Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050119.t1 | RHN42374.1 | 96.8 | 443 | 11 | 1 | 27 | 466 | 26 | 468 | 3.30E-228 | 800.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050119.t1 | Q9C918 | 52.3 | 304 | 140 | 3 | 141 | 443 | 8 | 307 | 1.2e-88 | 328.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050119.t1 | A0A396GS89 | 96.8 | 443 | 11 | 1 | 27 | 466 | 26 | 468 | 2.4e-228 | 800.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050119 | MS.gene050680 | 0.800797 | 1.22E-48 | -1.69E-46 |
| MS.gene050119 | MS.gene052611 | 0.821491 | 3.93E-53 | -1.69E-46 |
| MS.gene050119 | MS.gene053565 | 0.802136 | 6.47E-49 | -1.69E-46 |
| MS.gene050119 | MS.gene057060 | 0.818175 | 2.25E-52 | -1.69E-46 |
| MS.gene050119 | MS.gene058979 | 0.822623 | 2.15E-53 | -1.69E-46 |
| MS.gene050119 | MS.gene064462 | 0.812366 | 4.40E-51 | -1.69E-46 |
| MS.gene050119 | MS.gene066264 | 0.811124 | 8.19E-51 | -1.69E-46 |
| MS.gene050119 | MS.gene066320 | 0.800918 | 1.15E-48 | -1.69E-46 |
| MS.gene050119 | MS.gene067566 | 0.805708 | 1.17E-49 | -1.69E-46 |
| MS.gene050119 | MS.gene06797 | 0.808099 | 3.66E-50 | -1.69E-46 |
| MS.gene050119 | MS.gene068385 | 0.805294 | 1.43E-49 | -1.69E-46 |
| MS.gene050119 | MS.gene068526 | 0.832118 | 1.13E-55 | -1.69E-46 |
| MS.gene050119 | MS.gene070695 | 0.807579 | 4.72E-50 | -1.69E-46 |
| MS.gene050119 | MS.gene073008 | 0.820551 | 6.46E-53 | -1.69E-46 |
| MS.gene050119 | MS.gene073853 | 0.826995 | 2.00E-54 | -1.69E-46 |
| MS.gene050119 | MS.gene08318 | 0.907732 | 3.69E-81 | -1.69E-46 |
| MS.gene050119 | MS.gene08319 | 0.849821 | 2.53E-60 | -1.69E-46 |
| MS.gene050119 | MS.gene20809 | 0.804483 | 2.11E-49 | -1.69E-46 |
| MS.gene050119 | MS.gene22731 | 0.800368 | 1.49E-48 | -1.69E-46 |
| MS.gene050119 | MS.gene23304 | 0.802647 | 5.08E-49 | -1.69E-46 |
| MS.gene050119 | MS.gene24067 | 0.832244 | 1.06E-55 | -1.69E-46 |
| MS.gene050119 | MS.gene25992 | 0.803649 | 3.15E-49 | -1.69E-46 |
| MS.gene050119 | MS.gene27971 | 0.80953 | 1.81E-50 | -1.69E-46 |
| MS.gene050119 | MS.gene31180 | 0.809577 | 1.77E-50 | -1.69E-46 |
| MS.gene050119 | MS.gene31802 | 0.832611 | 8.57E-56 | -1.69E-46 |
| MS.gene050119 | MS.gene32361 | 0.824957 | 6.09E-54 | -1.69E-46 |
| MS.gene050119 | MS.gene34233 | 0.824143 | 9.47E-54 | -1.69E-46 |
| MS.gene050119 | MS.gene34931 | 0.906237 | 1.84E-80 | -1.69E-46 |
| MS.gene050119 | MS.gene38276 | 0.835987 | 1.22E-56 | -1.69E-46 |
| MS.gene050119 | MS.gene38287 | 0.838329 | 3.07E-57 | -1.69E-46 |
| MS.gene050119 | MS.gene42645 | 0.817209 | 3.71E-52 | -1.69E-46 |
| MS.gene050119 | MS.gene43430 | 0.808474 | 3.04E-50 | -1.69E-46 |
| MS.gene050119 | MS.gene45467 | 0.814567 | 1.44E-51 | -1.69E-46 |
| MS.gene050119 | MS.gene45933 | 0.810885 | 9.23E-51 | -1.69E-46 |
| MS.gene050119 | MS.gene48723 | 0.804823 | 1.79E-49 | -1.69E-46 |
| MS.gene050119 | MS.gene49166 | 0.800142 | 1.66E-48 | -1.69E-46 |
| MS.gene050119 | MS.gene51459 | 0.804612 | 1.99E-49 | -1.69E-46 |
| MS.gene050119 | MS.gene59336 | 0.808449 | 3.08E-50 | -1.69E-46 |
| MS.gene050119 | MS.gene60206 | 0.808171 | 3.53E-50 | -1.69E-46 |
| MS.gene050119 | MS.gene60631 | 0.834116 | 3.61E-56 | -1.69E-46 |
| MS.gene050119 | MS.gene60690 | 0.807949 | 3.94E-50 | -1.69E-46 |
| MS.gene050119 | MS.gene67346 | 0.808705 | 2.72E-50 | -1.69E-46 |
| MS.gene050119 | MS.gene70657 | 0.802217 | 6.23E-49 | -1.69E-46 |
| MS.gene050119 | MS.gene75490 | 0.806864 | 6.69E-50 | -1.69E-46 |
| MS.gene050119 | MS.gene76270 | 0.805108 | 1.57E-49 | -1.69E-46 |
| MS.gene050119 | MS.gene76916 | 0.821507 | 3.89E-53 | -1.69E-46 |
| MS.gene050119 | MS.gene85663 | 0.803835 | 2.88E-49 | -1.69E-46 |
| MS.gene050119 | MS.gene96210 | 0.80251 | 5.42E-49 | -1.69E-46 |
| MS.gene050119 | MS.gene96246 | 0.812694 | 3.73E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050119.t1 | MTR_0332s0040 | 90.809 | 272 | 21 | 2 | 195 | 466 | 165 | 432 | 1.58e-180 | 512 |
| MS.gene050119.t1 | MTR_1g092460 | 55.556 | 306 | 128 | 3 | 146 | 451 | 134 | 431 | 4.35e-116 | 348 |
| MS.gene050119.t1 | MTR_0274s0030 | 52.649 | 302 | 133 | 3 | 146 | 447 | 71 | 362 | 1.76e-110 | 331 |
| MS.gene050119.t1 | MTR_8g060700 | 53.145 | 318 | 144 | 3 | 121 | 438 | 435 | 747 | 8.19e-107 | 334 |
| MS.gene050119.t1 | MTR_2g079270 | 49.425 | 348 | 144 | 7 | 115 | 439 | 215 | 553 | 8.04e-105 | 325 |
| MS.gene050119.t1 | MTR_7g023760 | 50.530 | 283 | 123 | 3 | 145 | 427 | 47 | 312 | 7.98e-91 | 279 |
| MS.gene050119.t1 | MTR_4g088835 | 57.576 | 231 | 97 | 1 | 158 | 387 | 638 | 868 | 1.64e-90 | 295 |
| MS.gene050119.t1 | MTR_2g013650 | 49.470 | 283 | 127 | 3 | 158 | 436 | 649 | 919 | 4.57e-90 | 293 |
| MS.gene050119.t1 | MTR_1g112730 | 50.179 | 279 | 132 | 4 | 159 | 437 | 828 | 1099 | 1.74e-88 | 292 |
| MS.gene050119.t1 | MTR_1g092440 | 43.787 | 338 | 137 | 4 | 146 | 436 | 293 | 624 | 6.47e-88 | 281 |
| MS.gene050119.t1 | MTR_8g060700 | 58.475 | 236 | 95 | 2 | 121 | 356 | 435 | 667 | 1.09e-85 | 276 |
| MS.gene050119.t1 | MTR_8g060700 | 58.475 | 236 | 95 | 2 | 121 | 356 | 435 | 667 | 2.55e-85 | 276 |
| MS.gene050119.t1 | MTR_1g092465 | 48.421 | 285 | 114 | 4 | 103 | 384 | 175 | 429 | 3.16e-84 | 266 |
| MS.gene050119.t1 | MTR_4g020620 | 54.741 | 232 | 97 | 1 | 158 | 389 | 604 | 827 | 1.38e-83 | 275 |
| MS.gene050119.t1 | MTR_7g047570 | 47.842 | 278 | 136 | 5 | 161 | 431 | 7 | 282 | 3.65e-81 | 254 |
| MS.gene050119.t1 | MTR_7g451770 | 47.842 | 278 | 136 | 5 | 161 | 431 | 7 | 282 | 3.65e-81 | 254 |
| MS.gene050119.t1 | MTR_2g018540 | 51.037 | 241 | 93 | 4 | 150 | 387 | 87 | 305 | 3.73e-78 | 247 |
| MS.gene050119.t1 | MTR_7g451800 | 46.570 | 277 | 139 | 5 | 162 | 431 | 8 | 282 | 1.56e-76 | 243 |
