AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060356


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060356.t1 MTR_4g118640 98.605 717 10 0 1 717 1 717 0.0 1463
MS.gene060356.t1 MTR_4g118640 97.926 675 14 0 1 675 1 675 0.0 1367
MS.gene060356.t1 MTR_4g118640 92.329 717 10 1 1 717 1 672 0.0 1352
MS.gene060356.t1 MTR_2g020590 80.484 702 130 2 16 717 21 715 0.0 1157
MS.gene060356.t1 MTR_8g068300 71.736 651 184 0 63 713 58 708 0.0 1009
MS.gene060356.t1 MTR_8g068265 68.383 699 206 2 29 713 11 708 0.0 1009
MS.gene060356.t1 MTR_3g107740 60.522 689 262 5 29 716 27 706 0.0 830
MS.gene060356.t1 MTR_3g107740 57.117 555 228 5 29 582 27 572 0.0 627
MS.gene060356.t1 MTR_7g005380 25.091 275 186 7 387 644 19 290 7.77e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060356.t1 AT4G15560 86.222 675 86 1 39 713 49 716 0.0 1215
MS.gene060356.t1 AT3G21500 74.194 713 133 4 1 713 13 674 0.0 1074
MS.gene060356.t1 AT3G21500 74.251 668 121 4 1 668 13 629 0.0 1003
MS.gene060356.t1 AT3G21500 74.102 668 121 5 1 668 13 628 0.0 996
MS.gene060356.t1 AT5G11380 56.369 683 271 8 37 717 43 700 0.0 762
MS.gene060356.t1 AT5G11380 52.930 546 230 8 37 580 43 563 0.0 561
MS.gene060356.t1 AT5G11380 54.080 527 216 7 37 561 43 545 0.0 557
MS.gene060356.t1 AT5G11380 54.175 515 210 7 37 549 43 533 0.0 541
MS.gene060356.t1 AT5G50850 25.088 283 192 7 379 644 19 298 7.48e-12 68.2

Find 169 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGATCAATTGGAGGATT+TGG 0.241782 8.4:-12871076 MS.gene060356:CDS
AATGATGTAGTTGCTGTTAT+TGG 0.259454 8.4:-12873382 MS.gene060356:CDS
TTCTCATGTTGCTCAGTTCA+TGG 0.260981 8.4:-12871053 MS.gene060356:CDS
AGGAAGAAGAAGTGTTCTTC+TGG 0.261298 8.4:+12874619 None:intergenic
ATCCATGTTATCACCGAAAA+AGG 0.271169 8.4:-12872859 MS.gene060356:CDS
TTACCAACTGCTACTCTTGA+TGG 0.271724 8.4:-12873256 MS.gene060356:CDS
CTTCTTCTTCTCACTCTCAA+TGG 0.274761 8.4:-12874592 MS.gene060356:CDS
ATAAAATACTTACTGGTAGA+AGG 0.289805 8.4:-12873901 MS.gene060356:CDS
GAGAGTGAATATGATTCTTT+TGG 0.294675 8.4:-12873821 MS.gene060356:CDS
CTGTCCATTGCAAATCTTAC+AGG 0.302421 8.4:+12871894 None:intergenic
TTCTTCTTCTCACTCTCAAT+GGG 0.302828 8.4:-12874591 MS.gene060356:CDS
CGGCTGACCCGTAGCCCAAT+AGG 0.305029 8.4:+12871242 None:intergenic
GCTCAGTTCATGGCCCTTGA+TGG 0.326804 8.4:-12871043 MS.gene060356:CDS
GGACATTTAGGTTCAAGTTT+AGG 0.343066 8.4:-12874121 MS.gene060356:CDS
GATAATATCTTTGTCAGCTT+TGG 0.345890 8.4:+12872548 None:intergenic
TTGTTATTCTACCTGGTCAT+AGG 0.354959 8.4:+12872350 None:intergenic
AGACAGACTAATGGGTTATC+TGG 0.360543 8.4:-12873860 MS.gene060356:CDS
GATGAGTATATTGCACAAAA+AGG 0.361483 8.4:+12872387 None:intergenic
TATCCTCATAAAATACTTAC+TGG 0.370362 8.4:-12873908 MS.gene060356:CDS
GGAGCCATCACCACCATGTT+GGG 0.392304 8.4:+12871801 None:intergenic
TACTATATCGGTCCTGTTGA+TGG 0.393097 8.4:-12872952 MS.gene060356:CDS
ACCTCTCTCAATTCTCTAAG+AGG 0.402113 8.4:+12873175 None:intergenic
TTCCGATACCCGAGGGGAAA+TGG 0.408784 8.4:-12871711 MS.gene060356:CDS
AGGAGAAAGAGTAGCCCTAT+TGG 0.409345 8.4:-12871257 MS.gene060356:CDS
TAGGGAGTAACAAAACGAAT+TGG 0.410575 8.4:-12873069 MS.gene060356:CDS
TCGATCCTTGATTCGCAGTC+TGG 0.418420 8.4:-12871131 MS.gene060356:CDS
TCATGCTTCACTTTCTGAGA+TGG 0.428620 8.4:-12874507 MS.gene060356:CDS
CATGCTTCACTTTCTGAGAT+GGG 0.434339 8.4:-12874506 MS.gene060356:CDS
ACCGTAGAAGAAGGATCAAT+TGG 0.435054 8.4:-12871085 MS.gene060356:CDS
CAAAGCATCTTGTTGGGAAT+CGG 0.442480 8.4:+12872475 None:intergenic
TTTAACAGATTGGGAAAGGT+AGG 0.444040 8.4:-12871291 MS.gene060356:intron
GAGCTTGGACTCTACTATAT+CGG 0.444711 8.4:-12872964 MS.gene060356:CDS
GGAGAAAGAGTAGCCCTATT+GGG 0.447212 8.4:-12871256 MS.gene060356:CDS
CCCACGTCAAAGCATCTTGT+TGG 0.447447 8.4:+12872468 None:intergenic
TTGAATTGCTTTCCAGTTGG+TGG 0.448517 8.4:+12872630 None:intergenic
GCTGCGATGGGAGGTGGAAC+TGG 0.448982 8.4:-12872516 MS.gene060356:CDS
TCCAGTTGGTGGATCAAACT+TGG 0.452909 8.4:+12872641 None:intergenic
ATGGACAGAGCTGGATTAGT+TGG 0.453708 8.4:-12871879 MS.gene060356:CDS
TGCCATTTCCCCTCGGGTAT+CGG 0.457752 8.4:+12871709 None:intergenic
ATACCATGAGACAGACTAAT+GGG 0.461341 8.4:-12873868 MS.gene060356:CDS
ACCAAGTTTGATCCACCAAC+TGG 0.463045 8.4:-12872642 MS.gene060356:CDS
AACCAATAGGAATGGCTGTT+GGG 0.466377 8.4:-12873426 MS.gene060356:intron
GCAACAGTGTTCAACATACT+TGG 0.468649 8.4:-12870809 MS.gene060356:CDS
TGCACGTTTCTGCAAGCCAT+TGG 0.468795 8.4:-12871155 MS.gene060356:CDS
GCCATTGACAATTGGTCAGC+AGG 0.472373 8.4:+12870857 None:intergenic
TGGAGGTCCTATGCATGAAT+TGG 0.478037 8.4:-12873049 MS.gene060356:CDS
GGAAGAAGAAGTGTTCTTCT+GGG 0.482567 8.4:+12874620 None:intergenic
GTCAGCCGTTCAGAACTGTT+TGG 0.487689 8.4:-12871227 MS.gene060356:CDS
ATACATGCTGCGATGGGAGG+TGG 0.489733 8.4:-12872522 MS.gene060356:CDS
CACCAATGCCATTTCCCCTC+GGG 0.491891 8.4:+12871703 None:intergenic
TAAGACCAGCCATTGACAAT+TGG 0.492812 8.4:+12870849 None:intergenic
AAAGCTCCTACAGGTGGTAT+AGG 0.493402 8.4:+12873232 None:intergenic
CCACGTCAAAGCATCTTGTT+GGG 0.494671 8.4:+12872469 None:intergenic
CCTCCCCAACATGGTGGTGA+TGG 0.495137 8.4:-12871805 MS.gene060356:CDS
AGAATTGAGAGAGGTTGCAA+AGG 0.496003 8.4:-12873167 MS.gene060356:intron
TCAGCGGCTTGCTCTGCGTA+TGG 0.497079 8.4:+12872826 None:intergenic
