Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26488.t1 | XP_013450218.1 | 98.2 | 439 | 8 | 0 | 1 | 439 | 1 | 439 | 7.40E-246 | 859.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26488.t1 | Q8RX01 | 59.6 | 443 | 172 | 5 | 1 | 438 | 1 | 441 | 7.2e-141 | 501.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26488.t1 | A0A072U4G5 | 98.2 | 439 | 8 | 0 | 1 | 439 | 1 | 439 | 5.3e-246 | 859.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene26488 | 0.817705 | 2.87E-52 | -1.69E-46 |
| MS.gene049178 | MS.gene26488 | 0.843047 | 1.78E-58 | -1.69E-46 |
| MS.gene049350 | MS.gene26488 | 0.801411 | 9.12E-49 | -1.69E-46 |
| MS.gene050439 | MS.gene26488 | 0.830077 | 3.60E-55 | -1.69E-46 |
| MS.gene051700 | MS.gene26488 | 0.816002 | 6.92E-52 | -1.69E-46 |
| MS.gene052586 | MS.gene26488 | 0.800248 | 1.58E-48 | -1.69E-46 |
| MS.gene054576 | MS.gene26488 | 0.802376 | 5.78E-49 | -1.69E-46 |
| MS.gene055313 | MS.gene26488 | 0.827968 | 1.17E-54 | -1.69E-46 |
| MS.gene055314 | MS.gene26488 | 0.809755 | 1.62E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene26488 | 0.800787 | 1.22E-48 | -1.69E-46 |
| MS.gene057360 | MS.gene26488 | 0.817992 | 2.47E-52 | -1.69E-46 |
| MS.gene060879 | MS.gene26488 | 0.802364 | 5.81E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26488.t1 | MTR_7g106330 | 98.178 | 439 | 8 | 0 | 1 | 439 | 1 | 439 | 0.0 | 882 |
| MS.gene26488.t1 | MTR_7g106330 | 90.888 | 439 | 8 | 1 | 1 | 439 | 1 | 407 | 0.0 | 797 |
| MS.gene26488.t1 | MTR_3g011800 | 41.912 | 272 | 151 | 4 | 160 | 428 | 6 | 273 | 6.75e-69 | 221 |
| MS.gene26488.t1 | MTR_3g011800 | 40.969 | 227 | 130 | 3 | 202 | 428 | 1 | 223 | 5.82e-55 | 182 |
| MS.gene26488.t1 | MTR_4g070010 | 24.348 | 460 | 260 | 17 | 13 | 421 | 50 | 472 | 1.10e-17 | 85.5 |
| MS.gene26488.t1 | MTR_8g098805 | 23.349 | 424 | 272 | 14 | 14 | 421 | 185 | 571 | 1.10e-16 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26488.t1 | AT3G05675 | 62.302 | 443 | 160 | 5 | 1 | 438 | 1 | 441 | 0.0 | 530 |
| MS.gene26488.t1 | AT3G05675 | 62.302 | 443 | 160 | 5 | 1 | 438 | 1 | 441 | 0.0 | 530 |
| MS.gene26488.t1 | AT3G05675 | 62.302 | 443 | 160 | 5 | 1 | 438 | 1 | 441 | 0.0 | 530 |
| MS.gene26488.t1 | AT4G10800 | 41.852 | 270 | 139 | 6 | 167 | 428 | 10 | 269 | 2.30e-62 | 203 |
| MS.gene26488.t1 | AT4G10800 | 41.767 | 249 | 132 | 5 | 183 | 428 | 8 | 246 | 1.03e-57 | 191 |
| MS.gene26488.t1 | AT1G63850 | 23.341 | 437 | 270 | 15 | 14 | 427 | 135 | 529 | 2.28e-17 | 84.7 |
Find 87 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGGATATCTGTGTAAT+TGG | 0.326783 | 7.3:+7847852 | MS.gene26488:CDS |
| ATCATTCTTGCATTGCCATC+AGG | 0.346115 | 7.3:+7848977 | MS.gene26488:CDS |
| CCATGACAAATCAGTCAAAT+AGG | 0.348445 | 7.3:-7848603 | None:intergenic |
