Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26578.t1 | XP_003608087.1 | 95.6 | 364 | 16 | 0 | 1 | 364 | 1 | 364 | 6.20E-190 | 673.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26578.t1 | Q43725 | 71.7 | 361 | 102 | 0 | 3 | 363 | 69 | 429 | 8.1e-146 | 518.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26578.t1 | G7JNN6 | 95.6 | 364 | 16 | 0 | 1 | 364 | 1 | 364 | 4.5e-190 | 673.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene26578 | 0.83726 | 5.77E-57 | -1.69E-46 |
| MS.gene05240 | MS.gene26578 | 0.805163 | 1.52E-49 | -1.69E-46 |
| MS.gene052606 | MS.gene26578 | 0.808622 | 2.83E-50 | -1.69E-46 |
| MS.gene052702 | MS.gene26578 | 0.824744 | 6.84E-54 | -1.69E-46 |
| MS.gene054181 | MS.gene26578 | 0.80486 | 1.76E-49 | -1.69E-46 |
| MS.gene056697 | MS.gene26578 | 0.828784 | 7.42E-55 | -1.69E-46 |
| MS.gene059401 | MS.gene26578 | 0.80083 | 1.20E-48 | -1.69E-46 |
| MS.gene060593 | MS.gene26578 | 0.827436 | 1.57E-54 | -1.69E-46 |
| MS.gene061044 | MS.gene26578 | 0.800766 | 1.24E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26578.t1 | MTR_4g087490 | 96.317 | 353 | 13 | 0 | 12 | 364 | 12 | 364 | 0.0 | 695 |
| MS.gene26578.t1 | MTR_4g087510 | 88.187 | 364 | 34 | 2 | 1 | 364 | 1 | 355 | 0.0 | 650 |
| MS.gene26578.t1 | MTR_4g087520 | 82.593 | 270 | 47 | 0 | 95 | 364 | 1 | 270 | 4.98e-155 | 437 |
| MS.gene26578.t1 | MTR_5g006340 | 70.440 | 318 | 94 | 0 | 47 | 364 | 8 | 325 | 1.66e-153 | 435 |
| MS.gene26578.t1 | MTR_1g103690 | 70.440 | 318 | 94 | 0 | 47 | 364 | 8 | 325 | 7.10e-153 | 433 |
| MS.gene26578.t1 | MTR_1g081610 | 71.384 | 318 | 91 | 0 | 43 | 360 | 4 | 321 | 8.94e-153 | 433 |
| MS.gene26578.t1 | MTR_1g081620 | 63.376 | 314 | 115 | 0 | 47 | 360 | 7 | 320 | 7.19e-143 | 408 |
| MS.gene26578.t1 | MTR_7g087110 | 57.835 | 351 | 135 | 2 | 10 | 360 | 31 | 368 | 5.62e-138 | 397 |
| MS.gene26578.t1 | MTR_1g081625 | 63.376 | 314 | 115 | 0 | 47 | 360 | 7 | 320 | 8.49e-138 | 395 |
| MS.gene26578.t1 | MTR_7g078070 | 59.621 | 317 | 128 | 0 | 46 | 362 | 60 | 376 | 1.38e-134 | 389 |
| MS.gene26578.t1 | MTR_7g078070 | 60.323 | 310 | 123 | 0 | 53 | 362 | 7 | 316 | 5.10e-133 | 383 |
| MS.gene26578.t1 | MTR_7g078070 | 60.777 | 283 | 111 | 0 | 80 | 362 | 1 | 283 | 2.38e-122 | 354 |
| MS.gene26578.t1 | MTR_1g081640 | 60.791 | 278 | 109 | 0 | 47 | 324 | 7 | 284 | 5.46e-111 | 327 |
| MS.gene26578.t1 | MTR_5g095670 | 27.887 | 355 | 197 | 6 | 49 | 346 | 46 | 398 | 2.17e-38 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26578.t1 | AT3G59760 | 73.639 | 349 | 90 | 1 | 17 | 363 | 81 | 429 | 0.0 | 511 |
| MS.gene26578.t1 | AT3G59760 | 73.639 | 349 | 90 | 1 | 17 | 363 | 81 | 429 | 0.0 | 510 |
| MS.gene26578.t1 | AT2G43750 | 76.636 | 321 | 75 | 0 | 43 | 363 | 71 | 391 | 1.01e-176 | 496 |
| MS.gene26578.t1 | AT2G43750 | 76.636 | 321 | 75 | 0 | 43 | 363 | 71 | 391 | 1.01e-176 | 496 |
| MS.gene26578.t1 | AT3G59760 | 72.897 | 321 | 85 | 1 | 17 | 335 | 81 | 401 | 2.29e-162 | 461 |
| MS.gene26578.t1 | AT4G14880 | 66.246 | 317 | 107 | 0 | 47 | 363 | 5 | 321 | 5.93e-148 | 421 |
| MS.gene26578.t1 | AT4G14880 | 66.246 | 317 | 107 | 0 | 47 | 363 | 5 | 321 | 5.93e-148 | 421 |
| MS.gene26578.t1 | AT4G14880 | 66.246 | 317 | 107 | 0 | 47 | 363 | 5 | 321 | 5.93e-148 | 421 |
| MS.gene26578.t1 | AT4G14880 | 66.246 | 317 | 107 | 0 | 47 | 363 | 5 | 321 | 5.93e-148 | 421 |
| MS.gene26578.t1 | AT4G14880 | 66.246 | 317 | 107 | 0 | 47 | 363 | 5 | 321 | 5.93e-148 | 421 |
| MS.gene26578.t1 | AT3G04940 | 64.151 | 318 | 114 | 0 | 43 | 360 | 4 | 321 | 2.98e-139 | 399 |
| MS.gene26578.t1 | AT3G04940 | 64.151 | 318 | 114 | 0 | 43 | 360 | 4 | 321 | 2.98e-139 | 399 |
| MS.gene26578.t1 | AT5G28020 | 64.151 | 318 | 114 | 0 | 43 | 360 | 3 | 320 | 3.05e-138 | 396 |