ACTACTATTTCAGCTGGACT+TGG 0.499592 8.4:-12873782 MS.gene060356:intron
GTGATAACATGGATCAATAC+AGG 0.499825 8.4:+12872868 None:intergenic
TCCAATTGATCCTTCTTCTA+CGG 0.501095 8.4:+12871084 None:intergenic
CATACCATGAGACAGACTAA+TGG 0.501531 8.4:-12873869 MS.gene060356:CDS
ACAAACAAGAGAGGCATTAG+AGG 0.503095 8.4:-12870786 MS.gene060356:CDS
CGTGGTATGATCAGTGGTAC+TGG 0.504327 8.4:-12873003 MS.gene060356:CDS
ATCGTCGATGGCTGCTGCAG+TGG 0.507645 8.4:+12871746 None:intergenic
CTTTGAGTAGTGCTCTAAGT+AGG 0.507922 8.4:-12873213 MS.gene060356:CDS
GTAGTTGCTGTTATTGGTGA+TGG 0.508169 8.4:-12873376 MS.gene060356:CDS
GTGATCCATGGTCAATATAT+CGG 0.508554 8.4:+12870879 None:intergenic
ATACTCATCATTCTTGCAAA+GGG 0.512668 8.4:-12872373 MS.gene060356:CDS
GGAATGCCTTTGTACTCGGC+TGG 0.514100 8.4:+12871672 None:intergenic
TCTATGTTATGACCATCAAC+AGG 0.515677 8.4:+12872940 None:intergenic
GGCTGTTGGGAGAGATCTGA+AGG 0.516771 8.4:-12873413 MS.gene060356:CDS
GAGTAGCCCTATTGGGCTAC+GGG 0.519027 8.4:-12871249 MS.gene060356:CDS
CAAGCCATGTTGTTCAACTA+AGG 0.519980 8.4:+12871195 None:intergenic
AAGAGGAATGCCTTTGTACT+CGG 0.521348 8.4:+12871668 None:intergenic
GACAACTATGCAGTGGAGGC+CGG 0.522608 8.4:-12870915 MS.gene060356:intron
CTTGCAAAGGGCCTATGACC+AGG 0.524812 8.4:-12872361 MS.gene060356:intron
AGATTTGCAATGGACAGAGC+TGG 0.525132 8.4:-12871888 MS.gene060356:CDS
AGTTCAACTACTATTTCAGC+TGG 0.526493 8.4:-12873788 MS.gene060356:CDS
GGCTGACCCGTAGCCCAATA+GGG 0.528076 8.4:+12871243 None:intergenic
ACACCAATGCCATTTCCCCT+CGG 0.529099 8.4:+12871702 None:intergenic
TACCCGAGGGGAAATGGCAT+TGG 0.530322 8.4:-12871705 MS.gene060356:CDS
GCTGACCAATTGTCAATGGC+TGG 0.531698 8.4:-12870854 MS.gene060356:CDS
GCACTACTCAAAGCTCCTAC+AGG 0.533764 8.4:+12873223 None:intergenic
GAACCAATAGGAATGGCTGT+TGG 0.533777 8.4:-12873427 MS.gene060356:intron
CAAAGCTCTGCTTCATCAGA+AGG 0.534683 8.4:+12871780 None:intergenic
ACCTGCTGACCAATTGTCAA+TGG 0.535095 8.4:-12870858 MS.gene060356:CDS
TTCCATCTAAAAGACCATCA+AGG 0.536693 8.4:+12871029 None:intergenic
TTTGTGGGATGTTGGTCACC+AGG 0.538468 8.4:-12874041 MS.gene060356:intron
TATGAAGCTATGAACAATGC+TGG 0.538515 8.4:-12873331 MS.gene060356:CDS
GCTTCCTGTAAGATTTGCAA+TGG 0.538600 8.4:-12871898 MS.gene060356:CDS
GTCAAAACTACTAATAGTAC+CGG 0.538944 8.4:-12872892 MS.gene060356:CDS
CCATGGTCAATATATCGGTC+GGG 0.539704 8.4:+12870884 None:intergenic
TAAAATACTTACTGGTAGAA+GGG 0.540493 8.4:-12873900 MS.gene060356:CDS
AGGAGCCATCACCACCATGT+TGG 0.540606 8.4:+12871800 None:intergenic
TCACAAGGTGTTACAAAAGA+AGG 0.540930 8.4:+12874644 None:intergenic
AGAGTAGCCCTATTGGGCTA+CGG 0.541980 8.4:-12871250 MS.gene060356:CDS
GTACAAAGGCATTCCTCTTG+AGG 0.542688 8.4:-12871664 MS.gene060356:intron
TATCGCAATACATGCTGCGA+TGG 0.543634 8.4:-12872529 MS.gene060356:CDS
AAAGGTAGGATACTAATTGA+AGG 0.544500 8.4:-12871277 MS.gene060356:CDS
CATGCCGTTACATTTGCTGC+AGG 0.547176 8.4:-12872432 MS.gene060356:CDS
TGAGTGAAGTAGTACCTTGG+TGG 0.549728 8.4:+12874409 None:intergenic
CCAACAAGATGCTTTGACGT+GGG 0.550307 8.4:-12872468 MS.gene060356:CDS
CGTTCAGAACTGTTTGGCTG+CGG 0.550458 8.4:-12871221 MS.gene060356:CDS
TATACTCATCATTCTTGCAA+AGG 0.554665 8.4:-12872374 MS.gene060356:CDS
GGAGTAACAAAACGAATTGG+AGG 0.556176 8.4:-12873066 MS.gene060356:CDS
CTCGGGTATCGGAAACAACT+CGG 0.556658 8.4:+12871720 None:intergenic
GCTGCAGGTCTAGCTTGTGA+AGG 0.558594 8.4:-12872417 MS.gene060356:CDS
GTTCTGATCACCGTAGAAGA+AGG 0.565510 8.4:-12871094 MS.gene060356:CDS
GCTGGATTAGTTGGATCAGA+TGG 0.566290 8.4:-12871870 MS.gene060356:CDS
TCCATGGTCAATATATCGGT+CGG 0.567471 8.4:+12870883 None:intergenic
TCCATCTAAAAGACCATCAA+GGG 0.567878 8.4:+12871030 None:intergenic
TATGGCATGCCTCCCCAACA+TGG 0.569047 8.4:-12871814 MS.gene060356:CDS
CGAATCAAGGATCGATCCAA+TGG 0.575852 8.4:+12871139 None:intergenic
ATCTTGTTGGGAATCGGCGA+TGG 0.577057 8.4:+12872481 None:intergenic
CCCAACAAGATGCTTTGACG+TGG 0.578877 8.4:-12872469 MS.gene060356:CDS
TATCGGTCGGGAAGAACCAC+CGG 0.579648 8.4:+12870896 None:intergenic
TTCAGTGTTTCAAGAACTGG+GGG 0.580278 8.4:-12874142 MS.gene060356:CDS
ATTGGTCAGCAGGTGATCCA+TGG 0.582909 8.4:+12870867 None:intergenic
ATAGTGTCAAGTAATGGAGT+AGG 0.583027 8.4:+12874461 None:intergenic
GTGTCAAGTAATGGAGTAGG+AGG 0.583729 8.4:+12874464 None:intergenic
CACTGTTGCTGCTATGTGAG+AGG 0.583769 8.4:+12870823 None:intergenic
ATCGCAATACATGCTGCGAT+GGG 0.585240 8.4:-12872528 MS.gene060356:CDS
GCTTTGAATTGCTTTCCAGT+TGG 0.585632 8.4:+12872627 None:intergenic
TAGTTAATAGTGTCAAGTAA+TGG 0.586256 8.4:+12874455 None:intergenic
ACCACAGGTGGTACATGATG+TGG 0.589888 8.4:-12871931 MS.gene060356:intron
GTAGAAGAAGGATCAATTGG+AGG 0.595008 8.4:-12871082 MS.gene060356:CDS
AACATGGATCAATACAGGAC+CGG 0.598177 8.4:+12872873 None:intergenic
GGTGATGGTGCTATGACAGC+GGG 0.598232 8.4:-12873361 MS.gene060356:CDS
CAACAAGATGCTTTGACGTG+GGG 0.598949 8.4:-12872467 MS.gene060356:CDS
CAAGCCGCTGACAAGTATCA+TGG 0.599890 8.4:-12872814 MS.gene060356:intron
TTCGCAGCCAATTCATGCAT+AGG 0.601604 8.4:+12873042 None:intergenic
TAACCCATTAGTCTGTCTCA+TGG 0.604663 8.4:+12873865 None:intergenic
ACAACTCGGTCGATCGTCGA+TGG 0.606839 8.4:+12871734 None:intergenic
CGCAGCCAAACAGTTCTGAA+CGG 0.607768 8.4:+12871222 None:intergenic
CCCGACCGATATATTGACCA+TGG 0.612239 8.4:-12870884 MS.gene060356:CDS
GCAATACATGCTGCGATGGG+AGG 0.614477 8.4:-12872525 MS.gene060356:CDS