| MS.gene050119.t1 | MTR_7g047620 | 46.570 | 277 | 139 | 5 | 162 | 431 | 8 | 282 | 1.56e-76 | 243 |
| MS.gene050119.t1 | MTR_4g020620 | 56.281 | 199 | 79 | 1 | 158 | 356 | 546 | 736 | 1.08e-72 | 244 |
| MS.gene050119.t1 | MTR_4g007210 | 41.346 | 312 | 162 | 5 | 134 | 436 | 26 | 325 | 1.91e-72 | 234 |
| MS.gene050119.t1 | MTR_2g079280 | 45.600 | 250 | 106 | 3 | 146 | 395 | 81 | 300 | 2.60e-68 | 221 |
| MS.gene050119.t1 | MTR_4g086440 | 53.886 | 193 | 88 | 1 | 191 | 383 | 37 | 228 | 3.83e-68 | 220 |
| MS.gene050119.t1 | MTR_1g092490 | 52.709 | 203 | 93 | 2 | 236 | 437 | 55 | 255 | 1.97e-65 | 212 |
| MS.gene050119.t1 | MTR_8g071040 | 30.894 | 123 | 75 | 3 | 190 | 312 | 3 | 115 | 4.68e-11 | 61.2 |
| MS.gene050119.t1 | MTR_1g021150 | 29.787 | 141 | 88 | 4 | 190 | 329 | 3 | 133 | 4.77e-11 | 61.2 |
| MS.gene050119.t1 | MTR_7g116940 | 30.233 | 129 | 75 | 3 | 190 | 312 | 3 | 122 | 6.27e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050119.t1 | AT1G53025 | 52.632 | 304 | 137 | 3 | 143 | 443 | 225 | 524 | 3.90e-109 | 333 |
| MS.gene050119.t1 | AT1G53025 | 52.632 | 304 | 137 | 3 | 143 | 443 | 225 | 524 | 6.91e-109 | 333 |
| MS.gene050119.t1 | AT3G15355 | 55.682 | 264 | 113 | 2 | 159 | 422 | 305 | 564 | 7.28e-101 | 314 |
| MS.gene050119.t1 | AT1G53023 | 50.836 | 299 | 124 | 4 | 143 | 431 | 2 | 287 | 2.20e-99 | 301 |
| MS.gene050119.t1 | AT2G16920 | 42.659 | 361 | 191 | 7 | 84 | 437 | 746 | 1097 | 6.34e-88 | 291 |
| MS.gene050119.t1 | AT2G16920 | 42.659 | 361 | 191 | 7 | 84 | 437 | 746 | 1097 | 6.34e-88 | 291 |
| MS.gene050119.t1 | AT2G33770 | 48.410 | 283 | 138 | 2 | 158 | 440 | 632 | 906 | 1.84e-86 | 284 |
| MS.gene050119.t1 | AT5G05080 | 32.812 | 128 | 74 | 4 | 186 | 313 | 8 | 123 | 1.56e-12 | 67.8 |
| MS.gene050119.t1 | AT5G05080 | 32.812 | 128 | 74 | 4 | 186 | 313 | 8 | 123 | 1.56e-12 | 67.8 |
| MS.gene050119.t1 | AT5G05080 | 32.812 | 128 | 74 | 4 | 186 | 313 | 8 | 123 | 1.56e-12 | 67.8 |
| MS.gene050119.t1 | AT5G05080 | 32.812 | 128 | 74 | 4 | 186 | 313 | 8 | 123 | 1.56e-12 | 67.8 |
| MS.gene050119.t1 | AT5G41700 | 30.872 | 149 | 91 | 5 | 190 | 336 | 3 | 141 | 8.67e-12 | 63.5 |
| MS.gene050119.t1 | AT3G08690 | 30.556 | 144 | 89 | 4 | 190 | 332 | 3 | 136 | 4.28e-11 | 61.2 |
| MS.gene050119.t1 | AT3G08690 | 30.556 | 144 | 89 | 4 | 190 | 332 | 3 | 136 | 4.28e-11 | 61.2 |
Find 101 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCATTATTGTATAAATT+TGG | 0.145429 | 4.4:-17374940 | None:intergenic |
| AATCTAGGATGGAGCTTATT+AGG | 0.145484 | 4.4:+17374709 | MS.gene050119:CDS |
| TGTAGCATGGTTGATTTATC+TGG | 0.257661 | 4.4:-17375018 | None:intergenic |
| CTTCTGTTGCCAGGATGCTT+TGG | 0.314493 | 4.4:+17373665 | MS.gene050119:intron |
| AATCCAAATTTATACAATAA+TGG | 0.333342 | 4.4:+17374937 | MS.gene050119:CDS |
| CTTGACGACGACGCCAGAAT+TGG | 0.336149 | 4.4:-17372597 | None:intergenic |
| AAAGTATGCCTTAGTCTCTT+AGG | 0.344468 | 4.4:+17374961 | MS.gene050119:CDS |
| TTTCGAACTGGACTCTGAAT+TGG | 0.355051 | 4.4:-17374006 | None:intergenic |
| CAGCCTGGGACCTTCACACC+TGG | 0.359549 | 4.4:-17377031 | None:intergenic |
| GACAATGTGGATTTGCCTCC+GGG | 0.372987 | 4.4:+17373924 | MS.gene050119:CDS |
| TGCCAGGATGCTTTGGTCCC+TGG | 0.386858 | 4.4:+17373672 | MS.gene050119:intron |
| TTGCGGGACACTTCCGCCTA+AGG | 0.390892 | 4.4:+17376724 | MS.gene050119:CDS |
| TGTATACATCATTGTCTTCA+AGG | 0.393420 | 4.4:-17375175 | None:intergenic |
| ACTAGCATTACGACTACTTT+GGG | 0.394996 | 4.4:-17376820 | None:intergenic |
| TGCTGCTGCTACTGCTAACT+TGG | 0.399297 | 4.4:+17376977 | MS.gene050119:CDS |
| TGTATTATCATTGTAATCCT+TGG | 0.400389 | 4.4:-17375142 | None:intergenic |
| GGAACTGCAGGGTACTTTGC+AGG | 0.401038 | 4.4:-17374798 | None:intergenic |
| CACTAGCATTACGACTACTT+TGG | 0.405676 | 4.4:-17376821 | None:intergenic |
| ATGGTAAGAACTGCGAAAAC+TGG | 0.416419 | 4.4:+17374992 | MS.gene050119:CDS |
| ATCTACTTCAGCTTTCGAAC+TGG | 0.417449 | 4.4:-17374018 | None:intergenic |
| ATCTTATCATAATGATGATC+AGG | 0.419705 | 4.4:-17374107 | None:intergenic |
| ATCTAGGATGGAGCTTATTA+GGG | 0.420392 | 4.4:+17374710 | MS.gene050119:CDS |
| TCAATGTCACTGAATTCAAT+TGG | 0.421474 | 4.4:+17373759 | MS.gene050119:CDS |
| AATTTCAGGCAGCTGTGAAT+AGG | 0.427761 | 4.4:+17376865 | MS.gene050119:CDS |
| TTGACGACGACGCCAGAATT+GGG | 0.428770 | 4.4:-17372596 | None:intergenic |
| ATCAACCATGCTACAAGTCT+TGG | 0.437396 | 4.4:+17375026 | MS.gene050119:CDS |
| ATGCAGTCATGCAAAAGTTT+CGG | 0.439516 | 4.4:+17374051 | MS.gene050119:CDS |
| GATCATCATTATGATAAGAT+AGG | 0.441368 | 4.4:+17374110 | MS.gene050119:CDS |
| TGACAATGTGGATTTGCCTC+CGG | 0.442691 | 4.4:+17373923 | MS.gene050119:CDS |
| TCTTACAGCGACCAAAGAAC+TGG | 0.445315 | 4.4:+17374249 | MS.gene050119:intron |
| TTGTGAGAGTTTGTGAATCT+AGG | 0.448277 | 4.4:+17374694 | MS.gene050119:CDS |
| TCAGTATGTTCCTCGCCCTT+AGG | 0.453082 | 4.4:-17376740 | None:intergenic |
| TTATGTAAAACTTCTCCAAC+TGG | 0.453968 | 4.4:-17376792 | None:intergenic |
| AGCATCAGTGCCTTGGTTGA+AGG | 0.462539 | 4.4:+17373953 | MS.gene050119:CDS |
| ACGAAAACAAGAGGAAGAGC+AGG | 0.482338 | 4.4:+17372622 | MS.gene050119:CDS |
| CTCATAGAATTTCCATGACC+AGG | 0.487258 | 4.4:-17373690 | None:intergenic |
| GGAGTTATATTATAAATCTC+AGG | 0.487573 | 4.4:-17376954 | None:intergenic |
| ATGAGTGTCGGAGAATCATC+TGG | 0.492477 | 4.4:+17373708 | MS.gene050119:CDS |
| TAATAGTCAGAGCCATCGTC+AGG | 0.495284 | 4.4:-17373849 | None:intergenic |
| GCTGTCATCGTTGGACCTCT+AGG | 0.497159 | 4.4:+17374732 | MS.gene050119:CDS |
| GATGCTTTGGTCCCTGGTCA+TGG | 0.499453 | 4.4:+17373678 | MS.gene050119:CDS |
| CTTATTAGGGCTGTCATCGT+TGG | 0.504437 | 4.4:+17374723 | MS.gene050119:CDS |
| CGATATGACTCAGCATATCC+AGG | 0.506421 | 4.4:-17375096 | None:intergenic |
