Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25992.t1 | AFK39377.1 | 93.7 | 507 | 32 | 0 | 1 | 507 | 1 | 507 | 5.40E-224 | 786.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25992.t1 | P98175 | 37.9 | 95 | 52 | 3 | 409 | 503 | 813 | 900 | 1.2e-06 | 56.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25992.t1 | I3SGI5 | 93.7 | 507 | 32 | 0 | 1 | 507 | 1 | 507 | 3.9e-224 | 786.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050119 | MS.gene25992 | 0.803649 | 3.15E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene25992 | 0.805445 | 1.33E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene25992 | 0.800833 | 1.20E-48 | -1.69E-46 |
| MS.gene054994 | MS.gene25992 | 0.808115 | 3.63E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene25992 | 0.80651 | 7.94E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene25992 | 0.804289 | 2.32E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25992.t1 | MTR_3g077300 | 94.602 | 389 | 21 | 0 | 119 | 507 | 1 | 389 | 0.0 | 734 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25992.t1 | AT4G34140 | 39.619 | 578 | 222 | 14 | 2 | 507 | 5 | 527 | 3.20e-109 | 335 |
| MS.gene25992.t1 | AT4G34140 | 39.515 | 577 | 223 | 14 | 2 | 507 | 5 | 526 | 1.11e-108 | 333 |
| MS.gene25992.t1 | AT4G34140 | 39.446 | 578 | 223 | 14 | 2 | 507 | 5 | 527 | 1.19e-108 | 333 |
| MS.gene25992.t1 | AT4G34140 | 44.972 | 358 | 129 | 8 | 212 | 507 | 9 | 360 | 3.84e-84 | 265 |
| MS.gene25992.t1 | AT4G34140 | 44.972 | 358 | 129 | 8 | 212 | 507 | 36 | 387 | 2.69e-83 | 263 |
| MS.gene25992.t1 | AT4G34140 | 44.847 | 359 | 127 | 8 | 212 | 507 | 36 | 386 | 8.30e-83 | 262 |
| MS.gene25992.t1 | AT4G34140 | 44.568 | 359 | 130 | 8 | 212 | 507 | 9 | 361 | 2.28e-82 | 260 |
| MS.gene25992.t1 | AT4G34140 | 44.568 | 359 | 130 | 8 | 212 | 507 | 36 | 388 | 1.02e-81 | 259 |
| MS.gene25992.t1 | AT4G34140 | 41.033 | 368 | 150 | 7 | 12 | 366 | 14 | 327 | 1.07e-76 | 248 |
| MS.gene25992.t1 | AT4G34140 | 45.201 | 323 | 118 | 6 | 244 | 507 | 25 | 347 | 1.21e-76 | 245 |
Find 129 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATTTGTTGAGTTCTTTC+AGG | 0.164384 | 3.3:-65640336 | None:intergenic |
| CATGCCTTCTAGAAGATTTC+TGG | 0.200653 | 3.3:-65642625 | None:intergenic |
| GCCTCTTCTGTAGCTTCTTC+TGG | 0.265752 | 3.3:-65642570 | None:intergenic |
| CTTATTGATCTATACTTATC+TGG | 0.274374 | 3.3:+65640777 | MS.gene25992:CDS |
| GGTGGCTTTGGTGTTGGTCC+AGG | 0.281454 | 3.3:+65642495 | MS.gene25992:CDS |
| ATAACGATTCTACCTTTGTT+TGG | 0.286937 | 3.3:+65639369 | MS.gene25992:CDS |
| ATGTTTCCAACTGGCTGAAT+AGG | 0.318885 | 3.3:-65643572 | None:intergenic |
| AGTGGAAATACCTTCATCTA+TGG | 0.335384 | 3.3:-65641148 | None:intergenic |
| TAACGATTCTACCTTTGTTT+GGG | 0.351558 | 3.3:+65639370 | MS.gene25992:CDS |
| AACATTGGCAGTGCAGGCTT+GGG | 0.359973 | 3.3:+65643590 | MS.gene25992:CDS |
| ACAGGCCCAGCAGATGAAAA+TGG | 0.380870 | 3.3:+65641006 | MS.gene25992:CDS |
| CTATAGTACCAGCCAGCATT+AGG | 0.390043 | 3.3:-65639664 | None:intergenic |
| TTTCCGAAATTTGAGGTTCT+GGG | 0.393041 | 3.3:-65639346 | None:intergenic |
| TGTACCTTTAGATTGCAATA+AGG | 0.395545 | 3.3:+65639729 | MS.gene25992:CDS |
| CAGTTGTGGACTTGTGGGAC+TGG | 0.396053 | 3.3:+65641584 | MS.gene25992:CDS |
| GAGGCGTTAAAGATGTCATT+TGG | 0.400128 | 3.3:+65642588 | MS.gene25992:CDS |
| TTGTTGAGTTCTTTCAGGTT+TGG | 0.403639 | 3.3:-65640331 | None:intergenic |
| AAACATTGGCAGTGCAGGCT+TGG | 0.407324 | 3.3:+65643589 | MS.gene25992:CDS |
| GGACCCAGAACCTCAAATTT+CGG | 0.413387 | 3.3:+65639343 | MS.gene25992:CDS |
| CTGCCGATCCAACAAAAGAT+TGG | 0.415464 | 3.3:+65642135 | MS.gene25992:CDS |
| GGCAAGGTTGGTTGGAAGAC+TGG | 0.422436 | 3.3:+65641648 | MS.gene25992:CDS |
| GTTTCCAGTTGTGGACTTGT+GGG | 0.427219 | 3.3:+65641579 | MS.gene25992:CDS |
| AGCTTACAGAAATACTGAAA+TGG | 0.427789 | 3.3:+65640969 | MS.gene25992:intron |
| CAGTCCCACAAGTCCACAAC+TGG | 0.428086 | 3.3:-65641583 | None:intergenic |
| CCCGCCCTTGTGCAGGGAGA+AGG | 0.431469 | 3.3:+65643518 | MS.gene25992:intron |
| AGAATCTTGCATGGTGGCTT+TGG | 0.433461 | 3.3:+65642483 | MS.gene25992:CDS |
| AAAAGATAGGGTGGCAAGGT+TGG | 0.437322 | 3.3:+65641636 | MS.gene25992:CDS |
| TGCCGATCCAACAAAAGATT+GGG | 0.443261 | 3.3:+65642136 | MS.gene25992:CDS |
| TACCATTCCGACGGCGGTGG+AGG | 0.443987 | 3.3:-65640665 | None:intergenic |
| GCTTCTTCTGGACAAGCATC+AGG | 0.444285 | 3.3:-65642558 | None:intergenic |
| AGTTTCCAGTTGTGGACTTG+TGG | 0.448878 | 3.3:+65641578 | MS.gene25992:CDS |
| GTTGGAAACATTGGCAGTGC+AGG | 0.451094 | 3.3:+65643584 | MS.gene25992:CDS |
| CTTACCATCCCCTGCTTCCT+CGG | 0.451447 | 3.3:-65640436 | None:intergenic |
| GCTTACAGAAATACTGAAAT+GGG | 0.451792 | 3.3:+65640970 | MS.gene25992:intron |
| GAGGATTGTTCTTCCTTCCT+CGG | 0.454567 | 3.3:+65640375 | MS.gene25992:CDS |
| TATGCCAGAAATCTTCTAGA+AGG | 0.454930 | 3.3:+65642621 | MS.gene25992:CDS |
| CATTGAATCAAGGAAAGATC+TGG | 0.457483 | 3.3:+65641549 | MS.gene25992:CDS |
| CGCAACTTTACTTCCACGCC+AGG | 0.460124 | 3.3:+65639402 | MS.gene25992:CDS |
| GGACTTGTGGGACTGGGAAA+TGG | 0.461025 | 3.3:+65641591 | MS.gene25992:CDS |
| AATCTGGTACGCGTCAAAAC+AGG | 0.461723 | 3.3:+65641754 | MS.gene25992:CDS |
| TTGAGATGTACTTCGCAGAT+AGG | 0.463041 | 3.3:-65641733 | None:intergenic |
| GCACTGCCAATGTTTCCAAC+TGG | 0.470042 | 3.3:-65643581 | None:intergenic |
