Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26620.t1 | XP_003609944.1 | 91.7 | 241 | 14 | 1 | 1 | 241 | 1 | 235 | 1.80E-116 | 428.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26620.t1 | Q94HF1 | 79.5 | 219 | 44 | 1 | 23 | 241 | 9 | 226 | 4.6e-97 | 355.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26620.t1 | G7JS43 | 91.7 | 241 | 14 | 1 | 1 | 241 | 1 | 235 | 1.3e-116 | 428.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene26620 | 0.800578 | 1.35E-48 | -1.69E-46 |
| MS.gene050638 | MS.gene26620 | -0.800326 | 1.52E-48 | -1.69E-46 |
| MS.gene053224 | MS.gene26620 | 0.811183 | 7.95E-51 | -1.69E-46 |
| MS.gene057643 | MS.gene26620 | 0.80868 | 2.75E-50 | -1.69E-46 |
| MS.gene060483 | MS.gene26620 | 0.803921 | 2.77E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26620 | MS.gene64519 | PPI |
| MS.gene26620 | MS.gene93599 | PPI |
| MS.gene26620 | MS.gene43132 | PPI |
| MS.gene09852 | MS.gene26620 | PPI |
| MS.gene26620 | MS.gene93613 | PPI |
| MS.gene26620 | MS.gene018560 | PPI |
| MS.gene26620 | MS.gene56143 | PPI |
| MS.gene26620 | MS.gene061898 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26620.t1 | MTR_4g124640 | 94.606 | 241 | 7 | 1 | 1 | 241 | 1 | 235 | 2.96e-169 | 466 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26620.t1 | AT4G33250 | 77.477 | 222 | 45 | 2 | 19 | 240 | 9 | 225 | 4.48e-128 | 362 |
Find 54 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATCATTAAATTCATTTC+TGG | 0.142858 | 8.4:-10639133 | None:intergenic |
| CTGGAAGGTTTCGTCAGTTC+TGG | 0.234923 | 8.4:+10637922 | MS.gene26620:CDS |
| TCGAGATCTGGAAGAATATC+TGG | 0.270145 | 8.4:-10636395 | None:intergenic |
| TGTTCTGTCTCACTATTTAG+AGG | 0.302059 | 8.4:+10637827 | MS.gene26620:CDS |
| ACCTCAGCAAGCACAGTTCT+AGG | 0.306787 | 8.4:-10638580 | None:intergenic |
| GCACAGTTCTAGGAATCTTT+TGG | 0.326432 | 8.4:-10638570 | None:intergenic |
| GGATCATTAAATTCATTTCT+GGG | 0.389991 | 8.4:-10639132 | None:intergenic |
| CGTTGCTCGCATATTGGTTA+AGG | 0.392388 | 8.4:+10636702 | MS.gene26620:CDS |
| GAATAGGCTATCAATGTAGA+AGG | 0.397813 | 8.4:+10639018 | MS.gene26620:intron |
| AGTTGGCTACTTGGTGTTCA+AGG | 0.416300 | 8.4:-10639059 | None:intergenic |
| CGATGAGTTGACCCGTCCCC+TGG | 0.429270 | 8.4:-10639104 | None:intergenic |
| CCCAACCAGAGTTGGCTACT+TGG | 0.435040 | 8.4:-10639068 | None:intergenic |
| AAGAATCATACCACACGTTC+CGG | 0.439440 | 8.4:-10637448 | None:intergenic |
| TGGAAGGTTTCGTCAGTTCT+GGG | 0.441956 | 8.4:+10637923 | MS.gene26620:CDS |
| ATAGAAAATCAGCTAAGAAT+AGG | 0.455595 | 8.4:-10639213 | None:intergenic |
| CGAAAATTATGTCAATGATC+AGG | 0.458244 | 8.4:+10636415 | MS.gene26620:CDS |
| AAGAGACATAGGCTGAAGTC+TGG | 0.460902 | 8.4:-10637418 | None:intergenic |
| TCCTTGCTGTTGTACTTGTA+CGG | 0.463786 | 8.4:-10636312 | None:intergenic |
| ACAACAGCAAGGACAAGGAC+AGG | 0.464338 | 8.4:+10636322 | MS.gene26620:CDS |
| CTCAATAACCCAACCAGAGT+TGG | 0.468021 | 8.4:-10639076 | None:intergenic |