| GACACTTCCGCCTAAGGGCG+AGG | 0.508128 | 4.4:+17376730 | MS.gene050119:CDS |
| ATACATACCGGTGGAACTGC+AGG | 0.508289 | 4.4:-17374810 | None:intergenic |
| CCCGCAACAAAGTCCTCAAA+AGG | 0.519018 | 4.4:-17376708 | None:intergenic |
| TCGAAATTCTTCGCAGTCTG+TGG | 0.527632 | 4.4:-17376928 | None:intergenic |
| AGCCTGGGACCTTCACACCT+GGG | 0.528732 | 4.4:-17377030 | None:intergenic |
| GGCACTGATGCTTCTACCCC+CGG | 0.533051 | 4.4:-17373942 | None:intergenic |
| AAGTTAGCAGTAGCAGCAGC+AGG | 0.536604 | 4.4:-17376975 | None:intergenic |
| GCCACGTACCTAAGAGACTA+AGG | 0.539509 | 4.4:-17374969 | None:intergenic |
| TGCTTCAGCCGCAGAGACAC+AGG | 0.549616 | 4.4:+17374133 | MS.gene050119:CDS |
| TGCGGGACACTTCCGCCTAA+GGG | 0.551421 | 4.4:+17376725 | MS.gene050119:CDS |
| TTCATTTCACAACGATGATG+AGG | 0.553115 | 4.4:+17373797 | MS.gene050119:CDS |
| ATCGTGCTGATGAGGGGCAA+AGG | 0.554509 | 4.4:+17375115 | MS.gene050119:CDS |
| TACACTGCGTAAACCACCTA+AGG | 0.559413 | 4.4:+17375194 | MS.gene050119:CDS |
| GAAGAAAAGACCGTCATGGT+AGG | 0.560934 | 4.4:-17374760 | None:intergenic |
| GGGTAGAAGCATCAGTGCCT+TGG | 0.561597 | 4.4:+17373946 | MS.gene050119:CDS |
| CAGCAAGTTTACTACCACTC+AGG | 0.569662 | 4.4:+17374901 | MS.gene050119:intron |
| AAGAAAAGACCGTCATGGTA+GGG | 0.570573 | 4.4:-17374759 | None:intergenic |
| TGACGACGACGCCAGAATTG+GGG | 0.572784 | 4.4:-17372595 | None:intergenic |
| ACTACCACTCAGGTGGCTTG+AGG | 0.574664 | 4.4:+17374911 | MS.gene050119:CDS |
| AAAGTACCCTGCAGTTCCAC+CGG | 0.575597 | 4.4:+17374803 | MS.gene050119:CDS |
| GTCGGAGAATCATCTGGTAG+TGG | 0.576524 | 4.4:+17373714 | MS.gene050119:CDS |
| CATTCGACATCCTTCAACCA+AGG | 0.582609 | 4.4:-17373963 | None:intergenic |
| GAGTCATATCGTGCTGATGA+GGG | 0.583830 | 4.4:+17375108 | MS.gene050119:CDS |
| TTTATGGGACGAACCTTAGG+TGG | 0.584837 | 4.4:-17375207 | None:intergenic |
| GTATGTTCCTCGCCCTTAGG+CGG | 0.590897 | 4.4:-17376737 | None:intergenic |
| GATGTCGAATGCAAGCCGGC+TGG | 0.593939 | 4.4:+17373975 | MS.gene050119:CDS |
| GCAGGATCAATTTGACAATG+TGG | 0.594867 | 4.4:+17373911 | MS.gene050119:CDS |
| GAGAGTTTGTGAATCTAGGA+TGG | 0.598904 | 4.4:+17374698 | MS.gene050119:CDS |
| TTGTAGATCATATGCTGAGG+GGG | 0.600786 | 4.4:+17376767 | MS.gene050119:CDS |
| GAAGGATGTCGAATGCAAGC+CGG | 0.603924 | 4.4:+17373971 | MS.gene050119:CDS |
| CAATGTGGATTTGCCTCCGG+GGG | 0.605131 | 4.4:+17373926 | MS.gene050119:CDS |
| GCTTGTAGATCATATGCTGA+GGG | 0.605567 | 4.4:+17376765 | MS.gene050119:CDS |
| CATGGAAATTCTATGAGTGT+CGG | 0.608315 | 4.4:+17373696 | MS.gene050119:CDS |
| CGTCAAGAAACGAAAACAAG+AGG | 0.608319 | 4.4:+17372613 | MS.gene050119:CDS |
| AGCTTGTAGATCATATGCTG+AGG | 0.609426 | 4.4:+17376764 | MS.gene050119:CDS |
| ACAACATAACCCAGGTGTGA+AGG | 0.612629 | 4.4:+17377021 | MS.gene050119:CDS |
| GACGACGACGCCAGAATTGG+GGG | 0.621069 | 4.4:-17372594 | None:intergenic |
| CAAAGAAGAAAAGACCGTCA+TGG | 0.627963 | 4.4:-17374764 | None:intergenic |
| TGAGGGGCAAAGGAGATCCA+AGG | 0.628352 | 4.4:+17375125 | MS.gene050119:CDS |
| AGTCATATCGTGCTGATGAG+GGG | 0.629146 | 4.4:+17375109 | MS.gene050119:CDS |
| CAAGTTTACTACCACTCAGG+TGG | 0.636743 | 4.4:+17374904 | MS.gene050119:CDS |
| AGTCTCTTAGGTACGTGGCA+TGG | 0.640884 | 4.4:+17374973 | MS.gene050119:CDS |
| AGAAACCAAGACTTGTAGCA+TGG | 0.645266 | 4.4:-17375031 | None:intergenic |
| CTAGGCACTCCCTACCATGA+CGG | 0.653137 | 4.4:+17374750 | MS.gene050119:CDS |
| TACATACCGGTGGAACTGCA+GGG | 0.654447 | 4.4:-17374809 | None:intergenic |
| ACAATGTGGATTTGCCTCCG+GGG | 0.658182 | 4.4:+17373925 | MS.gene050119:CDS |
| GCCTTAGTCTCTTAGGTACG+TGG | 0.660014 | 4.4:+17374968 | MS.gene050119:CDS |
| TGAGTCATATCGTGCTGATG+AGG | 0.660537 | 4.4:+17375107 | MS.gene050119:CDS |
| TCATAGAATTTCCATGACCA+GGG | 0.666561 | 4.4:-17373689 | None:intergenic |
| ATATATCACCTGTGTCTCTG+CGG | 0.668995 | 4.4:-17374141 | None:intergenic |
| CTCTGACTATTACGACGATG+AGG | 0.674543 | 4.4:+17373860 | MS.gene050119:CDS |
| TCATGGTAGGGAGTGCCTAG+AGG | 0.675357 | 4.4:-17374747 | None:intergenic |
| TGTAGATCATATGCTGAGGG+GGG | 0.684377 | 4.4:+17376768 | MS.gene050119:CDS |
| GCACTTGAAGATCCTGACGA+TGG | 0.700157 | 4.4:+17373837 | MS.gene050119:CDS |
| AGAGAACAACAACATAACCC+AGG | 0.704469 | 4.4:+17377013 | MS.gene050119:CDS |
| CTTGTAGATCATATGCTGAG+GGG | 0.711409 | 4.4:+17376766 | MS.gene050119:CDS |
| GAATTGGCATGAGAACCAGC+CGG | 0.715276 | 4.4:-17373990 | None:intergenic |
| TTAGCCTCAAGCCACCTGAG+TGG | 0.718697 | 4.4:-17374915 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATTAGTAATATTAATTA+GGG | + | chr4.4:17375814-17375833 | MS.gene050119:intron | 10.0% |
| !! | GAACTTATAAATTAATATAA+AGG | - | chr4.4:17375336-17375355 | None:intergenic | 10.0% |
| !! | GTAATTGATTATAAATATTA+TGG | - | chr4.4:17376000-17376019 | None:intergenic | 10.0% |
| !! | TTAACATATATTAAGAAAAT+TGG | + | chr4.4:17375698-17375717 | MS.gene050119:intron | 10.0% |
| !! | AAAAATAAAAATGATACTGA+GGG | - | chr4.4:17375588-17375607 | None:intergenic | 15.0% |
| !! | AAAATAAAAATAAAAGGCAA+AGG | - | chr4.4:17374445-17374464 | None:intergenic | 15.0% |
| !! | AATCCAAATTTATACAATAA+TGG | + | chr4.4:17374937-17374956 | MS.gene050119:CDS | 15.0% |
| !! | ACTAAATTACCAAAATAATA+AGG | - | chr4.4:17374605-17374624 | None:intergenic | 15.0% |
| !! | GCATATTAGTAATATTAATT+AGG | + | chr4.4:17375813-17375832 | MS.gene050119:intron | 15.0% |
| !! | TAAAAATAAAAATGATACTG+AGG | - | chr4.4:17375589-17375608 | None:intergenic | 15.0% |
| !! | TTAATACATCTATACATAAA+GGG | - | chr4.4:17375770-17375789 | None:intergenic | 15.0% |
| !! | TTTAATACATCTATACATAA+AGG | - | chr4.4:17375771-17375790 | None:intergenic | 15.0% |
| !! | TTTCCATTATTGTATAAATT+TGG | - | chr4.4:17374943-17374962 | None:intergenic | 15.0% |