TTACACAACATACTTTGCAG+AGG 0.619468 8.4:-12872586 MS.gene060356:CDS
TCTTCTTCTCACTCTCAATG+GGG 0.620235 8.4:-12874590 MS.gene060356:CDS
GAGCCATCACCACCATGTTG+GGG 0.622407 8.4:+12871802 None:intergenic
TGGAAAGCAATTCAAAGCAA+CGG 0.628196 8.4:-12872622 MS.gene060356:CDS
GAACTTCCAGCCGAGTACAA+AGG 0.631347 8.4:-12871678 MS.gene060356:CDS
TGGTGATGGTGCTATGACAG+CGG 0.633316 8.4:-12873362 MS.gene060356:CDS
TTTCAGTGTTTCAAGAACTG+GGG 0.633346 8.4:-12874143 MS.gene060356:CDS
CCATCACCACCATGTTGGGG+AGG 0.634531 8.4:+12871805 None:intergenic
GAGTTGTTTCCGATACCCGA+GGG 0.637112 8.4:-12871718 MS.gene060356:CDS
AGTGTTCTTCTGGGATCACA+AGG 0.638544 8.4:+12874629 None:intergenic
TGAAGCAGAGCTTTGTCACA+TGG 0.638669 8.4:-12871772 MS.gene060356:CDS
TAGACCTGCAGCAAATGTAA+CGG 0.641986 8.4:+12872428 None:intergenic
CGAGTTGTTTCCGATACCCG+AGG 0.642120 8.4:-12871719 MS.gene060356:CDS
GCTTCCTTAGTTGAACAACA+TGG 0.642813 8.4:-12871199 MS.gene060356:CDS
TCAGATGGTCCTACACATTG+TGG 0.645337 8.4:-12871855 MS.gene060356:CDS
AACTATGCAGTGGAGGCCGG+TGG 0.646065 8.4:-12870912 MS.gene060356:intron
TCCCACAAAATCTTATCCTG+AGG 0.647268 8.4:+12874055 None:intergenic
GGTCCATCAAGAGTAGCAGT+TGG 0.647333 8.4:+12873253 None:intergenic
TGGCTTGCAGAAACGTGCAT+CGG 0.647415 8.4:+12871159 None:intergenic
TCAAAAGAACCACAATGTGT+AGG 0.648738 8.4:+12871846 None:intergenic
ACTGTTGCTGCTATGTGAGA+GGG 0.660707 8.4:+12870824 None:intergenic
CAGTCTGGCAAAATCACATG+AGG 0.662811 8.4:-12871116 MS.gene060356:CDS
GATGGACCTATACCACCTGT+AGG 0.673324 8.4:-12873238 MS.gene060356:CDS
ACAGGAGCTGAAACAGCTTG+CGG 0.674251 8.4:-12874188 MS.gene060356:intron
TATGCTCGTGGTATGATCAG+TGG 0.678017 8.4:-12873009 MS.gene060356:CDS
AAAGTTGACGAGTATGCTCG+TGG 0.686551 8.4:-12873021 MS.gene060356:CDS
ACCTCTTAGAGAATTGAGAG+AGG 0.689978 8.4:-12873176 MS.gene060356:CDS
CTACTCAAAGCTCCTACAGG+TGG 0.693731 8.4:+12873226 None:intergenic
CATACTTGGACAAACAAGAG+AGG 0.703939 8.4:-12870795 MS.gene060356:CDS
ATTACCATGATACTTGTCAG+CGG 0.708984 8.4:+12872810 None:intergenic
GCTGTTGGGAGAGATCTGAA+GGG 0.712298 8.4:-12873412 MS.gene060356:CDS
AGTTGTTTCCGATACCCGAG+GGG 0.719126 8.4:-12871717 MS.gene060356:CDS
GGCATGCCTCCCCAACATGG+TGG 0.744567 8.4:-12871811 MS.gene060356:CDS
GCTCTGCGTATGGATATCCG+CGG 0.805170 8.4:+12872836 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAATTATTTAAATTA+AGG + chr8.4:12873313-12873332 None:intergenic 0.0%
!!! CAATTTTTTCAAATTAATAT+CGG - chr8.4:12871801-12871820 MS.gene060356:CDS 10.0%
!! AAATTGAACAAAATTTATGT+AGG + chr8.4:12873923-12873942 None:intergenic 15.0%
!! AATTGAACAAAATTTATGTA+GGG + chr8.4:12873922-12873941 None:intergenic 15.0%
!! ATATTTACATGAATGAATAA+TGG - chr8.4:12871910-12871929 MS.gene060356:CDS 15.0%
!! ATTTAATGTTTACATTGAAA+AGG + chr8.4:12874467-12874486 None:intergenic 15.0%
!! GTAATTGTTCAAAATATATA+AGG + chr8.4:12872662-12872681 None:intergenic 15.0%
!! TTTAATGTTTACATTGAAAA+GGG + chr8.4:12874466-12874485 None:intergenic 15.0%
!!! AACATTTTGAAAAATTTATG+CGG - chr8.4:12873354-12873373 MS.gene060356:CDS 15.0%
!!! CATAAATTTTTCAAAATGTT+GGG + chr8.4:12873354-12873373 None:intergenic 15.0%
!!! CGATATTAATTTGAAAAAAT+TGG + chr8.4:12871803-12871822 None:intergenic 15.0%
!!! GAAAATATGTGAATTTTATA+GGG + chr8.4:12873891-12873910 None:intergenic 15.0%
!!! GACAAAATGATATTTTTATA+GGG - chr8.4:12872356-12872375 MS.gene060356:intron 15.0%
!!! TATAACTTTTTTCATATGAT+GGG + chr8.4:12873126-12873145 None:intergenic 15.0%
!!! TGAAAATATGTGAATTTTAT+AGG + chr8.4:12873892-12873911 None:intergenic 15.0%
!!! TGACAAAATGATATTTTTAT+AGG - chr8.4:12872355-12872374 MS.gene060356:intron 15.0%
!! TGACTAAAAATATATTCAAC+TGG - chr8.4:12874085-12874104 MS.gene060356:CDS 20.0%
!!! AAGTTGATCAAATTTATGTA+GGG - chr8.4:12874026-12874045 MS.gene060356:intron 20.0%
!!! AATGATGTGATATTTTGATT+TGG - chr8.4:12871971-12871990 MS.gene060356:intron 20.0%
!!! AATTTTAATTTTACCTCAAG+AGG + chr8.4:12873795-12873814 None:intergenic 20.0%
!!! AATTTTTGAATGATTGATAC+AGG - chr8.4:12871237-12871256 MS.gene060356:CDS 20.0%
!!! GCATAAATTTTTCAAAATGT+TGG + chr8.4:12873355-12873374 None:intergenic 20.0%
!!! GTATAACTTTTTTCATATGA+TGG + chr8.4:12873127-12873146 None:intergenic 20.0%
!!! TAAGTTGATCAAATTTATGT+AGG - chr8.4:12874025-12874044 MS.gene060356:intron 20.0%
!!! TTCTGATATTTTAACAGATT+GGG - chr8.4:12874143-12874162 MS.gene060356:CDS 20.0%
!!! TTTTGATTTGGATTTAACTT+TGG - chr8.4:12871983-12872002 MS.gene060356:intron 20.0%
! AACAAACTCAAGAAAAAGAT+TGG - chr8.4:12870907-12870926 MS.gene060356:intron 25.0%
! ATAAAACTTCACGATAAATG+AGG + chr8.4:12873993-12874012 None:intergenic 25.0%
! ATAAAATACTTACTGGTAGA+AGG - chr8.4:12871542-12871561 MS.gene060356:intron 25.0%
! ATAAGATTTCAATTCACAAC+AGG + chr8.4:12871480-12871499 None:intergenic 25.0%
! ATTGTCTCTTATATATGAAC+CGG + chr8.4:12871074-12871093 None:intergenic 25.0%
! TAAAATACTTACTGGTAGAA+GGG - chr8.4:12871543-12871562 MS.gene060356:intron 25.0%
! TAGTTAATAGTGTCAAGTAA+TGG + chr8.4:12870991-12871010 None:intergenic 25.0%
! TATCCTCATAAAATACTTAC+TGG - chr8.4:12871535-12871554 MS.gene060356:intron 25.0%
! TATTAATTGATCATGTGTCT+TGG + chr8.4:12873251-12873270 None:intergenic 25.0%
!! ATATCCTCTTGTAGAATTTT+AGG - chr8.4:12873831-12873850 MS.gene060356:CDS 25.0%