| ACCGAGACGTTCCCTACTTC+AGG | 0.368218 | 7.3:-7848575 | None:intergenic |
| TTTGAAAATTGTACCGAGAA+TGG | 0.375149 | 7.3:+7848259 | MS.gene26488:CDS |
| GGATGCTGCGTTGCTTAAAA+TGG | 0.377981 | 7.3:+7848913 | MS.gene26488:CDS |
| ATATGTTTCTGATAGCTAAC+TGG | 0.387088 | 7.3:-7848325 | None:intergenic |
| TGACTGAGGCATTCGAAGTA+TGG | 0.393117 | 7.3:+7849059 | MS.gene26488:CDS |
| TGCATTGCCATCAGGGGATC+AGG | 0.394170 | 7.3:+7848985 | MS.gene26488:CDS |
| CTGATAGCTAACTGGTTAAC+CGG | 0.398560 | 7.3:-7848317 | None:intergenic |
| GGTTGGAAAACGAGAATATA+CGG | 0.406032 | 7.3:+7849026 | MS.gene26488:CDS |
| GCCAACTGCGAAACGTCTTA+AGG | 0.411212 | 7.3:+7848820 | MS.gene26488:CDS |
| TTGAAAATTGTACCGAGAAT+GGG | 0.421104 | 7.3:+7848260 | MS.gene26488:CDS |
| CTGATCGGCTATCTGAGAAT+TGG | 0.421865 | 7.3:+7847982 | MS.gene26488:CDS |
| CGCAAGAAGGTCGAGATGAT+TGG | 0.428744 | 7.3:+7847913 | MS.gene26488:CDS |
| GGCAGAATCAATCACTGGTT+TGG | 0.436374 | 7.3:-7848876 | None:intergenic |
| GAGAAGACTCTCATTGTTAG+AGG | 0.440113 | 7.3:+7849105 | MS.gene26488:CDS |
| TGGCGAAATGTGGCAATCTC+TGG | 0.442679 | 7.3:+7848937 | MS.gene26488:CDS |
| TTGCCATCAGGGGATCAGGC+AGG | 0.460011 | 7.3:+7848989 | MS.gene26488:CDS |
| AACCTTTGATGTTACCTCAA+TGG | 0.460071 | 7.3:-7848765 | None:intergenic |
| TGGCCAACTTGTCAGATACT+AGG | 0.460340 | 7.3:+7848002 | MS.gene26488:CDS |
| GATTTCAGATCATTCATTGC+CGG | 0.460656 | 7.3:-7848386 | None:intergenic |
| TGATGATAATATAAAATATG+AGG | 0.467539 | 7.3:+7848472 | MS.gene26488:CDS |
| TCGAATGCCTCAGTCAGGTC+TGG | 0.468523 | 7.3:-7849052 | None:intergenic |
| CTTCTGTACGTTGTGGTCGA+TGG | 0.471656 | 7.3:+7848092 | MS.gene26488:CDS |
| AAGAATGATAGAGACAAAAC+TGG | 0.473112 | 7.3:-7848963 | None:intergenic |
| CCTATTTGACTGATTTGTCA+TGG | 0.473152 | 7.3:+7848603 | MS.gene26488:CDS |
| ACCTTAAGACGTTTCGCAGT+TGG | 0.488387 | 7.3:-7848821 | None:intergenic |
| TGCTACATCGTCGCCTCCAC+CGG | 0.488415 | 7.3:+7848367 | MS.gene26488:CDS |
| CTATTTGACTGATTTGTCAT+GGG | 0.491380 | 7.3:+7848604 | MS.gene26488:CDS |
| ACAGAATCACTTCCTGAAGT+AGG | 0.496024 | 7.3:+7848563 | MS.gene26488:CDS |
| AGATCATTCATTGCCGGTGG+AGG | 0.499953 | 7.3:-7848380 | None:intergenic |
| ATGGTTCAGTTGATGATTTG+TGG | 0.499974 | 7.3:+7848111 | MS.gene26488:CDS |
| TATCATCAGCGATCAACAAA+GGG | 0.504276 | 7.3:-7848457 | None:intergenic |
| GGTTTGGTAACCCTCACAAA+TGG | 0.504480 | 7.3:-7848860 | None:intergenic |
| TATCCTAGCTAGACTTCAAC+CGG | 0.505035 | 7.3:+7848298 | MS.gene26488:CDS |
| GAGTCTTCTCCTTGCAACCT+TGG | 0.515051 | 7.3:-7849092 | None:intergenic |
| TCAGTTGATGATTTGTGGCA+TGG | 0.516798 | 7.3:+7848116 | MS.gene26488:CDS |
| ATACTTCGAATGCCTCAGTC+AGG | 0.520495 | 7.3:-7849057 | None:intergenic |
| TCAGCTTGTAATCCCATTCT+CGG | 0.521850 | 7.3:-7848272 | None:intergenic |