| !!! | AGAACTAAATATTGTTTTAT+GGG | - | chr4.4:17375225-17375244 | None:intergenic | 15.0% |
| !!! | AGTTTTGTTTTAATAGTTTA+AGG | + | chr4.4:17375251-17375270 | MS.gene050119:intron | 15.0% |
| !!! | ATTAATAATTGAAGCAATTT+TGG | - | chr4.4:17376451-17376470 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTAGTTTTGTCAA+TGG | + | chr4.4:17374460-17374479 | MS.gene050119:intron | 15.0% |
| !!! | GTTTATAAAGATACAATTTT+CGG | - | chr4.4:17375365-17375384 | None:intergenic | 15.0% |
| !!! | GTTTTGTTTTAATAGTTTAA+GGG | + | chr4.4:17375252-17375271 | MS.gene050119:intron | 15.0% |
| !!! | TAAATTTATGCTGATTTATT+GGG | + | chr4.4:17373493-17373512 | MS.gene050119:intron | 15.0% |
| !!! | TACATTCTTAAAAATACTTT+TGG | + | chr4.4:17374495-17374514 | MS.gene050119:intron | 15.0% |
| !! | AATTAATTATTTCAGACTCT+AGG | + | chr4.4:17376572-17376591 | MS.gene050119:intron | 20.0% |
| !! | ATAAAAAATTACTCTCTTGA+GGG | - | chr4.4:17374348-17374367 | None:intergenic | 20.0% |
| !! | ATTCATTATTCCTAACATAT+AGG | - | chr4.4:17373253-17373272 | None:intergenic | 20.0% |
| !! | ATTTCAAAGTTAGATCATAT+AGG | - | chr4.4:17376417-17376436 | None:intergenic | 20.0% |
| !! | ATTTCAACTTATTCATTGTA+TGG | - | chr4.4:17373531-17373550 | None:intergenic | 20.0% |
| !! | CAATTACTAACATCAAAATT+TGG | + | chr4.4:17376013-17376032 | MS.gene050119:intron | 20.0% |
| !! | TAATTGAAGAAAATAAGCAA+TGG | + | chr4.4:17376377-17376396 | MS.gene050119:intron | 20.0% |
| !! | TATAAAAAATTACTCTCTTG+AGG | - | chr4.4:17374349-17374368 | None:intergenic | 20.0% |
| !! | TCATAATAATTTCAAAAGAG+CGG | - | chr4.4:17372975-17372994 | None:intergenic | 20.0% |
| !! | TTAAATTAAATCATCACTCA+AGG | + | chr4.4:17374524-17374543 | MS.gene050119:intron | 20.0% |
| !! | TTAATATTACTAATATGCCT+TGG | - | chr4.4:17375811-17375830 | None:intergenic | 20.0% |
| !! | TTATAAATATTATGGCAAGA+TGG | - | chr4.4:17375992-17376011 | None:intergenic | 20.0% |
| !! | TTTCAAAGTTAGATCATATA+GGG | - | chr4.4:17376416-17376435 | None:intergenic | 20.0% |
| !!! | AATGAATAAGTTGAAATATG+TGG | + | chr4.4:17373534-17373553 | MS.gene050119:intron | 20.0% |
| !!! | ATAATGAATCGTTTTGTAAA+TGG | + | chr4.4:17373264-17373283 | MS.gene050119:intron | 20.0% |
| !!! | ATGAATAAGTTGAAATATGT+GGG | + | chr4.4:17373535-17373554 | MS.gene050119:intron | 20.0% |
| !!! | CAGAACTAAATATTGTTTTA+TGG | - | chr4.4:17375226-17375245 | None:intergenic | 20.0% |
| !!! | CTAAATTTATGCTGATTTAT+TGG | + | chr4.4:17373492-17373511 | MS.gene050119:intron | 20.0% |
| !!! | GAAATTCAACCTTATTATTT+TGG | + | chr4.4:17374593-17374612 | MS.gene050119:intron | 20.0% |
| !!! | TATTGATTTTTTATCTTCCA+AGG | + | chr4.4:17375791-17375810 | MS.gene050119:intron | 20.0% |
| !!! | TTGGGTTGTTTTTTTTATTT+CGG | + | chr4.4:17372792-17372811 | MS.gene050119:intron | 20.0% |
| !!! | TTTCACTATATCATTTTTAC+AGG | - | chr4.4:17376332-17376351 | None:intergenic | 20.0% |
| ! | AAATGAGCTTATAAAAAGAG+AGG | - | chr4.4:17375620-17375639 | None:intergenic | 25.0% |
| ! | AATATAAGTTCGCAATTTGA+AGG | - | chr4.4:17373315-17373334 | None:intergenic | 25.0% |
| ! | AATCATGAAACTGAAATGAA+AGG | - | chr4.4:17372658-17372677 | None:intergenic | 25.0% |
| ! | AATGAGCTTATAAAAAGAGA+GGG | - | chr4.4:17375619-17375638 | None:intergenic | 25.0% |
| ! | AGAAAAAGATATAGTTTACC+TGG | - | chr4.4:17374320-17374339 | None:intergenic | 25.0% |
| ! | AGAAACATATAATCGGATTA+AGG | - | chr4.4:17374232-17374251 | None:intergenic | 25.0% |
| ! | AGATAAAAATATGTGTGTTC+TGG | - | chr4.4:17376533-17376552 | None:intergenic | 25.0% |
| ! | AGCTTATAAAAAGAGATAGA+GGG | - | chr4.4:17375658-17375677 | None:intergenic | 25.0% |
| ! | ATCATGAAACTGAAATGAAA+GGG | - | chr4.4:17372657-17372676 | None:intergenic | 25.0% |
| ! | ATCTGAGAAAGAAAAAAACA+TGG | - | chr4.4:17374401-17374420 | None:intergenic | 25.0% |
| ! | ATCTTATCATAATGATGATC+AGG | - | chr4.4:17374110-17374129 | None:intergenic | 25.0% |
| ! | CCATATACATATTAGGATTT+AGG | + | chr4.4:17376113-17376132 | MS.gene050119:intron | 25.0% |
| ! | CCTAAATCCTAATATGTATA+TGG | - | chr4.4:17376116-17376135 | None:intergenic | 25.0% |
| ! | GATCATCATTATGATAAGAT+AGG | + | chr4.4:17374110-17374129 | MS.gene050119:CDS | 25.0% |
| ! | GGAGTTATATTATAAATCTC+AGG | - | chr4.4:17376957-17376976 | None:intergenic | 25.0% |
| ! | TAAAAAATTACTCTCTTGAG+GGG | - | chr4.4:17374347-17374366 | None:intergenic | 25.0% |
| ! | TAAGAACCAAAAAGAATTTC+AGG | + | chr4.4:17376851-17376870 | MS.gene050119:CDS | 25.0% |
| ! | TGTATTATCATTGTAATCCT+TGG | - | chr4.4:17375145-17375164 | None:intergenic | 25.0% |
| ! | TTAACTTTATAGCTCATCAA+TGG | + | chr4.4:17372996-17373015 | MS.gene050119:intron | 25.0% |
| ! | TTATCATATTGCTGTAAAAG+TGG | + | chr4.4:17373342-17373361 | MS.gene050119:intron | 25.0% |
| ! | TTTGGTGAAAAATGCAATAA+GGG | - | chr4.4:17376901-17376920 | None:intergenic | 25.0% |
| !! | AAAGATACAATTTTCGGATT+AGG | - | chr4.4:17375465-17375484 | None:intergenic | 25.0% |
| !! | AATCTAGATTTCATGTTTTC+TGG | + | chr4.4:17376652-17376671 | MS.gene050119:intron | 25.0% |
| !! | ATTGCATTTTTCACCAAAAA+TGG | + | chr4.4:17376903-17376922 | MS.gene050119:CDS | 25.0% |
| !! | ATTTCAGTTTCATGATTTTC+TGG | + | chr4.4:17372661-17372680 | MS.gene050119:intron | 25.0% |
| !! | GTTTTGTGTGCATATAAATA+GGG | + | chr4.4:17375843-17375862 | MS.gene050119:intron | 25.0% |
| !! | TGTTTTGTGTGCATATAAAT+AGG | + | chr4.4:17375842-17375861 | MS.gene050119:intron | 25.0% |
| !! | TTTTGGTGAAAAATGCAATA+AGG | - | chr4.4:17376902-17376921 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTGTCCAGTTCTT+TGG | - | chr4.4:17374263-17374282 | None:intergenic | 25.0% |
| !!! | GAACACACATATTTTTATCT+AGG | + | chr4.4:17376533-17376552 | MS.gene050119:intron | 25.0% |
