Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26430.t1 | XP_024638208.1 | 98.1 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 1.90E-114 | 421.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26430.t1 | Q9LM93 | 85.2 | 209 | 31 | 0 | 3 | 211 | 6 | 214 | 1.3e-103 | 377.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26430.t1 | A0A396IBZ2 | 98.1 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 1.4e-114 | 421.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051832 | MS.gene26430 | 0.840827 | 6.88E-58 | -1.69E-46 |
| MS.gene051975 | MS.gene26430 | 0.813829 | 2.10E-51 | -1.69E-46 |
| MS.gene054576 | MS.gene26430 | 0.80122 | 9.98E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene26430 | 0.805034 | 1.62E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene26430 | 0.815839 | 7.53E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene26430 | -0.822715 | 2.04E-53 | -1.69E-46 |
| MS.gene060365 | MS.gene26430 | 0.838785 | 2.34E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26430.t1 | MTR_4g087885 | 98.565 | 209 | 3 | 0 | 1 | 209 | 1 | 209 | 2.66e-154 | 429 |
| MS.gene26430.t1 | MTR_2g097220 | 96.000 | 175 | 7 | 0 | 37 | 211 | 31 | 205 | 3.36e-125 | 353 |
| MS.gene26430.t1 | MTR_7g026260 | 26.389 | 216 | 130 | 7 | 10 | 197 | 61 | 275 | 1.54e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26430.t1 | AT1G20575 | 85.167 | 209 | 31 | 0 | 3 | 211 | 6 | 214 | 1.69e-138 | 387 |
| MS.gene26430.t1 | AT2G39630 | 25.114 | 219 | 135 | 3 | 13 | 202 | 69 | 287 | 4.18e-12 | 64.7 |
| MS.gene26430.t1 | AT2G39630 | 37.755 | 98 | 54 | 1 | 13 | 103 | 69 | 166 | 1.70e-11 | 62.0 |
| MS.gene26430.t1 | AT2G39630 | 37.755 | 98 | 54 | 1 | 13 | 103 | 69 | 166 | 1.74e-11 | 62.0 |
Find 48 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATTTGACAGGGTCTTTC+AGG | 0.128725 | 4.4:-24894502 | MS.gene26430:intron |
| TTGTTATTTGTAGACTTTAT+AGG | 0.210565 | 4.4:-24894392 | MS.gene26430:intron |
| AGGAAGCCTGGCAAATATTT+TGG | 0.222110 | 4.4:+24894749 | None:intergenic |
| ACTGAAGGTGCTTGAATATA+AGG | 0.251080 | 4.4:+24895679 | None:intergenic |
| AAACAACTGCAACAGGTTTA+TGG | 0.254808 | 4.4:-24895298 | MS.gene26430:CDS |
| ACCGGGACTCGTTATGTTAA+AGG | 0.314815 | 4.4:-24894614 | MS.gene26430:CDS |
| GCAGGAACGGCTTATATTCA+TGG | 0.336863 | 4.4:-24894946 | MS.gene26430:intron |
| TTCAGAAAACAGTTGGAAAC+TGG | 0.361295 | 4.4:-24894650 | MS.gene26430:intron |
| TATTAGTTGCTGTGTTAGTA+AGG | 0.383935 | 4.4:-24894349 | MS.gene26430:CDS |