| TGCTGCGTGTGTGAAATACT+TGG | 0.525981 | 7.3:+7848199 | MS.gene26488:CDS |
| ATGGGAAGAGAGTGAAGAGG+AGG | 0.529090 | 7.3:+7848232 | MS.gene26488:CDS |
| TCATTCTTGCATTGCCATCA+GGG | 0.532419 | 7.3:+7848978 | MS.gene26488:CDS |
| TGCCATCAGGGGATCAGGCA+GGG | 0.532443 | 7.3:+7848990 | MS.gene26488:CDS |
| AATTGTGGCTTCCATTTGTG+AGG | 0.547715 | 7.3:+7848849 | MS.gene26488:CDS |
| CAGAATCACTTCCTGAAGTA+GGG | 0.548080 | 7.3:+7848564 | MS.gene26488:CDS |
| TATCAGAAACATATTTCTCT+CGG | 0.549893 | 7.3:+7848334 | MS.gene26488:CDS |
| TGAGTACTGGTTTGATGCAT+CGG | 0.555681 | 7.3:+7848670 | MS.gene26488:CDS |
| GATAAAGTTGCGAGCCATTG+AGG | 0.559973 | 7.3:+7848751 | MS.gene26488:CDS |
| GTTATAGATCCAAGGTTGCA+AGG | 0.561101 | 7.3:+7849083 | MS.gene26488:CDS |
| GAACCTAGTATCTGACAAGT+TGG | 0.564864 | 7.3:-7848005 | None:intergenic |
| CCACAACATCACTAGTTGAT+CGG | 0.567045 | 7.3:-7847878 | None:intergenic |
| TAACCGGTTGAAGTCTAGCT+AGG | 0.567773 | 7.3:-7848301 | None:intergenic |
| GTCATGGCAGAATCAATCAC+TGG | 0.572683 | 7.3:-7848881 | None:intergenic |
| TTCAGATCATTCATTGCCGG+TGG | 0.572901 | 7.3:-7848383 | None:intergenic |
| AGCCATTGAGGTAACATCAA+AGG | 0.577241 | 7.3:+7848763 | MS.gene26488:CDS |
| AATTAAGGATAAGGACGAGA+AGG | 0.585063 | 7.3:+7847836 | MS.gene26488:intron |
| CATGGTGTTAGAAATGCTCT+TGG | 0.588296 | 7.3:+7848134 | MS.gene26488:CDS |
| GGTTGAAGTCTAGCTAGGAT+AGG | 0.590203 | 7.3:-7848296 | None:intergenic |
| CATTCTTGCATTGCCATCAG+GGG | 0.594583 | 7.3:+7848979 | MS.gene26488:CDS |
| AGCCCTGCCTGATCCCCTGA+TGG | 0.596176 | 7.3:-7848992 | None:intergenic |
| TTATCATCAGCGATCAACAA+AGG | 0.597255 | 7.3:-7848458 | None:intergenic |
| GTGAGGCTACGCACGCAAGA+AGG | 0.597661 | 7.3:+7847900 | MS.gene26488:CDS |
| AGTATGGTGTTATAGATCCA+AGG | 0.604280 | 7.3:+7849075 | MS.gene26488:CDS |
| AATACTTGGAAGCAATGACA+TGG | 0.605753 | 7.3:+7848213 | MS.gene26488:CDS |
| TATTCGACTTCTGTACGTTG+TGG | 0.606306 | 7.3:+7848085 | MS.gene26488:CDS |
| TACTTCAGGAAGTGATTCTG+TGG | 0.609640 | 7.3:-7848561 | None:intergenic |
| GCTGCGTTGCTTAAAATGGA+TGG | 0.619104 | 7.3:+7848917 | MS.gene26488:CDS |
| GAAGTCGAATAAAGTTTACA+TGG | 0.621468 | 7.3:-7848073 | None:intergenic |
| ACTGGTTTGATGCATCGGAA+AGG | 0.623195 | 7.3:+7848675 | MS.gene26488:CDS |
| TATCAATGAGTTGTTAAACC+CGG | 0.624215 | 7.3:-7848522 | None:intergenic |
| CCGATCAACTAGTGATGTTG+TGG | 0.627570 | 7.3:+7847878 | MS.gene26488:CDS |
| CGACGATGTAGCAAAACGGA+TGG | 0.632476 | 7.3:-7848357 | None:intergenic |
| AGCATCCTCACAATTCGTCA+TGG | 0.633088 | 7.3:-7848897 | None:intergenic |
| TCCTGAAGTAGGGAACGTCT+CGG | 0.633628 | 7.3:+7848574 | MS.gene26488:CDS |
| GAGGCGACGATGTAGCAAAA+CGG | 0.635778 | 7.3:-7848361 | None:intergenic |