| AATTATTGCAGGATTTGAGC+AGG | 0.473491 | 8.4:+10638507 | MS.gene26620:intron |
| CTTCTCTTCTTCAGACTGGA+AGG | 0.475180 | 8.4:+10637907 | MS.gene26620:intron |
| CATATAGTTGAAGCTGTGCC+AGG | 0.477852 | 8.4:+10637966 | MS.gene26620:CDS |
| CTGCCTTCTTCGCCTCTACC+AGG | 0.481697 | 8.4:+10636544 | MS.gene26620:CDS |
| TCAGATCGTTGCTCGCATAT+TGG | 0.484728 | 8.4:+10636696 | MS.gene26620:CDS |
| CAATGTAGAAGGTTTATCCT+TGG | 0.488911 | 8.4:+10639029 | MS.gene26620:CDS |
| CACTGCAGATAGTGTACCAT+TGG | 0.497181 | 8.4:+10639170 | MS.gene26620:CDS |
| CATTAAATTCATTTCTGGGA+AGG | 0.506668 | 8.4:-10639128 | None:intergenic |
| GAACATGAATCGCATAGCCT+TGG | 0.508528 | 8.4:-10638534 | None:intergenic |
| TATTGAGAAAAGCCAGGGGA+CGG | 0.514612 | 8.4:+10639092 | MS.gene26620:CDS |
| CCAAGTAGCCAACTCTGGTT+GGG | 0.517284 | 8.4:+10639068 | MS.gene26620:CDS |
| TTGGGTTATTGAGAAAAGCC+AGG | 0.525809 | 8.4:+10639086 | MS.gene26620:CDS |
| GAAGGCAGAGATTTGATTCG+AGG | 0.526051 | 8.4:-10636529 | None:intergenic |
| ACCAAGTAGCCAACTCTGGT+TGG | 0.542756 | 8.4:+10639067 | MS.gene26620:CDS |
| ATTGAGAAAAGCCAGGGGAC+GGG | 0.563107 | 8.4:+10639093 | MS.gene26620:CDS |
| GGATTTGAGCAGGCAATCCA+AGG | 0.567214 | 8.4:+10638517 | MS.gene26620:intron |
| TACCATTGGAGCACATTAGA+CGG | 0.570341 | 8.4:+10639184 | MS.gene26620:CDS |
| TGGAGCTGGCATAGCCATGA+GGG | 0.570416 | 8.4:-10637398 | None:intergenic |
| ATACCTGGTAGAGGCGAAGA+AGG | 0.571105 | 8.4:-10636547 | None:intergenic |
| GTGTTCAAGGAATTTGTCCA+AGG | 0.573518 | 8.4:-10639046 | None:intergenic |
| CATAGGCTGAAGTCTGGAGC+TGG | 0.575628 | 8.4:-10637412 | None:intergenic |
| GAACACCAAGTAGCCAACTC+TGG | 0.578457 | 8.4:+10639063 | MS.gene26620:CDS |
| AGAAAATGGATACCTGGTAG+AGG | 0.583966 | 8.4:-10636556 | None:intergenic |
| TGGGTTATTGAGAAAAGCCA+GGG | 0.586311 | 8.4:+10639087 | MS.gene26620:CDS |
| ATCCGTCTAATGTGCTCCAA+TGG | 0.587256 | 8.4:-10639186 | None:intergenic |
| GAGCTGTTCGACAGTGTAAG+CGG | 0.592715 | 8.4:-10636351 | None:intergenic |
| TCCTAGAACTGTGCTTGCTG+AGG | 0.608721 | 8.4:+10638579 | MS.gene26620:CDS |
| CAACAGCAAGGACAAGGACA+GGG | 0.614854 | 8.4:+10636323 | MS.gene26620:CDS |
| CAAGTACAACAGCAAGGACA+AGG | 0.618746 | 8.4:+10636317 | MS.gene26620:CDS |
| CTGTGAATATTAGCAAATGG+AGG | 0.623742 | 8.4:+10637785 | MS.gene26620:intron |
| CTGGAGCTGGCATAGCCATG+AGG | 0.661849 | 8.4:-10637399 | None:intergenic |
| CAGCAAGGACAAGGACAGGG+AGG | 0.673719 | 8.4:+10636326 | MS.gene26620:CDS |
| GCCGTACAAGTACAACAGCA+AGG | 0.674180 | 8.4:+10636311 | MS.gene26620:CDS |
| GGGTTATTGAGAAAAGCCAG+GGG | 0.740421 | 8.4:+10639088 | MS.gene26620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATTTTAAAATGATTAAT+AGG | + | chr8.4:10636612-10636631 | MS.gene26620:intron | 10.0% |
| !! | AACAAAAATTAATGAACAAA+AGG | - | chr8.4:10637763-10637782 | None:intergenic | 15.0% |
| !! | ACAAAAATTAATGAACAAAA+GGG | - | chr8.4:10637762-10637781 | None:intergenic | 15.0% |
| !! | CAAGTTTAACAAAAAATAAA+TGG | - | chr8.4:10638999-10639018 | None:intergenic | 15.0% |