| MS.gene26578.t1 | AT5G28020 | 64.151 | 318 | 114 | 0 | 43 | 360 | 3 | 320 | 3.05e-138 | 396 |
| MS.gene26578.t1 | AT5G28020 | 64.151 | 318 | 114 | 0 | 43 | 360 | 3 | 320 | 3.05e-138 | 396 |
| MS.gene26578.t1 | AT5G28020 | 64.151 | 318 | 114 | 0 | 43 | 360 | 3 | 320 | 3.05e-138 | 396 |
| MS.gene26578.t1 | AT5G28020 | 64.151 | 318 | 114 | 0 | 43 | 360 | 3 | 320 | 3.05e-138 | 396 |
| MS.gene26578.t1 | AT5G28030 | 62.617 | 321 | 120 | 0 | 43 | 363 | 3 | 323 | 2.60e-135 | 389 |
| MS.gene26578.t1 | AT5G28030 | 62.617 | 321 | 120 | 0 | 43 | 363 | 3 | 323 | 2.60e-135 | 389 |
| MS.gene26578.t1 | AT5G28030 | 62.617 | 321 | 120 | 0 | 43 | 363 | 3 | 323 | 2.60e-135 | 389 |
| MS.gene26578.t1 | AT5G28030 | 62.617 | 321 | 120 | 0 | 43 | 363 | 3 | 323 | 2.60e-135 | 389 |
| MS.gene26578.t1 | AT3G61440 | 53.760 | 359 | 154 | 4 | 14 | 362 | 8 | 364 | 5.23e-128 | 372 |
| MS.gene26578.t1 | AT3G03630 | 58.438 | 320 | 123 | 1 | 42 | 361 | 94 | 403 | 8.09e-123 | 360 |
| MS.gene26578.t1 | AT3G22460 | 64.074 | 270 | 77 | 1 | 95 | 364 | 1 | 250 | 1.01e-119 | 346 |
| MS.gene26578.t1 | AT3G61440 | 58.582 | 268 | 111 | 0 | 95 | 362 | 1 | 268 | 1.68e-110 | 324 |
| MS.gene26578.t1 | AT5G28030 | 62.753 | 247 | 92 | 0 | 43 | 289 | 3 | 249 | 9.27e-105 | 309 |
| MS.gene26578.t1 | AT3G61440 | 52.443 | 307 | 134 | 4 | 14 | 310 | 8 | 312 | 7.59e-103 | 306 |
| MS.gene26578.t1 | AT3G61440 | 57.851 | 242 | 102 | 0 | 121 | 362 | 2 | 243 | 1.74e-97 | 290 |
| MS.gene26578.t1 | AT3G22460 | 70.166 | 181 | 54 | 0 | 47 | 227 | 8 | 188 | 1.47e-93 | 278 |
| MS.gene26578.t1 | AT5G28020 | 60.256 | 234 | 93 | 0 | 127 | 360 | 1 | 234 | 5.14e-91 | 273 |
| MS.gene26578.t1 | AT1G55880 | 27.717 | 368 | 206 | 6 | 37 | 346 | 30 | 395 | 1.87e-40 | 147 |
| MS.gene26578.t1 | AT1G55880 | 27.187 | 320 | 174 | 5 | 37 | 298 | 30 | 348 | 7.81e-35 | 131 |
Find 87 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAACCGGTGGAACTCTTTC+TGG | 0.174287 | 4.1:+22708278 | MS.gene26578:CDS |
| TGCTGCTACAGCTGCATTGC+AGG | 0.226091 | 4.1:+22709021 | MS.gene26578:CDS |
| CACTAACCAGCAAGCCTTCC+TGG | 0.248330 | 4.1:-22708792 | None:intergenic |
| CACATTCTTCTCGAGCTTCC+TGG | 0.248992 | 4.1:-22709380 | None:intergenic |
| CTCGAAAGCAACATACTTTC+AGG | 0.252788 | 4.1:+22708437 | MS.gene26578:CDS |
| TGCTGCAAAGCTTGAGCTTA+TGG | 0.262645 | 4.1:+22707068 | MS.gene26578:CDS |
| GATTTCTTTATCCAAATTCT+TGG | 0.286384 | 4.1:-22708604 | None:intergenic |
| CACACATAATTCAGGGTATT+GGG | 0.300262 | 4.1:+22708568 | MS.gene26578:CDS |
| GTATGCACTTCAGAGTATTT+TGG | 0.302707 | 4.1:+22707926 | MS.gene26578:intron |
| CACAGGACCACACATAATTC+AGG | 0.307785 | 4.1:+22708560 | MS.gene26578:intron |
| AGAGTTCTTATGAAAGCATT+TGG | 0.314655 | 4.1:+22708053 | MS.gene26578:CDS |
| GAGATCATCGTTGCTGGTTT+GGG | 0.333139 | 4.1:-22706865 | None:intergenic |
| ACCTTTAGTAGCTGCTATAA+AGG | 0.342177 | 4.1:-22707985 | None:intergenic |
| CTTTCTAAACTCATTGAAAC+AGG | 0.346381 | 4.1:-22708029 | None:intergenic |
| TTTGTATCTTTCCATATCTC+TGG | 0.353997 | 4.1:-22708224 | None:intergenic |
| TGAGATCATCGTTGCTGGTT+TGG | 0.382543 | 4.1:-22706866 | None:intergenic |
| AGAATACTGGGCCAGAGATA+TGG | 0.384193 | 4.1:+22708213 | MS.gene26578:CDS |
| ACCGGTGGGAACACAGGAAT+TGG | 0.391141 | 4.1:+22707957 | MS.gene26578:CDS |
| AGCCCTTAGTGATACTCTTC+AGG | 0.405705 | 4.1:-22707032 | None:intergenic |
| ACTCATAGCCTTGGAATATT+CGG | 0.408095 | 4.1:-22708093 | None:intergenic |
| AGCACTCCAGGAAGGCTTGC+TGG | 0.419636 | 4.1:+22708786 | MS.gene26578:CDS |
| GTATTCTCATAATGCACCTT+AGG | 0.423127 | 4.1:-22708197 | None:intergenic |
| AATATTGAGATCATCGTTGC+TGG | 0.427113 | 4.1:-22706871 | None:intergenic |
| ATTTCTTTATCCAAATTCTT+GGG | 0.427230 | 4.1:-22708603 | None:intergenic |