| TCATTGATACATTTACTCTG+TGG | 0.641194 | 7.3:+7848536 | MS.gene26488:CDS |
| ATTGTGGCTTCCATTTGTGA+GGG | 0.644880 | 7.3:+7848850 | MS.gene26488:CDS |
| TTAAAATGGATGGCGAAATG+TGG | 0.673164 | 7.3:+7848927 | MS.gene26488:CDS |
| ATACTTGGAAGCAATGACAT+GGG | 0.673251 | 7.3:+7848214 | MS.gene26488:CDS |
| GACATGGGAAGAGAGTGAAG+AGG | 0.683633 | 7.3:+7848229 | MS.gene26488:CDS |
| AAAGTACTTGAACTTGAACA+AGG | 0.686492 | 7.3:+7848704 | MS.gene26488:CDS |
| ATCATCAGCGATCAACAAAG+GGG | 0.702082 | 7.3:-7848456 | None:intergenic |
| TTCTGCCATGACGAATTGTG+AGG | 0.703220 | 7.3:+7848892 | MS.gene26488:CDS |
| CAACTAGTGATGTTGTGGTG+AGG | 0.729111 | 7.3:+7847883 | MS.gene26488:CDS |
| ACGGTATCCAGACCTGACTG+AGG | 0.735150 | 7.3:+7849045 | MS.gene26488:CDS |
| ACTTGAGTACATGCTAACTG+AGG | 0.740737 | 7.3:+7848424 | MS.gene26488:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACACTTCAATAATAATAAA+TGG | - | chr7.3:7847354-7847373 | None:intergenic | 15.0% |
| !! | TGATGATAATATAAAATATG+AGG | + | chr7.3:7848472-7848491 | MS.gene26488:CDS | 15.0% |
| !!! | TCAATAATAATAAATGGATT+TGG | - | chr7.3:7847348-7847367 | None:intergenic | 15.0% |
| !! | AAGATTATCCTCTTTAATTA+AGG | + | chr7.3:7847821-7847840 | MS.gene26488:intron | 20.0% |
| !! | AATATGTTTACTCTCAATTT+AGG | - | chr7.3:7847444-7847463 | None:intergenic | 20.0% |
| !! | AATTCTTTCATATCTTCAAT+TGG | + | chr7.3:7847314-7847333 | MS.gene26488:intron | 20.0% |
| !! | ATATGAAATTTGAAGAAAAG+TGG | - | chr7.3:7847024-7847043 | None:intergenic | 20.0% |
| !! | TATCATTACTCCTAAATTTA+TGG | + | chr7.3:7847628-7847647 | MS.gene26488:intron | 20.0% |
| !! | TATTACTAATTACAGATAAG+AGG | - | chr7.3:7847802-7847821 | None:intergenic | 20.0% |
| ! | AGATATGAAAGAATTGACAT+AGG | - | chr7.3:7847309-7847328 | None:intergenic | 25.0% |
| ! | ATCCTCTTTAATTAAGGATA+AGG | + | chr7.3:7847827-7847846 | MS.gene26488:intron | 25.0% |
| ! | ATTCATATTATTGCTCTGTT+TGG | + | chr7.3:7847044-7847063 | MS.gene26488:intron | 25.0% |
| ! | CAAATAAACCAATCCAAAAA+TGG | + | chr7.3:7847282-7847301 | MS.gene26488:intron | 25.0% |
| ! | GATATGAAAGAATTGACATA+GGG | - | chr7.3:7847308-7847327 | None:intergenic | 25.0% |
| ! | TATCAGAAACATATTTCTCT+CGG | + | chr7.3:7848334-7848353 | MS.gene26488:CDS | 25.0% |
| ! | TCATAAAAGTTGAGACAAAA+TGG | - | chr7.3:7847474-7847493 | None:intergenic | 25.0% |
| !! | GTATAAGCTATAAGCTATTT+TGG | + | chr7.3:7847172-7847191 | MS.gene26488:intron | 25.0% |
| !! | TGTGTAAAAAGACTATTTTC+CGG | + | chr7.3:7848503-7848522 | MS.gene26488:CDS | 25.0% |
| !! | TTAAAGAGTGTAAAAAACCT+CGG | - | chr7.3:7847758-7847777 | None:intergenic | 25.0% |
| AAAGTGGAAAAGCAAACTTA+CGG | - | chr7.3:7847008-7847027 | None:intergenic | 30.0% | |
| AAGAATGATAGAGACAAAAC+TGG | - | chr7.3:7848966-7848985 | None:intergenic | 30.0% | |