!! GTATGATATCTATACTTTTG+AGG - chr8.4:12873148-12873167 MS.gene060356:intron 25.0%
!! TATGTTGTTTATGTTTGTTG+AGG - chr8.4:12871436-12871455 MS.gene060356:intron 25.0%
!! TCTTTTAGATGGAAATTTGA+AGG - chr8.4:12874423-12874442 MS.gene060356:intron 25.0%
!! TGAATAATGGAATTGAAAGA+TGG - chr8.4:12871923-12871942 MS.gene060356:CDS 25.0%
!! TTTTATTGATACCAAGTACA+GGG - chr8.4:12873958-12873977 MS.gene060356:intron 25.0%
!!! ATATTTTAACAGATTGGGAA+AGG - chr8.4:12874148-12874167 MS.gene060356:CDS 25.0%
!!! CGTGAAGTTTTATAAAAGTA+GGG - chr8.4:12874000-12874019 MS.gene060356:intron 25.0%
!!! GTTCTGATATTTTAACAGAT+TGG - chr8.4:12874142-12874161 MS.gene060356:CDS 25.0%
!!! TCGTGAAGTTTTATAAAAGT+AGG - chr8.4:12873999-12874018 MS.gene060356:intron 25.0%
AAAGGTAGGATACTAATTGA+AGG - chr8.4:12874166-12874185 MS.gene060356:CDS 30.0%
ATACTCATCATTCTTGCAAA+GGG - chr8.4:12873070-12873089 MS.gene060356:intron 30.0%
ATATTGCACAAAAAGGCTTA+AGG + chr8.4:12873052-12873071 None:intergenic 30.0%
ATCACATCATTGAACTAGAA+AGG + chr8.4:12871962-12871981 None:intergenic 30.0%
ATTCAATATGCTTCTAGTGA+TGG + chr8.4:12872688-12872707 None:intergenic 30.0%
GATAATATCTTTGTCAGCTT+TGG + chr8.4:12872898-12872917 None:intergenic 30.0%
GATGAGTATATTGCACAAAA+AGG + chr8.4:12873059-12873078 None:intergenic 30.0%
GTCAAAACTACTAATAGTAC+CGG - chr8.4:12872551-12872570 MS.gene060356:CDS 30.0%
TAATTCTTCTCTCTACTATC+TGG - chr8.4:12871684-12871703 MS.gene060356:CDS 30.0%
TACAAGAGGATATGTATGTA+TGG + chr8.4:12873824-12873843 None:intergenic 30.0%
TATACTCATCATTCTTGCAA+AGG - chr8.4:12873069-12873088 MS.gene060356:CDS 30.0%
TATGCCTAAAATTCTACAAG+AGG + chr8.4:12873838-12873857 None:intergenic 30.0%
TTGTATTGAACCAATAGGAA+TGG - chr8.4:12872009-12872028 MS.gene060356:intron 30.0%
! AATGATGTAGTTGCTGTTAT+TGG - chr8.4:12872061-12872080 MS.gene060356:intron 30.0%
! ATTTTCAGTGTTTCAAGAAC+TGG - chr8.4:12871298-12871317 MS.gene060356:intron 30.0%
! CTACCAGTAAGTATTTTATG+AGG + chr8.4:12871541-12871560 None:intergenic 30.0%
! CTTTTATTGATACCAAGTAC+AGG - chr8.4:12873957-12873976 MS.gene060356:intron 30.0%
! GACTTAATTTTCTCTACGAA+GGG - chr8.4:12871160-12871179 MS.gene060356:CDS 30.0%
! GAGAGTGAATATGATTCTTT+TGG - chr8.4:12871622-12871641 MS.gene060356:intron 30.0%
! TGAAGTTTGAAATCAAGTAC+AGG - chr8.4:12873400-12873419 MS.gene060356:CDS 30.0%
! TGACTTAATTTTCTCTACGA+AGG - chr8.4:12871159-12871178 MS.gene060356:CDS 30.0%
! TTTTCAGTGTTTCAAGAACT+GGG - chr8.4:12871299-12871318 MS.gene060356:intron 30.0%
!! ATGTTGTTTCTGAATGTCAT+TGG - chr8.4:12871201-12871220 MS.gene060356:CDS 30.0%
!! CTATGTTTTTAATACACCTC+AGG - chr8.4:12871372-12871391 MS.gene060356:intron 30.0%
!! TCAACAAAAGTTGATGTATC+TGG - chr8.4:12871098-12871117 MS.gene060356:CDS 30.0%
!!! AGTTTTGACTTCTTTGAGAA+TGG + chr8.4:12872540-12872559 None:intergenic 30.0%
!!! TATACTTTTGAGGTATGCTT+GGG - chr8.4:12873158-12873177 MS.gene060356:intron 30.0%
!!! TCAAAGCATGAGTTTTGAAT+TGG + chr8.4:12874501-12874520 None:intergenic 30.0%
!!! TTCTTTTGACGTCACTTTTA+TGG - chr8.4:12873611-12873630 MS.gene060356:intron 30.0%
AAGAAGAAGCTTCAAATGGA+TGG + chr8.4:12872336-12872355 None:intergenic 35.0%
ACGTCTTCAAAATGAAGTGT+CGG + chr8.4:12871729-12871748 None:intergenic 35.0%
AGTTCAACTACTATTTCAGC+TGG - chr8.4:12871655-12871674 MS.gene060356:intron 35.0%
ATACCATGAGACAGACTAAT+GGG - chr8.4:12871575-12871594 MS.gene060356:intron 35.0%
ATCCATGTTATCACCGAAAA+AGG - chr8.4:12872584-12872603 MS.gene060356:CDS 35.0%
ATTACCATGATACTTGTCAG+CGG + chr8.4:12872636-12872655 None:intergenic 35.0%
GCAATGATTTCGATTAAACG+AGG + chr8.4:12873436-12873455 None:intergenic 35.0%
GGCAATTGTATTGAACCAAT+AGG - chr8.4:12872004-12872023 MS.gene060356:intron 35.0%
GTGATAACATGGATCAATAC+AGG + chr8.4:12872578-12872597 None:intergenic 35.0%
GTGATCCATGGTCAATATAT+CGG + chr8.4:12874567-12874586 None:intergenic 35.0%
TAGGGAGTAACAAAACGAAT+TGG - chr8.4:12872374-12872393 MS.gene060356:CDS 35.0%
TATGAAGCTATGAACAATGC+TGG - chr8.4:12872112-12872131 MS.gene060356:intron 35.0%
TCAAAAGAACCACAATGTGT+AGG + chr8.4:12873600-12873619 None:intergenic 35.0%
TCAACAAAAGTCGATGTATC+TGG + chr8.4:12871142-12871161 None:intergenic 35.0%
TCCAATTGATCCTTCTTCTA+CGG + chr8.4:12874362-12874381 None:intergenic 35.0%
TCCATCTAAAAGACCATCAA+GGG + chr8.4:12874416-12874435 None:intergenic 35.0%
TCTATGTTATGACCATCAAC+AGG + chr8.4:12872506-12872525 None:intergenic 35.0%
TGGAAAGCAATTCAAAGCAA+CGG - chr8.4:12872821-12872840 MS.gene060356:CDS 35.0%
TGTCAAGAAGAAGCTTCAAA+TGG + chr8.4:12872340-12872359 None:intergenic 35.0%
TTACACAACATACTTTGCAG+AGG - chr8.4:12872857-12872876 MS.gene060356:CDS 35.0%
TTATGAGTGAAGTAGTACCT+TGG + chr8.4:12871040-12871059 None:intergenic 35.0%
TTCCATCTAAAAGACCATCA+AGG + chr8.4:12874417-12874436 None:intergenic 35.0%
TTCTTCTTCTCACTCTCAAT+GGG - chr8.4:12870852-12870871 MS.gene060356:CDS 35.0%
TTTAACAGATTGGGAAAGGT+AGG - chr8.4:12874152-12874171 MS.gene060356:CDS 35.0%
TTTACATGACAACTATGCAG+TGG - chr8.4:12874521-12874540 MS.gene060356:CDS 35.0%
TTTCAGTGTTTCAAGAACTG+GGG - chr8.4:12871300-12871319 MS.gene060356:intron 35.0%
! ACCTCAGGATAAGATTTTGT+GGG - chr8.4:12871387-12871406 MS.gene060356:intron 35.0%
! AGAGAAGTTGTTATTCTACC+TGG + chr8.4:12873103-12873122 None:intergenic 35.0%
! AGAGATTTTTCATGTGGATC+GGG + chr8.4:12871014-12871033 None:intergenic 35.0%