| GTTTATTACAAATTTGAGGA+TGG | 0.471555 | 3.3:+65639700 | MS.gene25992:CDS |
| TTGCATGGTGGCTTTGGTGT+TGG | 0.471657 | 3.3:+65642489 | MS.gene25992:CDS |
| CGGTCAAGGTTCCTATCTGT+TGG | 0.472224 | 3.3:-65640416 | None:intergenic |
| GTGGCTTTGGTGTTGGTCCA+GGG | 0.472256 | 3.3:+65642496 | MS.gene25992:CDS |
| TTCAATTTCGTTTCCGAGGA+AGG | 0.473128 | 3.3:-65640388 | None:intergenic |
| GATAGGGTGGCAAGGTTGGT+TGG | 0.473323 | 3.3:+65641640 | MS.gene25992:CDS |
| ATCTTCTAGAAGGCATGGGC+TGG | 0.474580 | 3.3:+65642631 | MS.gene25992:CDS |
| GGAACCTTGACCGAGGAAGC+AGG | 0.477060 | 3.3:+65640426 | MS.gene25992:CDS |
| ATTGAAACTAACCAACAGAT+AGG | 0.478031 | 3.3:+65640405 | MS.gene25992:CDS |
| TCCACAAGTTGGACTGTTCG+TGG | 0.482684 | 3.3:-65640639 | None:intergenic |
| GGTCCAGGGCAGAAGAATCT+TGG | 0.483376 | 3.3:+65642510 | MS.gene25992:CDS |
| CTTGTGCAGGGAGAAGGACT+TGG | 0.487602 | 3.3:+65643524 | MS.gene25992:intron |
| CTGCGAAGTACATCTCAATC+TGG | 0.490416 | 3.3:+65641738 | MS.gene25992:CDS |
| ACACCAAGATTCTTCTGCCC+TGG | 0.490581 | 3.3:-65642513 | None:intergenic |
| TTGGCAGTGCAGGCTTGGGG+TGG | 0.496258 | 3.3:+65643594 | MS.gene25992:CDS |
| CAGTTCAACAAAAGGCTTGG+TGG | 0.498063 | 3.3:+65643547 | MS.gene25992:CDS |
| TGGTGTTTATTACAAATTTG+AGG | 0.498375 | 3.3:+65639696 | MS.gene25992:CDS |
| GGACTTGGCAGTTCAACAAA+AGG | 0.504360 | 3.3:+65643539 | MS.gene25992:CDS |
| AGTTGTGGACTTGTGGGACT+GGG | 0.509025 | 3.3:+65641585 | MS.gene25992:CDS |
| AAGTCAGCTTTCTGTATCCA+AGG | 0.510213 | 3.3:+65642271 | MS.gene25992:CDS |
| TTTGTAATAAACACCATCAC+TGG | 0.513294 | 3.3:-65639689 | None:intergenic |
| ATCCCCTGCTTCCTCGGTCA+AGG | 0.516110 | 3.3:-65640430 | None:intergenic |
| ACCCTCCACCGCCGTCGGAA+TGG | 0.516570 | 3.3:+65640663 | MS.gene25992:CDS |
| CCTACCTTATTGCAATCTAA+AGG | 0.519692 | 3.3:-65639733 | None:intergenic |
| ATCATGATCCTAATGCTGGC+TGG | 0.520822 | 3.3:+65639656 | MS.gene25992:CDS |
| TTATATCCATCGGTTTCCAC+GGG | 0.522689 | 3.3:-65640843 | None:intergenic |
| GTTATATCCATCGGTTTCCA+CGG | 0.523283 | 3.3:-65640844 | None:intergenic |
| AACTTCTCATTAGAAGCTGA+TGG | 0.525343 | 3.3:+65640864 | MS.gene25992:CDS |
| CAGAAATCTTCTAGAAGGCA+TGG | 0.525345 | 3.3:+65642626 | MS.gene25992:CDS |
| TGGCAGTTCAACAAAAGGCT+TGG | 0.525531 | 3.3:+65643544 | MS.gene25992:CDS |
| GGATACCATTCCGACGGCGG+TGG | 0.526658 | 3.3:-65640668 | None:intergenic |
| GGAATTTCAGTTGAAGTGGA+AGG | 0.529631 | 3.3:-65642221 | None:intergenic |
| GTGGAACCTATTCAGCCAGT+TGG | 0.535283 | 3.3:+65643566 | MS.gene25992:CDS |
| ATGGGAGGTGACTGGACCAC+AGG | 0.535287 | 3.3:+65640988 | MS.gene25992:CDS |
| ATGGTCAAGTCATTGAATCA+AGG | 0.539010 | 3.3:+65641539 | MS.gene25992:CDS |
| TAATGAGAAGTTATATCCAT+CGG | 0.540938 | 3.3:-65640853 | None:intergenic |
| GAAGCCACATATCTCGCACT+TGG | 0.541343 | 3.3:-65642095 | None:intergenic |
| GATGAAAATCACTTAGCTGA+TGG | 0.548544 | 3.3:+65641120 | MS.gene25992:CDS |
| ATTCAGCCAGTTGGAAACAT+TGG | 0.550272 | 3.3:+65643575 | MS.gene25992:CDS |
| TCTAGAAGGCATGGGCTGGA+AGG | 0.551981 | 3.3:+65642635 | MS.gene25992:CDS |
| ATACTGAAATGGGAGGTGAC+TGG | 0.558400 | 3.3:+65640980 | MS.gene25992:CDS |
| TTTCAACAGAGGAGATAGAT+GGG | 0.558751 | 3.3:-65641693 | None:intergenic |
| ACCATTCCGACGGCGGTGGA+GGG | 0.559175 | 3.3:-65640664 | None:intergenic |
| AGATTTCTGGCATAACTACC+TGG | 0.559707 | 3.3:-65642612 | None:intergenic |
| TTGGATACAGAAAGCTGACT+TGG | 0.564129 | 3.3:-65642269 | None:intergenic |
| GAACCTTGACCGAGGAAGCA+GGG | 0.564978 | 3.3:+65640427 | MS.gene25992:CDS |
| AAACCCAAGTGCGAGATATG+TGG | 0.566437 | 3.3:+65642091 | MS.gene25992:CDS |
| GATGGAAGTTCCATAGATGA+AGG | 0.567701 | 3.3:+65641138 | MS.gene25992:CDS |
| GGTGGAGGGTTTCCACAAGT+TGG | 0.574803 | 3.3:-65640650 | None:intergenic |
| TCCACGAACAGTCCAACTTG+TGG | 0.576946 | 3.3:+65640638 | MS.gene25992:CDS |
| GTGGGTAAATCTTTCGCTGT+AGG | 0.578293 | 3.3:-65642242 | None:intergenic |
| TGGAAACCCTCCACCGCCGT+CGG | 0.581504 | 3.3:+65640658 | MS.gene25992:CDS |
| GATGCTTATCAAGTAGAAGA+AGG | 0.583550 | 3.3:+65641075 | MS.gene25992:CDS |
| TCCAGAAGAAGCTACAGAAG+AGG | 0.585922 | 3.3:+65642569 | MS.gene25992:CDS |
| ACATTGGCAGTGCAGGCTTG+GGG | 0.591205 | 3.3:+65643591 | MS.gene25992:CDS |
| TGTAGGAATTTCAGTTGAAG+TGG | 0.593062 | 3.3:-65642225 | None:intergenic |
| AGAAATCTTCTAGAAGGCAT+GGG | 0.593920 | 3.3:+65642627 | MS.gene25992:CDS |
| AGAAGGCATGGGCTGGAAGG+AGG | 0.595542 | 3.3:+65642638 | MS.gene25992:CDS |
| AAGCCACATATCTCGCACTT+GGG | 0.596356 | 3.3:-65642094 | None:intergenic |
| TAGTTTCAATTTCGTTTCCG+AGG | 0.598650 | 3.3:-65640392 | None:intergenic |
| ATGGAAAAGATAGGGTGGCA+AGG | 0.600283 | 3.3:+65641632 | MS.gene25992:CDS |
| ACAGACCCCGTGGAAACCGA+TGG | 0.614452 | 3.3:+65640837 | MS.gene25992:CDS |
| AACCTTGACCGAGGAAGCAG+GGG | 0.617715 | 3.3:+65640428 | MS.gene25992:CDS |
| TTAAAGATGTCATTTGGACC+AGG | 0.619131 | 3.3:+65642594 | MS.gene25992:CDS |
| GGGCAGAAGAATCTTGGTGT+CGG | 0.634541 | 3.3:+65642516 | MS.gene25992:CDS |
| GAAAGCTGACTTGGCAACGT+GGG | 0.634656 | 3.3:-65642260 | None:intergenic |
| TTGACCGAGGAAGCAGGGGA+TGG | 0.636386 | 3.3:+65640432 | MS.gene25992:CDS |
| ATCAAGTAGAAGAAGGTGAG+TGG | 0.644722 | 3.3:+65641082 | MS.gene25992:CDS |
| AGGTGGAAAAGAACCTGGCG+TGG | 0.644989 | 3.3:-65639415 | None:intergenic |
