Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057643.t1 | XP_003606958.1 | 100 | 80 | 0 | 0 | 28 | 107 | 28 | 107 | 2.20E-34 | 154.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057643.t1 | Q9SIK2 | 93.8 | 80 | 5 | 0 | 28 | 107 | 29 | 108 | 1.7e-35 | 149.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057643.t1 | B7FH10 | 100.0 | 80 | 0 | 0 | 28 | 107 | 28 | 107 | 1.6e-34 | 154.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene057643 | 0.832694 | 8.17E-56 | -1.69E-46 |
| MS.gene049387 | MS.gene057643 | 0.857801 | 1.27E-62 | -1.69E-46 |
| MS.gene050134 | MS.gene057643 | 0.903261 | 4.16E-79 | -1.69E-46 |
| MS.gene050252 | MS.gene057643 | 0.83137 | 1.73E-55 | -1.69E-46 |
| MS.gene050638 | MS.gene057643 | -0.851691 | 7.52E-61 | -1.69E-46 |
| MS.gene050791 | MS.gene057643 | 0.859045 | 5.43E-63 | -1.69E-46 |
| MS.gene050912 | MS.gene057643 | 0.849456 | 3.20E-60 | -1.69E-46 |
| MS.gene051904 | MS.gene057643 | 0.840232 | 9.85E-58 | -1.69E-46 |
| MS.gene051984 | MS.gene057643 | 0.831606 | 1.52E-55 | -1.69E-46 |
| MS.gene052412 | MS.gene057643 | 0.815234 | 1.03E-51 | -1.69E-46 |
| MS.gene052664 | MS.gene057643 | 0.894964 | 1.50E-75 | -1.69E-46 |
| MS.gene052666 | MS.gene057643 | 0.917128 | 7.74E-86 | -1.69E-46 |
| MS.gene053224 | MS.gene057643 | 0.889699 | 1.92E-73 | -1.69E-46 |
| MS.gene057237 | MS.gene057643 | 0.835429 | 1.69E-56 | -1.69E-46 |
| MS.gene057272 | MS.gene057643 | 0.883268 | 5.18E-71 | -1.69E-46 |
| MS.gene057641 | MS.gene057643 | 0.947987 | 2.30E-106 | -1.69E-46 |
| MS.gene057643 | MS.gene059340 | 0.840675 | 7.54E-58 | -1.69E-46 |
| MS.gene057643 | MS.gene059878 | 0.815314 | 9.85E-52 | -1.69E-46 |
| MS.gene057643 | MS.gene059880 | 0.820404 | 6.98E-53 | -1.69E-46 |
| MS.gene057643 | MS.gene060432 | 0.852154 | 5.56E-61 | -1.69E-46 |
| MS.gene057643 | MS.gene060483 | 0.900737 | 5.43E-78 | -1.69E-46 |
| MS.gene057643 | MS.gene06169 | 0.864333 | 1.31E-64 | -1.69E-46 |
| MS.gene057643 | MS.gene063093 | 0.812723 | 3.67E-51 | -1.69E-46 |
| MS.gene057643 | MS.gene06583 | 0.82783 | 1.26E-54 | -1.69E-46 |
| MS.gene057643 | MS.gene06617 | 0.912188 | 2.59E-83 | -1.69E-46 |
| MS.gene057643 | MS.gene066583 | 0.801369 | 9.30E-49 | -1.69E-46 |
| MS.gene057643 | MS.gene066811 | 0.877884 | 4.39E-69 | -1.69E-46 |
| MS.gene057643 | MS.gene067331 | 0.88115 | 3.05E-70 | -1.69E-46 |
| MS.gene057643 | MS.gene06803 | 0.865718 | 4.82E-65 | -1.69E-46 |
| MS.gene057643 | MS.gene06833 | 0.912207 | 2.54E-83 | -1.69E-46 |
| MS.gene057643 | MS.gene06999 | 0.839754 | 1.31E-57 | -1.69E-46 |
| MS.gene057643 | MS.gene07018 | 0.801658 | 8.12E-49 | -1.69E-46 |
| MS.gene057643 | MS.gene072093 | 0.858948 | 5.80E-63 | -1.69E-46 |
