AlfalfaGEDB | MS.gene25992

M. sativa cultivar XinJiangDaYe / MS.gene25992

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF01585.26 PF17780.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25992.t1	AFK39377.1	93.7	507	32	0	1	507	1	507	5.40E-224	786.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25992.t1	P98175	37.9	95	52	3	409	503	813	900	1.2e-06	56.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25992.t1	I3SGI5	93.7	507	32	0	1	507	1	507	3.9e-224	786.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050119	MS.gene25992	0.803649	3.15E-49	-1.69E-46
MS.gene053008	MS.gene25992	0.805445	1.33E-49	-1.69E-46
MS.gene054657	MS.gene25992	0.800833	1.20E-48	-1.69E-46
MS.gene054994	MS.gene25992	0.808115	3.63E-50	-1.69E-46
MS.gene055701	MS.gene25992	0.80651	7.94E-50	-1.69E-46
MS.gene055818	MS.gene25992	0.804289	2.32E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25992.t1	MTR_3g077300	94.602	389	21	0	119	507	1	389	0.0	734

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25992.t1	AT4G34140	39.619	578	222	14	2	507	5	527	3.20e-109	335
MS.gene25992.t1	AT4G34140	39.515	577	223	14	2	507	5	526	1.11e-108	333
MS.gene25992.t1	AT4G34140	39.446	578	223	14	2	507	5	527	1.19e-108	333
MS.gene25992.t1	AT4G34140	44.972	358	129	8	212	507	9	360	3.84e-84	265
MS.gene25992.t1	AT4G34140	44.972	358	129	8	212	507	36	387	2.69e-83	263
MS.gene25992.t1	AT4G34140	44.847	359	127	8	212	507	36	386	8.30e-83	262
MS.gene25992.t1	AT4G34140	44.568	359	130	8	212	507	9	361	2.28e-82	260
MS.gene25992.t1	AT4G34140	44.568	359	130	8	212	507	36	388	1.02e-81	259
MS.gene25992.t1	AT4G34140	41.033	368	150	7	12	366	14	327	1.07e-76	248
MS.gene25992.t1	AT4G34140	45.201	323	118	6	244	507	25	347	1.21e-76	245

