Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25964.t1 | XP_003601269.1 | 95 | 318 | 13 | 1 | 1 | 315 | 1 | 318 | 7.90E-165 | 589.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25964.t1 | Q9ZUD9 | 36.1 | 310 | 180 | 4 | 15 | 307 | 8 | 316 | 5.2e-48 | 193.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25964.t1 | G7J5G4 | 95.0 | 318 | 13 | 1 | 1 | 315 | 1 | 318 | 5.7e-165 | 589.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05141 | MS.gene25964 | 0.805182 | 1.51E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene25964 | -0.80094 | 1.14E-48 | -1.69E-46 |
| MS.gene05234 | MS.gene25964 | 0.804919 | 1.71E-49 | -1.69E-46 |
| MS.gene053421 | MS.gene25964 | 0.859841 | 3.13E-63 | -1.69E-46 |
| MS.gene057173 | MS.gene25964 | 0.837762 | 4.29E-57 | -1.69E-46 |
| MS.gene061226 | MS.gene25964 | 0.831692 | 1.45E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25964.t1 | MTR_3g077870 | 94.969 | 318 | 13 | 1 | 1 | 315 | 1 | 318 | 0.0 | 620 |
| MS.gene25964.t1 | MTR_4g105740 | 49.518 | 311 | 141 | 5 | 9 | 315 | 11 | 309 | 2.10e-101 | 300 |
| MS.gene25964.t1 | MTR_4g105740 | 49.508 | 305 | 138 | 5 | 9 | 309 | 11 | 303 | 4.19e-99 | 295 |
| MS.gene25964.t1 | MTR_8g088250 | 35.507 | 276 | 166 | 4 | 39 | 303 | 5 | 279 | 1.68e-53 | 177 |
| MS.gene25964.t1 | MTR_1g112330 | 28.657 | 335 | 193 | 6 | 6 | 299 | 223 | 552 | 3.64e-39 | 145 |
| MS.gene25964.t1 | MTR_1g112330 | 28.402 | 338 | 193 | 6 | 6 | 299 | 223 | 555 | 8.83e-39 | 144 |
| MS.gene25964.t1 | MTR_5g032190 | 29.969 | 327 | 173 | 8 | 20 | 300 | 233 | 549 | 3.01e-36 | 137 |
| MS.gene25964.t1 | MTR_5g029580 | 29.021 | 286 | 160 | 8 | 58 | 305 | 64 | 344 | 5.30e-34 | 128 |
| MS.gene25964.t1 | MTR_1g112330 | 32.328 | 232 | 144 | 5 | 8 | 231 | 225 | 451 | 4.87e-33 | 127 |
| MS.gene25964.t1 | MTR_7g011550 | 29.643 | 280 | 159 | 7 | 64 | 309 | 257 | 532 | 1.51e-32 | 126 |
| MS.gene25964.t1 | MTR_5g032190 | 34.234 | 222 | 126 | 7 | 20 | 231 | 233 | 444 | 2.04e-30 | 120 |
| MS.gene25964.t1 | MTR_5g032190 | 34.234 | 222 | 126 | 7 | 20 | 231 | 233 | 444 | 2.48e-30 | 120 |
| MS.gene25964.t1 | MTR_7g011880 | 32.110 | 109 | 66 | 2 | 182 | 282 | 78 | 186 | 6.35e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25964.t1 | AT1G23550 | 37.500 | 280 | 162 | 3 | 47 | 314 | 45 | 323 | 9.89e-63 | 202 |
| MS.gene25964.t1 | AT3G47720 | 36.709 | 316 | 176 | 8 | 10 | 311 | 8 | 313 | 5.81e-57 | 187 |