| GCAACTGCACCTCTTCAATA+TGG | 0.398792 | 4.4:+24894277 | None:intergenic |
| AGACCTAGGAAGATGGGTTT+AGG | 0.409396 | 4.4:-24895114 | MS.gene26430:intron |
| TGTTGTAAAACAACTGCAAC+AGG | 0.416602 | 4.4:-24895305 | MS.gene26430:CDS |
| ACTGGTGCTGATATAGTTAC+CGG | 0.430856 | 4.4:-24894632 | MS.gene26430:CDS |
| AATATTTGCCAGGCTTCCTT+AGG | 0.431974 | 4.4:-24894745 | MS.gene26430:intron |
| CATGGCATGAAGCATGCATC+TGG | 0.445124 | 4.4:-24894928 | MS.gene26430:CDS |
| TAAGGGATATGTCTTTCAAA+TGG | 0.448303 | 4.4:-24894331 | MS.gene26430:CDS |
| CTGCAGCCAAAATATTTGCC+AGG | 0.455165 | 4.4:-24894755 | MS.gene26430:intron |
| CCTGGTGTCTCAGATTTGAC+AGG | 0.470074 | 4.4:-24894512 | MS.gene26430:CDS |
| ATACCTAAACCCATCTTCCT+AGG | 0.477853 | 4.4:+24895111 | None:intergenic |
| AAGGTGGTGGTGTGCATGGA+TGG | 0.480388 | 4.4:-24894595 | MS.gene26430:CDS |
| ATAGTTCGAGCATCCAGAAA+AGG | 0.481126 | 4.4:-24894303 | MS.gene26430:CDS |
| ACAACATCCTGGGTACCATC+AGG | 0.496739 | 4.4:+24895322 | None:intergenic |
| TTTACTTACCTAAGGAAGCC+TGG | 0.511532 | 4.4:+24894737 | None:intergenic |
| GTTAAAGGTGGTGGTGTGCA+TGG | 0.512654 | 4.4:-24894599 | MS.gene26430:CDS |
| ATTAGTTGCTGTGTTAGTAA+GGG | 0.512925 | 4.4:-24894348 | MS.gene26430:CDS |
| AAGAGCGAGACCTAGGAAGA+TGG | 0.517078 | 4.4:-24895121 | MS.gene26430:CDS |
| ACTCGTTATGTTAAAGGTGG+TGG | 0.518521 | 4.4:-24894608 | MS.gene26430:CDS |
| AAGTTATTGTTGTGGACGAT+GGG | 0.536570 | 4.4:-24895348 | MS.gene26430:CDS |
| ACCTTTAACATAACGAGTCC+CGG | 0.539507 | 4.4:+24894613 | None:intergenic |
| TAGTTCGAGCATCCAGAAAA+GGG | 0.542215 | 4.4:-24894302 | MS.gene26430:CDS |
| TTGAGTCGCTCGTTATATGT+AGG | 0.542448 | 4.4:+24895720 | None:intergenic |
| TTATGCGCAAACTAACAAGC+AGG | 0.553714 | 4.4:-24894568 | MS.gene26430:CDS |
| TGAATATAAGGTAAAGAATG+AGG | 0.557227 | 4.4:+24895691 | None:intergenic |
| CATTTCTATAATCCACCAGC+AGG | 0.559642 | 4.4:+24894006 | None:intergenic |
| AGAGCGAGACCTAGGAAGAT+GGG | 0.559994 | 4.4:-24895120 | MS.gene26430:CDS |
| TACACTTTACAGATGCCTGC+TGG | 0.566448 | 4.4:-24894021 | MS.gene26430:intron |
| CTGGTGTCTCAGATTTGACA+GGG | 0.567238 | 4.4:-24894511 | MS.gene26430:CDS |
| GAAGTTATTGTTGTGGACGA+TGG | 0.573289 | 4.4:-24895349 | MS.gene26430:CDS |
| CTGGTGCTGATATAGTTACC+GGG | 0.595385 | 4.4:-24894631 | MS.gene26430:CDS |
| ACTTTACAGATGCCTGCTGG+TGG | 0.610786 | 4.4:-24894018 | MS.gene26430:intron |
| AGCTGTTAAGAGCGAGACCT+AGG | 0.614252 | 4.4:-24895128 | MS.gene26430:CDS |
| TATGCGCAAACTAACAAGCA+GGG | 0.621645 | 4.4:-24894567 | MS.gene26430:CDS |
| CCTGTCAAATCTGAGACACC+AGG | 0.627249 | 4.4:+24894512 | None:intergenic |