| TAATGCACCTTAGGATTTGA+AGG | 0.427650 | 4.1:-22708188 | None:intergenic |
| CATATCTTTCACCGAAGCTT+GGG | 0.435988 | 4.1:-22709341 | None:intergenic |
| GTTTGGGATTCGACAAAGGC+AGG | 0.443433 | 4.1:-22706849 | None:intergenic |
| TTAGTCTCGGCAATTGGAAC+CGG | 0.448696 | 4.1:+22708263 | MS.gene26578:CDS |
| TCCGACCTCTGTAATATCAT+TGG | 0.450501 | 4.1:-22706895 | None:intergenic |
| TGTTGAAGCATGTATGCATT+AGG | 0.450753 | 4.1:-22708155 | None:intergenic |
| AGCTGAAACGGTGGCTGGTA+CGG | 0.450973 | 4.1:-22706803 | None:intergenic |
| AACTGCTCCACTCATAGCCT+TGG | 0.451930 | 4.1:-22708102 | None:intergenic |
| CAGGTTGTATTCCCAAGCTT+CGG | 0.453220 | 4.1:+22709330 | MS.gene26578:intron |
| GCCTTTATAGCAGCTACTAA+AGG | 0.455275 | 4.1:+22707984 | MS.gene26578:CDS |
| ACATATCTTTCACCGAAGCT+TGG | 0.458571 | 4.1:-22709342 | None:intergenic |
| CCACACATAATTCAGGGTAT+TGG | 0.460806 | 4.1:+22708567 | MS.gene26578:CDS |
| GTAAAATTGTTTCATGGCTC+CGG | 0.463120 | 4.1:-22709414 | None:intergenic |
| AAACAGGTGGGAATTTCCTC+AGG | 0.469541 | 4.1:+22708995 | MS.gene26578:intron |
| TGCTTACATGCACAGCTCAT+AGG | 0.475577 | 4.1:+22706991 | MS.gene26578:intron |
| AAGGTGCATTATGAGAATAC+TGG | 0.479612 | 4.1:+22708200 | MS.gene26578:CDS |
| TGATAATCCTTCAAATCCTA+AGG | 0.485123 | 4.1:+22708181 | MS.gene26578:CDS |
| TGCAAGGCAAATAGCACTCC+AGG | 0.497957 | 4.1:+22708774 | MS.gene26578:CDS |
| AGAATGTGAGAAAATGCAAC+CGG | 0.512076 | 4.1:+22709395 | MS.gene26578:CDS |
| AGATCCTGGTTGAGCTGAAA+CGG | 0.512803 | 4.1:-22706815 | None:intergenic |
| TTGGGATTCGACAAAGGCAG+GGG | 0.517966 | 4.1:-22706847 | None:intergenic |
| CAGAAAGGACTCATAACACC+TGG | 0.522023 | 4.1:+22707791 | MS.gene26578:CDS |
| ATAATTCAGGGTATTGGGGC+TGG | 0.523924 | 4.1:+22708573 | MS.gene26578:CDS |
| TGCTAAGAGACCTGAAAATG+AGG | 0.527044 | 4.1:+22709045 | MS.gene26578:CDS |
| GTCTCGGCAATTGGAACCGG+TGG | 0.532547 | 4.1:+22708266 | MS.gene26578:CDS |
| GAGATATGGAAAGATACAAA+AGG | 0.534527 | 4.1:+22708227 | MS.gene26578:CDS |
| GGTGGAACTCTTTCTGGAGC+TGG | 0.534617 | 4.1:+22708284 | MS.gene26578:CDS |
| CATGTTGCAGTGTCAAAGAC+AGG | 0.537458 | 4.1:+22707094 | MS.gene26578:CDS |
| TGTTATGAGTCCTTTCTGCT+CGG | 0.547510 | 4.1:-22707786 | None:intergenic |
| AGGGGAAGATGAAAAGATCC+TGG | 0.553418 | 4.1:-22706829 | None:intergenic |
| ACAAGTAAAAGACTTGACTA+AGG | 0.556177 | 4.1:-22706766 | None:intergenic |
| AGCTCCAGAAAGAGTTCCAC+CGG | 0.558578 | 4.1:-22708282 | None:intergenic |
| AGGTGCATTATGAGAATACT+GGG | 0.564800 | 4.1:+22708201 | MS.gene26578:CDS |
| ACAGGACCACACATAATTCA+GGG | 0.566612 | 4.1:+22708561 | MS.gene26578:intron |
| ACCAATTCCTGTGTTCCCAC+CGG | 0.567362 | 4.1:-22707958 | None:intergenic |
| TTACCTGAAGAGTATCACTA+AGG | 0.569604 | 4.1:+22707029 | MS.gene26578:CDS |
| GGTTGAGCTGAAACGGTGGC+TGG | 0.574406 | 4.1:-22706808 | None:intergenic |
| ATTCTTGATGCCGAGCAGAA+AGG | 0.581925 | 4.1:+22707776 | MS.gene26578:CDS |
| TTTGGGATTCGACAAAGGCA+GGG | 0.588345 | 4.1:-22706848 | None:intergenic |
| GAACCTACCGGTGGGAACAC+AGG | 0.590747 | 4.1:+22707951 | MS.gene26578:CDS |
| CTACGTATCAATCAGTGCAT+CGG | 0.594890 | 4.1:+22708404 | MS.gene26578:intron |
| ATACTCTTCAGGTAAACCAT+TGG | 0.603385 | 4.1:-22707021 | None:intergenic |
| AGGACTCATAACACCTGGGA+AGG | 0.604876 | 4.1:+22707796 | MS.gene26578:CDS |
| GAAAGTATGTTGCTTTCGAG+AGG | 0.608190 | 4.1:-22708434 | None:intergenic |
| ACACATAATTCAGGGTATTG+GGG | 0.608497 | 4.1:+22708569 | MS.gene26578:CDS |
| CTGTCTTTGACACTGCAACA+TGG | 0.615946 | 4.1:-22707093 | None:intergenic |
| TCCTGGTTGAGCTGAAACGG+TGG | 0.618636 | 4.1:-22706812 | None:intergenic |
| GCTAAGAGACCTGAAAATGA+GGG | 0.619429 | 4.1:+22709046 | MS.gene26578:CDS |
| TACCTGAAGAGTATCACTAA+GGG | 0.627372 | 4.1:+22707030 | MS.gene26578:CDS |