| MS.gene25964.t1 | AT5G62520 | 40.727 | 275 | 145 | 8 | 47 | 311 | 42 | 308 | 1.44e-55 | 183 |
| MS.gene25964.t1 | AT1G70440 | 31.908 | 304 | 185 | 7 | 20 | 307 | 7 | 304 | 1.42e-47 | 162 |
| MS.gene25964.t1 | AT1G70440 | 31.908 | 304 | 185 | 7 | 20 | 307 | 7 | 304 | 1.42e-47 | 162 |
| MS.gene25964.t1 | AT1G32230 | 31.333 | 300 | 155 | 7 | 58 | 311 | 276 | 570 | 4.84e-40 | 147 |
| MS.gene25964.t1 | AT1G32230 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 1.31e-39 | 147 |
| MS.gene25964.t1 | AT1G32230 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 1.31e-39 | 147 |
| MS.gene25964.t1 | AT1G32230 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 1.31e-39 | 147 |
| MS.gene25964.t1 | AT1G32230 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 1.31e-39 | 147 |
| MS.gene25964.t1 | AT1G32230 | 31.741 | 293 | 148 | 7 | 58 | 303 | 276 | 563 | 1.88e-39 | 146 |
| MS.gene25964.t1 | AT5G62520 | 40.104 | 192 | 100 | 7 | 47 | 228 | 42 | 228 | 2.00e-37 | 134 |
| MS.gene25964.t1 | AT2G35510 | 29.904 | 311 | 151 | 8 | 48 | 303 | 262 | 560 | 1.24e-31 | 124 |
| MS.gene25964.t1 | AT2G35510 | 29.904 | 311 | 151 | 8 | 48 | 303 | 262 | 560 | 1.24e-31 | 124 |
| MS.gene25964.t1 | AT2G35510 | 32.642 | 193 | 111 | 4 | 48 | 230 | 262 | 445 | 1.78e-25 | 106 |
Find 68 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATACTGTGCAGGGTTATTT+TGG | 0.115015 | 3.2:+68859399 | MS.gene25964:CDS |
| AGTTGTGCGGATTATGATTC+TGG | 0.187777 | 3.2:+68859466 | MS.gene25964:CDS |
| TTCTCCTAACCTAACTAAAA+AGG | 0.275442 | 3.2:-68858212 | None:intergenic |
| CTTTGTAGAACTTGCAAATC+AGG | 0.284073 | 3.2:-68859800 | None:intergenic |
| CTCCAACTAAGTACATGATT+TGG | 0.360085 | 3.2:+68859506 | MS.gene25964:CDS |
| CTAAAGACGAGGTTTCTTCA+TGG | 0.400145 | 3.2:+68858256 | MS.gene25964:CDS |
| GACGAGGTTTCTTCATGGCT+TGG | 0.402614 | 3.2:+68858261 | MS.gene25964:CDS |
| ACGAGGTTTCTTCATGGCTT+GGG | 0.407523 | 3.2:+68858262 | MS.gene25964:CDS |
| TTCTTCGCCGGTGGTGGTGG+CGG | 0.412701 | 3.2:-68858161 | None:intergenic |
| CAAGTTCTACAAAGCTAGAA+AGG | 0.426903 | 3.2:+68859809 | MS.gene25964:CDS |
| GTAGAATGAATACTCATGTT+TGG | 0.434386 | 3.2:+68859533 | MS.gene25964:CDS |
| ACTGGTGAGAATGACGTTAG+AGG | 0.440885 | 3.2:+68858442 | MS.gene25964:CDS |
| CATCATGATCCCATTCCTCT+TGG | 0.443393 | 3.2:-68858087 | None:intergenic |
| CTTTGAAGAGGAGAATCATC+TGG | 0.446663 | 3.2:-68858517 | None:intergenic |
| TTCAAGGTTTCTTCTTTGAA+AGG | 0.449498 | 3.2:+68859574 | MS.gene25964:CDS |