! ATAGTGTCAAGTAATGGAGT+AGG + chr8.4:12870985-12871004 None:intergenic 35.0%
! GAATATGATTCTTTTGGCAC+TGG - chr8.4:12871628-12871647 MS.gene060356:intron 35.0%
! GAGAGATTTTTCATGTGGAT+CGG + chr8.4:12871015-12871034 None:intergenic 35.0%
! GATAAGATTTTGTGGGATGT+TGG - chr8.4:12871394-12871413 MS.gene060356:intron 35.0%
! GGACATTTAGGTTCAAGTTT+AGG - chr8.4:12871322-12871341 MS.gene060356:intron 35.0%
! TCACAAGGTGTTACAAAAGA+AGG + chr8.4:12870802-12870821 None:intergenic 35.0%
! TTGTTATTCTACCTGGTCAT+AGG + chr8.4:12873096-12873115 None:intergenic 35.0%
!! TCAACACTTTTTGAAGAGCT+TGG - chr8.4:12872464-12872483 MS.gene060356:CDS 35.0%
!! TTTTGAGGGCTAAGTCTATT+AGG - chr8.4:12873189-12873208 MS.gene060356:CDS 35.0%
!!! ATGAGTTGGTTTGATTTTCC+AGG - chr8.4:12872774-12872793 MS.gene060356:intron 35.0%
!!! CTATACTTTTGAGGTATGCT+TGG - chr8.4:12873157-12873176 MS.gene060356:intron 35.0%
AACATGGATCAATACAGGAC+CGG + chr8.4:12872573-12872592 None:intergenic 40.0%
AACCAATAGGAATGGCTGTT+GGG - chr8.4:12872017-12872036 MS.gene060356:intron 40.0%
AAGAGGAATGCCTTTGTACT+CGG + chr8.4:12873778-12873797 None:intergenic 40.0%
ACCGTAGAAGAAGGATCAAT+TGG - chr8.4:12874358-12874377 MS.gene060356:intron 40.0%
ACCTCTCTCAATTCTCTAAG+AGG + chr8.4:12872271-12872290 None:intergenic 40.0%
ACCTCTTAGAGAATTGAGAG+AGG - chr8.4:12872267-12872286 MS.gene060356:intron 40.0%
ACTACTATTTCAGCTGGACT+TGG - chr8.4:12871661-12871680 MS.gene060356:intron 40.0%
ACTCATAAATCACACTCCTC+CGG - chr8.4:12871052-12871071 MS.gene060356:CDS 40.0%
AGAATTGAGAGAGGTTGCAA+AGG - chr8.4:12872276-12872295 MS.gene060356:intron 40.0%
AGCCATCTGTCATAACTCAT+AGG + chr8.4:12874112-12874131 None:intergenic 40.0%
CAAACCAACTCATATCTGTG+AGG + chr8.4:12872767-12872786 None:intergenic 40.0%
CAAGCCATGTTGTTCAACTA+AGG + chr8.4:12874251-12874270 None:intergenic 40.0%
CATACCATGAGACAGACTAA+TGG - chr8.4:12871574-12871593 MS.gene060356:intron 40.0%
CATACTTGGACAAACAAGAG+AGG - chr8.4:12874648-12874667 MS.gene060356:CDS 40.0%
CATGAAAAATCTCTCCACCA+AGG - chr8.4:12871020-12871039 MS.gene060356:intron 40.0%
CATTCCTCACAGATATGAGT+TGG - chr8.4:12872760-12872779 MS.gene060356:intron 40.0%
CTGTCCATTGCAAATCTTAC+AGG + chr8.4:12873552-12873571 None:intergenic 40.0%
CTTCTTCTTCTCACTCTCAA+TGG - chr8.4:12870851-12870870 MS.gene060356:CDS 40.0%
GAAGGATCAATTGGAGGATT+TGG - chr8.4:12874367-12874386 MS.gene060356:intron 40.0%
GAATTTCATGTCCATACCAC+AGG - chr8.4:12873497-12873516 MS.gene060356:intron 40.0%
GAGCTTGGACTCTACTATAT+CGG - chr8.4:12872479-12872498 MS.gene060356:CDS 40.0%
GAGTGAGAAGAAGAAGAAGA+AGG + chr8.4:12870847-12870866 None:intergenic 40.0%
GCAACAGTGTTCAACATACT+TGG - chr8.4:12874634-12874653 MS.gene060356:CDS 40.0%
GCTGACAAGTATCATGGTAA+TGG - chr8.4:12872635-12872654 MS.gene060356:CDS 40.0%
GCTTCCTGTAAGATTTGCAA+TGG - chr8.4:12873545-12873564 MS.gene060356:intron 40.0%
GCTTCCTTAGTTGAACAACA+TGG - chr8.4:12874244-12874263 MS.gene060356:intron 40.0%
GGAGTAACAAAACGAATTGG+AGG - chr8.4:12872377-12872396 MS.gene060356:CDS 40.0%
GTAGAAGAAGGATCAATTGG+AGG - chr8.4:12874361-12874380 MS.gene060356:intron 40.0%
GTCCTATGAGTTATGACAGA+TGG - chr8.4:12874107-12874126 MS.gene060356:CDS 40.0%
GTCTCTTATATATGAACCGG+AGG + chr8.4:12871071-12871090 None:intergenic 40.0%
TAAGACCAGCCATTGACAAT+TGG + chr8.4:12874597-12874616 None:intergenic 40.0%
TACTATATCGGTCCTGTTGA+TGG - chr8.4:12872491-12872510 MS.gene060356:CDS 40.0%
TAGACCTGCAGCAAATGTAA+CGG + chr8.4:12873018-12873037 None:intergenic 40.0%
TCCATGGTCAATATATCGGT+CGG + chr8.4:12874563-12874582 None:intergenic 40.0%
TCCCACAAAATCTTATCCTG+AGG + chr8.4:12871391-12871410 None:intergenic 40.0%
TCTTCTTCTCACTCTCAATG+GGG - chr8.4:12870853-12870872 MS.gene060356:CDS 40.0%
TTACCAACTGCTACTCTTGA+TGG - chr8.4:12872187-12872206 MS.gene060356:intron 40.0%
TTCAGTGTTTCAAGAACTGG+GGG - chr8.4:12871301-12871320 MS.gene060356:intron 40.0%
TTCTCATGTTGCTCAGTTCA+TGG - chr8.4:12874390-12874409 MS.gene060356:intron 40.0%
TTGAATTGCTTTCCAGTTGG+TGG + chr8.4:12872816-12872835 None:intergenic 40.0%
! CAAAGCATCTTGTTGGGAAT+CGG + chr8.4:12872971-12872990 None:intergenic 40.0%
! CACCTCAGGATAAGATTTTG+TGG - chr8.4:12871386-12871405 MS.gene060356:intron 40.0%
! CTTTGAGTAGTGCTCTAAGT+AGG - chr8.4:12872230-12872249 MS.gene060356:intron 40.0%
! GCTTTGAATTGCTTTCCAGT+TGG + chr8.4:12872819-12872838 None:intergenic 40.0%
! GTAGTTGCTGTTATTGGTGA+TGG - chr8.4:12872067-12872086 MS.gene060356:intron 40.0%
! TAACCCATTAGTCTGTCTCA+TGG + chr8.4:12871581-12871600 None:intergenic 40.0%
! TCATGCTTCACTTTCTGAGA+TGG - chr8.4:12870936-12870955 MS.gene060356:intron 40.0%
! TGGTGGAGAGATTTTTCATG+TGG + chr8.4:12871020-12871039 None:intergenic 40.0%
!! ACAAACAAGAGAGGCATTAG+AGG - chr8.4:12874657-12874676 MS.gene060356:CDS 40.0%
!! AGACAGACTAATGGGTTATC+TGG - chr8.4:12871583-12871602 MS.gene060356:intron 40.0%
!! AGGAAGAAGAAGTGTTCTTC+TGG + chr8.4:12870827-12870846 None:intergenic 40.0%
!! CATGCTTCACTTTCTGAGAT+GGG - chr8.4:12870937-12870956 MS.gene060356:intron 40.0%
!! GGAAGAAGAAGTGTTCTTCT+GGG + chr8.4:12870826-12870845 None:intergenic 40.0%
!!! GGATTTTTAGTCCCTGTACT+TGG + chr8.4:12873972-12873991 None:intergenic 40.0%
AAAGCTCCTACAGGTGGTAT+AGG + chr8.4:12872214-12872233 None:intergenic 45.0%
