45e-16 | 72.4 |
| MS.gene25886.t1 | AT2G48130 | 33.636 | 110 | 70 | 2 | 50 | 159 | 30 | 136 | 9.45e-16 | 72.4 |
| MS.gene25886.t1 | AT2G48130 | 33.636 | 110 | 70 | 2 | 50 | 159 | 30 | 136 | 9.45e-16 | 72.4 |
| MS.gene25886.t1 | AT2G48130 | 33.636 | 110 | 70 | 2 | 50 | 159 | 30 | 136 | 9.45e-16 | 72.4 |
| MS.gene25886.t1 | AT2G48130 | 33.636 | 110 | 70 | 2 | 50 | 159 | 30 | 136 | 9.45e-16 | 72.4 |
| MS.gene25886.t1 | AT1G03103 | 35.669 | 157 | 86 | 7 | 49 | 204 | 24 | 166 | 1.40e-15 | 71.6 |
| MS.gene25886.t1 | AT5G64080 | 33.088 | 136 | 78 | 5 | 42 | 173 | 36 | 162 | 1.71e-14 | 68.9 |
| MS.gene25886.t1 | AT5G64080 | 34.848 | 132 | 77 | 5 | 42 | 173 | 36 | 158 | 1.99e-14 | 68.9 |
| MS.gene25886.t1 | AT2G13820 | 30.573 | 157 | 95 | 3 | 50 | 206 | 27 | 169 | 2.66e-14 | 68.2 |
| MS.gene25886.t1 | AT2G13820 | 30.573 | 157 | 95 | 3 | 50 | 206 | 39 | 181 | 4.43e-14 | 67.8 |
| MS.gene25886.t1 | AT4G08670 | 33.742 | 163 | 95 | 6 | 42 | 197 | 40 | 196 | 9.34e-14 | 67.4 |
| MS.gene25886.t1 | AT5G09370 | 34.711 | 121 | 69 | 3 | 50 | 170 | 28 | 138 | 2.60e-13 | 65.5 |
| MS.gene25886.t1 | AT4G14815 | 35.484 | 93 | 57 | 2 | 40 | 132 | 16 | 105 | 2.83e-13 | 65.1 |
| MS.gene25886.t1 | AT5G09370 | 33.884 | 121 | 68 | 3 | 50 | 170 | 28 | 136 | 2.95e-13 | 65.1 |
| MS.gene25886.t1 | AT2G13820 | 37.662 | 77 | 46 | 1 | 54 | 130 | 31 | 105 | 8.12e-13 | 63.2 |
| MS.gene25886.t1 | AT5G09370 | 37.931 | 87 | 49 | 2 | 60 | 146 | 38 | 119 | 1.45e-11 | 60.1 |
Find 53 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCCTTCTGGAAGCAAAAT+TGG | 0.248172 | 3.2:-69652494 | MS.gene25886:CDS |
| GCAGGTGTTCTTAGCCCTTC+TGG | 0.257309 | 3.2:-69652506 | MS.gene25886:intron |
| AACAGCTTACACAAACAAAT+AGG | 0.265322 | 3.2:+69654875 | None:intergenic |
| GGCGCTAAAACCGCGGTTTC+CGG | 0.269928 | 3.2:+69655034 | None:intergenic |
| TTTGCATCACTCTCATTTCA+TGG | 0.285544 | 3.2:-69655097 | MS.gene25886:CDS |
| GGACTTGGGGCTAATCCTTT+TGG | 0.309513 | 3.2:+69652842 | None:intergenic |
| TGGAGTATCTGCTGCTGCTT+TGG | 0.352720 | 3.2:-69655071 | MS.gene25886:CDS |
| CCTCCTGTTAGTGCTTGTTC+AGG | 0.362697 | 3.2:-69654767 | MS.gene25886:intron |
| CTTAAGCTTCCAACTATTTG+TGG | 0.365023 | 3.2:-69654800 | MS.gene25886:CDS |
| ATTTGTTTGTGTAAGCTGTT+AGG | 0.384262 | 3.2:-69654872 | MS.gene25886:CDS |
| TCAACTTCATCTGATAGTTC+AGG | 0.394833 | 3.2:-69652818 | MS.gene25886:intron |
| GTCAGATTGTTTGACATTTG+TGG | 0.406541 | 3.2:-69654969 | MS.gene25886:CDS |
| GAGTTAGCAGGGTTGATTGA+TGG | 0.411939 | 3.2:-69654902 | MS.gene25886:CDS |
| AATGTAAAATCAGAAGAATA+TGG | 0.417381 | 3.2:+69652406 | None:intergenic |
| TCAGGACAACATCCTTTGTC+TGG | 0.420386 | 3.2:+69654923 | None:intergenic |
| TTACCTGAACAAGCACTAAC+AGG | 0.424650 | 3.2:+69654764 | None:intergenic |