| AATACAAGACATTAACAATG+AGG | 0.647640 | 3.3:+65640353 | MS.gene25992:CDS |
| AAAAGATGGAAAAGATAGGG+TGG | 0.647950 | 3.3:+65641627 | MS.gene25992:CDS |
| GCTGAAAGAAGAATCTTGCA+TGG | 0.649213 | 3.3:+65642474 | MS.gene25992:CDS |
| TGGTACTATAGCACCAGTGA+TGG | 0.651452 | 3.3:+65639676 | MS.gene25992:CDS |
| TTTATATTAGATGATAACTG+AGG | 0.658562 | 3.3:-65642164 | None:intergenic |
| ACAAGACATTAACAATGAGG+AGG | 0.664360 | 3.3:+65640356 | MS.gene25992:CDS |
| TGAGTGGATTCCAGATCCAG+AGG | 0.665421 | 3.3:+65641098 | MS.gene25992:CDS |
| GTCAGCCTTGTTCATCGACG+AGG | 0.669777 | 3.3:-65643617 | None:intergenic |
| TACAGAAATACTGAAATGGG+AGG | 0.669814 | 3.3:+65640973 | MS.gene25992:CDS |
| GAAGGAGGATACCATTCCGA+CGG | 0.673337 | 3.3:-65640674 | None:intergenic |
| GGAGGATACCATTCCGACGG+CGG | 0.673907 | 3.3:-65640671 | None:intergenic |
| AGAAAGCTGACTTGGCAACG+TGG | 0.688129 | 3.3:-65642261 | None:intergenic |
| ATGTCAATATAGAGATCGCG+CGG | 0.698371 | 3.3:+65642452 | MS.gene25992:CDS |
| GAAAGAAGAATCTTGCATGG+TGG | 0.712797 | 3.3:+65642477 | MS.gene25992:CDS |
| TGGTCAAACAATCTGCAAAG+CGG | 0.722667 | 3.3:+65641668 | MS.gene25992:CDS |
| TATATCCATCGGTTTCCACG+GGG | 0.724216 | 3.3:-65640842 | None:intergenic |
| ACAGATAGGAACCTTGACCG+AGG | 0.745062 | 3.3:+65640419 | MS.gene25992:CDS |
| TGATACAGTGACAGACCCCG+TGG | 0.770896 | 3.3:+65640827 | MS.gene25992:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTATTTTTTTTTTAA+TGG | + | chr3.3:65643473-65643492 | MS.gene25992:intron | 0.0% |
| !! | AATTCAAAATTAAAATTCTT+AGG | + | chr3.3:65642707-65642726 | MS.gene25992:intron | 10.0% |
| !! | ATAAAAAATCAAATTATACA+TGG | - | chr3.3:65641860-65641879 | None:intergenic | 10.0% |
| !! | AAATAGAAAATGTAGAAATT+TGG | + | chr3.3:65643143-65643162 | MS.gene25992:intron | 15.0% |
| !! | ATATAATCATCAATAGAAAA+AGG | - | chr3.3:65640709-65640728 | None:intergenic | 15.0% |
| !! | GTATAGTTCATATAAATATA+GGG | - | chr3.3:65642888-65642907 | None:intergenic | 15.0% |
| !!! | AAATTTCTACATTTTCTATT+TGG | - | chr3.3:65643144-65643163 | None:intergenic | 15.0% |
| !!! | TAAATTTCATTTTAGAATCA+TGG | + | chr3.3:65641909-65641928 | MS.gene25992:intron | 15.0% |
| !!! | TTTTTTATAATGACAAACTT+TGG | + | chr3.3:65643354-65643373 | MS.gene25992:intron | 15.0% |
| !! | AGTTACAATTTATAAGCAAT+AGG | + | chr3.3:65641935-65641954 | MS.gene25992:intron | 20.0% |
| !! | ATAAAAGTTTATAAAAGAGG+AGG | - | chr3.3:65643213-65643232 | None:intergenic | 20.0% |
| !! | ATCAAACATATGAACAAAAT+AGG | - | chr3.3:65641469-65641488 | None:intergenic | 20.0% |
| !! | CATTATTGTATTATTGTACA+TGG | - | chr3.3:65643086-65643105 | None:intergenic | 20.0% |
| !! | GAAATTTACGTATAATAACA+AGG | - | chr3.3:65641897-65641916 | None:intergenic | 20.0% |
| !! | GGTATAGTTCATATAAATAT+AGG | - | chr3.3:65642889-65642908 | None:intergenic | 20.0% |
| !! | GTTACAATTTATAAGCAATA+GGG | + | chr3.3:65641936-65641955 | MS.gene25992:intron | 20.0% |
| !! | TCGATAAAAGTTTATAAAAG+AGG | - | chr3.3:65643216-65643235 | None:intergenic | 20.0% |
| !! | TCTGTTATATATAAGCTAAT+TGG | - | chr3.3:65642785-65642804 | None:intergenic | 20.0% |
| !! | TGTGATAATATTAAAAGATC+TGG | + | chr3.3:65642838-65642857 | MS.gene25992:intron | 20.0% |
| !! | TTTATATTAGATGATAACTG+AGG | - | chr3.3:65642167-65642186 | None:intergenic | 20.0% |
| !! | TTTCAAAATAAAGCTGTATT+GGG | + | chr3.3:65641979-65641998 | MS.gene25992:intron | 20.0% |
| !!! | CAAAAATAGTAATTTCAAGT+TGG | + | chr3.3:65640242-65640261 | MS.gene25992:intron | 20.0% |
| !!! | CAATGGTATAGTTTTTAAAT+AGG | - | chr3.3:65642756-65642775 | None:intergenic | 20.0% |
| !!! | GCAAAATTCACAATTTTTAT+CGG | + | chr3.3:65643433-65643452 | MS.gene25992:intron | 20.0% |
| !!! | TAGGAGTATTCAATAAAATA+CGG | - | chr3.3:65640490-65640509 | None:intergenic | 20.0% |
| !!! | TATAAGTTGAAAACAACATA+TGG | - | chr3.3:65639870-65639889 | None:intergenic | 20.0% |
| !!! | TATTATTCATAAGCTTGTTA+AGG | - | chr3.3:65640114-65640133 | None:intergenic | 20.0% |
| !!! | TGCACATCATAATAATTTTT+TGG | - | chr3.3:65641270-65641289 | None:intergenic | 20.0% |
| ! | AAAAATAAGTCAATCCAAAC+AGG | + | chr3.3:65640177-65640196 | MS.gene25992:intron | 25.0% |
| ! | AATACAAGACATTAACAATG+AGG | + | chr3.3:65640353-65640372 | MS.gene25992:CDS | 25.0% |
| ! | AATACGGTAATAAAGTTTGA+AGG | - | chr3.3:65640474-65640493 | None:intergenic | 25.0% |
| ! | AATTATTATGATGTGCACTA+TGG | + | chr3.3:65641273-65641292 | MS.gene25992:intron | 25.0% |
| ! | ACAGAAAAGTTACATAAGTT+AGG | - | chr3.3:65640896-65640915 | None:intergenic | 25.0% |
| ! | ACTAGATTACTGAATAAACA+AGG | - | chr3.3:65641362-65641381 | None:intergenic | 25.0% |
| ! | ATAAGAGATGTAAATGACTT+AGG | - | chr3.3:65640204-65640223 | None:intergenic | 25.0% |
| ! | ATATATAACAGAATTGCATC+AGG | + | chr3.3:65642793-65642812 | MS.gene25992:intron | 25.0% |
| ! | ATTATTATGATGTGCACTAT+GGG | + | chr3.3:65641274-65641293 | MS.gene25992:intron | 25.0% |
| ! | CAAAAAAGATGGAAAAGATA+GGG | + | chr3.3:65641624-65641643 | MS.gene25992:CDS | 25.0% |
| ! | CTTATTGATCTATACTTATC+TGG | + | chr3.3:65640777-65640796 | MS.gene25992:CDS | 25.0% |
| ! | GGTATACTGCAAAAATAAAT+GGG | + | chr3.3:65641295-65641314 | MS.gene25992:intron | 25.0% |
| ! | GTTTATTACAAATTTGAGGA+TGG | + | chr3.3:65639700-65639719 | MS.gene25992:CDS | 25.0% |
| ! | GTTTCAAAATAAAGCTGTAT+TGG | + | chr3.3:65641978-65641997 | MS.gene25992:intron | 25.0% |