AAAGTTGACGAGTATGCTCG+TGG - chr8.4:12872422-12872441 MS.gene060356:CDS 45.0%
ACATGACAACTATGCAGTGG+AGG - chr8.4:12874524-12874543 MS.gene060356:CDS 45.0%
ACCAAGTTTGATCCACCAAC+TGG - chr8.4:12872801-12872820 MS.gene060356:intron 45.0%
ACCTGCTGACCAATTGTCAA+TGG - chr8.4:12874585-12874604 MS.gene060356:CDS 45.0%
ACTGTTGCTGCTATGTGAGA+GGG + chr8.4:12874622-12874641 None:intergenic 45.0%
AGATTTGCAATGGACAGAGC+TGG - chr8.4:12873555-12873574 MS.gene060356:intron 45.0%
AGGAGAAAGAGTAGCCCTAT+TGG - chr8.4:12874186-12874205 MS.gene060356:CDS 45.0%
ATCATGTACCACCTGTGGTA+TGG + chr8.4:12873511-12873530 None:intergenic 45.0%
ATCGCAATACATGCTGCGAT+GGG - chr8.4:12872915-12872934 MS.gene060356:CDS 45.0%
CAAAGCTCTGCTTCATCAGA+AGG + chr8.4:12873666-12873685 None:intergenic 45.0%
CAACAAGATGCTTTGACGTG+GGG - chr8.4:12872976-12872995 MS.gene060356:CDS 45.0%
CAGTCTGGCAAAATCACATG+AGG - chr8.4:12874327-12874346 MS.gene060356:intron 45.0%
CCAACAAGATGCTTTGACGT+GGG - chr8.4:12872975-12872994 MS.gene060356:CDS 45.0%
CCATGGTCAATATATCGGTC+GGG + chr8.4:12874562-12874581 None:intergenic 45.0%
CGAATCAAGGATCGATCCAA+TGG + chr8.4:12874307-12874326 None:intergenic 45.0%
GAACCAATAGGAATGGCTGT+TGG - chr8.4:12872016-12872035 MS.gene060356:intron 45.0%
GGAGAAAGAGTAGCCCTATT+GGG - chr8.4:12874187-12874206 MS.gene060356:CDS 45.0%
GTTCTGATCACCGTAGAAGA+AGG - chr8.4:12874349-12874368 MS.gene060356:intron 45.0%
TATCGCAATACATGCTGCGA+TGG - chr8.4:12872914-12872933 MS.gene060356:CDS 45.0%
TATGCTCGTGGTATGATCAG+TGG - chr8.4:12872434-12872453 MS.gene060356:CDS 45.0%
TCAAGAACTGGGGGACATTT+AGG - chr8.4:12871310-12871329 MS.gene060356:intron 45.0%
TCAGATGGTCCTACACATTG+TGG - chr8.4:12873588-12873607 MS.gene060356:intron 45.0%
TGAGTGAAGTAGTACCTTGG+TGG + chr8.4:12871037-12871056 None:intergenic 45.0%
TGGAGGTCCTATGCATGAAT+TGG - chr8.4:12872394-12872413 MS.gene060356:CDS 45.0%
TTCGCAGCCAATTCATGCAT+AGG + chr8.4:12872404-12872423 None:intergenic 45.0%
TTTCATGTCCATACCACAGG+TGG - chr8.4:12873500-12873519 MS.gene060356:intron 45.0%
! CCACGTCAAAGCATCTTGTT+GGG + chr8.4:12872977-12872996 None:intergenic 45.0%
! GGATCAAACTTGGTAACTCC+TGG + chr8.4:12872795-12872814 None:intergenic 45.0%
! GTGTCAAGTAATGGAGTAGG+AGG + chr8.4:12870982-12871001 None:intergenic 45.0%
! TGAAGCAGAGCTTTGTCACA+TGG - chr8.4:12873671-12873690 MS.gene060356:intron 45.0%
! TTTTGCCAGACTGCGAATCA+AGG + chr8.4:12874320-12874339 None:intergenic 45.0%
!! AGTGTTCTTCTGGGATCACA+AGG + chr8.4:12870817-12870836 None:intergenic 45.0%
!! ATGGACAGAGCTGGATTAGT+TGG - chr8.4:12873564-12873583 MS.gene060356:intron 45.0%
!! GCCCTTGATGGTCTTTTAGA+TGG - chr8.4:12874412-12874431 MS.gene060356:intron 45.0%
!! GCTGGATTAGTTGGATCAGA+TGG - chr8.4:12873573-12873592 MS.gene060356:intron 45.0%
!! GTACAAAGGCATTCCTCTTG+AGG - chr8.4:12873779-12873798 MS.gene060356:intron 45.0%
!! TCCAGTTGGTGGATCAAACT+TGG + chr8.4:12872805-12872824 None:intergenic 45.0%
!!! ACTTTTGAGGTATGCTTGGG+TGG - chr8.4:12873161-12873180 MS.gene060356:intron 45.0%
!!! GGCCTTTTTCGGTGATAACA+TGG + chr8.4:12872589-12872608 None:intergenic 45.0%
ACAGGAGCTGAAACAGCTTG+CGG - chr8.4:12871255-12871274 MS.gene060356:CDS 50.0%
ACCACAGGTGGTACATGATG+TGG - chr8.4:12873512-12873531 MS.gene060356:intron 50.0%
AGAGTAGCCCTATTGGGCTA+CGG - chr8.4:12874193-12874212 MS.gene060356:intron 50.0%
ATCTTGTTGGGAATCGGCGA+TGG + chr8.4:12872965-12872984 None:intergenic 50.0%
ATTGGTCAGCAGGTGATCCA+TGG + chr8.4:12874579-12874598 None:intergenic 50.0%
CAACATAACACCAACCCACC+TGG + chr8.4:12871423-12871442 None:intergenic 50.0%
CAAGCCGCTGACAAGTATCA+TGG - chr8.4:12872629-12872648 MS.gene060356:CDS 50.0%
CACTGTTGCTGCTATGTGAG+AGG + chr8.4:12874623-12874642 None:intergenic 50.0%
CCCAACAAGATGCTTTGACG+TGG - chr8.4:12872974-12872993 MS.gene060356:CDS 50.0%
CCCGACCGATATATTGACCA+TGG - chr8.4:12874559-12874578 MS.gene060356:CDS 50.0%
CGTGGTATGATCAGTGGTAC+TGG - chr8.4:12872440-12872459 MS.gene060356:CDS 50.0%
CGTTCAGAACTGTTTGGCTG+CGG - chr8.4:12874222-12874241 MS.gene060356:intron 50.0%
CTACTCAAAGCTCCTACAGG+TGG + chr8.4:12872220-12872239 None:intergenic 50.0%
CTCCCAACAGCCATTCCTAT+TGG + chr8.4:12872022-12872041 None:intergenic 50.0%
GAACTTCCAGCCGAGTACAA+AGG - chr8.4:12873765-12873784 MS.gene060356:intron 50.0%
GATGGACCTATACCACCTGT+AGG - chr8.4:12872205-12872224 MS.gene060356:intron 50.0%
GCACTACTCAAAGCTCCTAC+AGG + chr8.4:12872223-12872242 None:intergenic 50.0%
GCCATTGACAATTGGTCAGC+AGG + chr8.4:12874589-12874608 None:intergenic 50.0%
GCTGACCAATTGTCAATGGC+TGG - chr8.4:12874589-12874608 MS.gene060356:CDS 50.0%
GCTGTTGGGAGAGATCTGAA+GGG - chr8.4:12872031-12872050 MS.gene060356:intron 50.0%
GGTCCATCAAGAGTAGCAGT+TGG + chr8.4:12872193-12872212 None:intergenic 50.0%
GTCAGCCGTTCAGAACTGTT+TGG - chr8.4:12874216-12874235 MS.gene060356:intron 50.0%
GTCAGTCTCAGTTTCGTGTC+TGG - chr8.4:12871833-12871852 MS.gene060356:CDS 50.0%
GTTATCACCGAAAAAGGCCG+CGG - chr8.4:12872590-12872609 MS.gene060356:CDS 50.0%
TCCACATCATGTACCACCTG+TGG + chr8.4:12873516-12873535 None:intergenic 50.0%
TGCACGTTTCTGCAAGCCAT+TGG - chr8.4:12874288-12874307 MS.gene060356:intron 50.0%
TTGAGGTATGCTTGGGTGGA+GGG - chr8.4:12873165-12873184 MS.gene060356:intron 50.0%
TTTGTGGGATGTTGGTCACC+AGG - chr8.4:12871402-12871421 MS.gene060356:intron 50.0%