| ATGATAAGTGCTTAAGCTAA+CGG | - | chr7.3:7847090-7847109 | None:intergenic | 30.0% | |
| GAAGTCGAATAAAGTTTACA+TGG | - | chr7.3:7848076-7848095 | None:intergenic | 30.0% | |
| GTCCTTATCCTTAATTAAAG+AGG | - | chr7.3:7847832-7847851 | None:intergenic | 30.0% | |
| TATCAATGAGTTGTTAAACC+CGG | - | chr7.3:7848525-7848544 | None:intergenic | 30.0% | |
| TCATTGATACATTTACTCTG+TGG | + | chr7.3:7848536-7848555 | MS.gene26488:CDS | 30.0% | |
| TCTCAAAAGTTGTCACAAAA+TGG | + | chr7.3:7847596-7847615 | MS.gene26488:intron | 30.0% | |
| TTGAAAATTGTACCGAGAAT+GGG | + | chr7.3:7848260-7848279 | MS.gene26488:CDS | 30.0% | |
| TTTGAAAATTGTACCGAGAA+TGG | + | chr7.3:7848259-7848278 | MS.gene26488:CDS | 30.0% | |
| ! | AAAGTACTTGAACTTGAACA+AGG | + | chr7.3:7848704-7848723 | MS.gene26488:CDS | 30.0% |
| ! | AATAATAAATGGATTTGGCC+AGG | - | chr7.3:7847343-7847362 | None:intergenic | 30.0% |
| ! | ATATGTTTCTGATAGCTAAC+TGG | - | chr7.3:7848328-7848347 | None:intergenic | 30.0% |
| ! | ATTGCAAGTATTTTGCTGAT+CGG | + | chr7.3:7847967-7847986 | MS.gene26488:CDS | 30.0% |
| ! | GTGTAAAAAGACTATTTTCC+GGG | + | chr7.3:7848504-7848523 | MS.gene26488:CDS | 30.0% |
| ! | TTGATTTTGTCCCAAAACAA+GGG | - | chr7.3:7847508-7847527 | None:intergenic | 30.0% |
| !! | ATTGATTTTGTCCCAAAACA+AGG | - | chr7.3:7847509-7847528 | None:intergenic | 30.0% |
| !! | CTATTTGACTGATTTGTCAT+GGG | + | chr7.3:7848604-7848623 | MS.gene26488:CDS | 30.0% |
| !!! | GTCTTAAGGTTTTGAAATTG+TGG | + | chr7.3:7848834-7848853 | MS.gene26488:CDS | 30.0% |
| AAAATCAATAGAGCGAGAGA+GGG | + | chr7.3:7847520-7847539 | MS.gene26488:intron | 35.0% | |
| AACCTTTGATGTTACCTCAA+TGG | - | chr7.3:7848768-7848787 | None:intergenic | 35.0% | |
| AATACCGACGCCATAAATTT+AGG | - | chr7.3:7847641-7847660 | None:intergenic | 35.0% | |
| AATACTTGGAAGCAATGACA+TGG | + | chr7.3:7848213-7848232 | MS.gene26488:CDS | 35.0% | |
| AATTAAGGATAAGGACGAGA+AGG | + | chr7.3:7847836-7847855 | MS.gene26488:intron | 35.0% | |
| ATACTTGGAAGCAATGACAT+GGG | + | chr7.3:7848214-7848233 | MS.gene26488:CDS | 35.0% | |
| CATATCTTCAATTGGATTCC+TGG | + | chr7.3:7847322-7847341 | MS.gene26488:intron | 35.0% | |
| CCATGACAAATCAGTCAAAT+AGG | - | chr7.3:7848606-7848625 | None:intergenic | 35.0% | |
| CTAACTTCTTCTACTAACTG+AGG | - | chr7.3:7847686-7847705 | None:intergenic | 35.0% | |
| GAGAAGGATATCTGTGTAAT+TGG | + | chr7.3:7847852-7847871 | MS.gene26488:CDS | 35.0% | |
| GATTTCAGATCATTCATTGC+CGG | - | chr7.3:7848389-7848408 | None:intergenic | 35.0% | |
| GGTTGGAAAACGAGAATATA+CGG | + | chr7.3:7849026-7849045 | MS.gene26488:CDS | 35.0% | |
| TACTCCTAAATTTATGGCGT+CGG | + | chr7.3:7847634-7847653 | MS.gene26488:intron | 35.0% | |
| TATCATCAGCGATCAACAAA+GGG | - | chr7.3:7848460-7848479 | None:intergenic | 35.0% | |