| TGGGAGTCCTGATGGTACCC+AGG | 0.629966 | 4.4:-24895329 | MS.gene26430:CDS |
| GTGGACGATGGGAGTCCTGA+TGG | 0.630791 | 4.4:-24895337 | MS.gene26430:CDS |
| ATGCGCAAACTAACAAGCAG+GGG | 0.658767 | 4.4:-24894566 | MS.gene26430:CDS |
| AAAAGGGTACCATATTGAAG+AGG | 0.662883 | 4.4:-24894286 | MS.gene26430:intron |
| GGGACTCGTTATGTTAAAGG+TGG | 0.685030 | 4.4:-24894611 | MS.gene26430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTTCAATATTAATTATA+AGG | - | chr4.4:24894163-24894182 | MS.gene26430:intron | 10.0% |
| !! | ATATATCAAGATGTTATAAA+TGG | + | chr4.4:24895631-24895650 | None:intergenic | 15.0% |
| !!! | ATATGTAATTTTACATTTTG+GGG | - | chr4.4:24894188-24894207 | MS.gene26430:intron | 15.0% |
| !!! | GATATGTAATTTTACATTTT+GGG | - | chr4.4:24894187-24894206 | MS.gene26430:intron | 15.0% |
| !!! | TGATATGTAATTTTACATTT+TGG | - | chr4.4:24894186-24894205 | MS.gene26430:intron | 15.0% |
| !! | TAAATCCTATGTCAATAAAA+AGG | + | chr4.4:24895730-24895749 | None:intergenic | 20.0% |
| !!! | AATGCCTTTTAGAATTTATA+GGG | - | chr4.4:24894335-24894354 | MS.gene26430:CDS | 20.0% |
| !!! | TCACAAGTTTTATGAATAAA+AGG | + | chr4.4:24895690-24895709 | None:intergenic | 20.0% |
| !!! | TTGTTATTTGTAGACTTTAT+AGG | - | chr4.4:24895387-24895406 | MS.gene26430:intron | 20.0% |
| ! | AAAAGGAAGCTAAATACTTA+AGG | + | chr4.4:24894275-24894294 | None:intergenic | 25.0% |
| ! | ACTCTAAATGATATGATGAA+GGG | + | chr4.4:24894607-24894626 | None:intergenic | 25.0% |
| ! | ATAGCCCTATAAATTCTAAA+AGG | + | chr4.4:24894342-24894361 | None:intergenic | 25.0% |
| ! | ATGTTCTTATGAATCATATG+TGG | - | chr4.4:24894219-24894238 | MS.gene26430:intron | 25.0% |
| ! | TACTCTAAATGATATGATGA+AGG | + | chr4.4:24894608-24894627 | None:intergenic | 25.0% |
| ! | TATAAATGACTAGTGATTTG+TGG | - | chr4.4:24894551-24894570 | MS.gene26430:CDS | 25.0% |
| ! | TATGAATCATATGTGGATAA+TGG | - | chr4.4:24894226-24894245 | MS.gene26430:intron | 25.0% |
| ! | TCTGATGTGATAAAACATTA+TGG | - | chr4.4:24894731-24894750 | MS.gene26430:intron | 25.0% |
| ! | TGAATATAAGGTAAAGAATG+AGG | + | chr4.4:24894091-24894110 | None:intergenic | 25.0% |
| ! | TTAAAAGCTTTACTTACCTA+AGG | + | chr4.4:24895053-24895072 | None:intergenic | 25.0% |
| !! | ATAATGTTTTATCACATCAG+AGG | + | chr4.4:24894732-24894751 | None:intergenic | 25.0% |
| !! | CTTTTTGCTTCTCAATTTTA+GGG | - | chr4.4:24894396-24894415 | MS.gene26430:intron | 25.0% |
| !! | TCTTTTTGCTTCTCAATTTT+AGG | - | chr4.4:24894395-24894414 | MS.gene26430:intron | 25.0% |