| !!! | ATTATTTTATCTACTAATAG+TGG | - | chr8.4:10637081-10637100 | None:intergenic | 15.0% |
| !!! | ATTTGGTTTTGTTTTTTAAT+AGG | + | chr8.4:10637375-10637394 | MS.gene26620:intron | 15.0% |
| !!! | ATTTTTTGTTAAACTTGAAT+AGG | + | chr8.4:10639002-10639021 | MS.gene26620:intron | 15.0% |
| !!! | TAAATGATTCTTGAAAATTT+TGG | + | chr8.4:10638790-10638809 | MS.gene26620:intron | 15.0% |
| !!! | TTTTTTTGAACAAGAAATTT+TGG | + | chr8.4:10638831-10638850 | MS.gene26620:intron | 15.0% |
| !! | AATGACGATTAATAAGAAAA+TGG | - | chr8.4:10636573-10636592 | None:intergenic | 20.0% |
| !! | ATTTAAATGGACAAAACAAA+AGG | - | chr8.4:10638609-10638628 | None:intergenic | 20.0% |
| !! | TACTATTACAATTGACTATT+AGG | - | chr8.4:10637580-10637599 | None:intergenic | 20.0% |
| !! | TTATGAAAATAAGCTGAAAA+CGG | - | chr8.4:10637168-10637187 | None:intergenic | 20.0% |
| !!! | GTAATAGTATGAATTTTACT+TGG | + | chr8.4:10637591-10637610 | MS.gene26620:intron | 20.0% |
| !!! | TTACTTTAGAAAATTATTGC+AGG | + | chr8.4:10638496-10638515 | MS.gene26620:intron | 20.0% |
| ! | AGACTTAGAAAAACTATTAG+AGG | + | chr8.4:10638079-10638098 | MS.gene26620:intron | 25.0% |
| ! | ATATGGATGATAAAGAAGAA+AGG | - | chr8.4:10636444-10636463 | None:intergenic | 25.0% |
| ! | ATCATCCATATCACTTAATT+AGG | + | chr8.4:10636453-10636472 | MS.gene26620:intron | 25.0% |
| ! | ATGAAACCTGAAGAAATAAT+TGG | - | chr8.4:10636496-10636515 | None:intergenic | 25.0% |
| ! | ATTAAATCAGTATAATCACC+TGG | - | chr8.4:10637987-10638006 | None:intergenic | 25.0% |
| ! | ATTGTTTCGTTTATTCCTTT+GGG | + | chr8.4:10638765-10638784 | MS.gene26620:intron | 25.0% |
| ! | CTTGTCATTGATATGTTATT+GGG | + | chr8.4:10638323-10638342 | MS.gene26620:intron | 25.0% |
| ! | GAAATCAACTGATATCATAT+AGG | - | chr8.4:10638948-10638967 | None:intergenic | 25.0% |
| ! | GGATCATTAAATTCATTTCT+GGG | - | chr8.4:10639135-10639154 | None:intergenic | 25.0% |
| ! | TAAACCCTAATTAAGTGATA+TGG | - | chr8.4:10636461-10636480 | None:intergenic | 25.0% |
| ! | TAAACGAACCAACATTTAAA+TGG | - | chr8.4:10638622-10638641 | None:intergenic | 25.0% |
| ! | TATATCGAGTAATGCTAAAT+AGG | - | chr8.4:10637728-10637747 | None:intergenic | 25.0% |
| ! | TATTAGAGGATCTATTAAGA+AGG | + | chr8.4:10638093-10638112 | MS.gene26620:intron | 25.0% |
| ! | TATTGTTTCGTTTATTCCTT+TGG | + | chr8.4:10638764-10638783 | MS.gene26620:intron | 25.0% |
| ! | TCATCCATATCACTTAATTA+GGG | + | chr8.4:10636454-10636473 | MS.gene26620:intron | 25.0% |
| ! | TGGATCATTAAATTCATTTC+TGG | - | chr8.4:10639136-10639155 | None:intergenic | 25.0% |
| ! | TTAATAAGAAAATGGATACC+TGG | - | chr8.4:10636565-10636584 | None:intergenic | 25.0% |
| ! | TTACTGTGAATATTAGCAAA+TGG | + | chr8.4:10637782-10637801 | MS.gene26620:intron | 25.0% |
| ! | TTAGATGTCTATAATTGAGA+AGG | + | chr8.4:10637553-10637572 | MS.gene26620:intron | 25.0% |
| ! | TTATCACTTGCTCAAATATT+TGG | + | chr8.4:10637358-10637377 | MS.gene26620:intron | 25.0% |
| !! | ATGATTCTTGAAAATTTTGG+CGG | + | chr8.4:10638793-10638812 | MS.gene26620:intron | 25.0% |