| GAATATTCCAAGGCTATGAG+TGG | 0.632482 | 4.1:+22708095 | MS.gene26578:CDS |
| GCTGGTTTGGGATTCGACAA+AGG | 0.632618 | 4.1:-22706853 | None:intergenic |
| AGACCGCTATAACTTCATCA+AGG | 0.636275 | 4.1:-22708626 | None:intergenic |
| GCCACCGTTTCAGCTCAACC+AGG | 0.639745 | 4.1:+22706811 | MS.gene26578:CDS |
| AAGAATCTGTCAAAACTGCA+AGG | 0.645155 | 4.1:+22708758 | MS.gene26578:CDS |
| ATTCCTGTGTTCCCACCGGT+AGG | 0.651234 | 4.1:-22707954 | None:intergenic |
| GAAAGCAACATACTTTCAGG+TGG | 0.653711 | 4.1:+22708440 | MS.gene26578:CDS |
| AAATGAGGGAAAGCTTATTG+TGG | 0.653863 | 4.1:+22709060 | MS.gene26578:CDS |
| AGCTGTAGCAGCACAACCTG+AGG | 0.655976 | 4.1:-22709011 | None:intergenic |
| AATCCTTGATGAAGTTATAG+CGG | 0.663239 | 4.1:+22708623 | MS.gene26578:CDS |
| AGGCAAATAGCACTCCAGGA+AGG | 0.669487 | 4.1:+22708778 | MS.gene26578:CDS |
| CCAATACCCTGAATTATGTG+TGG | 0.679263 | 4.1:-22708567 | None:intergenic |
| AGAAAGGACTCATAACACCT+GGG | 0.699620 | 4.1:+22707792 | MS.gene26578:CDS |
| TATTGCCAATGATATTACAG+AGG | 0.723357 | 4.1:+22706890 | MS.gene26578:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTATGCTTTAATATA+TGG | - | chr4.1:22708897-22708916 | None:intergenic | 10.0% |
| !! | CTATTATTAGTATAAAAATA+TGG | - | chr4.1:22707415-22707434 | None:intergenic | 10.0% |
| !! | TAAAAAAAATTACTTATGTA+AGG | + | chr4.1:22709100-22709119 | MS.gene26578:intron | 10.0% |
| !!! | ATAAGTAATTTTTTTTAATG+CGG | - | chr4.1:22709097-22709116 | None:intergenic | 10.0% |
| !! | AACTTATTATATTTCTTACT+TGG | - | chr4.1:22708470-22708489 | None:intergenic | 15.0% |
| !! | ATAATAGTAGTAGATAATTT+CGG | + | chr4.1:22707428-22707447 | MS.gene26578:intron | 15.0% |
| !! | ATTAAAGCATAATTAATGAA+GGG | + | chr4.1:22708900-22708919 | MS.gene26578:intron | 15.0% |
| !! | CAATAAATAAAAAAATTGTG+AGG | - | chr4.1:22709310-22709329 | None:intergenic | 15.0% |
| !! | TAGAATATAAACCTTAAATT+TGG | + | chr4.1:22707326-22707345 | MS.gene26578:intron | 15.0% |
| !! | TATTAAAGCATAATTAATGA+AGG | + | chr4.1:22708899-22708918 | MS.gene26578:intron | 15.0% |
| !!! | AATTTAAGGTTTATATTCTA+AGG | - | chr4.1:22707326-22707345 | None:intergenic | 15.0% |
| !!! | ACAATTTTTTTATTTATTGC+AGG | + | chr4.1:22709311-22709330 | MS.gene26578:intron | 15.0% |
| !!! | TTCTTTCTTTTTAAACATTT+TGG | + | chr4.1:22707150-22707169 | MS.gene26578:intron | 15.0% |
| !! | ACAACAAAATCCAAAAATAA+AGG | + | chr4.1:22708319-22708338 | MS.gene26578:CDS | 20.0% |
| !! | ATATCAGCTAATTAATTGTA+AGG | - | chr4.1:22707551-22707570 | None:intergenic | 20.0% |
| !! | ATTTCTTTATCCAAATTCTT+GGG | - | chr4.1:22708606-22708625 | None:intergenic | 20.0% |
| !! | GTAGAGAATAAAATGTTAAA+TGG | - | chr4.1:22708388-22708407 | None:intergenic | 20.0% |
| !! | TTTGTTTCATTTCTATTTGT+TGG | + | chr4.1:22707196-22707215 | MS.gene26578:intron | 20.0% |
| !!! | GAATGATTTACCTTTATTTT+TGG | - | chr4.1:22708332-22708351 | None:intergenic | 20.0% |
| !!! | TTATTTTATTGTTTCTGCTT+TGG | + | chr4.1:22707727-22707746 | MS.gene26578:intron | 20.0% |
| !!! | TTTTTGGATTTTGTTGTTTT+AGG | - | chr4.1:22708316-22708335 | None:intergenic | 20.0% |
| ! | ATAACAGAATATGATCAGAT+TGG | - | chr4.1:22709192-22709211 | None:intergenic | 25.0% |
| ! | ATCAGATAAAAGCTCTTTAA+AGG | - | chr4.1:22708522-22708541 | None:intergenic | 25.0% |
| ! | ATTTCGGCTAAATAATTGTA+AGG | + | chr4.1:22707444-22707463 | MS.gene26578:intron | 25.0% |
| ! | CACTTATATGCAAATTTATG+TGG | - | chr4.1:22707685-22707704 | None:intergenic | 25.0% |
| ! | GATTAATCAGAATAATGCAT+TGG | - | chr4.1:22708685-22708704 | None:intergenic | 25.0% |
| ! | GATTGTTAATTACTTGTTTC+TGG | + | chr4.1:22707904-22707923 | MS.gene26578:intron | 25.0% |
| ! | GATTTCTTTATCCAAATTCT+TGG | - | chr4.1:22708607-22708626 | None:intergenic | 25.0% |