| !!! | GTTGTTTTACCTCTATAAAT+TGG | + | chr4.4:17375950-17375969 | MS.gene050119:intron | 25.0% |
| !!! | TTCATGATTTTCTGGTTTTA+TGG | + | chr4.4:17372669-17372688 | MS.gene050119:intron | 25.0% |
| !!! | TTTGTCTTTTTTGACGAATT+GGG | + | chr4.4:17372774-17372793 | MS.gene050119:intron | 25.0% |
| !!! | TTTTGTCTTTTTTGACGAAT+TGG | + | chr4.4:17372773-17372792 | MS.gene050119:intron | 25.0% |
| AAAAAATTACTCTCTTGAGG+GGG | - | chr4.4:17374346-17374365 | None:intergenic | 30.0% | |
| AAAATAAGCCTAAACCAAAC+AGG | + | chr4.4:17375562-17375581 | MS.gene050119:intron | 30.0% | |
| AAACACGCCATATACATATT+AGG | + | chr4.4:17376106-17376125 | MS.gene050119:intron | 30.0% | |
| AAGACACATCTTAAAACAAG+TGG | - | chr4.4:17374846-17374865 | None:intergenic | 30.0% | |
| ACAACAGAAAATGAGAAAAC+TGG | - | chr4.4:17375935-17375954 | None:intergenic | 30.0% | |
| ACGAACCCTAGTATTTAATT+TGG | - | chr4.4:17372947-17372966 | None:intergenic | 30.0% | |
| AGCAGCCAAATTAAATACTA+GGG | + | chr4.4:17372939-17372958 | MS.gene050119:intron | 30.0% | |
| ATAATAAGCCTAATCCAAAC+GGG | - | chr4.4:17375278-17375297 | None:intergenic | 30.0% | |
| ATTACGATTCCTGAATTTCA+TGG | + | chr4.4:17375884-17375903 | MS.gene050119:intron | 30.0% | |
| CATAATAAGCCTAATCCAAA+CGG | - | chr4.4:17375279-17375298 | None:intergenic | 30.0% | |
| CGCTGTAAGAAACATATAAT+CGG | - | chr4.4:17374239-17374258 | None:intergenic | 30.0% | |
| CTGCTCATCTATCATTATAA+TGG | - | chr4.4:17376069-17376088 | None:intergenic | 30.0% | |
| GAGCTTATAAAAAGAGATAG+AGG | - | chr4.4:17375659-17375678 | None:intergenic | 30.0% | |
| GGAACATTAATGATACATAC+CGG | - | chr4.4:17374825-17374844 | None:intergenic | 30.0% | |
| TATAACCCTAAAACGTGAAA+TGG | - | chr4.4:17372836-17372855 | None:intergenic | 30.0% | |
| TATCCAGGCTCATTAAAAAA+AGG | - | chr4.4:17375084-17375103 | None:intergenic | 30.0% | |
| TCAATGTCACTGAATTCAAT+TGG | + | chr4.4:17373759-17373778 | MS.gene050119:CDS | 30.0% | |
| TGACGACAATAGTAAAAGTT+TGG | - | chr4.4:17374564-17374583 | None:intergenic | 30.0% | |
| TGTAACTGCAAAATCCATTA+AGG | + | chr4.4:17376497-17376516 | MS.gene050119:intron | 30.0% | |
| TGTATACATCATTGTCTTCA+AGG | - | chr4.4:17375178-17375197 | None:intergenic | 30.0% | |
| TTAAGGTCATGTTAAGCATA+TGG | - | chr4.4:17373612-17373631 | None:intergenic | 30.0% | |
| TTATAATGATAGATGAGCAG+AGG | + | chr4.4:17376069-17376088 | MS.gene050119:intron | 30.0% | |
| TTATGTAAAACTTCTCCAAC+TGG | - | chr4.4:17376795-17376814 | None:intergenic | 30.0% | |
| TTTACCTCTATAAATTGGAC+TGG | + | chr4.4:17375955-17375974 | MS.gene050119:intron | 30.0% | |
| ! | TCCGTAAAAACATTTTCAAC+AGG | - | chr4.4:17373025-17373044 | None:intergenic | 30.0% |
| ! | TCTCACAAAGATTTTATCTG+TGG | - | chr4.4:17374682-17374701 | None:intergenic | 30.0% |
| !! | AGATGAATACTCATTTTTGC+AGG | + | chr4.4:17373893-17373912 | MS.gene050119:CDS | 30.0% |
| !! | ATGCTGATTTATTGGGAAAA+TGG | + | chr4.4:17373500-17373519 | MS.gene050119:intron | 30.0% |
| !! | ATTTGCCATTTCACGTTTTA+GGG | + | chr4.4:17372828-17372847 | MS.gene050119:intron | 30.0% |
| !! | ATTTTAGAGGAAAATTTGCC+AGG | + | chr4.4:17374299-17374318 | MS.gene050119:CDS | 30.0% |
| !! | CACACATATTTTTATCTAGG+AGG | + | chr4.4:17376536-17376555 | MS.gene050119:intron | 30.0% |
| !! | GCCTGTTGAAAATGTTTTTA+CGG | + | chr4.4:17373021-17373040 | MS.gene050119:intron | 30.0% |
| !! | TGCTGATTTATTGGGAAAAT+GGG | + | chr4.4:17373501-17373520 | MS.gene050119:intron | 30.0% |
| !! | TTAGTTTGCAACAGAATAGT+TGG | + | chr4.4:17372869-17372888 | MS.gene050119:intron | 30.0% |
| !!! | GTTAACATGATTTTTTGTGC+AGG | + | chr4.4:17373580-17373599 | MS.gene050119:intron | 30.0% |
| AAAAATTACTCTCTTGAGGG+GGG | - | chr4.4:17374345-17374364 | None:intergenic | 35.0% | |
| AAAGTATGCCTTAGTCTCTT+AGG | + | chr4.4:17374961-17374980 | MS.gene050119:CDS | 35.0% | |
| AACATCCCTGTATCTTGAAA+TGG | + | chr4.4:17376167-17376186 | MS.gene050119:intron | 35.0% | |
| AATTTCATGGTTAGGTTAGG+TGG | + | chr4.4:17375897-17375916 | MS.gene050119:intron | 35.0% | |
| ACATGACCTTAAGCTTTACA+AGG | + | chr4.4:17373620-17373639 | MS.gene050119:intron | 35.0% | |
| ACATTAATGATACATACCGG+TGG | - | chr4.4:17374822-17374841 | None:intergenic | 35.0% | |
| ACTAGCATTACGACTACTTT+GGG | - | chr4.4:17376823-17376842 | None:intergenic | 35.0% | |
| AGAACCAGTCCAATTTATAG+AGG | - | chr4.4:17375962-17375981 | None:intergenic | 35.0% | |
| AGGTAACCATTTCAAGATAC+AGG | - | chr4.4:17376176-17376195 | None:intergenic | 35.0% | |
| ATATGTGTGTTCTGGTACAA+AGG | - | chr4.4:17376525-17376544 | None:intergenic | 35.0% | |
| ATGCAGTCATGCAAAAGTTT+CGG | + | chr4.4:17374051-17374070 | MS.gene050119:CDS | 35.0% | |
| CAAAAAAAATCCAGGAGGAA+TGG | + | chr4.4:17374273-17374292 | MS.gene050119:CDS | 35.0% | |
| CAAAACCCTTGTAAAGCTTA+AGG | - | chr4.4:17373629-17373648 | None:intergenic | 35.0% | |
| CAGCAGCCAAATTAAATACT+AGG | + | chr4.4:17372938-17372957 | MS.gene050119:intron | 35.0% | |
| CATCTATACATAAAGGGCAA+TGG | - | chr4.4:17375764-17375783 | None:intergenic | 35.0% | |
| CATGACCTTAAGCTTTACAA+GGG | + | chr4.4:17373621-17373640 | MS.gene050119:intron | 35.0% | |
| CATGGAAATTCTATGAGTGT+CGG | + | chr4.4:17373696-17373715 | MS.gene050119:CDS | 35.0% | |
| CTAACCTAACCATGAAATTC+AGG | - | chr4.4:17375896-17375915 | None:intergenic | 35.0% | |
| CTGAATTTCATGGTTAGGTT+AGG | + | chr4.4:17375894-17375913 | MS.gene050119:intron | 35.0% | |
| GAAAAACCACTTGCGTTTAA+GGG | + | chr4.4:17376209-17376228 | MS.gene050119:intron | 35.0% | |
| GAACTGGACAAAAAAAATCC+AGG | + | chr4.4:17374265-17374284 | MS.gene050119:CDS | 35.0% | |
| GACATTCACTGATACATACA+CGG | + | chr4.4:17373084-17373103 | MS.gene050119:intron | 35.0% | |
| GATTCCTGAATTTCATGGTT+AGG | + | chr4.4:17375889-17375908 | MS.gene050119:intron | 35.0% | |