| GTTGTGCGGATTATGATTCT+GGG | 0.450865 | 3.2:+68859467 | MS.gene25964:CDS |
| CTCCAAATCATGTACTTAGT+TGG | 0.452958 | 3.2:-68859508 | None:intergenic |
| TTGTTCTTCGCCGGTGGTGG+TGG | 0.454132 | 3.2:-68858164 | None:intergenic |
| ATCAAGTTGTGGCGAAACCT+TGG | 0.465639 | 3.2:-68859772 | None:intergenic |
| TGAGGCATTTGATACTGTGC+AGG | 0.465779 | 3.2:+68859389 | MS.gene25964:CDS |
| GGAGGAGTCTTCACCGATGC+TGG | 0.466913 | 3.2:-68858110 | None:intergenic |
| TTTGCAGCGGTTGAGATTGA+AGG | 0.470522 | 3.2:+68859693 | MS.gene25964:intron |
| TATGGAATTCCAAGAGGAAT+GGG | 0.475448 | 3.2:+68858078 | None:intergenic |
| ATAGAAATCAAAGTCGGAAA+AGG | 0.484157 | 3.2:-68859744 | None:intergenic |
| TGCGAGACCAACTTCACCTT+CGG | 0.491538 | 3.2:+68859719 | MS.gene25964:CDS |
| ACCGCTTTCGCAGTCGGAAA+CGG | 0.496051 | 3.2:-68858134 | None:intergenic |
| TTTGATTTCTATGCTTTCCA+AGG | 0.497741 | 3.2:+68859755 | MS.gene25964:CDS |
| GAATCATAATCCGCACAACT+TGG | 0.501035 | 3.2:-68859463 | None:intergenic |
| TATGCTTGGTATGGAGCTAC+TGG | 0.501397 | 3.2:+68858424 | MS.gene25964:CDS |
| TTCGCAGTCGGAAACGGTGG+AGG | 0.502683 | 3.2:-68858128 | None:intergenic |
| TCGAAGCCGCGCCTGTGAAA+CGG | 0.510220 | 3.2:-68858341 | None:intergenic |
| TTGAAGCTTAAAACATATGC+AGG | 0.515889 | 3.2:-68859556 | None:intergenic |
| TAAAGAACTAACCTTTGAAG+AGG | 0.520559 | 3.2:-68858529 | None:intergenic |
| TTTGTAGAACTTGCAAATCA+GGG | 0.522828 | 3.2:-68859799 | None:intergenic |
| GTGTTCTGACGCCGTTTCAC+AGG | 0.529220 | 3.2:+68858330 | MS.gene25964:CDS |
| AACGGTTTCAGTCATGTCCA+TGG | 0.529234 | 3.2:+68858475 | MS.gene25964:CDS |
| GAAGAAACCTCGTCTTTAGT+AGG | 0.529434 | 3.2:-68858252 | None:intergenic |
| TCGTTGTTCTTCGCCGGTGG+TGG | 0.529479 | 3.2:-68858167 | None:intergenic |
| AGTTGTGCTGTTGGCAGAGA+TGG | 0.530261 | 3.2:+68859364 | MS.gene25964:CDS |
| CTATGGAATTCCAAGAGGAA+TGG | 0.530385 | 3.2:+68858077 | None:intergenic |
| ACCGTTTCCGACTGCGAAAG+CGG | 0.530594 | 3.2:+68858133 | MS.gene25964:CDS |
| GGTGTTTCCGCCACCACCAC+CGG | 0.531519 | 3.2:+68858154 | MS.gene25964:CDS |
| GTTAGAGGCATTCTATCAAA+CGG | 0.543708 | 3.2:+68858457 | MS.gene25964:CDS |
| ATTCGAATGTGAAATATGCT+TGG | 0.547805 | 3.2:+68858410 | MS.gene25964:CDS |
| CAGATGATTCTCCTCTTCAA+AGG | 0.551412 | 3.2:+68858518 | MS.gene25964:CDS |
| AATGTGAAATATGCTTGGTA+TGG | 0.558383 | 3.2:+68858415 | MS.gene25964:CDS |
| TCGTTGTCGTTGTTCTTCGC+CGG | 0.558549 | 3.2:-68858173 | None:intergenic |
| GGAAACACCGCTTTCGCAGT+CGG | 0.561570 | 3.2:-68858140 | None:intergenic |