| !! | TCAATTCCAATTATTTCTTC+AGG | + | chr8.4:10636487-10636506 | MS.gene26620:intron | 25.0% |
| !! | TGTTTTGTCCATTTAAATGT+TGG | + | chr8.4:10638611-10638630 | MS.gene26620:intron | 25.0% |
| !! | TTTTGAACAAGAAATTTTGG+CGG | + | chr8.4:10638834-10638853 | MS.gene26620:intron | 25.0% |
| !!! | ATTGATTTTTTGAAAACCTG+TGG | + | chr8.4:10638390-10638409 | MS.gene26620:intron | 25.0% |
| !!! | CACTATTTTAGTAAATGATG+CGG | - | chr8.4:10636920-10636939 | None:intergenic | 25.0% |
| !!! | TTGATTTTTTGAAAACCTGT+GGG | + | chr8.4:10638391-10638410 | MS.gene26620:intron | 25.0% |
| AACCAAAAATCATATGCCTA+AGG | + | chr8.4:10636763-10636782 | MS.gene26620:intron | 30.0% | |
| ACCAAAAATCATATGCCTAA+GGG | + | chr8.4:10636764-10636783 | MS.gene26620:intron | 30.0% | |
| ATATGACAAGCATTTCAAGA+TGG | + | chr8.4:10638286-10638305 | MS.gene26620:intron | 30.0% | |
| CGAAAATTATGTCAATGATC+AGG | + | chr8.4:10636415-10636434 | MS.gene26620:CDS | 30.0% | |
| CTCAATTATAGACATCTAAC+AGG | - | chr8.4:10637552-10637571 | None:intergenic | 30.0% | |
| GCTTGTCATTGATATGTTAT+TGG | + | chr8.4:10638322-10638341 | MS.gene26620:intron | 30.0% | |
| TCCAAAACTTAGTTTAACTC+CGG | + | chr8.4:10638704-10638723 | MS.gene26620:intron | 30.0% | |
| TGTTCTCATGCATAATTGAT+TGG | + | chr8.4:10637504-10637523 | MS.gene26620:intron | 30.0% | |
| TTGTTTCGTTTATTCCTTTG+GGG | + | chr8.4:10638766-10638785 | MS.gene26620:intron | 30.0% | |
| ! | AATACCTATATCTAAAGCTG+TGG | + | chr8.4:10637020-10637039 | MS.gene26620:intron | 30.0% |
| ! | CATTAAATTCATTTCTGGGA+AGG | - | chr8.4:10639131-10639150 | None:intergenic | 30.0% |
| ! | GCAGTGTTTTTCTTCAAAAT+TGG | - | chr8.4:10639156-10639175 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATAAATCACTG+TGG | + | chr8.4:10638146-10638165 | MS.gene26620:intron | 30.0% |
| ! | TTTCTCAAATACAAGAGTGT+TGG | + | chr8.4:10638882-10638901 | MS.gene26620:intron | 30.0% |
| !! | CTACTAATAGTGGACAAATT+GGG | - | chr8.4:10637071-10637090 | None:intergenic | 30.0% |
| !! | GTTTAGTATTGACTCTGATT+TGG | + | chr8.4:10638432-10638451 | MS.gene26620:intron | 30.0% |
| !! | TACTAATAGTGGACAAATTG+GGG | - | chr8.4:10637070-10637089 | None:intergenic | 30.0% |
| !! | TCTACTAATAGTGGACAAAT+TGG | - | chr8.4:10637072-10637091 | None:intergenic | 30.0% |
| !! | TGGGGATTTTTGTTTATCTT+TGG | + | chr8.4:10638410-10638429 | MS.gene26620:intron | 30.0% |
| !! | TTGACATAATTTTCGAGATC+TGG | - | chr8.4:10636410-10636429 | None:intergenic | 30.0% |
| !!! | AGTTTTGGAGAATTAATGCA+AGG | - | chr8.4:10638693-10638712 | None:intergenic | 30.0% |
| !!! | TGATTTTTTGAAAACCTGTG+GGG | + | chr8.4:10638392-10638411 | MS.gene26620:intron | 30.0% |
| AATTATTGCAGGATTTGAGC+AGG | + | chr8.4:10638507-10638526 | MS.gene26620:intron | 35.0% | |
| AGATAAACAAAAATCCCCAC+AGG | - | chr8.4:10638409-10638428 | None:intergenic | 35.0% | |
| ATCAGATATTTGTAACCGCA+AGG | - | chr8.4:10638266-10638285 | None:intergenic | 35.0% | |