| TGTTTGACATTTGTGGAAGA+TGG | 0.446855 | 3.2:-69654962 | MS.gene25886:CDS |
| TCAGATGAAGTTGAAGGACT+TGG | 0.451820 | 3.2:+69652827 | None:intergenic |
| GGTAATGCTGCTGATTCTAT+TGG | 0.462047 | 3.2:-69654848 | MS.gene25886:CDS |
| ACAGCTTACACAAACAAATA+GGG | 0.462564 | 3.2:+69654876 | None:intergenic |
| AAAACCGCGGTTTCCGGTGC+CGG | 0.471159 | 3.2:+69655040 | None:intergenic |
| GCGCCATCACCGGCAGATGA+TGG | 0.475243 | 3.2:-69655016 | MS.gene25886:CDS |
| GGCAGATGATGGATGCTTGA+TGG | 0.475901 | 3.2:-69655005 | MS.gene25886:CDS |
| GGATGTTGTCCTGAGTTAGC+AGG | 0.476788 | 3.2:-69654914 | MS.gene25886:CDS |
| TGCTGCTTTGGCTCAATCAC+CGG | 0.486295 | 3.2:-69655059 | MS.gene25886:CDS |
| GTTTGACATTTGTGGAAGAT+GGG | 0.488176 | 3.2:-69654961 | MS.gene25886:CDS |
| TCACTCTCATTTCATGGAGA+TGG | 0.490910 | 3.2:-69655091 | MS.gene25886:CDS |
| GTAGTAACACCACAAATAGT+TGG | 0.491016 | 3.2:+69654791 | None:intergenic |
| GAACTATCAGATGAAGTTGA+AGG | 0.493768 | 3.2:+69652821 | None:intergenic |
| CAGATGAAGTTGAAGGACTT+GGG | 0.496998 | 3.2:+69652828 | None:intergenic |
| CATCCATCATCTGCCGGTGA+TGG | 0.511093 | 3.2:+69655013 | None:intergenic |
| TTTGGCTCAATCACCGGCAC+CGG | 0.516118 | 3.2:-69655053 | MS.gene25886:CDS |
| GATATGGCAATGTCACCAAA+AGG | 0.530694 | 3.2:-69652857 | MS.gene25886:CDS |
| CCTTCTGGAAGCAAAATTGG+AGG | 0.554339 | 3.2:-69652491 | MS.gene25886:CDS |
| TGCAGAGGCTTGAATGCTTG+AGG | 0.572865 | 3.2:+69652466 | None:intergenic |
| TCAATCAACCCTGCTAACTC+AGG | 0.575923 | 3.2:+69654905 | None:intergenic |
| TCCACTCAGTGATGGAGGCA+AGG | 0.577085 | 3.2:+69653028 | None:intergenic |
| CGGTGATGGCGCTAAAACCG+CGG | 0.578610 | 3.2:+69655027 | None:intergenic |
| TGGAGACAGAGACAGTGGAC+AGG | 0.579721 | 3.2:+69652426 | None:intergenic |
| ATAGCATCTCCACTCAGTGA+TGG | 0.584097 | 3.2:+69653020 | None:intergenic |
| ATCAAGCATCCATCATCTGC+CGG | 0.595406 | 3.2:+69655007 | None:intergenic |
| GATGTTGTCCTGAGTTAGCA+GGG | 0.597137 | 3.2:-69654913 | MS.gene25886:CDS |
| TGCAAAGAGTAAAGAAACAA+TGG | 0.599464 | 3.2:+69655114 | None:intergenic |
| GAATATGGAGACAGAGACAG+TGG | 0.605345 | 3.2:+69652421 | None:intergenic |
| GCATCTCCACTCAGTGATGG+AGG | 0.609350 | 3.2:+69653023 | None:intergenic |
| AGATGAAGTTGAAGGACTTG+GGG | 0.617347 | 3.2:+69652829 | None:intergenic |
| GGAGACAGAGACAGTGGACA+GGG | 0.621999 | 3.2:+69652427 | None:intergenic |
| AGTGATGGAGGCAAGGACAC+AGG | 0.629179 | 3.2:+69653035 | None:intergenic |
| TGTTTGTGTAAGCTGTTAGG+TGG | 0.635667 | 3.2:-69654869 | MS.gene25886:CDS |
| TCCTTGCCTCCATCACTGAG+TGG | 0.643834 | 3.2:-69653029 | MS.gene25886:CDS |
| ATCACCGGCACCGGAAACCG+CGG | 0.645420 | 3.2:-69655044 | MS.gene25886:CDS |
| AAGTTGACAAAACCAGACAA+AGG | 0.698102 | 3.2:-69654935 | MS.gene25886:CDS |