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Find 129 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATAGGGTGGCAAGGT+TGG	0.437322	3.3:+65641636	MS.gene25992:CDS
AAAAGATGGAAAAGATAGGG+TGG	0.647950	3.3:+65641627	MS.gene25992:CDS
AAACATTGGCAGTGCAGGCT+TGG	0.407324	3.3:+65643589	MS.gene25992:CDS
AAACCCAAGTGCGAGATATG+TGG	0.566437	3.3:+65642091	MS.gene25992:CDS
AACATTGGCAGTGCAGGCTT+GGG	0.359973	3.3:+65643590	MS.gene25992:CDS
AACCTTGACCGAGGAAGCAG+GGG	0.617715	3.3:+65640428	MS.gene25992:CDS
AACTTCTCATTAGAAGCTGA+TGG	0.525343	3.3:+65640864	MS.gene25992:CDS
AAGCCACATATCTCGCACTT+GGG	0.596356	3.3:-65642094	None:intergenic
AAGTCAGCTTTCTGTATCCA+AGG	0.510213	3.3:+65642271	MS.gene25992:CDS
AATACAAGACATTAACAATG+AGG	0.647640	3.3:+65640353	MS.gene25992:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTTCAAGTAACTAAGAA+GGG	+	chr3.3:65641329-65641348	MS.gene25992:intron	30.0%
AAGTGTTAATGCGTATACAT+TGG	-	chr3.3:65642910-65642929	None:intergenic	30.0%
AGCTTACAGAAATACTGAAA+TGG	+	chr3.3:65640969-65640988	MS.gene25992:intron	30.0%
ATAACGATTCTACCTTTGTT+TGG	+	chr3.3:65639369-65639388	MS.gene25992:CDS	30.0%
ATTGAAACTAACCAACAGAT+AGG	+	chr3.3:65640405-65640424	MS.gene25992:CDS	30.0%
ATTTGAACTTATCTATCCAC+TGG	+	chr3.3:65639789-65639808	MS.gene25992:intron	30.0%
CCAAAAAAGATGGAAAAGAT+AGG	+	chr3.3:65641623-65641642	MS.gene25992:CDS	30.0%
GACAATGCATAAAATATGCA+AGG	+	chr3.3:65643021-65643040	MS.gene25992:intron	30.0%
GATGTACTGAATTACATGAA+GGG	-	chr3.3:65642366-65642385	None:intergenic	30.0%
GCTTACAGAAATACTGAAAT+GGG	+	chr3.3:65640970-65640989	MS.gene25992:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	65639341	65643628	65639341	ID=MS.gene25992
chr3.3	mRNA	65639341	65643628	65639341	ID=MS.gene25992.t1;Parent=MS.gene25992
chr3.3	exon	65639341	65639423	65639341	ID=MS.gene25992.t1.exon1;Parent=MS.gene25992.t1
chr3.3	CDS	65639341	65639423	65639341	ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1
chr3.3	exon	65639645	65639750	65639645	ID=MS.gene25992.t1.exon2;Parent=MS.gene25992.t1
chr3.3	CDS	65639645	65639750	65639645	ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1
chr3.3	exon	65640294	65640453	65640294	ID=MS.gene25992.t1.exon3;Parent=MS.gene25992.t1
chr3.3	CDS	65640294	65640453	65640294	ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1
chr3.3	exon	65640627	65640684	65640627	ID=MS.gene25992.t1.exon4;Parent=MS.gene25992.t1
chr3.3	CDS	65640627	65640684	65640627	ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1
chr3.3	exon	65640764	65640885	65640764	ID=MS.gene25992.t1.exon5;Parent=MS.gene25992.t1
chr3.3	CDS	65640764	65640885	65640764	ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1
chr3.3	exon	65640971	65641159	65640971	ID=MS.gene25992.t1.exon6;Parent=MS.gene25992.t1
chr3.3	CDS	65640971	65641159	65640971	ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1
chr3.3	exon	65641503	65641775	65641503	ID=MS.gene25992.t1.exon7;Parent=MS.gene25992.t1
chr3.3	CDS	65641503	65641775	65641503	ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1
chr3.3	exon	65642072	65642292	65642072	ID=MS.gene25992.t1.exon8;Parent=MS.gene25992.t1
chr3.3	CDS	65642072	65642292	65642072	ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1
chr3.3	exon	65642444	65642659	65642444	ID=MS.gene25992.t1.exon9;Parent=MS.gene25992.t1
chr3.3	CDS	65642444	65642659	65642444	ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1
chr3.3	exon	65643533	65643628	65643533	ID=MS.gene25992.t1.exon10;Parent=MS.gene25992.t1
chr3.3	CDS	65643533	65643628	65643533	ID=cds.MS.gene25992.t1;Parent=MS.gene25992.t1