| TTAAAATGGATGGCGAAATG+TGG | + | chr7.3:7848927-7848946 | MS.gene26488:CDS | 35.0% | |
| TTATCATCAGCGATCAACAA+AGG | - | chr7.3:7848461-7848480 | None:intergenic | 35.0% | |
| ! | TGAGAGATTTTGTTGAGTAC+TGG | + | chr7.3:7848657-7848676 | MS.gene26488:CDS | 35.0% |
| ! | TGATTTTGTCCCAAAACAAG+GGG | - | chr7.3:7847507-7847526 | None:intergenic | 35.0% |
| !! | AATTGACATAGGGCCATTTT+TGG | - | chr7.3:7847298-7847317 | None:intergenic | 35.0% |
| !! | AGTATGGTGTTATAGATCCA+AGG | + | chr7.3:7849075-7849094 | MS.gene26488:CDS | 35.0% |
| !! | ATGGTTCAGTTGATGATTTG+TGG | + | chr7.3:7848111-7848130 | MS.gene26488:CDS | 35.0% |
| !! | CCTATTTGACTGATTTGTCA+TGG | + | chr7.3:7848603-7848622 | MS.gene26488:CDS | 35.0% |
| !! | GGTAACATCAAAGGTTTTAG+AGG | + | chr7.3:7848772-7848791 | MS.gene26488:CDS | 35.0% |
| !!! | GTTTTAGAGGCAATTGCTTA+TGG | + | chr7.3:7848785-7848804 | MS.gene26488:CDS | 35.0% |
| AATTGTGGCTTCCATTTGTG+AGG | + | chr7.3:7848849-7848868 | MS.gene26488:CDS | 40.0% | |
| ACAGAATCACTTCCTGAAGT+AGG | + | chr7.3:7848563-7848582 | MS.gene26488:CDS | 40.0% | |
| ACTTGAGTACATGCTAACTG+AGG | + | chr7.3:7848424-7848443 | MS.gene26488:CDS | 40.0% | |
| AGCCATTGAGGTAACATCAA+AGG | + | chr7.3:7848763-7848782 | MS.gene26488:CDS | 40.0% | |
| ATCATCAGCGATCAACAAAG+GGG | - | chr7.3:7848459-7848478 | None:intergenic | 40.0% | |
| ATCATTCTTGCATTGCCATC+AGG | + | chr7.3:7848977-7848996 | MS.gene26488:CDS | 40.0% | |
| ATTGTGGCTTCCATTTGTGA+GGG | + | chr7.3:7848850-7848869 | MS.gene26488:CDS | 40.0% | |
| CAAAATCAATAGAGCGAGAG+AGG | + | chr7.3:7847519-7847538 | MS.gene26488:intron | 40.0% | |
| CAGAATCACTTCCTGAAGTA+GGG | + | chr7.3:7848564-7848583 | MS.gene26488:CDS | 40.0% | |
| CCACAACATCACTAGTTGAT+CGG | - | chr7.3:7847881-7847900 | None:intergenic | 40.0% | |
| CTAACTTCTTCTACTAACCG+AGG | + | chr7.3:7847738-7847757 | MS.gene26488:intron | 40.0% | |
| CTGATAGCTAACTGGTTAAC+CGG | - | chr7.3:7848320-7848339 | None:intergenic | 40.0% | |
| GAACCTAGTATCTGACAAGT+TGG | - | chr7.3:7848008-7848027 | None:intergenic | 40.0% | |
| GAGAAGACTCTCATTGTTAG+AGG | + | chr7.3:7849105-7849124 | MS.gene26488:CDS | 40.0% | |
| GTTATAGATCCAAGGTTGCA+AGG | + | chr7.3:7849083-7849102 | MS.gene26488:CDS | 40.0% | |
| TACTTCAGGAAGTGATTCTG+TGG | - | chr7.3:7848564-7848583 | None:intergenic | 40.0% | |
| TATCCTAGCTAGACTTCAAC+CGG | + | chr7.3:7848298-7848317 | MS.gene26488:CDS | 40.0% | |
| TATTCGACTTCTGTACGTTG+TGG | + | chr7.3:7848085-7848104 | MS.gene26488:CDS | 40.0% | |
| TCAGCTTGTAATCCCATTCT+CGG | - | chr7.3:7848275-7848294 | None:intergenic | 40.0% | |
| TCATTCTTGCATTGCCATCA+GGG | + | chr7.3:7848978-7848997 | MS.gene26488:CDS | 40.0% | |
| TGGAAAAGCAAACTTACGGT+AGG | - | chr7.3:7847004-7847023 | None:intergenic | 40.0% | |