| CCTGAACAAGCACTAACAGG+AGG | 0.707608 | 3.2:+69654767 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr3.2:69652915-69652934 | MS.gene25886:intron | 0.0% |
| !! | TTTAAATAATGTTAAAACAA+AGG | + | chr3.2:69653765-69653784 | None:intergenic | 10.0% |
| !!! | TGTTCAAATTTTAAAATATT+TGG | - | chr3.2:69652850-69652869 | MS.gene25886:CDS | 10.0% |
| !! | AAAAGAAAATAAAAAAAGAG+TGG | + | chr3.2:69654326-69654345 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr3.2:69653333-69653352 | None:intergenic | 15.0% |
| !! | AACAACAATAAATTAACTTA+TGG | + | chr3.2:69654577-69654596 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr3.2:69653332-69653351 | MS.gene25886:intron | 15.0% |
| !! | ACAATTATTAAATTCAAAGA+AGG | + | chr3.2:69653940-69653959 | None:intergenic | 15.0% |
| !! | ATATAAAAGATGCTATAATT+TGG | - | chr3.2:69652965-69652984 | MS.gene25886:intron | 15.0% |
| !! | ATATGAATTATTCAAAAAGT+TGG | + | chr3.2:69654000-69654019 | None:intergenic | 15.0% |
| !! | GATAAAAATAATTGACAAAA+TGG | + | chr3.2:69653459-69653478 | None:intergenic | 15.0% |
| !! | GTTAAAATATACACTATAAT+TGG | - | chr3.2:69653816-69653835 | MS.gene25886:intron | 15.0% |
| !! | TAATGATCATAAATATCAAT+CGG | - | chr3.2:69654849-69654868 | MS.gene25886:CDS | 15.0% |
| !! | TTATATATTACCAATGATTA+TGG | - | chr3.2:69653653-69653672 | MS.gene25886:intron | 15.0% |
| !! | TTGATAAAATAATGAAGATA+TGG | - | chr3.2:69654681-69654700 | MS.gene25886:intron | 15.0% |
| !!! | ATTTTTAAGTTTTGTTTGAT+AGG | + | chr3.2:69653604-69653623 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr3.2:69653206-69653225 | None:intergenic | 15.0% |
| !!! | GTGTTACAATTATTTATTTT+GGG | + | chr3.2:69654271-69654290 | None:intergenic | 15.0% |
| !!! | TACCAAAAAAAACATATTTT+GGG | + | chr3.2:69653481-69653500 | None:intergenic | 15.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr3.2:69653323-69653342 | MS.gene25886:intron | 20.0% |
| !! | AATCCTTAAAAAAAAACTTG+AGG | + | chr3.2:69653138-69653157 | None:intergenic | 20.0% |
| !! | ACATTATAATAACTGAATTG+CGG | - | chr3.2:69653106-69653125 | MS.gene25886:intron | 20.0% |
| !! | ATTATTAAATTCAAAGAAGG+CGG | + | chr3.2:69653937-69653956 | None:intergenic | 20.0% |
| !! | TAACTTAAGTAAAACTCATT+TGG | - | chr3.2:69654807-69654826 | MS.gene25886:CDS | 20.0% |
| !! | TAATATTGCAATTACTAGTA+AGG | - | chr3.2:69654189-69654208 | MS.gene25886:intron | 20.0% |
| !! | TATGTAAATTTACATGAACT+TGG | - | chr3.2:69654412-69654431 | MS.gene25886:intron | 20.0% |
| !! | TTGATGGAAAATTCTATATT+TGG | + | chr3.2:69654984-69655003 | None:intergenic | 20.0% |
| !!! | AAACAACACTAATTTTGAAA+CGG | - | chr3.2:69653416-69653435 | MS.gene25886:intron | 20.0% |
| !!! | ATCCCAAAATATGTTTTTTT+TGG | - | chr3.2:69653476-69653495 | MS.gene25886:intron | 20.0% |