| !!! | ACTGTTTTCTGAAAAACAAA+AGG | + | chr4.4:24895122-24895141 | None:intergenic | 25.0% |
| !!! | CTGTTTTCTGAAAAACAAAA+GGG | + | chr4.4:24895121-24895140 | None:intergenic | 25.0% |
| !!! | GAATGCCTTTTAGAATTTAT+AGG | - | chr4.4:24894334-24894353 | MS.gene26430:CDS | 25.0% |
| !!! | TGATTTTGAAGTTATTGTTG+TGG | - | chr4.4:24894423-24894442 | MS.gene26430:intron | 25.0% |
| !!! | TGGAAATTTTGTTGTCATTA+TGG | - | chr4.4:24894871-24894890 | MS.gene26430:intron | 25.0% |
| !!! | TGTGGTCTATTCTATTTTTT+GGG | - | chr4.4:24894569-24894588 | MS.gene26430:CDS | 25.0% |
| !!! | TTGTGGTCTATTCTATTTTT+TGG | - | chr4.4:24894568-24894587 | MS.gene26430:CDS | 25.0% |
| !!! | TTTGTTTTTCAGAAAACAGT+TGG | - | chr4.4:24895122-24895141 | MS.gene26430:CDS | 25.0% |
| AAAACACTCACTAAACTTTG+AGG | + | chr4.4:24895324-24895343 | None:intergenic | 30.0% | |
| AAAACTTGTGAACTGAATGA+TGG | - | chr4.4:24895699-24895718 | MS.gene26430:CDS | 30.0% | |
| AGAGATAGAGAAATTACTGA+AGG | + | chr4.4:24894118-24894137 | None:intergenic | 30.0% | |
| ATTAGTTGCTGTGTTAGTAA+GGG | - | chr4.4:24895431-24895450 | MS.gene26430:intron | 30.0% | |
| TAAGGGATATGTCTTTCAAA+TGG | - | chr4.4:24895448-24895467 | MS.gene26430:intron | 30.0% | |
| TATTAGTTGCTGTGTTAGTA+AGG | - | chr4.4:24895430-24895449 | MS.gene26430:intron | 30.0% | |
| TCAGGTAAAGAGATTGATAA+TGG | - | chr4.4:24895295-24895314 | MS.gene26430:CDS | 30.0% | |
| TTCTATTCGTTACATTAACC+TGG | - | chr4.4:24895536-24895555 | MS.gene26430:intron | 30.0% | |
| ! | ATTTCCATCTCTTCCAATTT+TGG | + | chr4.4:24894302-24894321 | None:intergenic | 30.0% |
| ! | CACATCCTTTTTATTGACAT+AGG | - | chr4.4:24895722-24895741 | MS.gene26430:CDS | 30.0% |
| ! | TTCTTGCACAAACACTTTTA+TGG | - | chr4.4:24895244-24895263 | MS.gene26430:intron | 30.0% |
| ! | TTTCCATCTCTTCCAATTTT+GGG | + | chr4.4:24894301-24894320 | None:intergenic | 30.0% |
| !! | ATGTGATTAATTTGCAGGAA+CGG | - | chr4.4:24894820-24894839 | MS.gene26430:intron | 30.0% |
| !! | TTTTCTGAAAAACAAAAGGG+AGG | + | chr4.4:24895118-24895137 | None:intergenic | 30.0% |
| AAACAACTGCAACAGGTTTA+TGG | - | chr4.4:24894481-24894500 | MS.gene26430:intron | 35.0% | |
| AAACCAATCAAGTGATCAAC+AGG | + | chr4.4:24895352-24895371 | None:intergenic | 35.0% | |
| AACCAATCAAGTGATCAACA+GGG | + | chr4.4:24895351-24895370 | None:intergenic | 35.0% | |
| AAGTTATTGTTGTGGACGAT+GGG | - | chr4.4:24894431-24894450 | MS.gene26430:intron | 35.0% | |
| ATGAAGTTGACATAACAACC+AGG | + | chr4.4:24895557-24895576 | None:intergenic | 35.0% | |
| CTGCAAATTAATCACATCAG+AGG | + | chr4.4:24894817-24894836 | None:intergenic | 35.0% | |