| ! | TAAGAGATGTAAATGACTTA+GGG | - | chr3.3:65640203-65640222 | None:intergenic | 25.0% |
| ! | TAATGAGAAGTTATATCCAT+CGG | - | chr3.3:65640856-65640875 | None:intergenic | 25.0% |
| ! | TAGAAAATGTAGAAATTTGG+AGG | + | chr3.3:65643146-65643165 | MS.gene25992:intron | 25.0% |
| ! | TGGTGTTTATTACAAATTTG+AGG | + | chr3.3:65639696-65639715 | MS.gene25992:CDS | 25.0% |
| ! | TTAAAATTAAGCTAACCAAC+AGG | + | chr3.3:65640742-65640761 | MS.gene25992:intron | 25.0% |
| !! | ATTAAGTTGCTTATCCAAAA+AGG | + | chr3.3:65639964-65639983 | MS.gene25992:intron | 25.0% |
| !! | TATATTGACATTTTATCTGC+TGG | - | chr3.3:65642443-65642462 | None:intergenic | 25.0% |
| !! | TATGTGTTATCTGAAATTTG+AGG | - | chr3.3:65642865-65642884 | None:intergenic | 25.0% |
| !! | TCTAAATTTCTTTTCAACAG+AGG | - | chr3.3:65641707-65641726 | None:intergenic | 25.0% |
| !! | TGTACATGGTTTTTCTTTTT+TGG | - | chr3.3:65643072-65643091 | None:intergenic | 25.0% |
| !! | TGTTTGATTTATACCATTAC+AGG | + | chr3.3:65641481-65641500 | MS.gene25992:intron | 25.0% |
| !! | TTAAGTTGCTTATCCAAAAA+GGG | + | chr3.3:65639965-65639984 | MS.gene25992:intron | 25.0% |
| AAGGTTCAAGTAACTAAGAA+GGG | + | chr3.3:65641329-65641348 | MS.gene25992:intron | 30.0% | |
| AAGTGTTAATGCGTATACAT+TGG | - | chr3.3:65642910-65642929 | None:intergenic | 30.0% | |
| AGCTTACAGAAATACTGAAA+TGG | + | chr3.3:65640969-65640988 | MS.gene25992:intron | 30.0% | |
| ATAACGATTCTACCTTTGTT+TGG | + | chr3.3:65639369-65639388 | MS.gene25992:CDS | 30.0% | |
| ATTGAAACTAACCAACAGAT+AGG | + | chr3.3:65640405-65640424 | MS.gene25992:CDS | 30.0% | |
| ATTTGAACTTATCTATCCAC+TGG | + | chr3.3:65639789-65639808 | MS.gene25992:intron | 30.0% | |
| CCAAAAAAGATGGAAAAGAT+AGG | + | chr3.3:65641623-65641642 | MS.gene25992:CDS | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | + | chr3.3:65643021-65643040 | MS.gene25992:intron | 30.0% | |
| GATGTACTGAATTACATGAA+GGG | - | chr3.3:65642366-65642385 | None:intergenic | 30.0% | |
| GCTTACAGAAATACTGAAAT+GGG | + | chr3.3:65640970-65640989 | MS.gene25992:intron | 30.0% | |
| GGGTATACTGCAAAAATAAA+TGG | + | chr3.3:65641294-65641313 | MS.gene25992:intron | 30.0% | |
| TACAAAGACATCTACTTAGA+AGG | - | chr3.3:65640603-65640622 | None:intergenic | 30.0% | |
| TCATCAATAGAAAAAGGATG+TGG | - | chr3.3:65640703-65640722 | None:intergenic | 30.0% | |
| TCATTCTATCTCTATGTACT+TGG | + | chr3.3:65641234-65641253 | MS.gene25992:intron | 30.0% | |
| TCTTGTTCGAAGAAGAAAAA+TGG | + | chr3.3:65641506-65641525 | MS.gene25992:CDS | 30.0% | |
| TGATGTACTGAATTACATGA+AGG | - | chr3.3:65642367-65642386 | None:intergenic | 30.0% | |
| TGTACCTTTAGATTGCAATA+AGG | + | chr3.3:65639729-65639748 | MS.gene25992:CDS | 30.0% | |
| TTACTCTTGTATTTGCTTAC+TGG | + | chr3.3:65641785-65641804 | MS.gene25992:intron | 30.0% | |
| TTATTAACTTTGTGCAGTAG+TGG | + | chr3.3:65639628-65639647 | MS.gene25992:intron | 30.0% | |
| TTCAAACGTTGTCAAAATGA+AGG | - | chr3.3:65639438-65639457 | None:intergenic | 30.0% | |
| TTTGTAATAAACACCATCAC+TGG | - | chr3.3:65639692-65639711 | None:intergenic | 30.0% | |
| ! | CCTATCTTTTCCATCTTTTT+TGG | - | chr3.3:65641626-65641645 | None:intergenic | 30.0% |
| ! | TAACGATTCTACCTTTGTTT+GGG | + | chr3.3:65639370-65639389 | MS.gene25992:CDS | 30.0% |
| ! | TATTGTCATGCTCTTTTATC+AGG | + | chr3.3:65642050-65642069 | MS.gene25992:intron | 30.0% |
| ! | TGTATTTGTTGAGTTCTTTC+AGG | - | chr3.3:65640339-65640358 | None:intergenic | 30.0% |
| ! | TTTTATCATGATCCTAATGC+TGG | + | chr3.3:65639652-65639671 | MS.gene25992:CDS | 30.0% |
| !! | TCGTTATTTTCCGAAATTTG+AGG | - | chr3.3:65639356-65639375 | None:intergenic | 30.0% |
| !!! | AATTTCTGGTTTTGTTGCAT+AGG | + | chr3.3:65639567-65639586 | MS.gene25992:intron | 30.0% |
| !!! | AGTTTTATTGCTTGTGTTTC+AGG | + | chr3.3:65640272-65640291 | MS.gene25992:intron | 30.0% |
| !!! | GGTTTTTCTTTTTTGGTAGT+GGG | - | chr3.3:65643065-65643084 | None:intergenic | 30.0% |
| !!! | TGGTTTTTCTTTTTTGGTAG+TGG | - | chr3.3:65643066-65643085 | None:intergenic | 30.0% |
| AAAAGATGGAAAAGATAGGG+TGG | + | chr3.3:65641627-65641646 | MS.gene25992:CDS | 35.0% | |
| AAACGTTGTCAAAATGAAGG+TGG | - | chr3.3:65639435-65639454 | None:intergenic | 35.0% | |
| AACTTCTCATTAGAAGCTGA+TGG | + | chr3.3:65640864-65640883 | MS.gene25992:CDS | 35.0% | |
| AAGCTAATTGGCAATGTCAA+TGG | - | chr3.3:65642773-65642792 | None:intergenic | 35.0% | |
| AATCCAAACAGATGCTTAGA+AGG | - | chr3.3:65639764-65639783 | None:intergenic | 35.0% | |
| AATGTTGATGCTCAAAGCAA+AGG | - | chr3.3:65640537-65640556 | None:intergenic | 35.0% | |
| AATTACATGAAGGGTGATCA+TGG | - | chr3.3:65642357-65642376 | None:intergenic | 35.0% | |
| ACAAGACATTAACAATGAGG+AGG | + | chr3.3:65640356-65640375 | MS.gene25992:CDS | 35.0% | |
| ACAAGCTTGTGCTAAATTTC+TGG | + | chr3.3:65639553-65639572 | MS.gene25992:intron | 35.0% | |
| AGATTGCAATAAGGTAGGTT+TGG | + | chr3.3:65639738-65639757 | MS.gene25992:intron | 35.0% | |
| AGTACTTCTTGGAATGAACA+CGG | + | chr3.3:65642025-65642044 | MS.gene25992:intron | 35.0% | |
| AGTGGAAATACCTTCATCTA+TGG | - | chr3.3:65641151-65641170 | None:intergenic | 35.0% | |
| ATGGTCAAGTCATTGAATCA+AGG | + | chr3.3:65641539-65641558 | MS.gene25992:CDS | 35.0% | |
| ATTACATGAAGGGTGATCAT+GGG | - | chr3.3:65642356-65642375 | None:intergenic | 35.0% | |