| ! | TGGTATCAATGATGTTATAT+CGG | + | chr4.1:22707482-22707501 | MS.gene26578:intron | 25.0% |
| ! | TTGTAAGGAATAAATGTTGT+TGG | + | chr4.1:22707459-22707478 | MS.gene26578:intron | 25.0% |
| ! | TTTACCTAAATTCTTACCAT+TGG | + | chr4.1:22708971-22708990 | MS.gene26578:intron | 25.0% |
| ! | TTTGTATCTTGATTAACTGT+TGG | + | chr4.1:22708933-22708952 | MS.gene26578:intron | 25.0% |
| !! | TTTTCCAATGGTAAGAATTT+AGG | - | chr4.1:22708978-22708997 | None:intergenic | 25.0% |
| !!! | TCTTTTTTATATACCATCCA+AGG | - | chr4.1:22709141-22709160 | None:intergenic | 25.0% |
| AATCCTTGATGAAGTTATAG+CGG | + | chr4.1:22708623-22708642 | MS.gene26578:CDS | 30.0% | |
| AATTCTTACCATTGGAAAAC+AGG | + | chr4.1:22708979-22708998 | MS.gene26578:intron | 30.0% | |
| ACAAGTAAAAGACTTGACTA+AGG | - | chr4.1:22706769-22706788 | None:intergenic | 30.0% | |
| AGGAAATAACATATCAGACT+TGG | - | chr4.1:22708502-22708521 | None:intergenic | 30.0% | |
| CTTTCTAAACTCATTGAAAC+AGG | - | chr4.1:22708032-22708051 | None:intergenic | 30.0% | |
| GAGATATGGAAAGATACAAA+AGG | + | chr4.1:22708227-22708246 | MS.gene26578:CDS | 30.0% | |
| TAAATGGAAATCAACAAGCT+AGG | - | chr4.1:22708372-22708391 | None:intergenic | 30.0% | |
| TAAGGAATAAATGTTGTTGG+TGG | + | chr4.1:22707462-22707481 | MS.gene26578:intron | 30.0% | |
| TATTGCCAATGATATTACAG+AGG | + | chr4.1:22706890-22706909 | MS.gene26578:CDS | 30.0% | |
| TGATAATCCTTCAAATCCTA+AGG | + | chr4.1:22708181-22708200 | MS.gene26578:CDS | 30.0% | |
| TTTAATTAATCCACCTTGGA+TGG | + | chr4.1:22709125-22709144 | MS.gene26578:intron | 30.0% | |
| TTTGTATCTTTCCATATCTC+TGG | - | chr4.1:22708227-22708246 | None:intergenic | 30.0% | |
| ! | TAGTCAATGGGTGATATTTT+TGG | + | chr4.1:22707226-22707245 | MS.gene26578:intron | 30.0% |
| ! | TTTTTATATACCATCCAAGG+TGG | - | chr4.1:22709138-22709157 | None:intergenic | 30.0% |
| !! | AGAGTTCTTATGAAAGCATT+TGG | + | chr4.1:22708053-22708072 | MS.gene26578:CDS | 30.0% |
| !! | CAAAGTAGACATTTTAGTCT+CGG | + | chr4.1:22708250-22708269 | MS.gene26578:CDS | 30.0% |
| !!! | ATTTTTTCCTGCTAAATCAC+AGG | + | chr4.1:22708543-22708562 | MS.gene26578:intron | 30.0% |
| AAATGAGGGAAAGCTTATTG+TGG | + | chr4.1:22709060-22709079 | MS.gene26578:CDS | 35.0% | |
| AAGAATCTGTCAAAACTGCA+AGG | + | chr4.1:22708758-22708777 | MS.gene26578:CDS | 35.0% | |
| AAGGTGCATTATGAGAATAC+TGG | + | chr4.1:22708200-22708219 | MS.gene26578:CDS | 35.0% | |
| AATATTGAGATCATCGTTGC+TGG | - | chr4.1:22706874-22706893 | None:intergenic | 35.0% | |
| ACCTTTAGTAGCTGCTATAA+AGG | - | chr4.1:22707988-22708007 | None:intergenic | 35.0% | |
| AGAATGTGAGAAAATGCAAC+CGG | + | chr4.1:22709395-22709414 | MS.gene26578:CDS | 35.0% | |
| AGGTGCATTATGAGAATACT+GGG | + | chr4.1:22708201-22708220 | MS.gene26578:CDS | 35.0% | |
| ATACTCTTCAGGTAAACCAT+TGG | - | chr4.1:22707024-22707043 | None:intergenic | 35.0% | |
| GATAAGACGGTCCAAATTTA+AGG | - | chr4.1:22707340-22707359 | None:intergenic | 35.0% | |
| GGAGTTTAATTAATCCACCT+TGG | + | chr4.1:22709121-22709140 | MS.gene26578:intron | 35.0% | |
| GTATTCTCATAATGCACCTT+AGG | - | chr4.1:22708200-22708219 | None:intergenic | 35.0% | |
| GTTGGTTAGTGTTAGTCAAT+GGG | + | chr4.1:22707214-22707233 | MS.gene26578:intron | 35.0% | |
| TAATGCACCTTAGGATTTGA+AGG | - | chr4.1:22708191-22708210 | None:intergenic | 35.0% | |
| TGTTGAAGCATGTATGCATT+AGG | - | chr4.1:22708158-22708177 | None:intergenic | 35.0% | |
| TTTCTTGCAATTGACAACAC+TGG | + | chr4.1:22707642-22707661 | MS.gene26578:intron | 35.0% | |
| ! | AATATGATCAGATTGGCTGA+AGG | - | chr4.1:22709185-22709204 | None:intergenic | 35.0% |
| ! | ACTCATAGCCTTGGAATATT+CGG | - | chr4.1:22708096-22708115 | None:intergenic | 35.0% |
| ! | ATAAGCTTTCCCTCATTTTC+AGG | - | chr4.1:22709058-22709077 | None:intergenic | 35.0% |