| TGTTGTAAAACAACTGCAAC+AGG | - | chr4.4:24894474-24894493 | MS.gene26430:intron | 35.0% | |
| TTCAGAAAACAGTTGGAAAC+TGG | - | chr4.4:24895129-24895148 | MS.gene26430:CDS | 35.0% | |
| ! | CTTCCTTTTCAACCCAAAAT+TGG | - | chr4.4:24894286-24894305 | MS.gene26430:intron | 35.0% |
| ! | TTCAATATGGTACCCTTTTC+TGG | + | chr4.4:24895492-24895511 | None:intergenic | 35.0% |
| !! | AAAAGGGTACCATATTGAAG+AGG | - | chr4.4:24895493-24895512 | MS.gene26430:intron | 35.0% |
| !! | ACTGAAGGTGCTTGAATATA+AGG | + | chr4.4:24894103-24894122 | None:intergenic | 35.0% |
| !! | CAGTTGTTTTACAACATCCT+GGG | + | chr4.4:24894470-24894489 | None:intergenic | 35.0% |
| !! | CTCTGATGTGATTAATTTGC+AGG | - | chr4.4:24894815-24894834 | MS.gene26430:intron | 35.0% |
| !!! | CTTCCAATTTTGGGTTGAAA+AGG | + | chr4.4:24894292-24894311 | None:intergenic | 35.0% |
| AATATTTGCCAGGCTTCCTT+AGG | - | chr4.4:24895034-24895053 | MS.gene26430:intron | 40.0% | |
| ACCTTTAACATAACGAGTCC+CGG | + | chr4.4:24895169-24895188 | None:intergenic | 40.0% | |
| ACTCGTTATGTTAAAGGTGG+TGG | - | chr4.4:24895171-24895190 | MS.gene26430:intron | 40.0% | |
| ACTGAACAGAGCAACTTACA+TGG | + | chr4.4:24894913-24894932 | None:intergenic | 40.0% | |
| AGTAACCGTGTATATTCCTG+TGG | - | chr4.4:24894624-24894643 | MS.gene26430:CDS | 40.0% | |
| ATACCTAAACCCATCTTCCT+AGG | + | chr4.4:24894671-24894690 | None:intergenic | 40.0% | |
| ATAGTTCGAGCATCCAGAAA+AGG | - | chr4.4:24895476-24895495 | MS.gene26430:intron | 40.0% | |
| CAACCCAAAATTGGAAGAGA+TGG | - | chr4.4:24894295-24894314 | MS.gene26430:CDS | 40.0% | |
| GAAGTTATTGTTGTGGACGA+TGG | - | chr4.4:24894430-24894449 | MS.gene26430:intron | 40.0% | |
| TAGTTCGAGCATCCAGAAAA+GGG | - | chr4.4:24895477-24895496 | MS.gene26430:intron | 40.0% | |
| TATGCGCAAACTAACAAGCA+GGG | - | chr4.4:24895212-24895231 | MS.gene26430:intron | 40.0% | |
| TTATGCGCAAACTAACAAGC+AGG | - | chr4.4:24895211-24895230 | MS.gene26430:intron | 40.0% | |
| TTGAGTCGCTCGTTATATGT+AGG | + | chr4.4:24894062-24894081 | None:intergenic | 40.0% | |
| TTTACTTACCTAAGGAAGCC+TGG | + | chr4.4:24895045-24895064 | None:intergenic | 40.0% | |
| ! | AAAAGGGAGGAGTTAAGTTG+TGG | + | chr4.4:24895105-24895124 | None:intergenic | 40.0% |
| ! | AGGAAGCCTGGCAAATATTT+TGG | + | chr4.4:24895033-24895052 | None:intergenic | 40.0% |
| !! | ACTGGTGCTGATATAGTTAC+CGG | - | chr4.4:24895147-24895166 | MS.gene26430:intron | 40.0% |
| !! | GCAGTTGTTTTACAACATCC+TGG | + | chr4.4:24894471-24894490 | None:intergenic | 40.0% |