| !!! | ATTTATTTGTTGAATGGTAA+AGG | + | chr3.2:69654228-69654247 | None:intergenic | 20.0% |
| !!! | CTACCAAAAAAAACATATTT+TGG | + | chr3.2:69653482-69653501 | None:intergenic | 20.0% |
| !!! | GCAAGTTTTTTTTTTTTTGA+AGG | - | chr3.2:69654885-69654904 | MS.gene25886:CDS | 20.0% |
| !!! | GGTGTTACAATTATTTATTT+TGG | + | chr3.2:69654272-69654291 | None:intergenic | 20.0% |
| !!! | TTGCAAATTTATTTGTTGAA+TGG | + | chr3.2:69654234-69654253 | None:intergenic | 20.0% |
| !!! | TTTATTTGTTGAATGGTAAA+GGG | + | chr3.2:69654227-69654246 | None:intergenic | 20.0% |
| ! | AAATTTGCAATAAGTGATGT+AGG | - | chr3.2:69654244-69654263 | MS.gene25886:intron | 25.0% |
| ! | ACAAATTAAGGTGAACAATT+TGG | + | chr3.2:69654299-69654318 | None:intergenic | 25.0% |
| ! | ACTTTAGTACTATATGTTGA+TGG | + | chr3.2:69655000-69655019 | None:intergenic | 25.0% |
| ! | AGAAACAGTTATTATTGCAT+TGG | + | chr3.2:69653246-69653265 | None:intergenic | 25.0% |
| ! | ATAATTAACGATGAGTTAAG+AGG | - | chr3.2:69653045-69653064 | MS.gene25886:CDS | 25.0% |
| ! | CAATAATAGACCATAATCAT+TGG | + | chr3.2:69653666-69653685 | None:intergenic | 25.0% |
| ! | CATGCACATAAAAGTTAATA+AGG | + | chr3.2:69654932-69654951 | None:intergenic | 25.0% |
| ! | GAACAATTAATAACAGACAT+GGG | + | chr3.2:69654113-69654132 | None:intergenic | 25.0% |
| ! | TAACTTATGGAAAACTTACT+TGG | + | chr3.2:69654564-69654583 | None:intergenic | 25.0% |
| ! | TAATTAACGATGAGTTAAGA+GGG | - | chr3.2:69653046-69653065 | MS.gene25886:CDS | 25.0% |
| ! | TAATTGCAATATTATTGCTG+TGG | + | chr3.2:69654183-69654202 | None:intergenic | 25.0% |
| ! | TGAACAATTAATAACAGACA+TGG | + | chr3.2:69654114-69654133 | None:intergenic | 25.0% |
| !! | CTTATTAACTTTTATGTGCA+TGG | - | chr3.2:69654930-69654949 | MS.gene25886:CDS | 25.0% |
| !!! | CATCCTCAAGTTTTTTTTTA+AGG | - | chr3.2:69653132-69653151 | MS.gene25886:intron | 25.0% |
| !!! | TGTATTTTTCAAAATTGTGC+AGG | - | chr3.2:69655030-69655049 | MS.gene25886:CDS | 25.0% |
| AAACAAAGGTAACACTATGT+TGG | + | chr3.2:69653751-69653770 | None:intergenic | 30.0% | |
| AACAGCTTACACAAACAAAT+AGG | + | chr3.2:69652682-69652701 | None:intergenic | 30.0% | |
| ACAGCTTACACAAACAAATA+GGG | + | chr3.2:69652681-69652700 | None:intergenic | 30.0% | |
| ATTGCAATTACTAGTAAGGT+AGG | - | chr3.2:69654193-69654212 | MS.gene25886:intron | 30.0% | |
| ATTTGTTTGTGTAAGCTGTT+AGG | - | chr3.2:69652682-69652701 | MS.gene25886:intron | 30.0% | |
| TATATATGTGTCACAGCTAT+TGG | - | chr3.2:69654492-69654511 | MS.gene25886:intron | 30.0% | |
| TCGTTAATTATCTCTCATCT+AGG | + | chr3.2:69653036-69653055 | None:intergenic | 30.0% | |
| TGCAAAGAGTAAAGAAACAA+TGG | + | chr3.2:69652443-69652462 | None:intergenic | 30.0% | |