| CAAGAATCATTTAACCCCAA+AGG | - | chr8.4:10638783-10638802 | None:intergenic | 35.0% | |
| CAATGTAGAAGGTTTATCCT+TGG | + | chr8.4:10639029-10639048 | MS.gene26620:CDS | 35.0% | |
| CTGTGAATATTAGCAAATGG+AGG | + | chr8.4:10637785-10637804 | MS.gene26620:intron | 35.0% | |
| GAATAGGCTATCAATGTAGA+AGG | + | chr8.4:10639018-10639037 | MS.gene26620:intron | 35.0% | |
| GCTTATCATGATAAGCACTT+TGG | + | chr8.4:10637284-10637303 | MS.gene26620:intron | 35.0% | |
| GTTTCTCTTATAGTTTCTCC+AGG | + | chr8.4:10638027-10638046 | MS.gene26620:intron | 35.0% | |
| TATGCGTTCATTCATCAAAC+CGG | - | chr8.4:10638726-10638745 | None:intergenic | 35.0% | |
| TATTCTTCTCTTCTTCAGAC+TGG | + | chr8.4:10637903-10637922 | MS.gene26620:intron | 35.0% | |
| TCGAGTAATGCTAAATAGGA+AGG | - | chr8.4:10637724-10637743 | None:intergenic | 35.0% | |
| TGTTCTGTCTCACTATTTAG+AGG | + | chr8.4:10637827-10637846 | MS.gene26620:CDS | 35.0% | |
| TTATAGACATCTAACAGGAG+TGG | - | chr8.4:10637547-10637566 | None:intergenic | 35.0% | |
| ! | ACCGGAGTTAAACTAAGTTT+TGG | - | chr8.4:10638708-10638727 | None:intergenic | 35.0% |
| ! | AGGAATCTTTTGGTAAGTCA+AGG | - | chr8.4:10638563-10638582 | None:intergenic | 35.0% |
| ! | AGTGATAATGTCAGCTATCT+TGG | - | chr8.4:10637346-10637365 | None:intergenic | 35.0% |
| ! | ATATCTAAAGCTGTGGCAAT+AGG | + | chr8.4:10637027-10637046 | MS.gene26620:intron | 35.0% |
| ! | ATCTGAGAACTCATTTTCTC+AGG | - | chr8.4:10636682-10636701 | None:intergenic | 35.0% |
| ! | GTCAATCTTTTGTGTTACAC+AGG | + | chr8.4:10637613-10637632 | MS.gene26620:intron | 35.0% |
| ! | TCATATGCCTAAGGGATTTT+TGG | + | chr8.4:10636772-10636791 | MS.gene26620:intron | 35.0% |
| ! | TCCCTTAGGCATATGATTTT+TGG | - | chr8.4:10636768-10636787 | None:intergenic | 35.0% |
| ! | TGATGAGTTGGAAAAAGACA+TGG | + | chr8.4:10638126-10638145 | MS.gene26620:intron | 35.0% |
| !! | ATTGCCACAGCTTTAGATAT+AGG | - | chr8.4:10637027-10637046 | None:intergenic | 35.0% |
| !! | CCTATGTCTCTTTTTGATTC+CGG | + | chr8.4:10637429-10637448 | MS.gene26620:CDS | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+CGG | - | chr8.4:10637196-10637215 | None:intergenic | 35.0% |
| !! | TTGACTCTGATTTGGCTTAT+AGG | + | chr8.4:10638440-10638459 | MS.gene26620:intron | 35.0% |
| !!! | TGTTTTTTAATAGGCCCTCA+TGG | + | chr8.4:10637384-10637403 | MS.gene26620:intron | 35.0% |
| AAGAATCATACCACACGTTC+CGG | - | chr8.4:10637451-10637470 | None:intergenic | 40.0% | |
| AATCCCAAACAGTTCGATTG+GGG | + | chr8.4:10637115-10637134 | MS.gene26620:intron | 40.0% | |
| AGAAAATGGATACCTGGTAG+AGG | - | chr8.4:10636559-10636578 | None:intergenic | 40.0% | |
| AGCCAATCCAAAAATCCCTT+AGG | - | chr8.4:10636782-10636801 | None:intergenic | 40.0% | |
| CCCCTAAATCACTAGAAGTA+GGG | + | chr8.4:10638054-10638073 | MS.gene26620:intron | 40.0% | |
| CCCCTACTTCTAGTGATTTA+GGG | - | chr8.4:10638058-10638077 | None:intergenic | 40.0% | |
| CCCTAAATCACTAGAAGTAG+GGG | + | chr8.4:10638055-10638074 | MS.gene26620:intron | 40.0% | |