! ACACCAATGCCATTTCCCCT+CGG + chr8.4:12873744-12873763 None:intergenic 50.0%
! AGTTGTTTCCGATACCCGAG+GGG - chr8.4:12873726-12873745 MS.gene060356:intron 50.0%
! CATGCCGTTACATTTGCTGC+AGG - chr8.4:12873011-12873030 MS.gene060356:CDS 50.0%
! CCCACGTCAAAGCATCTTGT+TGG + chr8.4:12872978-12872997 None:intergenic 50.0%
! CTTGGGTGGAGGGTTTTTGA+GGG - chr8.4:12873175-12873194 MS.gene060356:CDS 50.0%
! GAGTTGTTTCCGATACCCGA+GGG - chr8.4:12873725-12873744 MS.gene060356:intron 50.0%
! TCGATCCTTGATTCGCAGTC+TGG - chr8.4:12874312-12874331 MS.gene060356:intron 50.0%
! TGGATATCCGCGGCCTTTTT+CGG + chr8.4:12872600-12872619 None:intergenic 50.0%
! TGGCTTGCAGAAACGTGCAT+CGG + chr8.4:12874287-12874306 None:intergenic 50.0%
! TTTGAGGTATGCTTGGGTGG+AGG - chr8.4:12873164-12873183 MS.gene060356:intron 50.0%
!! CGCAGCCAAACAGTTCTGAA+CGG + chr8.4:12874224-12874243 None:intergenic 50.0%
!! CTCGGGTATCGGAAACAACT+CGG + chr8.4:12873726-12873745 None:intergenic 50.0%
!! TGGTGATGGTGCTATGACAG+CGG - chr8.4:12872081-12872100 MS.gene060356:intron 50.0%
ACAACTCGGTCGATCGTCGA+TGG + chr8.4:12873712-12873731 None:intergenic 55.0%
AGGAGCCATCACCACCATGT+TGG + chr8.4:12873646-12873665 None:intergenic 55.0%
ATACATGCTGCGATGGGAGG+TGG - chr8.4:12872921-12872940 MS.gene060356:CDS 55.0%
ATGTTGGTCACCAGGTGGGT+TGG - chr8.4:12871410-12871429 MS.gene060356:intron 55.0%
CTTGCAAAGGGCCTATGACC+AGG - chr8.4:12873082-12873101 MS.gene060356:intron 55.0%
GACAACTATGCAGTGGAGGC+CGG - chr8.4:12874528-12874547 MS.gene060356:CDS 55.0%
GAGCCATCACCACCATGTTG+GGG + chr8.4:12873644-12873663 None:intergenic 55.0%
GAGTAGCCCTATTGGGCTAC+GGG - chr8.4:12874194-12874213 MS.gene060356:intron 55.0%
GCAATACATGCTGCGATGGG+AGG - chr8.4:12872918-12872937 MS.gene060356:CDS 55.0%
GCTCAGTTCATGGCCCTTGA+TGG - chr8.4:12874400-12874419 MS.gene060356:intron 55.0%
GCTCTGCGTATGGATATCCG+CGG + chr8.4:12872610-12872629 None:intergenic 55.0%
GGAATGCCTTTGTACTCGGC+TGG + chr8.4:12873774-12873793 None:intergenic 55.0%
GGAGCCATCACCACCATGTT+GGG + chr8.4:12873645-12873664 None:intergenic 55.0%
GGCTGTTGGGAGAGATCTGA+AGG - chr8.4:12872030-12872049 MS.gene060356:intron 55.0%
TACCCGAGGGGAAATGGCAT+TGG - chr8.4:12873738-12873757 MS.gene060356:intron 55.0%
TATCGGTCGGGAAGAACCAC+CGG + chr8.4:12874550-12874569 None:intergenic 55.0%
TATGGCATGCCTCCCCAACA+TGG - chr8.4:12873629-12873648 MS.gene060356:intron 55.0%
TGGGATGTTGGTCACCAGGT+GGG - chr8.4:12871406-12871425 MS.gene060356:intron 55.0%
TTCCGATACCCGAGGGGAAA+TGG - chr8.4:12873732-12873751 MS.gene060356:intron 55.0%
! CACCAATGCCATTTCCCCTC+GGG + chr8.4:12873743-12873762 None:intergenic 55.0%
! CGAGTTGTTTCCGATACCCG+AGG - chr8.4:12873724-12873743 MS.gene060356:intron 55.0%
! GCTGCAGGTCTAGCTTGTGA+AGG - chr8.4:12873026-12873045 MS.gene060356:CDS 55.0%
! GCTTGGGTGGAGGGTTTTTG+AGG - chr8.4:12873174-12873193 MS.gene060356:CDS 55.0%
! TGCCATTTCCCCTCGGGTAT+CGG + chr8.4:12873737-12873756 None:intergenic 55.0%
!! GGTGATGGTGCTATGACAGC+GGG - chr8.4:12872082-12872101 MS.gene060356:intron 55.0%
AACTATGCAGTGGAGGCCGG+TGG - chr8.4:12874531-12874550 MS.gene060356:CDS 60.0%
ATCGTCGATGGCTGCTGCAG+TGG + chr8.4:12873700-12873719 None:intergenic 60.0%
CCATCACCACCATGTTGGGG+AGG + chr8.4:12873641-12873660 None:intergenic 60.0%
GGCTGACCCGTAGCCCAATA+GGG + chr8.4:12874203-12874222 None:intergenic 60.0%
GTGGGATGTTGGTCACCAGG+TGG - chr8.4:12871405-12871424 MS.gene060356:intron 60.0%
! CCTCCCCAACATGGTGGTGA+TGG - chr8.4:12873638-12873657 MS.gene060356:intron 60.0%
! TCAGCGGCTTGCTCTGCGTA+TGG + chr8.4:12872620-12872639 None:intergenic 60.0%
CGGCTGACCCGTAGCCCAAT+AGG + chr8.4:12874204-12874223 None:intergenic 65.0%
GCTGCGATGGGAGGTGGAAC+TGG - chr8.4:12872927-12872946 MS.gene060356:CDS 65.0%
GGCATGCCTCCCCAACATGG+TGG - chr8.4:12873632-12873651 MS.gene060356:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 12870775 12874690 12870775 ID=MS.gene060356
chr8.4 mRNA 12870775 12874690 12870775 ID=MS.gene060356.t1;Parent=MS.gene060356
chr8.4 exon 12874424 12874690 12874424 ID=MS.gene060356.t1.exon1;Parent=MS.gene060356.t1
chr8.4 CDS 12874424 12874690 12874424 ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4 exon 12874042 12874206 12874042 ID=MS.gene060356.t1.exon2;Parent=MS.gene060356.t1
chr8.4 CDS 12874042 12874206 12874042 ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4 exon 12873783 12873933 12873783 ID=MS.gene060356.t1.exon3;Parent=MS.gene060356.t1
chr8.4 CDS 12873783 12873933 12873783 ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4 exon 12873168 12873439 12873168 ID=MS.gene060356.t1.exon4;Parent=MS.gene060356.t1
chr8.4 CDS 12873168 12873439 12873168 ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4 exon 12872815 12873088 12872815 ID=MS.gene060356.t1.exon5;Parent=MS.gene060356.t1
chr8.4 CDS 12872815 12873088 12872815 ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4 exon 12872362 12872669 12872362 ID=MS.gene060356.t1.exon6;Parent=MS.gene060356.t1
chr8.4 CDS 12872362 12872669 12872362 ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4 exon 12871665 12871946 12871665 ID=MS.gene060356.t1.exon7;Parent=MS.gene060356.t1