| ! | ATATGATCAGATTGGCTGAA+GGG | - | chr4.1:22709184-22709203 | None:intergenic | 35.0% |
| ! | CACACATAATTCAGGGTATT+GGG | + | chr4.1:22708568-22708587 | MS.gene26578:CDS | 35.0% |
| ! | TGTTGGTTAGTGTTAGTCAA+TGG | + | chr4.1:22707213-22707232 | MS.gene26578:intron | 35.0% |
| !! | ACACATAATTCAGGGTATTG+GGG | + | chr4.1:22708569-22708588 | MS.gene26578:CDS | 35.0% |
| !! | GTATGCACTTCAGAGTATTT+TGG | + | chr4.1:22707926-22707945 | MS.gene26578:intron | 35.0% |
| !! | TACCTGAAGAGTATCACTAA+GGG | + | chr4.1:22707030-22707049 | MS.gene26578:CDS | 35.0% |
| !! | TTACCTGAAGAGTATCACTA+AGG | + | chr4.1:22707029-22707048 | MS.gene26578:CDS | 35.0% |
| !!! | AGTATTTTGGTAGAACCTAC+CGG | + | chr4.1:22707939-22707958 | MS.gene26578:CDS | 35.0% |
| !!! | TGTTTTGACCGAATATTCCA+AGG | + | chr4.1:22708085-22708104 | MS.gene26578:CDS | 35.0% |
| ACAGGACCACACATAATTCA+GGG | + | chr4.1:22708561-22708580 | MS.gene26578:intron | 40.0% | |
| ACATATCTTTCACCGAAGCT+TGG | - | chr4.1:22709345-22709364 | None:intergenic | 40.0% | |
| ACCGTCTGGTTAAGATAAGA+CGG | - | chr4.1:22707353-22707372 | None:intergenic | 40.0% | |
| ACCGTCTTATCTTAACCAGA+CGG | + | chr4.1:22707349-22707368 | MS.gene26578:intron | 40.0% | |
| AGAAAGGACTCATAACACCT+GGG | + | chr4.1:22707792-22707811 | MS.gene26578:CDS | 40.0% | |
| AGACCGCTATAACTTCATCA+AGG | - | chr4.1:22708629-22708648 | None:intergenic | 40.0% | |
| ATGCTATAACCTATCCTGCA+AGG | - | chr4.1:22707755-22707774 | None:intergenic | 40.0% | |
| CATATCTTTCACCGAAGCTT+GGG | - | chr4.1:22709344-22709363 | None:intergenic | 40.0% | |
| CCAATACCCTGAATTATGTG+TGG | - | chr4.1:22708570-22708589 | None:intergenic | 40.0% | |
| CCACACATAATTCAGGGTAT+TGG | + | chr4.1:22708567-22708586 | MS.gene26578:CDS | 40.0% | |
| CTACGTATCAATCAGTGCAT+CGG | + | chr4.1:22708404-22708423 | MS.gene26578:intron | 40.0% | |
| CTCGAAAGCAACATACTTTC+AGG | + | chr4.1:22708437-22708456 | MS.gene26578:CDS | 40.0% | |
| CTTACCATTGGAAAACAGGT+GGG | + | chr4.1:22708983-22709002 | MS.gene26578:intron | 40.0% | |
| GAAAGCAACATACTTTCAGG+TGG | + | chr4.1:22708440-22708459 | MS.gene26578:CDS | 40.0% | |
| GAATATTCCAAGGCTATGAG+TGG | + | chr4.1:22708095-22708114 | MS.gene26578:CDS | 40.0% | |
| GCCAATGATATTACAGAGGT+CGG | + | chr4.1:22706894-22706913 | MS.gene26578:intron | 40.0% | |
| GCCTTTATAGCAGCTACTAA+AGG | + | chr4.1:22707984-22708003 | MS.gene26578:CDS | 40.0% | |
| GCTAAGAGACCTGAAAATGA+GGG | + | chr4.1:22709046-22709065 | MS.gene26578:CDS | 40.0% | |
| GCTATAGCGTTATAGCATAG+CGG | + | chr4.1:22707504-22707523 | MS.gene26578:intron | 40.0% | |
| TACGCTACAATGCTAAGCAA+TGG | - | chr4.1:22707578-22707597 | None:intergenic | 40.0% | |
| TCCGACCTCTGTAATATCAT+TGG | - | chr4.1:22706898-22706917 | None:intergenic | 40.0% | |
| TCTTACCATTGGAAAACAGG+TGG | + | chr4.1:22708982-22709001 | MS.gene26578:intron | 40.0% | |
| TGCTAAGAGACCTGAAAATG+AGG | + | chr4.1:22709045-22709064 | MS.gene26578:CDS | 40.0% | |
| TGTTATGAGTCCTTTCTGCT+CGG | - | chr4.1:22707789-22707808 | None:intergenic | 40.0% | |
| TTGCAATTGACAACACTGGT+TGG | + | chr4.1:22707646-22707665 | MS.gene26578:intron | 40.0% | |
| ! | AATTCCCACCTGTTTTCCAA+TGG | - | chr4.1:22708990-22709009 | None:intergenic | 40.0% |
| ! | CTTTCGTATTTTACCTTCCC+AGG | - | chr4.1:22707812-22707831 | None:intergenic | 40.0% |
| ! | CTTTTCTGATTGTCTGCATG+TGG | + | chr4.1:22708713-22708732 | MS.gene26578:intron | 40.0% |
| ! | TGGCAACTTTTGCAGATATC+CGG | + | chr4.1:22708733-22708752 | MS.gene26578:intron | 40.0% |
| ! | TGTGTCTACTTCTCTTTTCC+AGG | + | chr4.1:22709362-22709381 | MS.gene26578:CDS | 40.0% |
| !! | AGTTTTGACAGATTCTTCGC+CGG | - | chr4.1:22708755-22708774 | None:intergenic | 40.0% |
