AlfalfaGEDB | MS.gene060356

M. sativa cultivar XinJiangDaYe / MS.gene060356

KEGG: K01662
GO: GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008661 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016744 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901576
PFAM: PF02779.27 PF02780.23 PF13292.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060356.t1	XP_003609567.1	98.6	717	10	0	1	717	1	717	0.00E+00	1422.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060356.t1	O78328	85.1	725	94	4	1	717	1	719	0.0e+00	1241.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060356.t1	G7JJ14	98.6	717	10	0	1	717	1	717	0.0e+00	1422.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049285	MS.gene060356	0.80252	5.40E-49	-1.69E-46
MS.gene049614	MS.gene060356	0.802009	6.87E-49	-1.69E-46
MS.gene049828	MS.gene060356	0.844359	7.94E-59	-1.69E-46
MS.gene049907	MS.gene060356	0.884804	1.40E-71	-1.69E-46
MS.gene050163	MS.gene060356	0.806959	6.38E-50	-1.69E-46
MS.gene050432	MS.gene060356	0.803867	2.84E-49	-1.69E-46
MS.gene050499	MS.gene060356	0.80432	2.29E-49	-1.69E-46
MS.gene050520	MS.gene060356	0.862209	5.96E-64	-1.69E-46
MS.gene050581	MS.gene060356	0.845741	3.36E-59	-1.69E-46
MS.gene050767	MS.gene060356	0.82846	8.88E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060356.t1	MTR_4g118640	98.605	717	10	0	1	717	1	717	0.0	1463
MS.gene060356.t1	MTR_4g118640	97.926	675	14	0	1	675	1	675	0.0	1367
MS.gene060356.t1	MTR_4g118640	92.329	717	10	1	1	717	1	672	0.0	1352
MS.gene060356.t1	MTR_2g020590	80.484	702	130	2	16	717	21	715	0.0	1157
MS.gene060356.t1	MTR_8g068300	71.736	651	184	0	63	713	58	708	0.0	1009
MS.gene060356.t1	MTR_8g068265	68.383	699	206	2	29	713	11	708	0.0	1009
MS.gene060356.t1	MTR_3g107740	60.522	689	262	5	29	716	27	706	0.0	830
MS.gene060356.t1	MTR_3g107740	57.117	555	228	5	29	582	27	572	0.0	627
MS.gene060356.t1	MTR_7g005380	25.091	275	186	7	387	644	19	290	7.77e-11	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060356.t1	AT4G15560	86.222	675	86	1	39	713	49	716	0.0	1215
MS.gene060356.t1	AT3G21500	74.194	713	133	4	1	713	13	674	0.0	1074
MS.gene060356.t1	AT3G21500	74.251	668	121	4	1	668	13	629	0.0	1003
MS.gene060356.t1	AT3G21500	74.102	668	121	5	1	668	13	628	0.0	996
MS.gene060356.t1	AT5G11380	56.369	683	271	8	37	717	43	700	0.0	762
MS.gene060356.t1	AT5G11380	52.930	546	230	8	37	580	43	563	0.0	561
MS.gene060356.t1	AT5G11380	54.080	527	216	7	37	561	43	545	0.0	557
MS.gene060356.t1	AT5G11380	54.175	515	210	7	37	549	43	533	0.0	541
MS.gene060356.t1	AT5G50850	25.088	283	192	7	379	644	19	298	7.48e-12	68.2