| CCCTACTTCTAGTGATTTAG+GGG | - | chr8.4:10638057-10638076 | None:intergenic | 40.0% | |
| CCGGAATCAAAAAGAGACAT+AGG | - | chr8.4:10637432-10637451 | None:intergenic | 40.0% | |
| GAATCCCAAACAGTTCGATT+GGG | + | chr8.4:10637114-10637133 | MS.gene26620:intron | 40.0% | |
| GGATCTAGAGATTGATGAGT+TGG | + | chr8.4:10638114-10638133 | MS.gene26620:intron | 40.0% | |
| GTGTTCAAGGAATTTGTCCA+AGG | - | chr8.4:10639049-10639068 | None:intergenic | 40.0% | |
| GTTAATTGCGTCGTGTAACT+GGG | + | chr8.4:10638237-10638256 | MS.gene26620:intron | 40.0% | |
| TACCATTGGAGCACATTAGA+CGG | + | chr8.4:10639184-10639203 | MS.gene26620:CDS | 40.0% | |
| TCCCCTAAATCACTAGAAGT+AGG | + | chr8.4:10638053-10638072 | MS.gene26620:intron | 40.0% | |
| TCCCCTACTTCTAGTGATTT+AGG | - | chr8.4:10638059-10638078 | None:intergenic | 40.0% | |
| TCGAGATCTGGAAGAATATC+TGG | - | chr8.4:10636398-10636417 | None:intergenic | 40.0% | |
| TCTTTGAACTGCGTAAGTCA+TGG | - | chr8.4:10637870-10637889 | None:intergenic | 40.0% | |
| TGAATCCCAAACAGTTCGAT+TGG | + | chr8.4:10637113-10637132 | MS.gene26620:intron | 40.0% | |
| TGGGTTATTGAGAAAAGCCA+GGG | + | chr8.4:10639087-10639106 | MS.gene26620:CDS | 40.0% | |
| TGTTAATTGCGTCGTGTAAC+TGG | + | chr8.4:10638236-10638255 | MS.gene26620:intron | 40.0% | |
| TTGGGTTATTGAGAAAAGCC+AGG | + | chr8.4:10639086-10639105 | MS.gene26620:CDS | 40.0% | |
| ! | TGTTTGGGATTCAGAAGTGA+AGG | - | chr8.4:10637106-10637125 | None:intergenic | 40.0% |
| ! | TTACCCATTGTTGGTTGGTA+AGG | + | chr8.4:10636986-10637005 | MS.gene26620:intron | 40.0% |
| !! | AGAGTTTGTTGTGCTTCTTG+TGG | + | chr8.4:10636874-10636893 | MS.gene26620:intron | 40.0% |
| !! | TCCTTGCTGTTGTACTTGTA+CGG | - | chr8.4:10636315-10636334 | None:intergenic | 40.0% |
| !! | TGCCTAAGGGATTTTTGGAT+TGG | + | chr8.4:10636777-10636796 | MS.gene26620:intron | 40.0% |
| !!! | GCACAGTTCTAGGAATCTTT+TGG | - | chr8.4:10638573-10638592 | None:intergenic | 40.0% |
| AAGAGACATAGGCTGAAGTC+TGG | - | chr8.4:10637421-10637440 | None:intergenic | 45.0% | |
| ACGCCTTACCAACCAACAAT+GGG | - | chr8.4:10636992-10637011 | None:intergenic | 45.0% | |
| ATCCCAAACAGTTCGATTGG+GGG | + | chr8.4:10637116-10637135 | MS.gene26620:intron | 45.0% | |
| ATCCGTCTAATGTGCTCCAA+TGG | - | chr8.4:10639189-10639208 | None:intergenic | 45.0% | |
| ATGTAGCCAACCTCACTTAG+TGG | + | chr8.4:10638182-10638201 | MS.gene26620:intron | 45.0% | |
| CAACCAACAATGGGTAACGA+TGG | - | chr8.4:10636983-10637002 | None:intergenic | 45.0% | |
| CAACCTCACTTAGTGGGATA+AGG | + | chr8.4:10638189-10638208 | MS.gene26620:intron | 45.0% | |
| CAAGTACAACAGCAAGGACA+AGG | + | chr8.4:10636317-10636336 | MS.gene26620:CDS | 45.0% | |
| CACTGCAGATAGTGTACCAT+TGG | + | chr8.4:10639170-10639189 | MS.gene26620:CDS | 45.0% | |
| CATATAGTTGAAGCTGTGCC+AGG | + | chr8.4:10637966-10637985 | MS.gene26620:CDS | 45.0% | |
| CATCGTTACCCATTGTTGGT+TGG | + | chr8.4:10636981-10637000 | MS.gene26620:intron | 45.0% | |
| CTCAATAACCCAACCAGAGT+TGG | - | chr8.4:10639079-10639098 | None:intergenic | 45.0% | |