chr8.4 CDS 12871665 12871946 12871665 ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4 exon 12871021 12871305 12871021 ID=MS.gene060356.t1.exon8;Parent=MS.gene060356.t1
chr8.4 CDS 12871021 12871305 12871021 ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
chr8.4 exon 12870775 12870924 12870775 ID=MS.gene060356.t1.exon9;Parent=MS.gene060356.t1
chr8.4 CDS 12870775 12870924 12870775 ID=cds.MS.gene060356.t1;Parent=MS.gene060356.t1
Gene Sequence

>MS.gene060356

ATGGATCTCTGTTCATTAGCATGTCCTTCTTTTGTAACACCTTGTGATCCCAGAAGAACACTTCTTCTTCCTTCTTCTTCTTCTTCTCACTCTCAATGGGGTCTTCATTTCTTCTCTCACTCTCAACAACACAACAAACTCAAGAAAAAGATTGGTGTTGTTCATGCTTCACTTTCTGAGATGGGAGAATATTATTCTCAAAGACCTCCTACTCCATTACTTGACACTATTAACTACCCGATCCACATGAAAAATCTCTCCACCAAGGTACTACTTCACTCATAAATCACACTCCTCCGGTTCATATATAAGAGACAATTGAGTCAACAAAAGTTGATGTATCTGGTCGAGATACATCATTTGACCAGATACATCGACTTTTGTTGACTTAATTTTCTCTACGAAGGGAGTATACTATAGTTGCTTATGTTGTTTCTGAATGTCATTGGTTTTAATTACTATAATTTTTGAATGATTGATACAGGAGCTGAAACAGCTTGCGGATGAACTACGTTCTGATGTTATTTTCAGTGTTTCAAGAACTGGGGGACATTTAGGTTCAAGTTTAGGTGTTGTTGAACTCACTATTGCTCTTCACTATGTTTTTAATACACCTCAGGATAAGATTTTGTGGGATGTTGGTCACCAGGTGGGTTGGTGTTATGTTGTTTATGTTTGTTGAGGATGAAATTTTGTTTGATACCTGTTGTGAATTGAAATCTTATGTTTTGCTTTTTTTTTTTTTTTTTTTTTGCAGTCATATCCTCATAAAATACTTACTGGTAGAAGGGATAAGATGCATACCATGAGACAGACTAATGGGTTATCTGGATTTACAAAACGTTCTGAGAGTGAATATGATTCTTTTGGCACTGGTCATAGTTCAACTACTATTTCAGCTGGACTTGGTAATTCTTCTCTCTACTATCTGGCTCTTAAAACTATGTAGCACCGACACTTCATTTTGAAGACGTGAGCACTGACATGACATCTATAAATGTATTACATTTAGTTATTTAGTTCTTCCAATTTTTTCAAATTAATATCGGTGTTAACGTGTCAGTCTCAGTTTCGTGTCTGGTGTTTGAGTCAGTGCTTCATAGTTTAAGACAAATGATTTTTCAGTCAACATATGATATTTACATGAATGAATAATGGAATTGAAAGATGGTGTGTAAGCTTGTCCTTTCTAGTTCAATGATGTGATATTTTGATTTGGATTTAACTTTGGCAATTGTATTGAACCAATAGGAATGGCTGTTGGGAGAGATCTGAAGGGAAGAAAGAATGATGTAGTTGCTGTTATTGGTGATGGTGCTATGACAGCGGGTCAAGCTTATGAAGCTATGAACAATGCTGGATATCTTGATTCTGATATGATTGTAATTTTGAATGACAACAAACAAGTTTCTTTACCAACTGCTACTCTTGATGGACCTATACCACCTGTAGGAGCTTTGAGTAGTGCTCTAAGTAGGTTACAATCAAACAAACCTCTTAGAGAATTGAGAGAGGTTGCAAAGGTGAGTAATAATACACTTAATGAGTTATCTCAAGACCATCCATTTGAAGCTTCTTCTTGACAAAATGATATTTTTATAGGGAGTAACAAAACGAATTGGAGGTCCTATGCATGAATTGGCTGCGAAAGTTGACGAGTATGCTCGTGGTATGATCAGTGGTACTGGATCAACACTTTTTGAAGAGCTTGGACTCTACTATATCGGTCCTGTTGATGGTCATAACATAGATGATCTAGTTGCCATTCTCAAAGAAGTCAAAACTACTAATAGTACCGGTCCTGTATTGATCCATGTTATCACCGAAAAAGGCCGCGGATATCCATACGCAGAGCAAGCCGCTGACAAGTATCATGGTAATGGACCTTATATATTTTGAACAATTACTATCCATCACTAGAAGCATATTGAATAATCTCAAACTAAGATCTATCTGTCTAGCGACATATATGCTTTGACTTGCTGCATTCCTCACAGATATGAGTTGGTTTGATTTTCCAGGAGTTACCAAGTTTGATCCACCAACTGGAAAGCAATTCAAAGCAACGGCTAAAACGCAGTCTTACACAACATACTTTGCAGAGGCTTTGATTGCAGAAGCCAAAGCTGACAAAGATATTATCGCAATACATGCTGCGATGGGAGGTGGAACTGGCATGAATCTCTTCCATCGCCGATTCCCAACAAGATGCTTTGACGTGGGGATAGCAGAACAGCATGCCGTTACATTTGCTGCAGGTCTAGCTTGTGAAGGCCTTAAGCCTTTTTGTGCAATATACTCATCATTCTTGCAAAGGGCCTATGACCAGGTAGAATAACAACTTCTCTCCCATCATATGAAAAAAGTTATACAGTATGATATCTATACTTTTGAGGTATGCTTGGGTGGAGGGTTTTTGAGGGCTAAGTCTATTAGGTAATAAATTTGAGATTTTAAATTTTTTGAAAGAATACCAAGACACATGATCAATTAATATTACAATCGCAATTCATCATTTGAAACATTTTATAGCTTCCTTAATTTAAATAATTAAAATAAGAACTTATCTGTTCTCTCCCAACATTTTGAAAAATTTATGCGGTGTGAATCGAGAAGTTCATATTTTGAAGTTTGAAATCAAGTACAGGAACTAAAAATCCTCGTTTAATCGAAATCATTGCACAAATATGAACTTGAAAATTGAAACTAGTGCTCAAAGTATGAATTTCATGTCCATACCACAGGTGGTACATGATGTGGATTTGCAAAAGCTTCCTGTAAGATTTGCAATGGACAGAGCTGGATTAGTTGGATCAGATGGTCCTACACATTGTGGTTCTTTTGACGTCACTTTTATGGCATGCCTCCCCAACATGGTGGTGATGGCTCCTTCTGATGAAGCAGAGCTTTGTCACATGGTTGCCACTGCAGCAGCCATCGACGATCGACCGAGTTGTTTCCGATACCCGAGGGGAAATGGCATTGGTGTTGAACTTCCAGCCGAGTACAAAGGCATTCCTCTTGAGGTAAAATTAAAATTATTTCTCCATACATACATATCCTCTTGTAGAATTTTAGGCATAACATTACAAATTACTAAATATGTTTTTAGTCCCTATAAAATTCACATATTTTCAAGTTTTTCCCTACATAAATTTTGTTCAATTTTAGTCTTTAATTTGCTTTTATTGATACCAAGTACAGGGACTAAAAATCCTCATTTATCGTGAAGTTTTATAAAAGTAGGGACTAAGTTGATCAAATTTATGTAGGGACTAATTACTAAACATAAAAAGTCATAATTTTGTACTGACTAAAAATATATTCAACTGGTCCTATGAGTTATGACAGATGGCTTGACATTTGTGTTCTGATATTTTAACAGATTGGGAAAGGTAGGATACTAATTGAAGGAGAAAGAGTAGCCCTATTGGGCTACGGGTCAGCCGTTCAGAACTGTTTGGCTGCGGCTTCCTTAGTTGAACAACATGGCTTGCGCTTAACTGTTGCCGATGCACGTTTCTGCAAGCCATTGGATCGATCCTTGATTCGCAGTCTGGCAAAATCACATGAGGTTCTGATCACCGTAGAAGAAGGATCAATTGGAGGATTTGGTTCTCATGTTGCTCAGTTCATGGCCCTTGATGGTCTTTTAGATGGAAATTTGAAGGTAAGAAAGTAAACAAGTCCCTTTTCAATGTAAACATTAAATACTACTAGTTGCCAATTCAAAACTCATGCTTTGATTTACATGACAACTATGCAGTGGAGGCCGGTGGTTCTTCCCGACCGATATATTGACCATGGATCACCTGCTGACCAATTGTCAATGGCTGGTCTTACACCCTCTCACATAGCAGCAACAGTGTTCAACATACTTGGACAAACAAGAGAGGCATTAGAGGTCATGTCATAA

Protein sequence

>MS.gene060356.t1

MDLCSLACPSFVTPCDPRRTLLLPSSSSSHSQWGLHFFSHSQQHNKLKKKIGVVHASLSEMGEYYSQRPPTPLLDTINYPIHMKNLSTKELKQLADELRSDVIFSVSRTGGHLGSSLGVVELTIALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMHTMRQTNGLSGFTKRSESEYDSFGTGHSSTTISAGLGMAVGRDLKGRKNDVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNKPLRELREVAKGVTKRIGGPMHELAAKVDEYARGMISGTGSTLFEELGLYYIGPVDGHNIDDLVAILKEVKTTNSTGPVLIHVITEKGRGYPYAEQAADKYHGVTKFDPPTGKQFKATAKTQSYTTYFAEALIAEAKADKDIIAIHAAMGGGTGMNLFHRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRAYDQVVHDVDLQKLPVRFAMDRAGLVGSDGPTHCGSFDVTFMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSCFRYPRGNGIGVELPAEYKGIPLEIGKGRILIEGERVALLGYGSAVQNCLAAASLVEQHGLRLTVADARFCKPLDRSLIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGNLKWRPVVLPDRYIDHGSPADQLSMAGLTPSHIAATVFNILGQTREALEVMS