| !! | GAAAGTATGTTGCTTTCGAG+AGG | - | chr4.1:22708437-22708456 | None:intergenic | 40.0% |
| !! | GACATTTTAGTCTCGGCAAT+TGG | + | chr4.1:22708257-22708276 | MS.gene26578:CDS | 40.0% |
| !!! | TGGTTTTGTGCCCAAGAATT+TGG | + | chr4.1:22708593-22708612 | MS.gene26578:CDS | 40.0% |
| AAACAGGTGGGAATTTCCTC+AGG | + | chr4.1:22708995-22709014 | MS.gene26578:intron | 45.0% | |
| AGAATACTGGGCCAGAGATA+TGG | + | chr4.1:22708213-22708232 | MS.gene26578:CDS | 45.0% | |
| AGATCCTGGTTGAGCTGAAA+CGG | - | chr4.1:22706818-22706837 | None:intergenic | 45.0% | |
| AGCCCTTAGTGATACTCTTC+AGG | - | chr4.1:22707035-22707054 | None:intergenic | 45.0% | |
| AGGGGAAGATGAAAAGATCC+TGG | - | chr4.1:22706832-22706851 | None:intergenic | 45.0% | |
| ATTCTTGATGCCGAGCAGAA+AGG | + | chr4.1:22707776-22707795 | MS.gene26578:CDS | 45.0% | |
| CACAGGACCACACATAATTC+AGG | + | chr4.1:22708560-22708579 | MS.gene26578:intron | 45.0% | |
| CAGAAAGGACTCATAACACC+TGG | + | chr4.1:22707791-22707810 | MS.gene26578:CDS | 45.0% | |
| CAGGTTGTATTCCCAAGCTT+CGG | + | chr4.1:22709330-22709349 | MS.gene26578:intron | 45.0% | |
| CATGTTGCAGTGTCAAAGAC+AGG | + | chr4.1:22707094-22707113 | MS.gene26578:CDS | 45.0% | |
| CTGTCTTTGACACTGCAACA+TGG | - | chr4.1:22707096-22707115 | None:intergenic | 45.0% | |
| GCTCATAGGAAAAACGCCAA+TGG | + | chr4.1:22707005-22707024 | MS.gene26578:intron | 45.0% | |
| TATGCATGACTGCATGTCCT+CGG | - | chr4.1:22707255-22707274 | None:intergenic | 45.0% | |
| TGCTGCAAAGCTTGAGCTTA+TGG | + | chr4.1:22707068-22707087 | MS.gene26578:CDS | 45.0% | |
| TGCTTACATGCACAGCTCAT+AGG | + | chr4.1:22706991-22707010 | MS.gene26578:intron | 45.0% | |
| TTAGTCTCGGCAATTGGAAC+CGG | + | chr4.1:22708263-22708282 | MS.gene26578:CDS | 45.0% | |
| TTGCAGTGTCAAAGACAGGT+AGG | + | chr4.1:22707098-22707117 | MS.gene26578:intron | 45.0% | |
| ! | TGAGATCATCGTTGCTGGTT+TGG | - | chr4.1:22706869-22706888 | None:intergenic | 45.0% |
| ! | TTTCTGCTTTGGTTCCTTGC+AGG | + | chr4.1:22707738-22707757 | MS.gene26578:intron | 45.0% |
| ! | TTTGGGATTCGACAAAGGCA+GGG | - | chr4.1:22706851-22706870 | None:intergenic | 45.0% |
| ! | TTTTGGTAGAACCTACCGGT+GGG | + | chr4.1:22707943-22707962 | MS.gene26578:CDS | 45.0% |
| !! | ATAATTCAGGGTATTGGGGC+TGG | + | chr4.1:22708573-22708592 | MS.gene26578:CDS | 45.0% |
| !! | ATTTTGGTAGAACCTACCGG+TGG | + | chr4.1:22707942-22707961 | MS.gene26578:CDS | 45.0% |
| !! | GAGATCATCGTTGCTGGTTT+GGG | - | chr4.1:22706868-22706887 | None:intergenic | 45.0% |
| !!! | GGTGATATTTTTGGATCCCG+AGG | + | chr4.1:22707235-22707254 | MS.gene26578:intron | 45.0% |
| !! | TATTATTAGTATAAAAATAT+GGG | - | chr4.1:22707414-22707433 | None:intergenic | 5.0% |
| AACTGCTCCACTCATAGCCT+TGG | - | chr4.1:22708105-22708124 | None:intergenic | 50.0% | |
| ACCAATTCCTGTGTTCCCAC+CGG | - | chr4.1:22707961-22707980 | None:intergenic | 50.0% | |
| AGCTCCAGAAAGAGTTCCAC+CGG | - | chr4.1:22708285-22708304 | None:intergenic | 50.0% | |
| AGGACTCATAACACCTGGGA+AGG | + | chr4.1:22707796-22707815 | MS.gene26578:CDS | 50.0% | |
| AGGCAAATAGCACTCCAGGA+AGG | + | chr4.1:22708778-22708797 | MS.gene26578:CDS | 50.0% | |
| ATGCATGACTGCATGTCCTC+GGG | - | chr4.1:22707254-22707273 | None:intergenic | 50.0% | |
| CACATTCTTCTCGAGCTTCC+TGG | - | chr4.1:22709383-22709402 | None:intergenic | 50.0% | |
| GTGTGGTCCTGTGATTTAGC+AGG | - | chr4.1:22708553-22708572 | None:intergenic | 50.0% | |
| TGCAAGGCAAATAGCACTCC+AGG | + | chr4.1:22708774-22708793 | MS.gene26578:CDS | 50.0% | |
| TTGGGATTCGACAAAGGCAG+GGG | - | chr4.1:22706850-22706869 | None:intergenic | 50.0% | |
| ! | GCTTTGGTTCCTTGCAGGAT+AGG | + | chr4.1:22707743-22707762 | MS.gene26578:intron | 50.0% |
| ! | GTTTGGGATTCGACAAAGGC+AGG | - | chr4.1:22706852-22706871 | None:intergenic | 50.0% |