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Find 169 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTCCTACAGGTGGTAT+AGG	0.493402	8.4:+12873232	None:intergenic
AAAGGTAGGATACTAATTGA+AGG	0.544500	8.4:-12871277	MS.gene060356:CDS
AAAGTTGACGAGTATGCTCG+TGG	0.686551	8.4:-12873021	MS.gene060356:CDS
AACATGGATCAATACAGGAC+CGG	0.598177	8.4:+12872873	None:intergenic
AACCAATAGGAATGGCTGTT+GGG	0.466377	8.4:-12873426	MS.gene060356:intron
AACTATGCAGTGGAGGCCGG+TGG	0.646065	8.4:-12870912	MS.gene060356:intron
AAGAGGAATGCCTTTGTACT+CGG	0.521348	8.4:+12871668	None:intergenic
AATGATGTAGTTGCTGTTAT+TGG	0.259454	8.4:-12873382	MS.gene060356:CDS
ACAAACAAGAGAGGCATTAG+AGG	0.503095	8.4:-12870786	MS.gene060356:CDS
ACAACTCGGTCGATCGTCGA+TGG	0.606839	8.4:+12871734	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGTAGGATACTAATTGA+AGG	-	chr8.4:12874166-12874185	MS.gene060356:CDS	30.0%
ATACTCATCATTCTTGCAAA+GGG	-	chr8.4:12873070-12873089	MS.gene060356:intron	30.0%
ATATTGCACAAAAAGGCTTA+AGG	+	chr8.4:12873052-12873071	None:intergenic	30.0%
ATCACATCATTGAACTAGAA+AGG	+	chr8.4:12871962-12871981	None:intergenic	30.0%
ATTCAATATGCTTCTAGTGA+TGG	+	chr8.4:12872688-12872707	None:intergenic	30.0%
GATAATATCTTTGTCAGCTT+TGG	+	chr8.4:12872898-12872917	None:intergenic	30.0%
GATGAGTATATTGCACAAAA+AGG	+	chr8.4:12873059-12873078	None:intergenic	30.0%
GTCAAAACTACTAATAGTAC+CGG	-	chr8.4:12872551-12872570	MS.gene060356:CDS	30.0%
TAATTCTTCTCTCTACTATC+TGG	-	chr8.4:12871684-12871703	MS.gene060356:CDS	30.0%
TACAAGAGGATATGTATGTA+TGG	+	chr8.4:12873824-12873843	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	12870775	12874690	12870775	ID=MS.gene060356
chr8.4	mRNA	12870775	12874690	12870775	ID=MS.gene060356.t1;Parent=MS.gene060356
chr8.4	exon	12874424	12874690	12874424	ID=MS.gene060356.t1.exon1;Parent=MS.gene060356.t1
chr8.4	CDS	12874424	12874690	12874424	ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4	exon	12874042	12874206	12874042	ID=MS.gene060356.t1.exon2;Parent=MS.gene060356.t1
chr8.4	CDS	12874042	12874206	12874042	ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4	exon	12873783	12873933	12873783	ID=MS.gene060356.t1.exon3;Parent=MS.gene060356.t1
chr8.4	CDS	12873783	12873933	12873783	ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4	exon	12873168	12873439	12873168	ID=MS.gene060356.t1.exon4;Parent=MS.gene060356.t1
chr8.4	CDS	12873168	12873439	12873168	ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4	exon	12872815	12873088	12872815	ID=MS.gene060356.t1.exon5;Parent=MS.gene060356.t1
chr8.4	CDS	12872815	12873088	12872815	ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4	exon	12872362	12872669	12872362	ID=MS.gene060356.t1.exon6;Parent=MS.gene060356.t1
chr8.4	CDS	12872362	12872669	12872362	ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4	exon	12871665	12871946	12871665	ID=MS.gene060356.t1.exon7;Parent=MS.gene060356.t1
chr8.4	CDS	12871665	12871946	12871665	ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4	exon	12871021	12871305	12871021	ID=MS.gene060356.t1.exon8;Parent=MS.gene060356.t1
chr8.4	CDS	12871021	12871305	12871021	ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4	exon	12870775	12870924	12870775	ID=MS.gene060356.t1.exon9;Parent=MS.gene060356.t1
chr8.4	CDS	12870775	12870924	12870775	ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1