| GGTAACCATTTCAAGATACA+GGG | - | chr4.4:17376175-17376194 | None:intergenic | 35.0% | |
| TAGTAGCCACGTTTGAATTT+AGG | - | chr4.4:17373203-17373222 | None:intergenic | 35.0% | |
| TCATAGAATTTCCATGACCA+GGG | - | chr4.4:17373692-17373711 | None:intergenic | 35.0% | |
| TCCCTAAAAGTTAGCTATCA+GGG | - | chr4.4:17376286-17376305 | None:intergenic | 35.0% | |
| TGAAAAACCACTTGCGTTTA+AGG | + | chr4.4:17376208-17376227 | MS.gene050119:intron | 35.0% | |
| TGCATATAAATAGGGATGGA+GGG | + | chr4.4:17375851-17375870 | MS.gene050119:intron | 35.0% | |
| TGTGTGCATATAAATAGGGA+TGG | + | chr4.4:17375847-17375866 | MS.gene050119:intron | 35.0% | |
| TTCATTTCACAACGATGATG+AGG | + | chr4.4:17373797-17373816 | MS.gene050119:CDS | 35.0% | |
| TTCCCTAAAAGTTAGCTATC+AGG | - | chr4.4:17376287-17376306 | None:intergenic | 35.0% | |
| TTGTGAGAGTTTGTGAATCT+AGG | + | chr4.4:17374694-17374713 | MS.gene050119:CDS | 35.0% | |
| ! | AATCTAGGATGGAGCTTATT+AGG | + | chr4.4:17374709-17374728 | MS.gene050119:CDS | 35.0% |
| ! | ATCTAGGATGGAGCTTATTA+GGG | + | chr4.4:17374710-17374729 | MS.gene050119:CDS | 35.0% |
| ! | CTAAAATTTTCCATTCCTCC+TGG | - | chr4.4:17374286-17374305 | None:intergenic | 35.0% |
| ! | GCTGATTTATTGGGAAAATG+GGG | + | chr4.4:17373502-17373521 | MS.gene050119:intron | 35.0% |
| ! | GGAGGAATGGAAAATTTTAG+AGG | + | chr4.4:17374286-17374305 | MS.gene050119:CDS | 35.0% |
| ! | GTTTTTCACAAACACGTATG+AGG | - | chr4.4:17376196-17376215 | None:intergenic | 35.0% |
| ! | TCATTTTCAATCGTCTTTGC+TGG | + | chr4.4:17374626-17374645 | MS.gene050119:intron | 35.0% |
| ! | TGTAGCATGGTTGATTTATC+TGG | - | chr4.4:17375021-17375040 | None:intergenic | 35.0% |
| !! | CACTTTTTGTGCGTAAAAGA+AGG | - | chr4.4:17373456-17373475 | None:intergenic | 35.0% |
| !! | GATAGCTAACTTTTAGGGAA+GGG | + | chr4.4:17376287-17376306 | MS.gene050119:intron | 35.0% |
| !! | GATTTGCCATTTCACGTTTT+AGG | + | chr4.4:17372827-17372846 | MS.gene050119:intron | 35.0% |
| !! | TGATAGCTAACTTTTAGGGA+AGG | + | chr4.4:17376286-17376305 | MS.gene050119:intron | 35.0% |
| !!! | AAGCCTTTTTTTAATGAGCC+TGG | + | chr4.4:17375078-17375097 | MS.gene050119:CDS | 35.0% |
| AAGAAAAGACCGTCATGGTA+GGG | - | chr4.4:17374762-17374781 | None:intergenic | 40.0% | |
| AATTTCAGGCAGCTGTGAAT+AGG | + | chr4.4:17376865-17376884 | MS.gene050119:CDS | 40.0% | |
| AGAAACCAAGACTTGTAGCA+TGG | - | chr4.4:17375034-17375053 | None:intergenic | 40.0% | |
| AGAGAACAACAACATAACCC+AGG | + | chr4.4:17377013-17377032 | MS.gene050119:CDS | 40.0% | |
| AGCTTGTAGATCATATGCTG+AGG | + | chr4.4:17376764-17376783 | MS.gene050119:CDS | 40.0% | |
| ATATATCACCTGTGTCTCTG+CGG | - | chr4.4:17374144-17374163 | None:intergenic | 40.0% | |
| ATCAACCATGCTACAAGTCT+TGG | + | chr4.4:17375026-17375045 | MS.gene050119:CDS | 40.0% | |
| ATCTACTTCAGCTTTCGAAC+TGG | - | chr4.4:17374021-17374040 | None:intergenic | 40.0% | |
| ATGCAGCATGCCTATATGTT+AGG | + | chr4.4:17373240-17373259 | MS.gene050119:intron | 40.0% | |
| ATGGTAAGAACTGCGAAAAC+TGG | + | chr4.4:17374992-17375011 | MS.gene050119:CDS | 40.0% | |
| CAAAGAAGAAAAGACCGTCA+TGG | - | chr4.4:17374767-17374786 | None:intergenic | 40.0% | |
| CACTAGCATTACGACTACTT+TGG | - | chr4.4:17376824-17376843 | None:intergenic | 40.0% | |
| CCCTAAAAGTTAGCTATCAG+GGG | - | chr4.4:17376285-17376304 | None:intergenic | 40.0% | |
| CCTAAAAGTTAGCTATCAGG+GGG | - | chr4.4:17376284-17376303 | None:intergenic | 40.0% | |
| CGTCAAGAAACGAAAACAAG+AGG | + | chr4.4:17372613-17372632 | MS.gene050119:CDS | 40.0% | |
| CGTTTGAATTTAGGTGGCAA+TGG | - | chr4.4:17373194-17373213 | None:intergenic | 40.0% | |
| CTCATAGAATTTCCATGACC+AGG | - | chr4.4:17373693-17373712 | None:intergenic | 40.0% | |
| CTGGACAAAAAAAATCCAGG+AGG | + | chr4.4:17374268-17374287 | MS.gene050119:CDS | 40.0% | |
| CTTGTAGATCATATGCTGAG+GGG | + | chr4.4:17376766-17376785 | MS.gene050119:CDS | 40.0% | |
| GAGAGTTTGTGAATCTAGGA+TGG | + | chr4.4:17374698-17374717 | MS.gene050119:CDS | 40.0% | |
| GCAGGATCAATTTGACAATG+TGG | + | chr4.4:17373911-17373930 | MS.gene050119:CDS | 40.0% | |
| GCTTGTAGATCATATGCTGA+GGG | + | chr4.4:17376765-17376784 | MS.gene050119:CDS | 40.0% | |
| GTGCATATAAATAGGGATGG+AGG | + | chr4.4:17375850-17375869 | MS.gene050119:intron | 40.0% | |
| TAAACTCTCCCTAAGAGTTC+AGG | - | chr4.4:17373371-17373390 | None:intergenic | 40.0% | |
| TAATAGTTTAAGGGCCCGTT+TGG | + | chr4.4:17375261-17375280 | MS.gene050119:intron | 40.0% | |
| TAGCCACGTTTGAATTTAGG+TGG | - | chr4.4:17373200-17373219 | None:intergenic | 40.0% | |
| TTAAATACTAGGGTTCGTCG+TGG | + | chr4.4:17372949-17372968 | MS.gene050119:intron | 40.0% | |
| TTGCCACCTAAATTCAAACG+TGG | + | chr4.4:17373194-17373213 | MS.gene050119:intron | 40.0% | |
| TTGTAGATCATATGCTGAGG+GGG | + | chr4.4:17376767-17376786 | MS.gene050119:CDS | 40.0% | |
| TTTACAGGTACCCAAACATG+TGG | - | chr4.4:17376317-17376336 | None:intergenic | 40.0% | |
| TTTCGAACTGGACTCTGAAT+TGG | - | chr4.4:17374009-17374028 | None:intergenic | 40.0% | |
| ! | AAGTGGATTCCTGAACTCTT+AGG | + | chr4.4:17373359-17373378 | MS.gene050119:intron | 40.0% |
| ! | ACACCTTCAATCAGAAGTGT+CGG | + | chr4.4:17373145-17373164 | MS.gene050119:intron | 40.0% |
| ! | AGGGATGTTGACTGCATAAA+AGG | - | chr4.4:17376156-17376175 | None:intergenic | 40.0% |
| ! | AGTGGATTCCTGAACTCTTA+GGG | + | chr4.4:17373360-17373379 | MS.gene050119:intron | 40.0% |
| ! | CAGCTGCCTGAAATTCTTTT+TGG | - | chr4.4:17376860-17376879 | None:intergenic | 40.0% |
| ! | CCCCTGATAGCTAACTTTTA+GGG | + | chr4.4:17376282-17376301 | MS.gene050119:intron | 40.0% |
| ! | GGGATGTTGACTGCATAAAA+GGG | - | chr4.4:17376155-17376174 | None:intergenic | 40.0% |