| TTGTCGTTGTTCTTCGCCGG+TGG | 0.567729 | 3.2:-68858170 | None:intergenic |
| AAAGGCACCGAAGGTGAAGT+TGG | 0.570890 | 3.2:-68859726 | None:intergenic |
| GAAGCTGTTTCGAAACTTCG+CGG | 0.575795 | 3.2:+68858382 | MS.gene25964:CDS |
| CTGACGCCGTTTCACAGGCG+CGG | 0.588804 | 3.2:+68858335 | MS.gene25964:CDS |
| GAATGAAACTAGTTGTACCT+TGG | 0.596219 | 3.2:-68860029 | None:intergenic |
| ACGGTTTCAGTCATGTCCAT+GGG | 0.601023 | 3.2:+68858476 | MS.gene25964:CDS |
| TGGGATCATGATGCCAGCAT+CGG | 0.605132 | 3.2:+68858097 | MS.gene25964:CDS |
| AAAGTCGGAAAAGGCACCGA+AGG | 0.610022 | 3.2:-68859735 | None:intergenic |
| GAAAGCATAGAAATCAAAGT+CGG | 0.616257 | 3.2:-68859750 | None:intergenic |
| AGAGACAGATGCTATTCCCA+TGG | 0.619618 | 3.2:-68858492 | None:intergenic |
| GAGGCATTTGATACTGTGCA+GGG | 0.621915 | 3.2:+68859390 | MS.gene25964:CDS |
| ATCAGGGCAATATCAAGTTG+TGG | 0.630687 | 3.2:-68859783 | None:intergenic |
| GCTTTCGCAGTCGGAAACGG+TGG | 0.645384 | 3.2:-68858131 | None:intergenic |
| CATTAAGTATTATAGAGCCA+AGG | 0.648089 | 3.2:+68860012 | MS.gene25964:CDS |
| ACAATGTTATCCAAGTTGTG+CGG | 0.655418 | 3.2:+68859453 | MS.gene25964:CDS |
| TTCACGACCTACTAAAGACG+AGG | 0.669260 | 3.2:+68858245 | MS.gene25964:CDS |
| TTGTGCGGATTATGATTCTG+GGG | 0.671025 | 3.2:+68859468 | MS.gene25964:CDS |
| CTGTTGGCAGAGATGGCGTG+AGG | 0.672325 | 3.2:+68859371 | MS.gene25964:CDS |
| GCTGTTTCGAAACTTCGCGG+TGG | 0.700179 | 3.2:+68858385 | MS.gene25964:CDS |
| ATTCACTATGGAATTCCAAG+AGG | 0.710595 | 3.2:+68858072 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTAATTGATTCTACT+TGG | + | chr3.2:68858788-68858807 | MS.gene25964:intron | 15.0% |
| !! | ACCTAAATTCAAATTAACAT+TGG | - | chr3.2:68858559-68858578 | None:intergenic | 20.0% |
| !!! | AAGATAAAGTGTTTTATGTT+TGG | - | chr3.2:68859135-68859154 | None:intergenic | 20.0% |
| !!! | TCCAATGTTAATTTGAATTT+AGG | + | chr3.2:68858555-68858574 | MS.gene25964:intron | 20.0% |
| !!! | TTTTTTATTGTTTTTTGCAG+CGG | + | chr3.2:68859680-68859699 | MS.gene25964:intron | 20.0% |
| ! | ACTAAATTCATGAAACAACA+AGG | - | chr3.2:68859647-68859666 | None:intergenic | 25.0% |
| ! | TCAAGTATAATCAATTCTTG+AGG | - | chr3.2:68859038-68859057 | None:intergenic | 25.0% |
| ! | TTGAACAATAAGTGTATGTA+TGG | - | chr3.2:68859213-68859232 | None:intergenic | 25.0% |
| !! | CTTTTTCTATCAATTCATGT+CGG | - | chr3.2:68859955-68859974 | None:intergenic | 25.0% |
| !! | TTTTTCTATCAATTCATGTC+GGG | - | chr3.2:68859954-68859973 | None:intergenic | 25.0% |