| TTGCAATTACTAGTAAGGTA+GGG | - | chr3.2:69654194-69654213 | MS.gene25886:intron | 30.0% | |
| ! | GTAGTGTGCAAAGTATTAAT+TGG | + | chr3.2:69653284-69653303 | None:intergenic | 30.0% |
| ! | TGTGCAAAGTATTAATTGGA+GGG | + | chr3.2:69653280-69653299 | None:intergenic | 30.0% |
| !! | AATAAGGAGAGTACTAAACT+TGG | + | chr3.2:69654916-69654935 | None:intergenic | 30.0% |
| !!! | AACACTAATTTTGAAACGGA+GGG | - | chr3.2:69653420-69653439 | MS.gene25886:intron | 30.0% |
| AAAAATGAAAGTCAGTGCAG+AGG | + | chr3.2:69655106-69655125 | None:intergenic | 35.0% | |
| AAGAGTGGCATGACAAATTA+AGG | + | chr3.2:69654311-69654330 | None:intergenic | 35.0% | |
| AAGTTGACAAAACCAGACAA+AGG | - | chr3.2:69652619-69652638 | MS.gene25886:intron | 35.0% | |
| AATTCCATTACACATGGTGA+TGG | + | chr3.2:69653881-69653900 | None:intergenic | 35.0% | |
| CTTAAGCTTCCAACTATTTG+TGG | - | chr3.2:69652754-69652773 | MS.gene25886:intron | 35.0% | |
| CTTCTTAGGTTTAGGTATGT+TGG | + | chr3.2:69653715-69653734 | None:intergenic | 35.0% | |
| GAAATTACCTTGATCATCTG+TGG | - | chr3.2:69654640-69654659 | MS.gene25886:intron | 35.0% | |
| GAACTATCAGATGAAGTTGA+AGG | + | chr3.2:69654736-69654755 | None:intergenic | 35.0% | |
| GTAACTTTGTCTCTCTTCTT+AGG | + | chr3.2:69653729-69653748 | None:intergenic | 35.0% | |
| GTAGTAACACCACAAATAGT+TGG | + | chr3.2:69652766-69652785 | None:intergenic | 35.0% | |
| GTCAGATTGTTTGACATTTG+TGG | - | chr3.2:69652585-69652604 | MS.gene25886:intron | 35.0% | |
| GTTTGACATTTGTGGAAGAT+GGG | - | chr3.2:69652593-69652612 | MS.gene25886:intron | 35.0% | |
| TAAGTTACCACAGATGATCA+AGG | + | chr3.2:69654650-69654669 | None:intergenic | 35.0% | |
| TCAACTTCATCTGATAGTTC+AGG | - | chr3.2:69654736-69654755 | MS.gene25886:intron | 35.0% | |
| TGCAATATTATTGCTGTGGT+TGG | + | chr3.2:69654179-69654198 | None:intergenic | 35.0% | |
| TGTTTGACATTTGTGGAAGA+TGG | - | chr3.2:69652592-69652611 | MS.gene25886:intron | 35.0% | |
| TTGTCTCTCTTCTTAGGTTT+AGG | + | chr3.2:69653723-69653742 | None:intergenic | 35.0% | |
| TTTGCATCACTCTCATTTCA+TGG | - | chr3.2:69652457-69652476 | MS.gene25886:CDS | 35.0% | |
| ! | ATCACCATGTGTAATGGAAT+TGG | - | chr3.2:69653880-69653899 | MS.gene25886:intron | 35.0% |
| ! | GTGTGCAAAGTATTAATTGG+AGG | + | chr3.2:69653281-69653300 | None:intergenic | 35.0% |
| ! | TAAGGTGAACAATTTGGAGT+TGG | + | chr3.2:69654293-69654312 | None:intergenic | 35.0% |
| ! | TGTGGTTGGCTAACTAAATA+TGG | + | chr3.2:69654165-69654184 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr3.2:69653180-69653199 | None:intergenic | 35.0% |
| !!! | CAACACTAATTTTGAAACGG+AGG | - | chr3.2:69653419-69653438 | MS.gene25886:intron | 35.0% |
| AGATGAAGTTGAAGGACTTG+GGG | + | chr3.2:69654728-69654747 | None:intergenic | 40.0% | |
| CAGATGAAGTTGAAGGACTT+GGG | + | chr3.2:69654729-69654748 | None:intergenic | 40.0% | |