| MS.gene057643 | MS.gene07244 | 0.852714 | 3.85E-61 | -1.69E-46 |
| MS.gene057643 | MS.gene072503 | 0.851257 | 9.99E-61 | -1.69E-46 |
| MS.gene057643 | MS.gene072589 | 0.851463 | 8.73E-61 | -1.69E-46 |
| MS.gene057643 | MS.gene072591 | 0.834622 | 2.69E-56 | -1.69E-46 |
| MS.gene057643 | MS.gene072977 | 0.816595 | 5.10E-52 | -1.69E-46 |
| MS.gene057643 | MS.gene073358 | 0.855073 | 8.06E-62 | -1.69E-46 |
| MS.gene057643 | MS.gene074400 | 0.85234 | 4.92E-61 | -1.69E-46 |
| MS.gene057643 | MS.gene08521 | 0.88462 | 1.64E-71 | -1.69E-46 |
| MS.gene057643 | MS.gene08869 | 0.871826 | 5.08E-67 | -1.69E-46 |
| MS.gene057643 | MS.gene08870 | 0.893634 | 5.24E-75 | -1.69E-46 |
| MS.gene057643 | MS.gene08871 | 0.898794 | 3.74E-77 | -1.69E-46 |
| MS.gene057643 | MS.gene09038 | 0.845932 | 2.98E-59 | -1.69E-46 |
| MS.gene057643 | MS.gene09204 | 0.848853 | 4.70E-60 | -1.69E-46 |
| MS.gene057643 | MS.gene09761 | 0.864146 | 1.50E-64 | -1.69E-46 |
| MS.gene057643 | MS.gene09762 | 0.814983 | 1.17E-51 | -1.69E-46 |
| MS.gene057643 | MS.gene09779 | 0.872699 | 2.60E-67 | -1.69E-46 |
| MS.gene057643 | MS.gene09780 | 0.85231 | 5.02E-61 | -1.69E-46 |
| MS.gene057643 | MS.gene20153 | 0.866457 | 2.81E-65 | -1.69E-46 |
| MS.gene057643 | MS.gene20766 | 0.855194 | 7.43E-62 | -1.69E-46 |
| MS.gene057643 | MS.gene22784 | 0.848936 | 4.46E-60 | -1.69E-46 |
| MS.gene057643 | MS.gene22805 | -0.855851 | 4.78E-62 | -1.69E-46 |
| MS.gene057643 | MS.gene23031 | 0.916446 | 1.76E-85 | -1.69E-46 |
| MS.gene057643 | MS.gene23303 | 0.918716 | 1.11E-86 | -1.69E-46 |
| MS.gene057643 | MS.gene23314 | 0.825608 | 4.27E-54 | -1.69E-46 |
| MS.gene057643 | MS.gene24232 | 0.856873 | 2.40E-62 | -1.69E-46 |
| MS.gene057643 | MS.gene24639 | 0.881491 | 2.30E-70 | -1.69E-46 |
| MS.gene057643 | MS.gene25236 | 0.84284 | 2.02E-58 | -1.69E-46 |
| MS.gene057643 | MS.gene25639 | 0.841383 | 4.91E-58 | -1.69E-46 |
| MS.gene057643 | MS.gene25903 | 0.895295 | 1.10E-75 | -1.69E-46 |
| MS.gene057643 | MS.gene26005 | 0.822228 | 2.65E-53 | -1.69E-46 |
| MS.gene057643 | MS.gene26343 | 0.808916 | 2.45E-50 | -1.69E-46 |
| MS.gene057643 | MS.gene26620 | 0.80868 | 2.75E-50 | -1.69E-46 |
| MS.gene057643 | MS.gene26707 | 0.85616 | 3.88E-62 | -1.69E-46 |
| MS.gene057643 | MS.gene27003 | 0.87578 | 2.35E-68 | -1.69E-46 |
| MS.gene057643 | MS.gene27265 | 0.873441 | 1.47E-67 | -1.69E-46 |
| MS.gene057643 | MS.gene28147 | 0.915323 | 6.75E-85 | -1.69E-46 |
| MS.gene057643 | MS.gene31039 | 0.809039 | 2.30E-50 | -1.69E-46 |
| MS.gene057643 | MS.gene32591 | 0.818172 | 2.25E-52 | -1.69E-46 |
| MS.gene057643 | MS.gene34372 | 0.834748 | 2.51E-56 | -1.69E-46 |