| ACCGGGACTCGTTATGTTAA+AGG | - | chr4.4:24895165-24895184 | MS.gene26430:intron | 45.0% | |
| ATGCGCAAACTAACAAGCAG+GGG | - | chr4.4:24895213-24895232 | MS.gene26430:intron | 45.0% | |
| ATGTAGCTGAACCCACTTAG+TGG | - | chr4.4:24894767-24894786 | MS.gene26430:intron | 45.0% | |
| CAGATTTGACAGGGTCTTTC+AGG | - | chr4.4:24895277-24895296 | MS.gene26430:intron | 45.0% | |
| CTCCCTGTTGATCACTTGAT+TGG | - | chr4.4:24895346-24895365 | MS.gene26430:CDS | 45.0% | |
| CTGCAGCCAAAATATTTGCC+AGG | - | chr4.4:24895024-24895043 | MS.gene26430:intron | 45.0% | |
| CTGGTGTCTCAGATTTGACA+GGG | - | chr4.4:24895268-24895287 | MS.gene26430:intron | 45.0% | |
| GCAACTGCACCTCTTCAATA+TGG | + | chr4.4:24895505-24895524 | None:intergenic | 45.0% | |
| GCAGGAACGGCTTATATTCA+TGG | - | chr4.4:24894833-24894852 | MS.gene26430:intron | 45.0% | |
| GGGACTCGTTATGTTAAAGG+TGG | - | chr4.4:24895168-24895187 | MS.gene26430:intron | 45.0% | |
| TACACTTTACAGATGCCTGC+TGG | - | chr4.4:24895758-24895777 | MS.gene26430:CDS | 45.0% | |
| TGAACCCACTTAGTGGGATA+AGG | - | chr4.4:24894774-24894793 | MS.gene26430:intron | 45.0% | |
| TGCAGCCACAGGAATATACA+CGG | + | chr4.4:24894632-24894651 | None:intergenic | 45.0% | |
| TGTAGCTGAACCCACTTAGT+GGG | - | chr4.4:24894768-24894787 | MS.gene26430:intron | 45.0% | |
| ! | ACTAAGTGGGTTCAGCTACA+TGG | + | chr4.4:24894768-24894787 | None:intergenic | 45.0% |
| ! | AGACCTAGGAAGATGGGTTT+AGG | - | chr4.4:24894665-24894684 | MS.gene26430:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr4.4:24894781-24894800 | None:intergenic | 45.0% |
| ! | GCACAAACACTTTTATGGCC+TGG | - | chr4.4:24895249-24895268 | MS.gene26430:intron | 45.0% |
| !! | CTGGTGCTGATATAGTTACC+GGG | - | chr4.4:24895148-24895167 | MS.gene26430:intron | 45.0% |
| AAGAGCGAGACCTAGGAAGA+TGG | - | chr4.4:24894658-24894677 | MS.gene26430:intron | 50.0% | |
| ACAACATCCTGGGTACCATC+AGG | + | chr4.4:24894460-24894479 | None:intergenic | 50.0% | |
| ACTTTACAGATGCCTGCTGG+TGG | - | chr4.4:24895761-24895780 | MS.gene26430:CDS | 50.0% | |
| AGAGCGAGACCTAGGAAGAT+GGG | - | chr4.4:24894659-24894678 | MS.gene26430:intron | 50.0% | |
| AGCTGTTAAGAGCGAGACCT+AGG | - | chr4.4:24894651-24894670 | MS.gene26430:intron | 50.0% | |
| CATGGCATGAAGCATGCATC+TGG | - | chr4.4:24894851-24894870 | MS.gene26430:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr4.4:24894779-24894798 | MS.gene26430:intron | 50.0% | |
| CCTGGTGTCTCAGATTTGAC+AGG | - | chr4.4:24895267-24895286 | MS.gene26430:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr4.4:24894782-24894801 | None:intergenic | 50.0% |