| CTAGCCAATTCCATTACACA+TGG | + | chr3.2:69653887-69653906 | None:intergenic | 40.0% | |
| GATATGGCAATGTCACCAAA+AGG | - | chr3.2:69654697-69654716 | MS.gene25886:intron | 40.0% | |
| TCACTCTCATTTCATGGAGA+TGG | - | chr3.2:69652463-69652482 | MS.gene25886:CDS | 40.0% | |
| TCAGATGAAGTTGAAGGACT+TGG | + | chr3.2:69654730-69654749 | None:intergenic | 40.0% | |
| TGTTTGTGTAAGCTGTTAGG+TGG | - | chr3.2:69652685-69652704 | MS.gene25886:intron | 40.0% | |
| TTACCTGAACAAGCACTAAC+AGG | + | chr3.2:69652793-69652812 | None:intergenic | 40.0% | |
| ! | CTCCAATTTTGCTTCCAGAA+GGG | + | chr3.2:69655065-69655084 | None:intergenic | 40.0% |
| ! | GCTAACTAAATATGGTGGAG+AGG | + | chr3.2:69654157-69654176 | None:intergenic | 40.0% |
| ! | GGTTGGCTAACTAAATATGG+TGG | + | chr3.2:69654162-69654181 | None:intergenic | 40.0% |
| !! | GGTAATGCTGCTGATTCTAT+TGG | - | chr3.2:69652706-69652725 | MS.gene25886:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+TGG | + | chr3.2:69653176-69653195 | None:intergenic | 40.0% |
| ATAGCATCTCCACTCAGTGA+TGG | + | chr3.2:69654537-69654556 | None:intergenic | 45.0% | |
| ATCAAGCATCCATCATCTGC+CGG | + | chr3.2:69652550-69652569 | None:intergenic | 45.0% | |
| CAGTCCATCACCATGTGTAA+TGG | - | chr3.2:69653874-69653893 | MS.gene25886:intron | 45.0% | |
| GAAGGCGGTATCAACAAAGA+AGG | + | chr3.2:69653922-69653941 | None:intergenic | 45.0% | |
| GAATATGGAGACAGAGACAG+TGG | + | chr3.2:69655136-69655155 | None:intergenic | 45.0% | |
| GATGTTGTCCTGAGTTAGCA+GGG | - | chr3.2:69652641-69652660 | MS.gene25886:intron | 45.0% | |
| TCAATCAACCCTGCTAACTC+AGG | + | chr3.2:69652652-69652671 | None:intergenic | 45.0% | |
| TCAGGACAACATCCTTTGTC+TGG | + | chr3.2:69652634-69652653 | None:intergenic | 45.0% | |
| ! | AGCCCTTCTGGAAGCAAAAT+TGG | - | chr3.2:69655060-69655079 | MS.gene25886:CDS | 45.0% |
| ! | CCTCCAATTTTGCTTCCAGA+AGG | + | chr3.2:69655066-69655085 | None:intergenic | 45.0% |
| ! | CCTTCTGGAAGCAAAATTGG+AGG | - | chr3.2:69655063-69655082 | MS.gene25886:CDS | 45.0% |
| ! | GAGTTAGCAGGGTTGATTGA+TGG | - | chr3.2:69652652-69652671 | MS.gene25886:intron | 45.0% |
| !! | ACATGGTGATGGACTGACAT+TGG | + | chr3.2:69653870-69653889 | None:intergenic | 45.0% |
| !! | AAAACTTAAAAATAATAATT+TGG | - | chr3.2:69653611-69653630 | MS.gene25886:intron | 5.0% |
| CCTCCTGTTAGTGCTTGTTC+AGG | - | chr3.2:69652787-69652806 | MS.gene25886:intron | 50.0% | |
| CCTGAACAAGCACTAACAGG+AGG | + | chr3.2:69652790-69652809 | None:intergenic | 50.0% | |
| GGATGTTGTCCTGAGTTAGC+AGG | - | chr3.2:69652640-69652659 | MS.gene25886:intron | 50.0% | |
| TGCAGAGGCTTGAATGCTTG+AGG | + | chr3.2:69655091-69655110 | None:intergenic | 50.0% | |