| MS.gene057643 | MS.gene36310 | 0.804928 | 1.71E-49 | -1.69E-46 |
| MS.gene057643 | MS.gene38035 | 0.867315 | 1.50E-65 | -1.69E-46 |
| MS.gene057643 | MS.gene38222 | 0.855511 | 6.01E-62 | -1.69E-46 |
| MS.gene057643 | MS.gene39902 | 0.811168 | 8.01E-51 | -1.69E-46 |
| MS.gene057643 | MS.gene40285 | 0.809161 | 2.17E-50 | -1.69E-46 |
| MS.gene057643 | MS.gene41726 | 0.82612 | 3.23E-54 | -1.69E-46 |
| MS.gene057643 | MS.gene43071 | 0.828269 | 9.87E-55 | -1.69E-46 |
| MS.gene057643 | MS.gene46387 | 0.874418 | 6.86E-68 | -1.69E-46 |
| MS.gene057643 | MS.gene46907 | 0.81852 | 1.88E-52 | -1.69E-46 |
| MS.gene057643 | MS.gene50269 | 0.818162 | 2.26E-52 | -1.69E-46 |
| MS.gene057643 | MS.gene50640 | 0.873364 | 1.56E-67 | -1.69E-46 |
| MS.gene057643 | MS.gene50756 | 0.991257 | 1.07E-186 | -1.69E-46 |
| MS.gene057643 | MS.gene50758 | 0.960793 | 5.83E-119 | -1.69E-46 |
| MS.gene057643 | MS.gene51868 | 0.815947 | 7.12E-52 | -1.69E-46 |
| MS.gene057643 | MS.gene52415 | 0.878173 | 3.48E-69 | -1.69E-46 |
| MS.gene057643 | MS.gene55619 | 0.906521 | 1.36E-80 | -1.69E-46 |
| MS.gene057643 | MS.gene55890 | 0.911322 | 6.94E-83 | -1.69E-46 |
| MS.gene057643 | MS.gene58173 | 0.865986 | 3.96E-65 | -1.69E-46 |
| MS.gene057643 | MS.gene59228 | 0.852598 | 4.16E-61 | -1.69E-46 |
| MS.gene057643 | MS.gene59230 | 0.873346 | 1.58E-67 | -1.69E-46 |
| MS.gene057643 | MS.gene59609 | 0.852002 | 6.14E-61 | -1.69E-46 |
| MS.gene057643 | MS.gene60693 | 0.820088 | 8.25E-53 | -1.69E-46 |
| MS.gene057643 | MS.gene61251 | 0.848431 | 6.16E-60 | -1.69E-46 |
| MS.gene057643 | MS.gene62561 | 0.874811 | 5.04E-68 | -1.69E-46 |
| MS.gene057643 | MS.gene62620 | 0.807665 | 4.52E-50 | -1.69E-46 |
| MS.gene057643 | MS.gene62683 | 0.828151 | 1.05E-54 | -1.69E-46 |
| MS.gene057643 | MS.gene62695 | 0.898294 | 6.11E-77 | -1.69E-46 |
| MS.gene057643 | MS.gene62791 | 0.853972 | 1.68E-61 | -1.69E-46 |
| MS.gene057643 | MS.gene63450 | 0.800042 | 1.73E-48 | -1.69E-46 |
| MS.gene057643 | MS.gene70316 | 0.912508 | 1.80E-83 | -1.69E-46 |
| MS.gene057643 | MS.gene70579 | 0.891634 | 3.32E-74 | -1.69E-46 |
| MS.gene057643 | MS.gene72382 | 0.891548 | 3.59E-74 | -1.69E-46 |
| MS.gene057643 | MS.gene73000 | 0.886682 | 2.77E-72 | -1.69E-46 |
| MS.gene057643 | MS.gene73833 | 0.839019 | 2.04E-57 | -1.69E-46 |
| MS.gene057643 | MS.gene74837 | 0.849308 | 3.51E-60 | -1.69E-46 |
| MS.gene057643 | MS.gene76031 | 0.857977 | 1.13E-62 | -1.69E-46 |
| MS.gene057643 | MS.gene76493 | 0.850273 | 1.89E-60 | -1.69E-46 |
| MS.gene057643 | MS.gene79721 | 0.887457 | 1.40E-72 | -1.69E-46 |
| MS.gene057643 | MS.gene80994 | 0.800173 | 1.63E-48 | -1.69E-46 |
| MS.gene057643 | MS.gene82009 | 0.847899 | 8.63E-60 | -1.69E-46 |