| CAATAGAAAAAGGATGTGGA+AGG | - | chr3.3:65640699-65640718 | None:intergenic | 35.0% | |
| CAATTTCCAAGTACAAACCT+TGG | - | chr3.3:65642291-65642310 | None:intergenic | 35.0% | |
| CATTGAATCAAGGAAAGATC+TGG | + | chr3.3:65641549-65641568 | MS.gene25992:CDS | 35.0% | |
| CCTACCTTATTGCAATCTAA+AGG | - | chr3.3:65639736-65639755 | None:intergenic | 35.0% | |
| CCTTTAGATTGCAATAAGGT+AGG | + | chr3.3:65639733-65639752 | MS.gene25992:intron | 35.0% | |
| CTAACTCATCCTTACAAAAC+TGG | + | chr3.3:65643169-65643188 | MS.gene25992:intron | 35.0% | |
| CTATTATGAAGTCACATGAG+AGG | + | chr3.3:65641831-65641850 | MS.gene25992:intron | 35.0% | |
| CTTAGTTACTTGAACCTTCA+AGG | - | chr3.3:65641327-65641346 | None:intergenic | 35.0% | |
| CTTATCCAAAAAGGGTCTAA+GGG | + | chr3.3:65639973-65639992 | MS.gene25992:intron | 35.0% | |
| GAAGGTTCAAGTAACTAAGA+AGG | + | chr3.3:65641328-65641347 | MS.gene25992:intron | 35.0% | |
| GATGAAAATCACTTAGCTGA+TGG | + | chr3.3:65641120-65641139 | MS.gene25992:CDS | 35.0% | |
| GATGCTTATCAAGTAGAAGA+AGG | + | chr3.3:65641075-65641094 | MS.gene25992:CDS | 35.0% | |
| TACAGAAATACTGAAATGGG+AGG | + | chr3.3:65640973-65640992 | MS.gene25992:CDS | 35.0% | |
| TAGTTTCAATTTCGTTTCCG+AGG | - | chr3.3:65640395-65640414 | None:intergenic | 35.0% | |
| TATAAGCAATAGGGATAGTG+TGG | + | chr3.3:65641945-65641964 | MS.gene25992:intron | 35.0% | |
| TATGCCAGAAATCTTCTAGA+AGG | + | chr3.3:65642621-65642640 | MS.gene25992:CDS | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | + | chr3.3:65643026-65643045 | MS.gene25992:intron | 35.0% | |
| TGCATAGGTTTATGCATTTG+TGG | + | chr3.3:65639582-65639601 | MS.gene25992:intron | 35.0% | |
| TGTAGGAATTTCAGTTGAAG+TGG | - | chr3.3:65642228-65642247 | None:intergenic | 35.0% | |
| TTCTAAGCATCTGTTTGGAT+TGG | + | chr3.3:65639763-65639782 | MS.gene25992:intron | 35.0% | |
| TTGAATACTCCTATGCTTTG+AGG | + | chr3.3:65640497-65640516 | MS.gene25992:intron | 35.0% | |
| TTTCAACAGAGGAGATAGAT+GGG | - | chr3.3:65641696-65641715 | None:intergenic | 35.0% | |
| ! | AGAAATCTTCTAGAAGGCAT+GGG | + | chr3.3:65642627-65642646 | MS.gene25992:CDS | 35.0% |
| ! | ATCCCAATCTTTTGTTGGAT+CGG | - | chr3.3:65642141-65642160 | None:intergenic | 35.0% |
| ! | GGAAAATCCCAATCTTTTGT+TGG | - | chr3.3:65642146-65642165 | None:intergenic | 35.0% |
| ! | TTAAAGATGTCATTTGGACC+AGG | + | chr3.3:65642594-65642613 | MS.gene25992:CDS | 35.0% |
| ! | TTGCTTTGAGCATCAACATT+TGG | + | chr3.3:65640537-65640556 | MS.gene25992:intron | 35.0% |
| ! | TTTCCGAAATTTGAGGTTCT+GGG | - | chr3.3:65639349-65639368 | None:intergenic | 35.0% |
| ! | TTTTCAACAGAGGAGATAGA+TGG | - | chr3.3:65641697-65641716 | None:intergenic | 35.0% |
| !! | ACAAAACTGGCTTGTAAAGT+GGG | + | chr3.3:65643182-65643201 | MS.gene25992:intron | 35.0% |
| !! | AGACACAAAAGCATTTAGCA+GGG | - | chr3.3:65641397-65641416 | None:intergenic | 35.0% |
| !! | CTTTACAAGCCAGTTTTGTA+AGG | - | chr3.3:65643181-65643200 | None:intergenic | 35.0% |
| !! | TAAATGGGTTGTTTCCTTGA+AGG | + | chr3.3:65641310-65641329 | MS.gene25992:intron | 35.0% |
| !! | TACAAAACTGGCTTGTAAAG+TGG | + | chr3.3:65643181-65643200 | MS.gene25992:intron | 35.0% |
| !! | TTAGTGCTAGAAGTACTTCT+TGG | + | chr3.3:65642014-65642033 | MS.gene25992:intron | 35.0% |
| !! | TTGTTGAGTTCTTTCAGGTT+TGG | - | chr3.3:65640334-65640353 | None:intergenic | 35.0% |
| !! | TTTTCCGAAATTTGAGGTTC+TGG | - | chr3.3:65639350-65639369 | None:intergenic | 35.0% |
| AAGTCAGCTTTCTGTATCCA+AGG | + | chr3.3:65642271-65642290 | MS.gene25992:CDS | 40.0% | |
| AAGTGTGTCTTCTAACCTGT+TGG | - | chr3.3:65640760-65640779 | None:intergenic | 40.0% | |
| AATGAAGGTGGAAAAGAACC+TGG | - | chr3.3:65639423-65639442 | None:intergenic | 40.0% | |
| AGAAAAAGGATGTGGAAGGA+AGG | - | chr3.3:65640695-65640714 | None:intergenic | 40.0% | |
| AGAGTCCTATCTAACTGATG+TGG | + | chr3.3:65643235-65643254 | MS.gene25992:intron | 40.0% | |
| AGCTTGTGTCTACTACTAAC+TGG | + | chr3.3:65641200-65641219 | MS.gene25992:intron | 40.0% | |
| ATCAAGTAGAAGAAGGTGAG+TGG | + | chr3.3:65641082-65641101 | MS.gene25992:CDS | 40.0% | |
| ATCAAGTGTCCTCAAAGCAT+AGG | - | chr3.3:65640509-65640528 | None:intergenic | 40.0% | |
| ATGTCAATATAGAGATCGCG+CGG | + | chr3.3:65642452-65642471 | MS.gene25992:CDS | 40.0% | |
| ATGTTTCCAACTGGCTGAAT+AGG | - | chr3.3:65643575-65643594 | None:intergenic | 40.0% | |
| ATTCAGCCAGTTGGAAACAT+TGG | + | chr3.3:65643575-65643594 | MS.gene25992:CDS | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | + | chr3.3:65643028-65643047 | MS.gene25992:intron | 40.0% | |
| CTGTATCCAAGGTTTGTACT+TGG | + | chr3.3:65642282-65642301 | MS.gene25992:intron | 40.0% | |
| GAAAGAAGAATCTTGCATGG+TGG | + | chr3.3:65642477-65642496 | MS.gene25992:CDS | 40.0% | |
| GAGTCCTATCTAACTGATGT+GGG | + | chr3.3:65643236-65643255 | MS.gene25992:intron | 40.0% | |
| GATGGAAGTTCCATAGATGA+AGG | + | chr3.3:65641138-65641157 | MS.gene25992:CDS | 40.0% | |
| GCAACTCAAATGTCGCAATT+AGG | + | chr3.3:65643277-65643296 | MS.gene25992:intron | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | + | chr3.3:65643027-65643046 | MS.gene25992:intron | 40.0% | |
| GCTGAAAGAAGAATCTTGCA+TGG | + | chr3.3:65642474-65642493 | MS.gene25992:CDS | 40.0% | |
| GCTTATCCAAAAAGGGTCTA+AGG | + | chr3.3:65639972-65639991 | MS.gene25992:intron | 40.0% | |