Gene Sequence

>MS.gene25992

ATGGACCCAGAACCTCAAATTTCGGAAAATAACGATTCTACCTTTGTTTGGGACGAAAACTCGCAACTTTACTTCCACGCCAGGTTCTTTTCCACCTTCATTTTGACAACGTTTGAATTTCAATTATTCAACTTGTATGTTTTACATGAAACTATGATTTTTCTGATTTAATTTGCAATGATATTCATTGCATGTGAATCATGAATATAATGACAAGCTTGTGCTAAATTTCTGGTTTTGTTGCATAGGTTTATGCATTTGTGGTTATTAACTTATTTGTTATTTGTTTATTAACTTTGTGCAGTAGTGGATTTTATCATGATCCTAATGCTGGCTGGTACTATAGCACCAGTGATGGTGTTTATTACAAATTTGAGGATGGAAATTATGTACCTTTAGATTGCAATAAGGTAGGTTTGGCCTTCTAAGCATCTGTTTGGATTGGTTTATTTGAACTTATCTATCCACTGGCATAAGCACTTGTGAGACTGTTTGAGAGAACTTTTGAAAACAACTTGTGACATGTCCATATGTTGTTTTCAACTTATACTAGAGAAATTTATGTTTTCTATCTTTTGTTATAGAAATTGCTTATACATAAGCGCTTATGTTATAAGCTTAAAATTAAGTTGCTTATCCAAAAAGGGTCTAAGGGTCGTTTGGATTGGCTTATTTTCAAGCTTATGAAAAATAACTTATGCAAATAAATAAGCTTTTATGTTAATTCGTATGTTAAATTGTATCTTCGTTAGCTGTTTTTTTATAAACTACCTTAACAAGCTTATGAATAATACATAAAAGCTTATATATTTACGTAAGTTGTTTTGCATAAGCTCAAAAATAAGTCAATCCAAACAGGCCCTAAGTCATTTACATCTCTTATTTTCTAAAATAAACTTATCAAAAATAGTAATTTCAAGTTGGTGATTGAAGTTTTATTGCTTGTGTTTCAGGATGATGATGTTGAAGAAATATATGTGTGCAAAGAAACCAAACCTGAAAGAACTCAACAAATACAAGACATTAACAATGAGGAGGATTGTTCTTCCTTCCTCGGAAACGAAATTGAAACTAACCAACAGATAGGAACCTTGACCGAGGAAGCAGGGGATGGTAAGTAATAATGTTAACCTTCAAACTTTATTACCGTATTTTATTGAATACTCCTATGCTTTGAGGACACTTGATTCTCTCCTTTGCTTTGAGCATCAACATTTGGTGTTTCAGTCAAGCAGCAGTATTAATATGAGTAGCTTAAGCCTTCTAAGTAGATGTCTTTGTAATAGATGCAATGAACTCCACGAACAGTCCAACTTGTGGAAACCCTCCACCGCCGTCGGAATGGTATCCTCCTTCCTTCCACATCCTTTTTCTATTGATGATTATATGTTCAAAAAATTCTTAAAATTAAGCTAACCAACAGGTTAGAAGACACACTTATTGATCTATACTTATCTGGCTACAACAACATAGCAGTTAGTGCAGCTGATACAGTGACAGACCCCGTGGAAACCGATGGATATAACTTCTCATTAGAAGCTGATGGTTTGTTCCTAACTTATGTAACTTTTCTGTTAACAAAAGTGATAACTGAGATCGCTCTTAAATGAATGTGTTTCTCAATGTATAGCTTACAGAAATACTGAAATGGGAGGTGACTGGACCACAGGCCCAGCAGATGAAAATGGCATGACTGATAATGAAAAAACTGTAGATGAAATTGTAGCTTACAGCGATGCTTATCAAGTAGAAGAAGGTGAGTGGATTCCAGATCCAGAGGATGAAAATCACTTAGCTGATGGAAGTTCCATAGATGAAGGTATTTCCACTTTGCTCGCAAGTCTAAGGAATCATCTGTAAGCTTGTGTCTACTACTAACTGGCATGTGCTATTTCATTCTATCTCTATGTACTTGGAAGTAGTTTGCCAAAAAATTATTATGATGTGCACTATGGGTATACTGCAAAAATAAATGGGTTGTTTCCTTGAAGGTTCAAGTAACTAAGAAGGGCTTGTTTCCTTGTTTATTCAGTAATCTAGTTTGCCTCGAGTCCCCTGCTAAATGCTTTTGTGTCTCTGCATGGACTTTATAACACTGTTTCCACACCATGAGTGAGATTGCATGCCTATTTTGTTCATATGTTTGATTTATACCATTACAGGCATCTTGTTCGAAGAAGAAAAATGGCGAGCTCAGTATGGTCAAGTCATTGAATCAAGGAAAGATCTGGTTTTAGAGTTTCCAGTTGTGGACTTGTGGGACTGGGAAATGGTCAGAGCATCCAAAAAAGATGGAAAAGATAGGGTGGCAAGGTTGGTTGGAAGACTGGTCAAACAATCTGCAAAGCGGCACCCATCTATCTCCTCTGTTGAAAAGAAATTTAGATCTGCTCCTATCTGCGAAGTACATCTCAATCTGGTACGCGTCAAAACAGGTTTGCATTTTACTCTTGTATTTGCTTACTGGTACACGTCTAAAACAGGATATAGCTATTATGAAGTCACATGAGAGGCAACCATGTATAATTTGATTTTTTATTTTTTTGTTTTAAGCCTTGTTATTATACGTAAATTTCATTTTAGAATCATGGACAAGTTACAATTTATAAGCAATAGGGATAGTGTGGCTTACATGGAGTTTCAAAATAAAGCTGTATTGGGATTTTTCAATATTTAGTGCTAGAAGTACTTCTTGGAATGAACACGGCTTATTGTCATGCTCTTTTATCAGGACAAGTGTATAGATTGCGAAACCCAAGTGCGAGATATGTGGCTTCATTATCAAGTTATGATTCTGCCGATCCAACAAAAGATTGGGATTTTCCTCAGTTATCATCTAATATAAATAGCAATCATGTCTCTAAGTCAAGTCAAAGTACTCCTTCCACTTCAACTGAAATTCCTACAGCGAAAGATTTACCCACGTTGCCAAGTCAGCTTTCTGTATCCAAGGTTTGTACTTGGAAATTGAAATCTATCAGTTAGTTGCTAGTTGCTACTTTTTCCCCTTCTCCCATGATCACCCTTCATGTAATTCAGTACATCAAAAAGATATTTTCAGAATCTGTTAGCTTTCAGCTCATTTACTGTTTTGCAATGCCAGCAGATAAAATGTCAATATAGAGATCGCGCGGCTGAAAGAAGAATCTTGCATGGTGGCTTTGGTGTTGGTCCAGGGCAGAAGAATCTTGGTGTCGGTGATGATACAACATCATTGCCTGATGCTTGTCCAGAAGAAGCTACAGAAGAGGCGTTAAAGATGTCATTTGGACCAGGTAGTTATGCCAGAAATCTTCTAGAAGGCATGGGCTGGAAGGAGGTATGGACTGAGTTCTCTGGTGCAAAATATTTCATTTTTCTTTATTGAATTCAAAATTAAAATTCTTAGGACTATTATATAGTTTAAGTCTTTCCTATTTAAAAACTATACCATTGACATTGCCAATTAGCTTATATATAACAGAATTGCATCAGGTCATCATCACCAGGGCGGGGTGTGTGATAATATTAAAAGATCTGGTCCTCAAATTTCAGATAACACATACCCTATATTTATATGAACTATACCAATGTATACGCATTAACACTTTCTTACTATATTTGTCAAAAAAAAAAAAAAAACAATTTCTTACTATTATTAAACCATGTACAGTCCTCGTGAGCTTAGCTCAGTTGGTTGGGACAATGCATAAAATATGCAAGGTCCGGGGTTCAAATTCTGCCCACTACCAAAAAAGAAAAACCATGTACAATAATACAATAATGTAAAGTATTAGCAGCAGTTAATTTACGCTGCTTATCCAAATAGAAAATGTAGAAATTTGGAGGCTAACTCATCCTTACAAAACTGGCTTGTAAAGTGGGGAGTGCCTCCTCTTTTATAAACTTTTATCGAGAGTCCTATCTAACTGATGTGGGACTAAAAGCCAACACGAGGCAACTCAAATGTCGCAATTAGGCGACTAGGGGCAGATCGCAATAAAGGCGGAATTTCCAACATAAAACAATGTGAATTTTTTATAATGACAAACTTTGGTTATGTTACTTTACACTTTTTTTTTATTTATTTTACATTTTACTCACTTTAGATGAGCAAAATTCACAATTTTTATCGGCAATTACCATTCTATAATTTAATTATTTTTTTTTTAATGGCACTTCACAGATATTTTCTGTTCCCGCCCTTGTGCAGGGAGAAGGACTTGGCAGTTCAACAAAAGGCTTGGTGGAACCTATTCAGCCAGTTGGAAACATTGGCAGTGCAGGCTTGGGGTGGCCTCGTCGATGA

Protein sequence

>MS.gene25992.t1

MDPEPQISENNDSTFVWDENSQLYFHASSGFYHDPNAGWYYSTSDGVYYKFEDGNYVPLDCNKDDDVEEIYVCKETKPERTQQIQDINNEEDCSSFLGNEIETNQQIGTLTEEAGDDAMNSTNSPTCGNPPPPSEWLEDTLIDLYLSGYNNIAVSAADTVTDPVETDGYNFSLEADAYRNTEMGGDWTTGPADENGMTDNEKTVDEIVAYSDAYQVEEGEWIPDPEDENHLADGSSIDEGILFEEEKWRAQYGQVIESRKDLVLEFPVVDLWDWEMVRASKKDGKDRVARLVGRLVKQSAKRHPSISSVEKKFRSAPICEVHLNLVRVKTGQVYRLRNPSARYVASLSSYDSADPTKDWDFPQLSSNINSNHVSKSSQSTPSTSTEIPTAKDLPTLPSQLSVSKQIKCQYRDRAAERRILHGGFGVGPGQKNLGVGDDTTSLPDACPEEATEEALKMSFGPGSYARNLLEGMGWKEGEGLGSSTKGLVEPIQPVGNIGSAGLGWPRR