| ! | CCTGTCAAATCTGAGACACC+AGG | + | chr4.4:24895270-24895289 | None:intergenic | 50.0% |
| ! | GTTAAAGGTGGTGGTGTGCA+TGG | - | chr4.4:24895180-24895199 | MS.gene26430:intron | 50.0% |
| CTCTTAACAGCTGCAGCCAC+AGG | + | chr4.4:24894643-24894662 | None:intergenic | 55.0% | |
| ! | AAGGTGGTGGTGTGCATGGA+TGG | - | chr4.4:24895184-24895203 | MS.gene26430:intron | 55.0% |
| ! | GGGAGGAGTTAAGTTGTGGC+AGG | + | chr4.4:24895101-24895120 | None:intergenic | 55.0% |
| GTGGACGATGGGAGTCCTGA+TGG | - | chr4.4:24894442-24894461 | MS.gene26430:intron | 60.0% | |
| TGGGAGTCCTGATGGTACCC+AGG | - | chr4.4:24894450-24894469 | MS.gene26430:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 24894011 | 24895790 | 24894011 | ID=MS.gene26430 |
| chr4.4 | mRNA | 24894011 | 24895790 | 24894011 | ID=MS.gene26430.t1;Parent=MS.gene26430 |
| chr4.4 | exon | 24895681 | 24895790 | 24895681 | ID=MS.gene26430.t1.exon1;Parent=MS.gene26430.t1 |
| chr4.4 | CDS | 24895681 | 24895790 | 24895681 | ID=cds.MS.gene26430.t1;Parent=MS.gene26430.t1 |
| chr4.4 | exon | 24895285 | 24895384 | 24895285 | ID=MS.gene26430.t1.exon2;Parent=MS.gene26430.t1 |
| chr4.4 | CDS | 24895285 | 24895384 | 24895285 | ID=cds.MS.gene26430.t1;Parent=MS.gene26430.t1 |
| chr4.4 | exon | 24895115 | 24895148 | 24895115 | ID=MS.gene26430.t1.exon3;Parent=MS.gene26430.t1 |
| chr4.4 | CDS | 24895115 | 24895148 | 24895115 | ID=cds.MS.gene26430.t1;Parent=MS.gene26430.t1 |
| chr4.4 | exon | 24894888 | 24894964 | 24894888 | ID=MS.gene26430.t1.exon4;Parent=MS.gene26430.t1 |
| chr4.4 | CDS | 24894888 | 24894964 | 24894888 | ID=cds.MS.gene26430.t1;Parent=MS.gene26430.t1 |
| chr4.4 | exon | 24894746 | 24894771 | 24894746 | ID=MS.gene26430.t1.exon5;Parent=MS.gene26430.t1 |
| chr4.4 | CDS | 24894746 | 24894771 | 24894746 | ID=cds.MS.gene26430.t1;Parent=MS.gene26430.t1 |
| chr4.4 | exon | 24894503 | 24894667 | 24894503 | ID=MS.gene26430.t1.exon6;Parent=MS.gene26430.t1 |
| chr4.4 | CDS | 24894503 | 24894667 | 24894503 | ID=cds.MS.gene26430.t1;Parent=MS.gene26430.t1 |
| chr4.4 | exon | 24894287 | 24894401 | 24894287 | ID=MS.gene26430.t1.exon7;Parent=MS.gene26430.t1 |
| chr4.4 | CDS | 24894287 | 24894401 | 24894287 | ID=cds.MS.gene26430.t1;Parent=MS.gene26430.t1 |
| chr4.4 | exon | 24894011 | 24894031 | 24894011 | ID=MS.gene26430.t1.exon8;Parent=MS.gene26430.t1 |
| chr4.4 | CDS | 24894011 | 24894031 | 24894011 | ID=cds.MS.gene26430.t1;Parent=MS.gene26430.t1 |
| Gene Sequence |
| Protein sequence |