| GGAATTTCAGTTGAAGTGGA+AGG | - | chr3.3:65642224-65642243 | None:intergenic | 40.0% | |
| TAAATGACTTAGGGCCTGTT+TGG | - | chr3.3:65640194-65640213 | None:intergenic | 40.0% | |
| TAGTCCCACATCAGTTAGAT+AGG | - | chr3.3:65643243-65643262 | None:intergenic | 40.0% | |
| TGCCGATCCAACAAAAGATT+GGG | + | chr3.3:65642136-65642155 | MS.gene25992:CDS | 40.0% | |
| TGGTCAAACAATCTGCAAAG+CGG | + | chr3.3:65641668-65641687 | MS.gene25992:CDS | 40.0% | |
| TTCAATTTCGTTTCCGAGGA+AGG | - | chr3.3:65640391-65640410 | None:intergenic | 40.0% | |
| TTCGAACAAGATGCCTGTAA+TGG | - | chr3.3:65641497-65641516 | None:intergenic | 40.0% | |
| TTGAGATGTACTTCGCAGAT+AGG | - | chr3.3:65641736-65641755 | None:intergenic | 40.0% | |
| TTGGATACAGAAAGCTGACT+TGG | - | chr3.3:65642272-65642291 | None:intergenic | 40.0% | |
| ! | AATGCTTTTGTGTCTCTGCA+TGG | + | chr3.3:65641402-65641421 | MS.gene25992:intron | 40.0% |
| ! | CAGAAATCTTCTAGAAGGCA+TGG | + | chr3.3:65642626-65642645 | MS.gene25992:CDS | 40.0% |
| ! | CATGCCTTCTAGAAGATTTC+TGG | - | chr3.3:65642628-65642647 | None:intergenic | 40.0% |
| ! | GAGGCGTTAAAGATGTCATT+TGG | + | chr3.3:65642588-65642607 | MS.gene25992:CDS | 40.0% |
| ! | GCTAAGTGATTTTCATCCTC+TGG | - | chr3.3:65641117-65641136 | None:intergenic | 40.0% |
| ! | GTCAGAGCATCCAAAAAAGA+TGG | + | chr3.3:65641613-65641632 | MS.gene25992:CDS | 40.0% |
| ! | TACTGGTACACGTCTAAAAC+AGG | + | chr3.3:65641802-65641821 | MS.gene25992:intron | 40.0% |
| ! | TGATTTTCATCCTCTGGATC+TGG | - | chr3.3:65641111-65641130 | None:intergenic | 40.0% |
| !! | AGATTTCTGGCATAACTACC+TGG | - | chr3.3:65642615-65642634 | None:intergenic | 40.0% |
| !! | CAAAACTGGCTTGTAAAGTG+GGG | + | chr3.3:65643183-65643202 | MS.gene25992:intron | 40.0% |
| !! | GACACAAAAGCATTTAGCAG+GGG | - | chr3.3:65641396-65641415 | None:intergenic | 40.0% |
| !! | GAGACACAAAAGCATTTAGC+AGG | - | chr3.3:65641398-65641417 | None:intergenic | 40.0% |
| !! | GTTATATCCATCGGTTTCCA+CGG | - | chr3.3:65640847-65640866 | None:intergenic | 40.0% |
| !! | TTATATCCATCGGTTTCCAC+GGG | - | chr3.3:65640846-65640865 | None:intergenic | 40.0% |
| !!! | GGTTTTAGAGTTTCCAGTTG+TGG | + | chr3.3:65641570-65641589 | MS.gene25992:CDS | 40.0% |
| !!! | TCATGCCATTTTCATCTGCT+GGG | - | chr3.3:65641014-65641033 | None:intergenic | 40.0% |
| AAAAGATAGGGTGGCAAGGT+TGG | + | chr3.3:65641636-65641655 | MS.gene25992:CDS | 45.0% | |
| AAAAGGATGTGGAAGGAAGG+AGG | - | chr3.3:65640692-65640711 | None:intergenic | 45.0% | |
| AAAAGGGTCTAAGGGTCGTT+TGG | + | chr3.3:65639981-65640000 | MS.gene25992:intron | 45.0% | |
| AAACCCAAGTGCGAGATATG+TGG | + | chr3.3:65642091-65642110 | MS.gene25992:CDS | 45.0% | |
| AAGCCACATATCTCGCACTT+GGG | - | chr3.3:65642097-65642116 | None:intergenic | 45.0% | |
| AATCTGGTACGCGTCAAAAC+AGG | + | chr3.3:65641754-65641773 | MS.gene25992:CDS | 45.0% | |
| AATGTCGCAATTAGGCGACT+AGG | + | chr3.3:65643285-65643304 | MS.gene25992:intron | 45.0% | |
| AGAATCTTGCATGGTGGCTT+TGG | + | chr3.3:65642483-65642502 | MS.gene25992:CDS | 45.0% | |
| AGTTTCCAGTTGTGGACTTG+TGG | + | chr3.3:65641578-65641597 | MS.gene25992:CDS | 45.0% | |
| ATACTGAAATGGGAGGTGAC+TGG | + | chr3.3:65640980-65640999 | MS.gene25992:CDS | 45.0% | |
| ATCATGATCCTAATGCTGGC+TGG | + | chr3.3:65639656-65639675 | MS.gene25992:CDS | 45.0% | |
| ATGCAATCTCACTCATGGTG+TGG | - | chr3.3:65641445-65641464 | None:intergenic | 45.0% | |
| ATGGAAAAGATAGGGTGGCA+AGG | + | chr3.3:65641632-65641651 | MS.gene25992:CDS | 45.0% | |
| ATGTCGCAATTAGGCGACTA+GGG | + | chr3.3:65643286-65643305 | MS.gene25992:intron | 45.0% | |
| CAGTTCAACAAAAGGCTTGG+TGG | + | chr3.3:65643547-65643566 | MS.gene25992:CDS | 45.0% | |
| CTATAGTACCAGCCAGCATT+AGG | - | chr3.3:65639667-65639686 | None:intergenic | 45.0% | |
| CTGCCGATCCAACAAAAGAT+TGG | + | chr3.3:65642135-65642154 | MS.gene25992:CDS | 45.0% | |
| CTGCGAAGTACATCTCAATC+TGG | + | chr3.3:65641738-65641757 | MS.gene25992:CDS | 45.0% | |
| GAAAAATGGCGAGCTCAGTA+TGG | + | chr3.3:65641520-65641539 | MS.gene25992:CDS | 45.0% | |
| GAGGATTGTTCTTCCTTCCT+CGG | + | chr3.3:65640375-65640394 | MS.gene25992:CDS | 45.0% | |
| GGACCCAGAACCTCAAATTT+CGG | + | chr3.3:65639343-65639362 | MS.gene25992:CDS | 45.0% | |
| GGACTTGGCAGTTCAACAAA+AGG | + | chr3.3:65643539-65643558 | MS.gene25992:CDS | 45.0% | |
| GTGGGTAAATCTTTCGCTGT+AGG | - | chr3.3:65642245-65642264 | None:intergenic | 45.0% | |
| GTTTCCAGTTGTGGACTTGT+GGG | + | chr3.3:65641579-65641598 | MS.gene25992:CDS | 45.0% | |
| TAGGCATGCAATCTCACTCA+TGG | - | chr3.3:65641450-65641469 | None:intergenic | 45.0% | |
| TAGGGATAGTGTGGCTTACA+TGG | + | chr3.3:65641954-65641973 | MS.gene25992:intron | 45.0% | |
| TCCAGAAGAAGCTACAGAAG+AGG | + | chr3.3:65642569-65642588 | MS.gene25992:CDS | 45.0% | |
| TGAGCTTAGCTCAGTTGGTT+GGG | + | chr3.3:65642999-65643018 | MS.gene25992:intron | 45.0% | |
| TGGCAGTTCAACAAAAGGCT+TGG | + | chr3.3:65643544-65643563 | MS.gene25992:CDS | 45.0% | |
| TGGCCTTCTAAGCATCTGTT+TGG | + | chr3.3:65639758-65639777 | MS.gene25992:intron | 45.0% | |
| TGGTACTATAGCACCAGTGA+TGG | + | chr3.3:65639676-65639695 | MS.gene25992:CDS | 45.0% | |
| ! | AACGACCCTTAGACCCTTTT+TGG | - | chr3.3:65639981-65640000 | None:intergenic | 45.0% |
| ! | CGAGTTTTCGTCCCAAACAA+AGG | - | chr3.3:65639384-65639403 | None:intergenic | 45.0% |