| !!! | ATTCTGATTCCTTTTTAGTT+AGG | + | chr3.2:68858203-68858222 | MS.gene25964:CDS | 25.0% |
| !!! | TAGAATTGATTTTGCCATTT+TGG | + | chr3.2:68858754-68858773 | MS.gene25964:intron | 25.0% |
| AAATAAGGCAACATTCCATA+AGG | + | chr3.2:68858694-68858713 | MS.gene25964:intron | 30.0% | |
| AATGTGAAATATGCTTGGTA+TGG | + | chr3.2:68858415-68858434 | MS.gene25964:CDS | 30.0% | |
| AGCTTCTGCATAAAAAAGAA+AGG | - | chr3.2:68858368-68858387 | None:intergenic | 30.0% | |
| ATACTCAATAGCAACCAAAA+TGG | - | chr3.2:68858771-68858790 | None:intergenic | 30.0% | |
| ATAGAAATCAAAGTCGGAAA+AGG | - | chr3.2:68859747-68859766 | None:intergenic | 30.0% | |
| ATTCGAATGTGAAATATGCT+TGG | + | chr3.2:68858410-68858429 | MS.gene25964:CDS | 30.0% | |
| ATTTCATAAGCTATTCCAAC+CGG | + | chr3.2:68858664-68858683 | MS.gene25964:intron | 30.0% | |
| CATTAAGTATTATAGAGCCA+AGG | + | chr3.2:68860012-68860031 | MS.gene25964:CDS | 30.0% | |
| GTAGAATGAATACTCATGTT+TGG | + | chr3.2:68859533-68859552 | MS.gene25964:CDS | 30.0% | |
| TCTTAAACCAATATGCAAGT+AGG | - | chr3.2:68859853-68859872 | None:intergenic | 30.0% | |
| TTCAAGGTTTCTTCTTTGAA+AGG | + | chr3.2:68859574-68859593 | MS.gene25964:CDS | 30.0% | |
| TTCTCCTAACCTAACTAAAA+AGG | - | chr3.2:68858215-68858234 | None:intergenic | 30.0% | |
| TTGAAGCTTAAAACATATGC+AGG | - | chr3.2:68859559-68859578 | None:intergenic | 30.0% | |
| TTTGTAGAACTTGCAAATCA+GGG | - | chr3.2:68859802-68859821 | None:intergenic | 30.0% | |
| ! | GAAAGCATAGAAATCAAAGT+CGG | - | chr3.2:68859753-68859772 | None:intergenic | 30.0% |
| ! | TAAAGAACTAACCTTTGAAG+AGG | - | chr3.2:68858532-68858551 | None:intergenic | 30.0% |
| ! | TTTGATTTCTATGCTTTCCA+AGG | + | chr3.2:68859755-68859774 | MS.gene25964:CDS | 30.0% |
| ! | TTTTCGTTTCTGACTAAAAG+TGG | - | chr3.2:68858866-68858885 | None:intergenic | 30.0% |
| !! | ACTGATTTTCACATGTTTGA+TGG | + | chr3.2:68858990-68859009 | MS.gene25964:intron | 30.0% |
| !! | TGCATATGTTTTAAGCTTCA+AGG | + | chr3.2:68859558-68859577 | MS.gene25964:CDS | 30.0% |
| !!! | GATTCCTTTTTAGTTAGGTT+AGG | + | chr3.2:68858208-68858227 | MS.gene25964:CDS | 30.0% |
| !!! | TTTTTAGTTAGGTTAGGAGA+AGG | + | chr3.2:68858214-68858233 | MS.gene25964:CDS | 30.0% |
| ACAATGTTATCCAAGTTGTG+CGG | + | chr3.2:68859453-68859472 | MS.gene25964:CDS | 35.0% | |
| ACACATGCTTAGTGTATGTT+TGG | + | chr3.2:68858924-68858943 | MS.gene25964:intron | 35.0% | |