| !! | GCTGGTTTGGGATTCGACAA+AGG | - | chr4.1:22706856-22706875 | None:intergenic | 50.0% |
| ACCGGTGGGAACACAGGAAT+TGG | + | chr4.1:22707957-22707976 | MS.gene26578:CDS | 55.0% | |
| AGCTGAAACGGTGGCTGGTA+CGG | - | chr4.1:22706806-22706825 | None:intergenic | 55.0% | |
| AGCTGTAGCAGCACAACCTG+AGG | - | chr4.1:22709014-22709033 | None:intergenic | 55.0% | |
| ATGCATGCAGTCCTGCCTTC+TGG | - | chr4.1:22707385-22707404 | None:intergenic | 55.0% | |
| ATTCCTGTGTTCCCACCGGT+AGG | - | chr4.1:22707957-22707976 | None:intergenic | 55.0% | |
| CACTAACCAGCAAGCCTTCC+TGG | - | chr4.1:22708795-22708814 | None:intergenic | 55.0% | |
| GACGGTGAGATCTGTCCAGA+AGG | + | chr4.1:22707367-22707386 | MS.gene26578:intron | 55.0% | |
| GGAACCGGTGGAACTCTTTC+TGG | + | chr4.1:22708278-22708297 | MS.gene26578:CDS | 55.0% | |
| GTGAGATCTGTCCAGAAGGC+AGG | + | chr4.1:22707371-22707390 | MS.gene26578:intron | 55.0% | |
| TCCTGGTTGAGCTGAAACGG+TGG | - | chr4.1:22706815-22706834 | None:intergenic | 55.0% | |
| TCTGGACAGATCTCACCGTC+TGG | - | chr4.1:22707367-22707386 | None:intergenic | 55.0% | |
| TGCTGCTACAGCTGCATTGC+AGG | + | chr4.1:22709021-22709040 | MS.gene26578:CDS | 55.0% | |
| !! | GGTGGAACTCTTTCTGGAGC+TGG | + | chr4.1:22708284-22708303 | MS.gene26578:CDS | 55.0% |
| AGCACTCCAGGAAGGCTTGC+TGG | + | chr4.1:22708786-22708805 | MS.gene26578:CDS | 60.0% | |
| GAACCTACCGGTGGGAACAC+AGG | + | chr4.1:22707951-22707970 | MS.gene26578:CDS | 60.0% | |
| GCCACCGTTTCAGCTCAACC+AGG | + | chr4.1:22706811-22706830 | MS.gene26578:CDS | 60.0% | |
| GGTTGAGCTGAAACGGTGGC+TGG | - | chr4.1:22706811-22706830 | None:intergenic | 60.0% | |
| GTCTCGGCAATTGGAACCGG+TGG | + | chr4.1:22708266-22708285 | MS.gene26578:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 22706753 | 22709425 | 22706753 | ID=MS.gene26578 |
| chr4.1 | mRNA | 22706753 | 22709425 | 22706753 | ID=MS.gene26578.t1;Parent=MS.gene26578 |
| chr4.1 | exon | 22706753 | 22706911 | 22706753 | ID=MS.gene26578.t1.exon1;Parent=MS.gene26578.t1 |
| chr4.1 | CDS | 22706753 | 22706911 | 22706753 | ID=cds.MS.gene26578.t1;Parent=MS.gene26578.t1 |
| chr4.1 | exon | 22707006 | 22707115 | 22707006 | ID=MS.gene26578.t1.exon2;Parent=MS.gene26578.t1 |
| chr4.1 | CDS | 22707006 | 22707115 | 22707006 | ID=cds.MS.gene26578.t1;Parent=MS.gene26578.t1 |
| chr4.1 | exon | 22707760 | 22707817 | 22707760 | ID=MS.gene26578.t1.exon3;Parent=MS.gene26578.t1 |
| chr4.1 | CDS | 22707760 | 22707817 | 22707760 | ID=cds.MS.gene26578.t1;Parent=MS.gene26578.t1 |
| chr4.1 | exon | 22707939 | 22708340 | 22707939 | ID=MS.gene26578.t1.exon4;Parent=MS.gene26578.t1 |
| chr4.1 | CDS | 22707939 | 22708340 | 22707939 | ID=cds.MS.gene26578.t1;Parent=MS.gene26578.t1 |
| chr4.1 | exon | 22708419 | 22708470 | 22708419 | ID=MS.gene26578.t1.exon5;Parent=MS.gene26578.t1 |
| chr4.1 | CDS | 22708419 | 22708470 | 22708419 | ID=cds.MS.gene26578.t1;Parent=MS.gene26578.t1 |
| chr4.1 | exon | 22708565 | 22708644 | 22708565 | ID=MS.gene26578.t1.exon6;Parent=MS.gene26578.t1 |
| chr4.1 | CDS | 22708565 | 22708644 | 22708565 | ID=cds.MS.gene26578.t1;Parent=MS.gene26578.t1 |
| chr4.1 | exon | 22708748 | 22708807 | 22708748 | ID=MS.gene26578.t1.exon7;Parent=MS.gene26578.t1 |
| chr4.1 | CDS | 22708748 | 22708807 | 22708748 | ID=cds.MS.gene26578.t1;Parent=MS.gene26578.t1 |
| chr4.1 | exon | 22709001 | 22709081 | 22709001 | ID=MS.gene26578.t1.exon8;Parent=MS.gene26578.t1 |
| chr4.1 | CDS | 22709001 | 22709081 | 22709001 | ID=cds.MS.gene26578.t1;Parent=MS.gene26578.t1 |
| chr4.1 | exon | 22709333 | 22709425 | 22709333 | ID=MS.gene26578.t1.exon9;Parent=MS.gene26578.t1 |
| chr4.1 | CDS | 22709333 | 22709425 | 22709333 | ID=cds.MS.gene26578.t1;Parent=MS.gene26578.t1 |
| Gene Sequence |
| Protein sequence |