| ! | TGTTTTATGGGACGAACCTT+AGG | - | chr4.4:17375213-17375232 | None:intergenic | 40.0% |
| !! | CATTGACTTGCGTTAGACAT+TGG | + | chr4.4:17373120-17373139 | MS.gene050119:intron | 40.0% |
| !! | CTGGTACAAAGGTACCTTAA+TGG | - | chr4.4:17376514-17376533 | None:intergenic | 40.0% |
| !! | TCTGTTTTTCTTCTGTTGCC+AGG | + | chr4.4:17373656-17373675 | MS.gene050119:intron | 40.0% |
| AAAGTTAGCTATCAGGGGGA+TGG | - | chr4.4:17376280-17376299 | None:intergenic | 45.0% | |
| AAGCATCCCTTAAACGCAAG+TGG | - | chr4.4:17376218-17376237 | None:intergenic | 45.0% | |
| AATGATACTGAGGGCCTGTT+TGG | - | chr4.4:17375579-17375598 | None:intergenic | 45.0% | |
| ACGAAAACAAGAGGAAGAGC+AGG | + | chr4.4:17372622-17372641 | MS.gene050119:CDS | 45.0% | |
| ACGCAAGTCAATGTTGTGAC+TGG | - | chr4.4:17373113-17373132 | None:intergenic | 45.0% | |
| ACTTGCGTTTAAGGGATGCT+TGG | + | chr4.4:17376217-17376236 | MS.gene050119:intron | 45.0% | |
| CAAGTTTACTACCACTCAGG+TGG | + | chr4.4:17374904-17374923 | MS.gene050119:CDS | 45.0% | |
| CAGCAAGTTTACTACCACTC+AGG | + | chr4.4:17374901-17374920 | MS.gene050119:intron | 45.0% | |
| CATTCGACATCCTTCAACCA+AGG | - | chr4.4:17373966-17373985 | None:intergenic | 45.0% | |
| CGATATGACTCAGCATATCC+AGG | - | chr4.4:17375099-17375118 | None:intergenic | 45.0% | |
| CTCTGACTATTACGACGATG+AGG | + | chr4.4:17373860-17373879 | MS.gene050119:CDS | 45.0% | |
| CTTATTAGGGCTGTCATCGT+TGG | + | chr4.4:17374723-17374742 | MS.gene050119:CDS | 45.0% | |
| GAAGAAAAGACCGTCATGGT+AGG | - | chr4.4:17374763-17374782 | None:intergenic | 45.0% | |
| GAAGGGTTCTCCACATGTTT+GGG | + | chr4.4:17376304-17376323 | MS.gene050119:intron | 45.0% | |
| GGAGAGTTTACTGCCCATTT+GGG | + | chr4.4:17373381-17373400 | MS.gene050119:intron | 45.0% | |
| TAATAGTCAGAGCCATCGTC+AGG | - | chr4.4:17373852-17373871 | None:intergenic | 45.0% | |
| TACACTGCGTAAACCACCTA+AGG | + | chr4.4:17375194-17375213 | MS.gene050119:CDS | 45.0% | |
| TCGAAATTCTTCGCAGTCTG+TGG | - | chr4.4:17376931-17376950 | None:intergenic | 45.0% | |
| TCTTACAGCGACCAAAGAAC+TGG | + | chr4.4:17374249-17374268 | MS.gene050119:intron | 45.0% | |
| TGACAATGTGGATTTGCCTC+CGG | + | chr4.4:17373923-17373942 | MS.gene050119:CDS | 45.0% | |
| TGTAGATCATATGCTGAGGG+GGG | + | chr4.4:17376768-17376787 | MS.gene050119:CDS | 45.0% | |
| TTTAAGGGCCCGTTTGGATT+AGG | + | chr4.4:17375267-17375286 | MS.gene050119:intron | 45.0% | |
| TTTATGGGACGAACCTTAGG+TGG | - | chr4.4:17375210-17375229 | None:intergenic | 45.0% | |
| ! | AGTCATATCGTGCTGATGAG+GGG | + | chr4.4:17375109-17375128 | MS.gene050119:CDS | 45.0% |
| ! | CCCCCTGATAGCTAACTTTT+AGG | + | chr4.4:17376281-17376300 | MS.gene050119:intron | 45.0% |
| ! | CTTTTGCATGACTGCATCTG+TGG | - | chr4.4:17374048-17374067 | None:intergenic | 45.0% |
| ! | GAGTCATATCGTGCTGATGA+GGG | + | chr4.4:17375108-17375127 | MS.gene050119:CDS | 45.0% |
| ! | TGAGTCATATCGTGCTGATG+AGG | + | chr4.4:17375107-17375126 | MS.gene050119:CDS | 45.0% |
| ! | TTAGTCTTTGCACTTGCGTG+TGG | + | chr4.4:17373424-17373443 | MS.gene050119:intron | 45.0% |
| ! | TTTTACGGACGACGCATACA+CGG | + | chr4.4:17373036-17373055 | MS.gene050119:intron | 45.0% |
| !! | ACCTTCAATCAGAAGTGTCG+GGG | + | chr4.4:17373147-17373166 | MS.gene050119:intron | 45.0% |
| !! | ATGAGTGTCGGAGAATCATC+TGG | + | chr4.4:17373708-17373727 | MS.gene050119:CDS | 45.0% |
| !! | CACCTTCAATCAGAAGTGTC+GGG | + | chr4.4:17373146-17373165 | MS.gene050119:intron | 45.0% |
| !! | CCTTTTGAGGACTTTGTTGC+GGG | + | chr4.4:17376708-17376727 | MS.gene050119:CDS | 45.0% |
| !! | GAGTGGTAGTAAACTTGCTG+CGG | - | chr4.4:17374901-17374920 | None:intergenic | 45.0% |
| !! | GCCTTTTGAGGACTTTGTTG+CGG | + | chr4.4:17376707-17376726 | MS.gene050119:intron | 45.0% |
| !! | CTAAAAAAAATAAAAATAAA+AGG | - | chr4.4:17374451-17374470 | None:intergenic | 5.0% |
| AAGTTAGCAGTAGCAGCAGC+AGG | - | chr4.4:17376978-17376997 | None:intergenic | 50.0% | |
| ACAATGTGGATTTGCCTCCG+GGG | + | chr4.4:17373925-17373944 | MS.gene050119:CDS | 50.0% | |
| ACCCCGACACTTCTGATTGA+AGG | - | chr4.4:17373151-17373170 | None:intergenic | 50.0% | |
| AGCATCAGTGCCTTGGTTGA+AGG | + | chr4.4:17373953-17373972 | MS.gene050119:CDS | 50.0% | |
| AGTCTCTTAGGTACGTGGCA+TGG | + | chr4.4:17374973-17374992 | MS.gene050119:CDS | 50.0% | |
| ATACATACCGGTGGAACTGC+AGG | - | chr4.4:17374813-17374832 | None:intergenic | 50.0% | |
| CAAAGTCCTCAAAAGGCTGC+AGG | - | chr4.4:17376704-17376723 | None:intergenic | 50.0% | |
| CAACATGTCAGTCTCGTGAC+TGG | - | chr4.4:17373065-17373084 | None:intergenic | 50.0% | |
| CCCGCAACAAAGTCCTCAAA+AGG | - | chr4.4:17376711-17376730 | None:intergenic | 50.0% | |
| CTTCTGTTGCCAGGATGCTT+TGG | + | chr4.4:17373665-17373684 | MS.gene050119:intron | 50.0% | |
| GAAGGATGTCGAATGCAAGC+CGG | + | chr4.4:17373971-17373990 | MS.gene050119:CDS | 50.0% | |
| GAATTGGCATGAGAACCAGC+CGG | - | chr4.4:17373993-17374012 | None:intergenic | 50.0% | |
| GACAATGTGGATTTGCCTCC+GGG | + | chr4.4:17373924-17373943 | MS.gene050119:CDS | 50.0% | |
| GCACTTGAAGATCCTGACGA+TGG | + | chr4.4:17373837-17373856 | MS.gene050119:CDS | 50.0% | |
| GCCACGTACCTAAGAGACTA+AGG | - | chr4.4:17374972-17374991 | None:intergenic | 50.0% | |
| GCCTTAGTCTCTTAGGTACG+TGG | + | chr4.4:17374968-17374987 | MS.gene050119:CDS | 50.0% | |
| GGAAGGGTTCTCCACATGTT+TGG | + | chr4.4:17376303-17376322 | MS.gene050119:intron | 50.0% | |
| GGGAGAGTTTACTGCCCATT+TGG | + | chr4.4:17373380-17373399 | MS.gene050119:intron | 50.0% | |
| GTCGGAGAATCATCTGGTAG+TGG | + | chr4.4:17373714-17373733 | MS.gene050119:CDS | 50.0% | |
| GTTTAAGGGATGCTTGGAGG+TGG | + | chr4.4:17376223-17376242 | MS.gene050119:intron | 50.0% | |
| TACATACCGGTGGAACTGCA+GGG | - | chr4.4:17374812-17374831 | None:intergenic | 50.0% | |