| AGTGTAAAAAGTTGTGCTGT+TGG | + | chr3.2:68859355-68859374 | MS.gene25964:intron | 35.0% | |
| CAAGTTCTACAAAGCTAGAA+AGG | + | chr3.2:68859809-68859828 | MS.gene25964:CDS | 35.0% | |
| CGAAATGTCTAGTGTATGTT+TGG | + | chr3.2:68858722-68858741 | MS.gene25964:intron | 35.0% | |
| CTCCAAATCATGTACTTAGT+TGG | - | chr3.2:68859511-68859530 | None:intergenic | 35.0% | |
| CTCCAACTAAGTACATGATT+TGG | + | chr3.2:68859506-68859525 | MS.gene25964:CDS | 35.0% | |
| CTTTGTAGAACTTGCAAATC+AGG | - | chr3.2:68859803-68859822 | None:intergenic | 35.0% | |
| GAAAAAGTGAGACAAATTGC+AGG | + | chr3.2:68859968-68859987 | MS.gene25964:CDS | 35.0% | |
| GAATGAAACTAGTTGTACCT+TGG | - | chr3.2:68860032-68860051 | None:intergenic | 35.0% | |
| GACTAAAAGTGGTATGTGTT+TGG | - | chr3.2:68858855-68858874 | None:intergenic | 35.0% | |
| TTCTACAAAGCTAGAAAGGT+AGG | + | chr3.2:68859813-68859832 | MS.gene25964:intron | 35.0% | |
| TTTCATAAGCTATTCCAACC+GGG | + | chr3.2:68858665-68858684 | MS.gene25964:intron | 35.0% | |
| TTTGCTTCCTACTTGCATAT+TGG | + | chr3.2:68859843-68859862 | MS.gene25964:intron | 35.0% | |
| ! | ACTTCTAGAGGGATCAAAAT+TGG | + | chr3.2:68858951-68858970 | MS.gene25964:intron | 35.0% |
| ! | ATGTTTGGTTTCACTTCTAG+AGG | + | chr3.2:68858939-68858958 | MS.gene25964:intron | 35.0% |
| ! | GGCAAAATCAATTCTAAGAG+TGG | - | chr3.2:68858750-68858769 | None:intergenic | 35.0% |
| ! | TCATTTGCTCTATTTCTTGC+AGG | + | chr3.2:68859916-68859935 | MS.gene25964:intron | 35.0% |
| ! | TGTTTGGTTTCACTTCTAGA+GGG | + | chr3.2:68858940-68858959 | MS.gene25964:intron | 35.0% |
| !! | ATACTGTGCAGGGTTATTTT+GGG | + | chr3.2:68859400-68859419 | MS.gene25964:CDS | 35.0% |
| !! | GTTAGAGGCATTCTATCAAA+CGG | + | chr3.2:68858457-68858476 | MS.gene25964:CDS | 35.0% |
| !! | GTTGCCTTATTTCTATAACC+CGG | - | chr3.2:68858686-68858705 | None:intergenic | 35.0% |
| AAAGCTAGAAAGGTAGGTGT+TGG | + | chr3.2:68859819-68859838 | MS.gene25964:intron | 40.0% | |
| AGACATTTCGAGAGACCTTA+TGG | - | chr3.2:68858712-68858731 | None:intergenic | 40.0% | |
| CAGATGATTCTCCTCTTCAA+AGG | + | chr3.2:68858518-68858537 | MS.gene25964:CDS | 40.0% | |
| CCAACCGGGTTATAGAAATA+AGG | + | chr3.2:68858679-68858698 | MS.gene25964:intron | 40.0% | |
| CTAAAGACGAGGTTTCTTCA+TGG | + | chr3.2:68858256-68858275 | MS.gene25964:CDS | 40.0% | |
| GAAGAAACCTCGTCTTTAGT+AGG | - | chr3.2:68858255-68858274 | None:intergenic | 40.0% | |
| GAATCATAATCCGCACAACT+TGG | - | chr3.2:68859466-68859485 | None:intergenic | 40.0% | |