| ! | GGACTTGGGGCTAATCCTTT+TGG | + | chr3.2:69654715-69654734 | None:intergenic | 50.0% |
| ! | TGGAGTATCTGCTGCTGCTT+TGG | - | chr3.2:69652483-69652502 | MS.gene25886:CDS | 50.0% |
| !! | GGCAGATGATGGATGCTTGA+TGG | - | chr3.2:69652549-69652568 | MS.gene25886:intron | 50.0% |
| !! | TGCTGCTTTGGCTCAATCAC+CGG | - | chr3.2:69652495-69652514 | MS.gene25886:CDS | 50.0% |
| CATCCATCATCTGCCGGTGA+TGG | + | chr3.2:69652544-69652563 | None:intergenic | 55.0% | |
| GCAGGTGTTCTTAGCCCTTC+TGG | - | chr3.2:69655048-69655067 | MS.gene25886:CDS | 55.0% | |
| GCATCTCCACTCAGTGATGG+AGG | + | chr3.2:69654534-69654553 | None:intergenic | 55.0% | |
| GGAGACAGAGACAGTGGACA+GGG | + | chr3.2:69655130-69655149 | None:intergenic | 55.0% | |
| TCCTTGCCTCCATCACTGAG+TGG | - | chr3.2:69654525-69654544 | MS.gene25886:intron | 55.0% | |
| TGGAGACAGAGACAGTGGAC+AGG | + | chr3.2:69655131-69655150 | None:intergenic | 55.0% | |
| ! | AGTGATGGAGGCAAGGACAC+AGG | + | chr3.2:69654522-69654541 | None:intergenic | 55.0% |
| ! | TCCACTCAGTGATGGAGGCA+AGG | + | chr3.2:69654529-69654548 | None:intergenic | 55.0% |
| ! | TTTGGCTCAATCACCGGCAC+CGG | - | chr3.2:69652501-69652520 | MS.gene25886:CDS | 55.0% |
| AAAACCGCGGTTTCCGGTGC+CGG | + | chr3.2:69652517-69652536 | None:intergenic | 60.0% | |
| GGCGCTAAAACCGCGGTTTC+CGG | + | chr3.2:69652523-69652542 | None:intergenic | 60.0% | |
| ! | CGGTGATGGCGCTAAAACCG+CGG | + | chr3.2:69652530-69652549 | None:intergenic | 60.0% |
| !! | CGCGGTTTTAGCGCCATCAC+CGG | - | chr3.2:69652528-69652547 | MS.gene25886:intron | 60.0% |
| GCGCCATCACCGGCAGATGA+TGG | - | chr3.2:69652538-69652557 | MS.gene25886:intron | 65.0% | |
| ! | ATCACCGGCACCGGAAACCG+CGG | - | chr3.2:69652510-69652529 | MS.gene25886:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 69652415 | 69655161 | 69652415 | ID=MS.gene25886 |
| chr3.2 | mRNA | 69652415 | 69655161 | 69652415 | ID=MS.gene25886.t1;Parent=MS.gene25886 |
| chr3.2 | exon | 69654768 | 69655161 | 69654768 | ID=MS.gene25886.t1.exon1;Parent=MS.gene25886.t1 |
| chr3.2 | CDS | 69654768 | 69655161 | 69654768 | ID=cds.MS.gene25886.t1;Parent=MS.gene25886.t1 |
| chr3.2 | exon | 69653012 | 69653068 | 69653012 | ID=MS.gene25886.t1.exon2;Parent=MS.gene25886.t1 |
| chr3.2 | CDS | 69653012 | 69653068 | 69653012 | ID=cds.MS.gene25886.t1;Parent=MS.gene25886.t1 |
| chr3.2 | exon | 69652819 | 69652878 | 69652819 | ID=MS.gene25886.t1.exon3;Parent=MS.gene25886.t1 |
| chr3.2 | CDS | 69652819 | 69652878 | 69652819 | ID=cds.MS.gene25886.t1;Parent=MS.gene25886.t1 |
| chr3.2 | exon | 69652415 | 69652524 | 69652415 | ID=MS.gene25886.t1.exon4;Parent=MS.gene25886.t1 |
| chr3.2 | CDS | 69652415 | 69652524 | 69652415 | ID=cds.MS.gene25886.t1;Parent=MS.gene25886.t1 |
| Gene Sequence |
| Protein sequence |