| !! | ACATTTGAGTTGCCTCGTGT+TGG | - | chr3.3:65643270-65643289 | None:intergenic | 45.0% |
| !! | TATATCCATCGGTTTCCACG+GGG | - | chr3.3:65640845-65640864 | None:intergenic | 45.0% |
| !!! | GTCATGCCATTTTCATCTGC+TGG | - | chr3.3:65641015-65641034 | None:intergenic | 45.0% |
| !! | AAAATAATTAAATTATAGAA+TGG | - | chr3.3:65643465-65643484 | None:intergenic | 5.0% |
| AAACATTGGCAGTGCAGGCT+TGG | + | chr3.3:65643589-65643608 | MS.gene25992:CDS | 50.0% | |
| AACATTGGCAGTGCAGGCTT+GGG | + | chr3.3:65643590-65643609 | MS.gene25992:CDS | 50.0% | |
| AAGCTCACGAGGACTGTACA+TGG | - | chr3.3:65642986-65643005 | None:intergenic | 50.0% | |
| AAGGGTGATCATGGGAGAAG+GGG | - | chr3.3:65642348-65642367 | None:intergenic | 50.0% | |
| AAGTCCTTCTCCCTGCACAA+GGG | - | chr3.3:65643525-65643544 | None:intergenic | 50.0% | |
| ACACCAAGATTCTTCTGCCC+TGG | - | chr3.3:65642516-65642535 | None:intergenic | 50.0% | |
| ACAGATAGGAACCTTGACCG+AGG | + | chr3.3:65640419-65640438 | MS.gene25992:CDS | 50.0% | |
| ACAGGCCCAGCAGATGAAAA+TGG | + | chr3.3:65641006-65641025 | MS.gene25992:CDS | 50.0% | |
| AGTGGGCAGAATTTGAACCC+CGG | - | chr3.3:65643048-65643067 | None:intergenic | 50.0% | |
| AGTTGTGGACTTGTGGGACT+GGG | + | chr3.3:65641585-65641604 | MS.gene25992:CDS | 50.0% | |
| CCACTTTGCTCGCAAGTCTA+AGG | + | chr3.3:65641166-65641185 | MS.gene25992:intron | 50.0% | |
| CCTTAGACTTGCGAGCAAAG+TGG | - | chr3.3:65641169-65641188 | None:intergenic | 50.0% | |
| CGGTCAAGGTTCCTATCTGT+TGG | - | chr3.3:65640419-65640438 | None:intergenic | 50.0% | |
| CTAGGGGCAGATCGCAATAA+AGG | + | chr3.3:65643303-65643322 | MS.gene25992:intron | 50.0% | |
| CTCACAAGTGCTTATGCCAG+TGG | - | chr3.3:65639808-65639827 | None:intergenic | 50.0% | |
| GAAGCCACATATCTCGCACT+TGG | - | chr3.3:65642098-65642117 | None:intergenic | 50.0% | |
| GAAGGAGGATACCATTCCGA+CGG | - | chr3.3:65640677-65640696 | None:intergenic | 50.0% | |
| GAAGGGTGATCATGGGAGAA+GGG | - | chr3.3:65642349-65642368 | None:intergenic | 50.0% | |
| GCACTGCCAATGTTTCCAAC+TGG | - | chr3.3:65643584-65643603 | None:intergenic | 50.0% | |
| GCATCAGGTCATCATCACCA+GGG | + | chr3.3:65642808-65642827 | MS.gene25992:intron | 50.0% | |
| GCCTCTTCTGTAGCTTCTTC+TGG | - | chr3.3:65642573-65642592 | None:intergenic | 50.0% | |
| GCTTCTTCTGGACAAGCATC+AGG | - | chr3.3:65642561-65642580 | None:intergenic | 50.0% | |
| GGTCTAAGGGTCGTTTGGAT+TGG | + | chr3.3:65639986-65640005 | MS.gene25992:intron | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+TGG | + | chr3.3:65642998-65643017 | MS.gene25992:intron | 50.0% | |
| GTGGAACCTATTCAGCCAGT+TGG | + | chr3.3:65643566-65643585 | MS.gene25992:CDS | 50.0% | |
| GTTGGAAACATTGGCAGTGC+AGG | + | chr3.3:65643584-65643603 | MS.gene25992:CDS | 50.0% | |
| TCCACGAACAGTCCAACTTG+TGG | + | chr3.3:65640638-65640657 | MS.gene25992:CDS | 50.0% | |
| TGAAGGGTGATCATGGGAGA+AGG | - | chr3.3:65642350-65642369 | None:intergenic | 50.0% | |
| TGCATCAGGTCATCATCACC+AGG | + | chr3.3:65642807-65642826 | MS.gene25992:intron | 50.0% | |
| TGGGACTAAAAGCCAACACG+AGG | + | chr3.3:65643255-65643274 | MS.gene25992:intron | 50.0% | |
| TGTCGCAATTAGGCGACTAG+GGG | + | chr3.3:65643287-65643306 | MS.gene25992:intron | 50.0% | |
| ! | ATCTTCTAGAAGGCATGGGC+TGG | + | chr3.3:65642631-65642650 | MS.gene25992:CDS | 50.0% |
| ! | ATTTTCATCTGCTGGGCCTG+TGG | - | chr3.3:65641007-65641026 | None:intergenic | 50.0% |
| ! | GAGGTATGGACTGAGTTCTC+TGG | + | chr3.3:65642657-65642676 | MS.gene25992:intron | 50.0% |
| ! | GGGCAGAAGAATCTTGGTGT+CGG | + | chr3.3:65642516-65642535 | MS.gene25992:CDS | 50.0% |
| ! | TCCACAAGTTGGACTGTTCG+TGG | - | chr3.3:65640642-65640661 | None:intergenic | 50.0% |
| ! | TGAGTGGATTCCAGATCCAG+AGG | + | chr3.3:65641098-65641117 | MS.gene25992:CDS | 50.0% |
| !! | AGAAAGCTGACTTGGCAACG+TGG | - | chr3.3:65642264-65642283 | None:intergenic | 50.0% |
| !! | GAAAGCTGACTTGGCAACGT+GGG | - | chr3.3:65642263-65642282 | None:intergenic | 50.0% |
| !! | TTGCATGGTGGCTTTGGTGT+TGG | + | chr3.3:65642489-65642508 | MS.gene25992:CDS | 50.0% |
| AACCTTGACCGAGGAAGCAG+GGG | + | chr3.3:65640428-65640447 | MS.gene25992:CDS | 55.0% | |
| ACATTGGCAGTGCAGGCTTG+GGG | + | chr3.3:65643591-65643610 | MS.gene25992:CDS | 55.0% | |
| AGCATTTAGCAGGGGACTCG+AGG | - | chr3.3:65641388-65641407 | None:intergenic | 55.0% | |
| AGGTGGAAAAGAACCTGGCG+TGG | - | chr3.3:65639418-65639437 | None:intergenic | 55.0% | |
| CAAGTCCTTCTCCCTGCACA+AGG | - | chr3.3:65643526-65643545 | None:intergenic | 55.0% | |
| CAGTCCCACAAGTCCACAAC+TGG | - | chr3.3:65641586-65641605 | None:intergenic | 55.0% | |
| CAGTTGTGGACTTGTGGGAC+TGG | + | chr3.3:65641584-65641603 | MS.gene25992:CDS | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr3.3:65642997-65643016 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr3.3:65642994-65643013 | MS.gene25992:intron | 55.0% | |
| CGCAACTTTACTTCCACGCC+AGG | + | chr3.3:65639402-65639421 | MS.gene25992:CDS | 55.0% | |
| CTTACCATCCCCTGCTTCCT+CGG | - | chr3.3:65640439-65640458 | None:intergenic | 55.0% | |
| CTTGTGCAGGGAGAAGGACT+TGG | + | chr3.3:65643524-65643543 | MS.gene25992:intron | 55.0% | |
| GAACCTTGACCGAGGAAGCA+GGG | + | chr3.3:65640427-65640446 | MS.gene25992:CDS | 55.0% | |
| GGACTTGTGGGACTGGGAAA+TGG | + | chr3.3:65641591-65641610 | MS.gene25992:CDS | 55.0% | |