| ! | AGTTGTGCGGATTATGATTC+TGG | + | chr3.2:68859466-68859485 | MS.gene25964:CDS | 40.0% |
| ! | ATCAGGGCAATATCAAGTTG+TGG | - | chr3.2:68859786-68859805 | None:intergenic | 40.0% |
| ! | CTTTGAAGAGGAGAATCATC+TGG | - | chr3.2:68858520-68858539 | None:intergenic | 40.0% |
| ! | GATACTGTGCAGGGTTATTT+TGG | + | chr3.2:68859399-68859418 | MS.gene25964:CDS | 40.0% |
| ! | GTTGTGCGGATTATGATTCT+GGG | + | chr3.2:68859467-68859486 | MS.gene25964:CDS | 40.0% |
| ! | TTGTGCGGATTATGATTCTG+GGG | + | chr3.2:68859468-68859487 | MS.gene25964:CDS | 40.0% |
| !! | CCTTATTTCTATAACCCGGT+TGG | - | chr3.2:68858682-68858701 | None:intergenic | 40.0% |
| AACGGTTTCAGTCATGTCCA+TGG | + | chr3.2:68858475-68858494 | MS.gene25964:CDS | 45.0% | |
| ACGAGGTTTCTTCATGGCTT+GGG | + | chr3.2:68858262-68858281 | MS.gene25964:CDS | 45.0% | |
| ACGGTTTCAGTCATGTCCAT+GGG | + | chr3.2:68858476-68858495 | MS.gene25964:CDS | 45.0% | |
| ACTGGTGAGAATGACGTTAG+AGG | + | chr3.2:68858442-68858461 | MS.gene25964:CDS | 45.0% | |
| AGAGACAGATGCTATTCCCA+TGG | - | chr3.2:68858495-68858514 | None:intergenic | 45.0% | |
| CATCATGATCCCATTCCTCT+TGG | - | chr3.2:68858090-68858109 | None:intergenic | 45.0% | |
| TATGCTTGGTATGGAGCTAC+TGG | + | chr3.2:68858424-68858443 | MS.gene25964:CDS | 45.0% | |
| TTCACGACCTACTAAAGACG+AGG | + | chr3.2:68858245-68858264 | MS.gene25964:CDS | 45.0% | |
| TTTGCAGCGGTTGAGATTGA+AGG | + | chr3.2:68859693-68859712 | MS.gene25964:intron | 45.0% | |
| ! | ATCAAGTTGTGGCGAAACCT+TGG | - | chr3.2:68859775-68859794 | None:intergenic | 45.0% |
| ! | GAAGCTGTTTCGAAACTTCG+CGG | + | chr3.2:68858382-68858401 | MS.gene25964:CDS | 45.0% |
| ! | GAGGCATTTGATACTGTGCA+GGG | + | chr3.2:68859390-68859409 | MS.gene25964:CDS | 45.0% |
| ! | TGAGGCATTTGATACTGTGC+AGG | + | chr3.2:68859389-68859408 | MS.gene25964:CDS | 45.0% |
| GACGAGGTTTCTTCATGGCT+TGG | + | chr3.2:68858261-68858280 | MS.gene25964:CDS | 50.0% | |
| TCGTTGTCGTTGTTCTTCGC+CGG | - | chr3.2:68858176-68858195 | None:intergenic | 50.0% | |
| TGCGAGACCAACTTCACCTT+CGG | + | chr3.2:68859719-68859738 | MS.gene25964:CDS | 50.0% | |
| TGGGATCATGATGCCAGCAT+CGG | + | chr3.2:68858097-68858116 | MS.gene25964:CDS | 50.0% | |
| ! | AGTTGTGCTGTTGGCAGAGA+TGG | + | chr3.2:68859364-68859383 | MS.gene25964:CDS | 50.0% |
| !! | AAAGGCACCGAAGGTGAAGT+TGG | - | chr3.2:68859729-68859748 | None:intergenic | 50.0% |
| !! | AAAGTCGGAAAAGGCACCGA+AGG | - | chr3.2:68859738-68859757 | None:intergenic | 50.0% |