| ! | ACACACGCAGCAACAATTTT+CGG | - | chr7.3:7848191-7848210 | None:intergenic | 40.0% |
| ! | CATGGTGTTAGAAATGCTCT+TGG | + | chr7.3:7848134-7848153 | MS.gene26488:CDS | 40.0% |
| !! | AGGGCTTTTAACTGAATGGT+TGG | + | chr7.3:7849009-7849028 | MS.gene26488:CDS | 40.0% |
| !! | TCAGTTGATGATTTGTGGCA+TGG | + | chr7.3:7848116-7848135 | MS.gene26488:CDS | 40.0% |
| !! | TGAGTACTGGTTTGATGCAT+CGG | + | chr7.3:7848670-7848689 | MS.gene26488:CDS | 40.0% |
| !!! | AACCTTCATCCCCTTGTTTT+GGG | + | chr7.3:7847495-7847514 | MS.gene26488:intron | 40.0% |
| !!! | ACATAGGGCCATTTTTGGAT+TGG | - | chr7.3:7847293-7847312 | None:intergenic | 40.0% |
| ACCTTAAGACGTTTCGCAGT+TGG | - | chr7.3:7848824-7848843 | None:intergenic | 45.0% | |
| AGAGGAGAGACTCTGACTAT+TGG | - | chr7.3:7847784-7847803 | None:intergenic | 45.0% | |
| AGCATCCTCACAATTCGTCA+TGG | - | chr7.3:7848900-7848919 | None:intergenic | 45.0% | |
| ATACTTCGAATGCCTCAGTC+AGG | - | chr7.3:7849060-7849079 | None:intergenic | 45.0% | |
| CAACTAGTGATGTTGTGGTG+AGG | + | chr7.3:7847883-7847902 | MS.gene26488:CDS | 45.0% | |
| CATTCTTGCATTGCCATCAG+GGG | + | chr7.3:7848979-7848998 | MS.gene26488:CDS | 45.0% | |
| CCGATCAACTAGTGATGTTG+TGG | + | chr7.3:7847878-7847897 | MS.gene26488:CDS | 45.0% | |
| CTGATCGGCTATCTGAGAAT+TGG | + | chr7.3:7847982-7848001 | MS.gene26488:CDS | 45.0% | |
| GAGGAGAGACTCTGACTATT+GGG | - | chr7.3:7847783-7847802 | None:intergenic | 45.0% | |
| GATAAAGTTGCGAGCCATTG+AGG | + | chr7.3:7848751-7848770 | MS.gene26488:CDS | 45.0% | |
| GCTGCGTTGCTTAAAATGGA+TGG | + | chr7.3:7848917-7848936 | MS.gene26488:CDS | 45.0% | |
| GGATGCTGCGTTGCTTAAAA+TGG | + | chr7.3:7848913-7848932 | MS.gene26488:CDS | 45.0% | |
| GGTTGAAGTCTAGCTAGGAT+AGG | - | chr7.3:7848299-7848318 | None:intergenic | 45.0% | |
| GTCATGGCAGAATCAATCAC+TGG | - | chr7.3:7848884-7848903 | None:intergenic | 45.0% | |
| TAACCGGTTGAAGTCTAGCT+AGG | - | chr7.3:7848304-7848323 | None:intergenic | 45.0% | |
| TGCTGCGTGTGTGAAATACT+TGG | + | chr7.3:7848199-7848218 | MS.gene26488:CDS | 45.0% | |
| TGGCCAACTTGTCAGATACT+AGG | + | chr7.3:7848002-7848021 | MS.gene26488:CDS | 45.0% | |
| TTCAGATCATTCATTGCCGG+TGG | - | chr7.3:7848386-7848405 | None:intergenic | 45.0% | |
| TTCTGCCATGACGAATTGTG+AGG | + | chr7.3:7848892-7848911 | MS.gene26488:CDS | 45.0% | |
| ! | GGCAGAATCAATCACTGGTT+TGG | - | chr7.3:7848879-7848898 | None:intergenic | 45.0% |
| ! | GGTTTGGTAACCCTCACAAA+TGG | - | chr7.3:7848863-7848882 | None:intergenic | 45.0% |
| ! | TGACTGAGGCATTCGAAGTA+TGG | + | chr7.3:7849059-7849078 | MS.gene26488:CDS | 45.0% |
| !! | ACTGGTTTGATGCATCGGAA+AGG | + | chr7.3:7848675-7848694 | MS.gene26488:CDS | 45.0% |
| !! | AGGCAGGGCTTTTAACTGAA+TGG | + | chr7.3:7849005-7849024 | MS.gene26488:CDS | 45.0% |