| TCAGTATGTTCCTCGCCCTT+AGG | - | chr4.4:17376743-17376762 | None:intergenic | 50.0% | |
| TGCGTTTAAGGGATGCTTGG+AGG | + | chr4.4:17376220-17376239 | MS.gene050119:intron | 50.0% | |
| TGCTGCTGCTACTGCTAACT+TGG | + | chr4.4:17376977-17376996 | MS.gene050119:CDS | 50.0% | |
| TGGTTAGGTTAGGTGGCTGA+TGG | + | chr4.4:17375904-17375923 | MS.gene050119:intron | 50.0% | |
| TTGACGACGACGCCAGAATT+GGG | - | chr4.4:17372599-17372618 | None:intergenic | 50.0% | |
| ! | AAAGTACCCTGCAGTTCCAC+CGG | + | chr4.4:17374803-17374822 | MS.gene050119:CDS | 50.0% |
| ! | ACTGAGGGCCTGTTTGGTTT+AGG | - | chr4.4:17375573-17375592 | None:intergenic | 50.0% |
| !! | GCAGTCTGTGGAGCCATTTT+TGG | - | chr4.4:17376919-17376938 | None:intergenic | 50.0% |
| ACTAATCCCCTCGAGCCTTG+TGG | - | chr4.4:17373409-17373428 | None:intergenic | 55.0% | |
| ACTACCACTCAGGTGGCTTG+AGG | + | chr4.4:17374911-17374930 | MS.gene050119:CDS | 55.0% | |
| CAATGTGGATTTGCCTCCGG+GGG | + | chr4.4:17373926-17373945 | MS.gene050119:CDS | 55.0% | |
| CCTCAAAAGGCTGCAGGTGA+AGG | - | chr4.4:17376698-17376717 | None:intergenic | 55.0% | |
| CTAGGCACTCCCTACCATGA+CGG | + | chr4.4:17374750-17374769 | MS.gene050119:CDS | 55.0% | |
| CTTGACGACGACGCCAGAAT+TGG | - | chr4.4:17372600-17372619 | None:intergenic | 55.0% | |
| GACGCCAGAATTGGGGGAAT+CGG | - | chr4.4:17372591-17372610 | None:intergenic | 55.0% | |
| GATGCTTTGGTCCCTGGTCA+TGG | + | chr4.4:17373678-17373697 | MS.gene050119:CDS | 55.0% | |
| GCTGTCATCGTTGGACCTCT+AGG | + | chr4.4:17374732-17374751 | MS.gene050119:CDS | 55.0% | |
| GTATGTTCCTCGCCCTTAGG+CGG | - | chr4.4:17376740-17376759 | None:intergenic | 55.0% | |
| GTCTTTGCACTTGCGTGTGG+AGG | + | chr4.4:17373427-17373446 | MS.gene050119:intron | 55.0% | |
| TGACGACGACGCCAGAATTG+GGG | - | chr4.4:17372598-17372617 | None:intergenic | 55.0% | |
| TGAGGGGCAAAGGAGATCCA+AGG | + | chr4.4:17375125-17375144 | MS.gene050119:CDS | 55.0% | |
| TTAGCCTCAAGCCACCTGAG+TGG | - | chr4.4:17374918-17374937 | None:intergenic | 55.0% | |
| ! | ATCGTGCTGATGAGGGGCAA+AGG | + | chr4.4:17375115-17375134 | MS.gene050119:CDS | 55.0% |
| ! | CCTTCACCTGCAGCCTTTTG+AGG | + | chr4.4:17376695-17376714 | MS.gene050119:intron | 55.0% |
| ! | CTAATCCCCTCGAGCCTTGT+GGG | - | chr4.4:17373408-17373427 | None:intergenic | 55.0% |
| ! | GAGCCTTGTGGGACCCAAAT+GGG | - | chr4.4:17373397-17373416 | None:intergenic | 55.0% |
| ! | GGAACTGCAGGGTACTTTGC+AGG | - | chr4.4:17374801-17374820 | None:intergenic | 55.0% |
| !! | CATGCCGATTCCCCCAATTC+TGG | + | chr4.4:17372584-17372603 | MS.gene050119:CDS | 55.0% |
| !! | GGGTAGAAGCATCAGTGCCT+TGG | + | chr4.4:17373946-17373965 | MS.gene050119:CDS | 55.0% |
| !! | TCATGGTAGGGAGTGCCTAG+AGG | - | chr4.4:17374750-17374769 | None:intergenic | 55.0% |
| ACTGATGCTTCTACCCCCGG+AGG | - | chr4.4:17373942-17373961 | None:intergenic | 60.0% | |
| CTGCCCATTTGGGTCCCACA+AGG | + | chr4.4:17373391-17373410 | MS.gene050119:intron | 60.0% | |
| GACGACGACGCCAGAATTGG+GGG | - | chr4.4:17372597-17372616 | None:intergenic | 60.0% | |
| GATGTCGAATGCAAGCCGGC+TGG | + | chr4.4:17373975-17373994 | MS.gene050119:CDS | 60.0% | |
| TATGCTGAGGGGGGACCAGT+TGG | + | chr4.4:17376777-17376796 | MS.gene050119:CDS | 60.0% | |
| TGCCAGGATGCTTTGGTCCC+TGG | + | chr4.4:17373672-17373691 | MS.gene050119:intron | 60.0% | |
| TGCGGGACACTTCCGCCTAA+GGG | + | chr4.4:17376725-17376744 | MS.gene050119:CDS | 60.0% | |
| TGCTTCAGCCGCAGAGACAC+AGG | + | chr4.4:17374133-17374152 | MS.gene050119:CDS | 60.0% | |
| TTGCGGGACACTTCCGCCTA+AGG | + | chr4.4:17376724-17376743 | MS.gene050119:CDS | 60.0% | |
| TTGGGTCCCACAAGGCTCGA+GGG | + | chr4.4:17373399-17373418 | MS.gene050119:intron | 60.0% | |
| TTTGGGTCCCACAAGGCTCG+AGG | + | chr4.4:17373398-17373417 | MS.gene050119:intron | 60.0% | |
| ! | CGAGCCTTGTGGGACCCAAA+TGG | - | chr4.4:17373398-17373417 | None:intergenic | 60.0% |
| ! | GACCAGGGACCAAAGCATCC+TGG | - | chr4.4:17373677-17373696 | None:intergenic | 60.0% |
| !! | GGCACTGATGCTTCTACCCC+CGG | - | chr4.4:17373945-17373964 | None:intergenic | 60.0% |
| GACACTTCCGCCTAAGGGCG+AGG | + | chr4.4:17376730-17376749 | MS.gene050119:CDS | 65.0% | |
| TGGGTCCCACAAGGCTCGAG+GGG | + | chr4.4:17373400-17373419 | MS.gene050119:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 17372569 | 17377040 | 17372569 | ID=MS.gene050119 |
| chr4.4 | mRNA | 17372569 | 17377040 | 17372569 | ID=MS.gene050119.t1;Parent=MS.gene050119 |
| chr4.4 | exon | 17372569 | 17372643 | 17372569 | ID=MS.gene050119.t1.exon1;Parent=MS.gene050119.t1 |
| chr4.4 | CDS | 17372569 | 17372643 | 17372569 | ID=cds.MS.gene050119.t1;Parent=MS.gene050119.t1 |
| chr4.4 | exon | 17373678 | 17374154 | 17373678 | ID=MS.gene050119.t1.exon2;Parent=MS.gene050119.t1 |
| chr4.4 | CDS | 17373678 | 17374154 | 17373678 | ID=cds.MS.gene050119.t1;Parent=MS.gene050119.t1 |
| chr4.4 | exon | 17374257 | 17374320 | 17374257 | ID=MS.gene050119.t1.exon3;Parent=MS.gene050119.t1 |
| chr4.4 | CDS | 17374257 | 17374320 | 17374257 | ID=cds.MS.gene050119.t1;Parent=MS.gene050119.t1 |
| chr4.4 | exon | 17374685 | 17374824 | 17374685 | ID=MS.gene050119.t1.exon4;Parent=MS.gene050119.t1 |
| chr4.4 | CDS | 17374685 | 17374824 | 17374685 | ID=cds.MS.gene050119.t1;Parent=MS.gene050119.t1 |
| chr4.4 | exon | 17374904 | 17375215 | 17374904 | ID=MS.gene050119.t1.exon5;Parent=MS.gene050119.t1 |
| chr4.4 | CDS | 17374904 | 17375215 | 17374904 | ID=cds.MS.gene050119.t1;Parent=MS.gene050119.t1 |
| chr4.4 | exon | 17376708 | 17377040 | 17376708 | ID=MS.gene050119.t1.exon6;Parent=MS.gene050119.t1 |
| chr4.4 | CDS | 17376708 | 17377040 | 17376708 | ID=cds.MS.gene050119.t1;Parent=MS.gene050119.t1 |
| Gene Sequence |
| Protein sequence |