| ACCGCTTTCGCAGTCGGAAA+CGG | - | chr3.2:68858137-68858156 | None:intergenic | 55.0% | |
| ACCGTTTCCGACTGCGAAAG+CGG | + | chr3.2:68858133-68858152 | MS.gene25964:CDS | 55.0% | |
| GGAAACACCGCTTTCGCAGT+CGG | - | chr3.2:68858143-68858162 | None:intergenic | 55.0% | |
| GTGTTCTGACGCCGTTTCAC+AGG | + | chr3.2:68858330-68858349 | MS.gene25964:CDS | 55.0% | |
| TTGTCGTTGTTCTTCGCCGG+TGG | - | chr3.2:68858173-68858192 | None:intergenic | 55.0% | |
| ! | GCTGTTTCGAAACTTCGCGG+TGG | + | chr3.2:68858385-68858404 | MS.gene25964:CDS | 55.0% |
| CTGTTGGCAGAGATGGCGTG+AGG | + | chr3.2:68859371-68859390 | MS.gene25964:CDS | 60.0% | |
| GCTTTCGCAGTCGGAAACGG+TGG | - | chr3.2:68858134-68858153 | None:intergenic | 60.0% | |
| GGAGGAGTCTTCACCGATGC+TGG | - | chr3.2:68858113-68858132 | None:intergenic | 60.0% | |
| TCGAAGCCGCGCCTGTGAAA+CGG | - | chr3.2:68858344-68858363 | None:intergenic | 60.0% | |
| TCGTTGTTCTTCGCCGGTGG+TGG | - | chr3.2:68858170-68858189 | None:intergenic | 60.0% | |
| TTCGCAGTCGGAAACGGTGG+AGG | - | chr3.2:68858131-68858150 | None:intergenic | 60.0% | |
| ! | TTGTTCTTCGCCGGTGGTGG+TGG | - | chr3.2:68858167-68858186 | None:intergenic | 60.0% |
| CTGACGCCGTTTCACAGGCG+CGG | + | chr3.2:68858335-68858354 | MS.gene25964:CDS | 65.0% | |
| GGTGTTTCCGCCACCACCAC+CGG | + | chr3.2:68858154-68858173 | MS.gene25964:CDS | 65.0% | |
| !! | TTCTTCGCCGGTGGTGGTGG+CGG | - | chr3.2:68858164-68858183 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 68858079 | 68860054 | 68858079 | ID=MS.gene25964 |
| chr3.2 | mRNA | 68858079 | 68860054 | 68858079 | ID=MS.gene25964.t1;Parent=MS.gene25964 |
| chr3.2 | exon | 68858079 | 68858539 | 68858079 | ID=MS.gene25964.t1.exon1;Parent=MS.gene25964.t1 |
| chr3.2 | CDS | 68858079 | 68858539 | 68858079 | ID=cds.MS.gene25964.t1;Parent=MS.gene25964.t1 |
| chr3.2 | exon | 68859357 | 68859595 | 68859357 | ID=MS.gene25964.t1.exon2;Parent=MS.gene25964.t1 |
| chr3.2 | CDS | 68859357 | 68859595 | 68859357 | ID=cds.MS.gene25964.t1;Parent=MS.gene25964.t1 |
| chr3.2 | exon | 68859700 | 68859830 | 68859700 | ID=MS.gene25964.t1.exon3;Parent=MS.gene25964.t1 |
| chr3.2 | CDS | 68859700 | 68859830 | 68859700 | ID=cds.MS.gene25964.t1;Parent=MS.gene25964.t1 |
| chr3.2 | exon | 68859938 | 68860054 | 68859938 | ID=MS.gene25964.t1.exon4;Parent=MS.gene25964.t1 |
| chr3.2 | CDS | 68859938 | 68860054 | 68859938 | ID=cds.MS.gene25964.t1;Parent=MS.gene25964.t1 |
| Gene Sequence |
| Protein sequence |