| !! | CAACCTTCATCCCCTTGTTT+TGG | + | chr7.3:7847494-7847513 | MS.gene26488:intron | 45.0% |
| AATAGAGCGAGAGAGGGAGA+GGG | + | chr7.3:7847526-7847545 | MS.gene26488:intron | 50.0% | |
| AGATCATTCATTGCCGGTGG+AGG | - | chr7.3:7848383-7848402 | None:intergenic | 50.0% | |
| ATGGGAAGAGAGTGAAGAGG+AGG | + | chr7.3:7848232-7848251 | MS.gene26488:CDS | 50.0% | |
| CGACGATGTAGCAAAACGGA+TGG | - | chr7.3:7848360-7848379 | None:intergenic | 50.0% | |
| CGCAAGAAGGTCGAGATGAT+TGG | + | chr7.3:7847913-7847932 | MS.gene26488:CDS | 50.0% | |
| CTTCTGTACGTTGTGGTCGA+TGG | + | chr7.3:7848092-7848111 | MS.gene26488:CDS | 50.0% | |
| GACATGGGAAGAGAGTGAAG+AGG | + | chr7.3:7848229-7848248 | MS.gene26488:CDS | 50.0% | |
| GAGGCGACGATGTAGCAAAA+CGG | - | chr7.3:7848364-7848383 | None:intergenic | 50.0% | |
| GAGTCTTCTCCTTGCAACCT+TGG | - | chr7.3:7849095-7849114 | None:intergenic | 50.0% | |
| GCCAACTGCGAAACGTCTTA+AGG | + | chr7.3:7848820-7848839 | MS.gene26488:CDS | 50.0% | |
| GTCCCAAAACAAGGGGATGA+AGG | - | chr7.3:7847500-7847519 | None:intergenic | 50.0% | |
| TCCTGAAGTAGGGAACGTCT+CGG | + | chr7.3:7848574-7848593 | MS.gene26488:CDS | 50.0% | |
| TGGCGAAATGTGGCAATCTC+TGG | + | chr7.3:7848937-7848956 | MS.gene26488:CDS | 50.0% | |
| ACCGAGACGTTCCCTACTTC+AGG | - | chr7.3:7848578-7848597 | None:intergenic | 55.0% | |
| ACGGTATCCAGACCTGACTG+AGG | + | chr7.3:7849045-7849064 | MS.gene26488:CDS | 55.0% | |
| CAATAGAGCGAGAGAGGGAG+AGG | + | chr7.3:7847525-7847544 | MS.gene26488:intron | 55.0% | |
| TCGAATGCCTCAGTCAGGTC+TGG | - | chr7.3:7849055-7849074 | None:intergenic | 55.0% | |
| TGCATTGCCATCAGGGGATC+AGG | + | chr7.3:7848985-7849004 | MS.gene26488:CDS | 55.0% | |
| GTGAGGCTACGCACGCAAGA+AGG | + | chr7.3:7847900-7847919 | MS.gene26488:CDS | 60.0% | |
| TGCCATCAGGGGATCAGGCA+GGG | + | chr7.3:7848990-7849009 | MS.gene26488:CDS | 60.0% | |
| TGCTACATCGTCGCCTCCAC+CGG | + | chr7.3:7848367-7848386 | MS.gene26488:CDS | 60.0% | |
| TTGCCATCAGGGGATCAGGC+AGG | + | chr7.3:7848989-7849008 | MS.gene26488:CDS | 60.0% | |
| AGCCCTGCCTGATCCCCTGA+TGG | - | chr7.3:7848995-7849014 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 7846995 | 7849150 | 7846995 | ID=MS.gene26488 |
| chr7.3 | mRNA | 7846995 | 7849150 | 7846995 | ID=MS.gene26488.t1;Parent=MS.gene26488 |
| chr7.3 | exon | 7846995 | 7847006 | 7846995 | ID=MS.gene26488.t1.exon1;Parent=MS.gene26488.t1 |
| chr7.3 | CDS | 7846995 | 7847006 | 7846995 | ID=cds.MS.gene26488.t1;Parent=MS.gene26488.t1 |
| chr7.3 | exon | 7847843 | 7849150 | 7847843 | ID=MS.gene26488.t1.exon2;Parent=MS.gene26488.t1 |
| chr7.3 | CDS | 7847843 | 7849150 | 7847843 | ID=cds.MS.gene26488.t1;Parent=MS.gene26488.t1 |
| Gene Sequence |
| Protein sequence |