| CTTATCCCACTAAGTGAGGT+TGG | - | chr8.4:10638191-10638210 | None:intergenic | 45.0% | |
| CTTCTCTTCTTCAGACTGGA+AGG | + | chr8.4:10637907-10637926 | MS.gene26620:intron | 45.0% | |
| GAACATGAATCGCATAGCCT+TGG | - | chr8.4:10638537-10638556 | None:intergenic | 45.0% | |
| GGGTTATTGAGAAAAGCCAG+GGG | + | chr8.4:10639088-10639107 | MS.gene26620:CDS | 45.0% | |
| TACGCCTTACCAACCAACAA+TGG | - | chr8.4:10636993-10637012 | None:intergenic | 45.0% | |
| TAGTGATTTAGGGGAAGACC+TGG | - | chr8.4:10638048-10638067 | None:intergenic | 45.0% | |
| TATTGAGAAAAGCCAGGGGA+CGG | + | chr8.4:10639092-10639111 | MS.gene26620:CDS | 45.0% | |
| TCACTTAGTGGGATAAGGCT+TGG | + | chr8.4:10638194-10638213 | MS.gene26620:intron | 45.0% | |
| TCAGATCGTTGCTCGCATAT+TGG | + | chr8.4:10636696-10636715 | MS.gene26620:CDS | 45.0% | |
| TGGAAGGTTTCGTCAGTTCT+GGG | + | chr8.4:10637923-10637942 | MS.gene26620:CDS | 45.0% | |
| TGTAGCCAACCTCACTTAGT+GGG | + | chr8.4:10638183-10638202 | MS.gene26620:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+AGG | - | chr8.4:10638195-10638214 | None:intergenic | 45.0% |
| ! | ATGGGCGGTTTTGCTAGAAT+AGG | - | chr8.4:10636955-10636974 | None:intergenic | 45.0% |
| ! | CGTTGCTCGCATATTGGTTA+AGG | + | chr8.4:10636702-10636721 | MS.gene26620:CDS | 45.0% |
| ! | GAAGGCAGAGATTTGATTCG+AGG | - | chr8.4:10636532-10636551 | None:intergenic | 45.0% |
| !! | AGTTGGCTACTTGGTGTTCA+AGG | - | chr8.4:10639062-10639081 | None:intergenic | 45.0% |
| !! | CTTTTTGATTCCGGAACGTG+TGG | + | chr8.4:10637438-10637457 | MS.gene26620:CDS | 45.0% |
| !! | TCAGCTATCTTGGCTCTGTT+TGG | - | chr8.4:10637336-10637355 | None:intergenic | 45.0% |
| ACAACAGCAAGGACAAGGAC+AGG | + | chr8.4:10636322-10636341 | MS.gene26620:CDS | 50.0% | |
| ACCAAGTAGCCAACTCTGGT+TGG | + | chr8.4:10639067-10639086 | MS.gene26620:CDS | 50.0% | |
| ACCTCAGCAAGCACAGTTCT+AGG | - | chr8.4:10638583-10638602 | None:intergenic | 50.0% | |
| ATACCTGGTAGAGGCGAAGA+AGG | - | chr8.4:10636550-10636569 | None:intergenic | 50.0% | |
| ATTGAGAAAAGCCAGGGGAC+GGG | + | chr8.4:10639093-10639112 | MS.gene26620:CDS | 50.0% | |
| CAACAGCAAGGACAAGGACA+GGG | + | chr8.4:10636323-10636342 | MS.gene26620:CDS | 50.0% | |
| CCAAGTAGCCAACTCTGGTT+GGG | + | chr8.4:10639068-10639087 | MS.gene26620:CDS | 50.0% | |
| CTGGAAGGTTTCGTCAGTTC+TGG | + | chr8.4:10637922-10637941 | MS.gene26620:CDS | 50.0% | |
| GAACACCAAGTAGCCAACTC+TGG | + | chr8.4:10639063-10639082 | MS.gene26620:CDS | 50.0% | |
| GACCCCCAATCGAACTGTTT+GGG | - | chr8.4:10637121-10637140 | None:intergenic | 50.0% | |
| GAGCCATCGTTACCCATTGT+TGG | + | chr8.4:10636977-10636996 | MS.gene26620:intron | 50.0% | |
| GAGCTGTTCGACAGTGTAAG+CGG | - | chr8.4:10636354-10636373 | None:intergenic | 50.0% | |
| GCCGTACAAGTACAACAGCA+AGG | + | chr8.4:10636311-10636330 | MS.gene26620:CDS | 50.0% | |
| GGATTTGAGCAGGCAATCCA+AGG | + | chr8.4:10638517-10638536 | MS.gene26620:intron | 50.0% | |