Gene Sequence

>MS.gene060356

ATGGATCTCTGTTCATTAGCATGTCCTTCTTTTGTAACACCTTGTGATCCCAGAAGAACACTTCTTCTTCCTTCTTCTTCTTCTTCTCACTCTCAATGGGGTCTTCATTTCTTCTCTCACTCTCAACAACACAACAAACTCAAGAAAAAGATTGGTGTTGTTCATGCTTCACTTTCTGAGATGGGAGAATATTATTCTCAAAGACCTCCTACTCCATTACTTGACACTATTAACTACCCGATCCACATGAAAAATCTCTCCACCAAGGTACTACTTCACTCATAAATCACACTCCTCCGGTTCATATATAAGAGACAATTGAGTCAACAAAAGTTGATGTATCTGGTCGAGATACATCATTTGACCAGATACATCGACTTTTGTTGACTTAATTTTCTCTACGAAGGGAGTATACTATAGTTGCTTATGTTGTTTCTGAATGTCATTGGTTTTAATTACTATAATTTTTGAATGATTGATACAGGAGCTGAAACAGCTTGCGGATGAACTACGTTCTGATGTTATTTTCAGTGTTTCAAGAACTGGGGGACATTTAGGTTCAAGTTTAGGTGTTGTTGAACTCACTATTGCTCTTCACTATGTTTTTAATACACCTCAGGATAAGATTTTGTGGGATGTTGGTCACCAGGTGGGTTGGTGTTATGTTGTTTATGTTTGTTGAGGATGAAATTTTGTTTGATACCTGTTGTGAATTGAAATCTTATGTTTTGCTTTTTTTTTTTTTTTTTTTTTGCAGTCATATCCTCATAAAATACTTACTGGTAGAAGGGATAAGATGCATACCATGAGACAGACTAATGGGTTATCTGGATTTACAAAACGTTCTGAGAGTGAATATGATTCTTTTGGCACTGGTCATAGTTCAACTACTATTTCAGCTGGACTTGGTAATTCTTCTCTCTACTATCTGGCTCTTAAAACTATGTAGCACCGACACTTCATTTTGAAGACGTGAGCACTGACATGACATCTATAAATGTATTACATTTAGTTATTTAGTTCTTCCAATTTTTTCAAATTAATATCGGTGTTAACGTGTCAGTCTCAGTTTCGTGTCTGGTGTTTGAGTCAGTGCTTCATAGTTTAAGACAAATGATTTTTCAGTCAACATATGATATTTACATGAATGAATAATGGAATTGAAAGATGGTGTGTAAGCTTGTCCTTTCTAGTTCAATGATGTGATATTTTGATTTGGATTTAACTTTGGCAATTGTATTGAACCAATAGGAATGGCTGTTGGGAGAGATCTGAAGGGAAGAAAGAATGATGTAGTTGCTGTTATTGGTGATGGTGCTATGACAGCGGGTCAAGCTTATGAAGCTATGAACAATGCTGGATATCTTGATTCTGATATGATTGTAATTTTGAATGACAACAAACAAGTTTCTTTACCAACTGCTACTCTTGATGGACCTATACCACCTGTAGGAGCTTTGAGTAGTGCTCTAAGTAGGTTACAATCAAACAAACCTCTTAGAGAATTGAGAGAGGTTGCAAAGGTGAGTAATAATACACTTAATGAGTTATCTCAAGACCATCCATTTGAAGCTTCTTCTTGACAAAATGATATTTTTATAGGGAGTAACAAAACGAATTGGAGGTCCTATGCATGAATTGGCTGCGAAAGTTGACGAGTATGCTCGTGGTATGATCAGTGGTACTGGATCAACACTTTTTGAAGAGCTTGGACTCTACTATATCGGTCCTGTTGATGGTCATAACATAGATGATCTAGTTGCCATTCTCAAAGAAGTCAAAACTACTAATAGTACCGGTCCTGTATTGATCCATGTTATCACCGAAAAAGGCCGCGGATATCCATACGCAGAGCAAGCCGCTGACAAGTATCATGGTAATGGACCTTATATATTTTGAACAATTACTATCCATCACTAGAAGCATATTGAATAATCTCAAACTAAGATCTATCTGTCTAGCGACATATATGCTTTGACTTGCTGCATTCCTCACAGATATGAGTTGGTTTGATTTTCCAGGAGTTACCAAGTTTGATCCACCAACTGGAAAGCAATTCAAAGCAACGGCTAAAACGCAGTCTTACACAACATACTTTGCAGAGGCTTTGATTGCAGAAGCCAAAGCTGACAAAGATATTATCGCAATACATGCTGCGATGGGAGGTGGAACTGGCATGAATCTCTTCCATCGCCGATTCCCAACAAGATGCTTTGACGTGGGGATAGCAGAACAGCATGCCGTTACATTTGCTGCAGGTCTAGCTTGTGAAGGCCTTAAGCCTTTTTGTGCAATATACTCATCATTCTTGCAAAGGGCCTATGACCAGGTAGAATAACAACTTCTCTCCCATCATATGAAAAAAGTTATACAGTATGATATCTATACTTTTGAGGTATGCTTGGGTGGAGGGTTTTTGAGGGCTAAGTCTATTAGGTAATAAATTTGAGATTTTAAATTTTTTGAAAGAATACCAAGACACATGATCAATTAATATTACAATCGCAATTCATCATTTGAAACATTTTATAGCTTCCTTAATTTAAATAATTAAAATAAGAACTTATCTGTTCTCTCCCAACATTTTGAAAAATTTATGCGGTGTGAATCGAGAAGTTCATATTTTGAAGTTTGAAATCAAGTACAGGAACTAAAAATCCTCGTTTAATCGAAATCATTGCACAAATATGAACTTGAAAATTGAAACTAGTGCTCAAAGTATGAATTTCATGTCCATACCACAGGTGGTACATGATGTGGATTTGCAAAAGCTTCCTGTAAGATTTGCAATGGACAGAGCTGGATTAGTTGGATCAGATGGTCCTACACATTGTGGTTCTTTTGACGTCACTTTTATGGCATGCCTCCCCAACATGGTGGTGATGGCTCCTTCTGATGAAGCAGAGCTTTGTCACATGGTTGCCACTGCAGCAGCCATCGACGATCGACCGAGTTGTTTCCGATACCCGAGGGGAAATGGCATTGGTGTTGAACTTCCAGCCGAGTACAAAGGCATTCCTCTTGAGGTAAAATTAAAATTATTTCTCCATACATACATATCCTCTTGTAGAATTTTAGGCATAACATTACAAATTACTAAATATGTTTTTAGTCCCTATAAAATTCACATATTTTCAAGTTTTTCCCTACATAAATTTTGTTCAATTTTAGTCTTTAATTTGCTTTTATTGATACCAAGTACAGGGACTAAAAATCCTCATTTATCGTGAAGTTTTATAAAAGTAGGGACTAAGTTGATCAAATTTATGTAGGGACTAATTACTAAACATAAAAAGTCATAATTTTGTACTGACTAAAAATATATTCAACTGGTCCTATGAGTTATGACAGATGGCTTGACATTTGTGTTCTGATATTTTAACAGATTGGGAAAGGTAGGATACTAATTGAAGGAGAAAGAGTAGCCCTATTGGGCTACGGGTCAGCCGTTCAGAACTGTTTGGCTGCGGCTTCCTTAGTTGAACAACATGGCTTGCGCTTAACTGTTGCCGATGCACGTTTCTGCAAGCCATTGGATCGATCCTTGATTCGCAGTCTGGCAAAATCACATGAGGTTCTGATCACCGTAGAAGAAGGATCAATTGGAGGATTTGGTTCTCATGTTGCTCAGTTCATGGCCCTTGATGGTCTTTTAGATGGAAATTTGAAGGTAAGAAAGTAAACAAGTCCCTTTTCAATGTAAACATTAAATACTACTAGTTGCCAATTCAAAACTCATGCTTTGATTTACATGACAACTATGCAGTGGAGGCCGGTGGTTCTTCCCGACCGATATATTGACCATGGATCACCTGCTGACCAATTGTCAATGGCTGGTCTTACACCCTCTCACATAGCAGCAACAGTGTTCAACATACTTGGACAAACAAGAGAGGCATTAGAGGTCATGTCATAA

Protein sequence

>MS.gene060356.t1

MDLCSLACPSFVTPCDPRRTLLLPSSSSSHSQWGLHFFSHSQQHNKLKKKIGVVHASLSEMGEYYSQRPPTPLLDTINYPIHMKNLSTKELKQLADELRSDVIFSVSRTGGHLGSSLGVVELTIALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMHTMRQTNGLSGFTKRSESEYDSFGTGHSSTTISAGLGMAVGRDLKGRKNDVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNKPLRELREVAKGVTKRIGGPMHELAAKVDEYARGMISGTGSTLFEELGLYYIGPVDGHNIDDLVAILKEVKTTNSTGPVLIHVITEKGRGYPYAEQAADKYHGVTKFDPPTGKQFKATAKTQSYTTYFAEALIAEAKADKDIIAIHAAMGGGTGMNLFHRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRAYDQVVHDVDLQKLPVRFAMDRAGLVGSDGPTHCGSFDVTFMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSCFRYPRGNGIGVELPAEYKGIPLEIGKGRILIEGERVALLGYGSAVQNCLAAASLVEQHGLRLTVADARFCKPLDRSLIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGNLKWRPVVLPDRYIDHGSPADQLSMAGLTPSHIAATVFNILGQTREALEVMS