| GGGGCAGATCGCAATAAAGG+CGG | + | chr3.3:65643306-65643325 | MS.gene25992:intron | 55.0% | |
| GGTCCAGGGCAGAAGAATCT+TGG | + | chr3.3:65642510-65642529 | MS.gene25992:CDS | 55.0% | |
| GGTGGAGGGTTTCCACAAGT+TGG | - | chr3.3:65640653-65640672 | None:intergenic | 55.0% | |
| TATTATCACACACCCCGCCC+TGG | - | chr3.3:65642828-65642847 | None:intergenic | 55.0% | |
| TCAGGTCATCATCACCAGGG+CGG | + | chr3.3:65642811-65642830 | MS.gene25992:intron | 55.0% | |
| TGATACAGTGACAGACCCCG+TGG | + | chr3.3:65640827-65640846 | MS.gene25992:CDS | 55.0% | |
| ! | GATAGGGTGGCAAGGTTGGT+TGG | + | chr3.3:65641640-65641659 | MS.gene25992:CDS | 55.0% |
| ! | GGCAAGGTTGGTTGGAAGAC+TGG | + | chr3.3:65641648-65641667 | MS.gene25992:CDS | 55.0% |
| !! | GTGGCTTTGGTGTTGGTCCA+GGG | + | chr3.3:65642496-65642515 | MS.gene25992:CDS | 55.0% |
| !! | TCTAGAAGGCATGGGCTGGA+AGG | + | chr3.3:65642635-65642654 | MS.gene25992:CDS | 55.0% |
| ACAGACCCCGTGGAAACCGA+TGG | + | chr3.3:65640837-65640856 | MS.gene25992:CDS | 60.0% | |
| AGGTCATCATCACCAGGGCG+GGG | + | chr3.3:65642813-65642832 | MS.gene25992:intron | 60.0% | |
| ATCCCCTGCTTCCTCGGTCA+AGG | - | chr3.3:65640433-65640452 | None:intergenic | 60.0% | |
| ATGGGAGGTGACTGGACCAC+AGG | + | chr3.3:65640988-65641007 | MS.gene25992:CDS | 60.0% | |
| CAGGTCATCATCACCAGGGC+GGG | + | chr3.3:65642812-65642831 | MS.gene25992:intron | 60.0% | |
| GGAACCTTGACCGAGGAAGC+AGG | + | chr3.3:65640426-65640445 | MS.gene25992:CDS | 60.0% | |
| GGAGGATACCATTCCGACGG+CGG | - | chr3.3:65640674-65640693 | None:intergenic | 60.0% | |
| TCCTTCTCCCTGCACAAGGG+CGG | - | chr3.3:65643522-65643541 | None:intergenic | 60.0% | |
| TCTGTTCCCGCCCTTGTGCA+GGG | + | chr3.3:65643512-65643531 | MS.gene25992:intron | 60.0% | |
| TTCTGTTCCCGCCCTTGTGC+AGG | + | chr3.3:65643511-65643530 | MS.gene25992:intron | 60.0% | |
| TTGACCGAGGAAGCAGGGGA+TGG | + | chr3.3:65640432-65640451 | MS.gene25992:CDS | 60.0% | |
| !! | AGAAGGCATGGGCTGGAAGG+AGG | + | chr3.3:65642638-65642657 | MS.gene25992:CDS | 60.0% |
| !! | GCATGGGCTGGAAGGAGGTA+TGG | + | chr3.3:65642643-65642662 | MS.gene25992:intron | 60.0% |
| !! | GGTGGCTTTGGTGTTGGTCC+AGG | + | chr3.3:65642495-65642514 | MS.gene25992:CDS | 60.0% |
| ACCATTCCGACGGCGGTGGA+GGG | - | chr3.3:65640667-65640686 | None:intergenic | 65.0% | |
| CCTTCTCCCTGCACAAGGGC+GGG | - | chr3.3:65643521-65643540 | None:intergenic | 65.0% | |
| GGATACCATTCCGACGGCGG+TGG | - | chr3.3:65640671-65640690 | None:intergenic | 65.0% | |
| TACCATTCCGACGGCGGTGG+AGG | - | chr3.3:65640668-65640687 | None:intergenic | 65.0% | |
| TGGAAACCCTCCACCGCCGT+CGG | + | chr3.3:65640658-65640677 | MS.gene25992:CDS | 65.0% | |
| TTGGCAGTGCAGGCTTGGGG+TGG | + | chr3.3:65643594-65643613 | MS.gene25992:CDS | 65.0% | |
| ACCCTCCACCGCCGTCGGAA+TGG | + | chr3.3:65640663-65640682 | MS.gene25992:CDS | 70.0% | |
| CCCGCCCTTGTGCAGGGAGA+AGG | + | chr3.3:65643518-65643537 | MS.gene25992:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 65639341 | 65643628 | 65639341 | ID=MS.gene25992 |
| chr3.3 | mRNA | 65639341 | 65643628 | 65639341 | ID=MS.gene25992.t1;Parent=MS.gene25992 |
| chr3.3 | exon | 65639341 | 65639423 | 65639341 | ID=MS.gene25992.t1.exon1;Parent=MS.gene25992.t1 |
| chr3.3 | CDS | 65639341 | 65639423 | 65639341 | ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1 |
| chr3.3 | exon | 65639645 | 65639750 | 65639645 | ID=MS.gene25992.t1.exon2;Parent=MS.gene25992.t1 |
| chr3.3 | CDS | 65639645 | 65639750 | 65639645 | ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1 |
| chr3.3 | exon | 65640294 | 65640453 | 65640294 | ID=MS.gene25992.t1.exon3;Parent=MS.gene25992.t1 |
| chr3.3 | CDS | 65640294 | 65640453 | 65640294 | ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1 |
| chr3.3 | exon | 65640627 | 65640684 | 65640627 | ID=MS.gene25992.t1.exon4;Parent=MS.gene25992.t1 |
| chr3.3 | CDS | 65640627 | 65640684 | 65640627 | ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1 |
| chr3.3 | exon | 65640764 | 65640885 | 65640764 | ID=MS.gene25992.t1.exon5;Parent=MS.gene25992.t1 |
| chr3.3 | CDS | 65640764 | 65640885 | 65640764 | ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1 |
| chr3.3 | exon | 65640971 | 65641159 | 65640971 | ID=MS.gene25992.t1.exon6;Parent=MS.gene25992.t1 |
| chr3.3 | CDS | 65640971 | 65641159 | 65640971 | ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1 |
| chr3.3 | exon | 65641503 | 65641775 | 65641503 | ID=MS.gene25992.t1.exon7;Parent=MS.gene25992.t1 |
| chr3.3 | CDS | 65641503 | 65641775 | 65641503 | ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1 |
| chr3.3 | exon | 65642072 | 65642292 | 65642072 | ID=MS.gene25992.t1.exon8;Parent=MS.gene25992.t1 |
| chr3.3 | CDS | 65642072 | 65642292 | 65642072 | ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1 |
| chr3.3 | exon | 65642444 | 65642659 | 65642444 | ID=MS.gene25992.t1.exon9;Parent=MS.gene25992.t1 |
| chr3.3 | CDS | 65642444 | 65642659 | 65642444 | ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1 |
| chr3.3 | exon | 65643533 | 65643628 | 65643533 | ID=MS.gene25992.t1.exon10;Parent=MS.gene25992.t1 |
| chr3.3 | CDS | 65643533 | 65643628 | 65643533 | ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1 |
| Gene Sequence |
| Protein sequence |