| TGACCCCCAATCGAACTGTT+TGG | - | chr8.4:10637122-10637141 | None:intergenic | 50.0% | |
| ! | TCCTAGAACTGTGCTTGCTG+AGG | + | chr8.4:10638579-10638598 | MS.gene26620:CDS | 50.0% |
| !! | ATGGGTAACGATGGCTCTGA+TGG | - | chr8.4:10636974-10636993 | None:intergenic | 50.0% |
| !! | TGGGTAACGATGGCTCTGAT+GGG | - | chr8.4:10636973-10636992 | None:intergenic | 50.0% |
| CCCAACCAGAGTTGGCTACT+TGG | - | chr8.4:10639071-10639090 | None:intergenic | 55.0% | |
| CGTGTAACTGGGAAGCCTTG+CGG | + | chr8.4:10638248-10638267 | MS.gene26620:intron | 55.0% | |
| TGGAGCTGGCATAGCCATGA+GGG | - | chr8.4:10637401-10637420 | None:intergenic | 55.0% | |
| ! | CATAGGCTGAAGTCTGGAGC+TGG | - | chr8.4:10637415-10637434 | None:intergenic | 55.0% |
| !! | GTAACGATGGCTCTGATGGG+CGG | - | chr8.4:10636970-10636989 | None:intergenic | 55.0% |
| CAGCAAGGACAAGGACAGGG+AGG | + | chr8.4:10636326-10636345 | MS.gene26620:CDS | 60.0% | |
| CTGCCTTCTTCGCCTCTACC+AGG | + | chr8.4:10636544-10636563 | MS.gene26620:CDS | 60.0% | |
| CTGGAGCTGGCATAGCCATG+AGG | - | chr8.4:10637402-10637421 | None:intergenic | 60.0% | |
| ! | CGATGAGTTGACCCGTCCCC+TGG | - | chr8.4:10639107-10639126 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 10636287 | 10639227 | 10636287 | ID=MS.gene26620 |
| chr8.4 | mRNA | 10636287 | 10639227 | 10636287 | ID=MS.gene26620.t1;Parent=MS.gene26620 |
| chr8.4 | exon | 10636287 | 10636436 | 10636287 | ID=MS.gene26620.t1.exon1;Parent=MS.gene26620.t1 |
| chr8.4 | CDS | 10636287 | 10636436 | 10636287 | ID=cds.MS.gene26620.t1;Parent=MS.gene26620.t1 |
| chr8.4 | exon | 10636509 | 10636565 | 10636509 | ID=MS.gene26620.t1.exon2;Parent=MS.gene26620.t1 |
| chr8.4 | CDS | 10636509 | 10636565 | 10636509 | ID=cds.MS.gene26620.t1;Parent=MS.gene26620.t1 |
| chr8.4 | exon | 10636673 | 10636723 | 10636673 | ID=MS.gene26620.t1.exon3;Parent=MS.gene26620.t1 |
| chr8.4 | CDS | 10636673 | 10636723 | 10636673 | ID=cds.MS.gene26620.t1;Parent=MS.gene26620.t1 |
| chr8.4 | exon | 10637397 | 10637459 | 10637397 | ID=MS.gene26620.t1.exon4;Parent=MS.gene26620.t1 |
| chr8.4 | CDS | 10637397 | 10637459 | 10637397 | ID=cds.MS.gene26620.t1;Parent=MS.gene26620.t1 |
| chr8.4 | exon | 10637798 | 10637848 | 10637798 | ID=MS.gene26620.t1.exon5;Parent=MS.gene26620.t1 |
| chr8.4 | CDS | 10637798 | 10637848 | 10637798 | ID=cds.MS.gene26620.t1;Parent=MS.gene26620.t1 |
| chr8.4 | exon | 10637921 | 10637987 | 10637921 | ID=MS.gene26620.t1.exon6;Parent=MS.gene26620.t1 |
| chr8.4 | CDS | 10637921 | 10637987 | 10637921 | ID=cds.MS.gene26620.t1;Parent=MS.gene26620.t1 |
| chr8.4 | exon | 10638518 | 10638600 | 10638518 | ID=MS.gene26620.t1.exon7;Parent=MS.gene26620.t1 |
| chr8.4 | CDS | 10638518 | 10638600 | 10638518 | ID=cds.MS.gene26620.t1;Parent=MS.gene26620.t1 |
| chr8.4 | exon | 10639024 | 10639227 | 10639024 | ID=MS.gene26620.t1.exon8;Parent=MS.gene26620.t1 |
| chr8.4 | CDS | 10639024 | 10639227 | 10639024 | ID=cds.MS.gene26620.t1;Parent=MS.gene26620.t1 |
| Gene Sequence |
| Protein sequence |