| MS.gene057643 | MS.gene82038 | 0.83521 | 1.92E-56 | -1.69E-46 |
| MS.gene057643 | MS.gene82545 | 0.844088 | 9.39E-59 | -1.69E-46 |
| MS.gene057643 | MS.gene83175 | 0.805991 | 1.02E-49 | -1.69E-46 |
| MS.gene057643 | MS.gene88918 | 0.857385 | 1.69E-62 | -1.69E-46 |
| MS.gene057643 | MS.gene90945 | 0.858681 | 6.97E-63 | -1.69E-46 |
| MS.gene057643 | MS.gene92142 | 0.845815 | 3.21E-59 | -1.69E-46 |
| MS.gene057643 | MS.gene95848 | 0.826409 | 2.76E-54 | -1.69E-46 |
| MS.gene057643 | MS.gene96194 | 0.825464 | 4.62E-54 | -1.69E-46 |
| MS.gene057643 | MS.gene96225 | 0.902051 | 1.44E-78 | -1.69E-46 |
| MS.gene057643 | MS.gene96825 | 0.877156 | 7.87E-69 | -1.69E-46 |
| MS.gene057643 | MS.gene98171 | 0.879659 | 1.04E-69 | -1.69E-46 |
| MS.gene057643 | MS.gene98978 | 0.807893 | 4.05E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057643.t1 | MTR_4g070600 | 100.000 | 107 | 0 | 0 | 1 | 107 | 1 | 107 | 1.06e-74 | 216 |
| MS.gene057643.t1 | MTR_2g086610 | 99.065 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 2.56e-74 | 215 |
| MS.gene057643.t1 | MTR_4g070600 | 99.065 | 107 | 0 | 1 | 1 | 107 | 1 | 106 | 3.00e-72 | 210 |
| MS.gene057643.t1 | MTR_6g015615 | 80.556 | 72 | 4 | 2 | 2 | 72 | 13 | 75 | 2.31e-17 | 70.9 |
| MS.gene057643.t1 | MTR_3g117040 | 80.556 | 72 | 4 | 2 | 2 | 72 | 13 | 75 | 2.31e-17 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057643.t1 | AT2G21580 | 92.593 | 108 | 7 | 1 | 1 | 107 | 1 | 108 | 6.71e-54 | 164 |
| MS.gene057643.t1 | AT4G39200 | 89.815 | 108 | 10 | 1 | 1 | 107 | 1 | 108 | 2.45e-52 | 160 |
| MS.gene057643.t1 | AT2G21580 | 88.889 | 108 | 10 | 2 | 1 | 107 | 1 | 107 | 3.02e-52 | 159 |
| MS.gene057643.t1 | AT4G39200 | 87.963 | 108 | 11 | 2 | 1 | 107 | 1 | 107 | 1.13e-50 | 155 |
| MS.gene057643.t1 | AT4G34555 | 89.720 | 107 | 10 | 1 | 1 | 106 | 1 | 107 | 3.02e-50 | 154 |
| MS.gene057643.t1 | AT2G16360 | 86.667 | 105 | 13 | 1 | 2 | 105 | 2 | 106 | 1.08e-46 | 145 |
Find 38 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGGTCTATGCAGATTAA+TGG | 0.196241 | 4.3:+34469769 | MS.gene057643:intron |
| AGGAGTGATGAGCTTGTATT+TGG | 0.258319 | 4.3:-34468518 | None:intergenic |
| CTGTTTGCCACCGCCAGATT+TGG | 0.259942 | 4.3:-34467601 | None:intergenic |
| GGAGGAGGAGCTGCCTTCTT+GGG | 0.308666 | 4.3:-34467564 | None:intergenic |
| TCCTCCAAGCCAGCCAAATC+TGG | 0.317280 | 4.3:+34467588 | MS.gene057643:CDS |
| ACCGCCAGATTTGGCTGGCT+TGG | 0.348344 | 4.3:-34467592 | None:intergenic |
| AGGAGGAGGAGCTGCCTTCT+TGG | 0.379715 | 4.3:-34467565 | None:intergenic |
| TGATGGCTAAAGGTTTAATC+AGG | 0.382324 | 4.3:+34469821 | MS.gene057643:CDS |
| CTGTCCTCTCTGATCGTTTG+AGG | 0.389732 | 4.3:+34468542 | MS.gene057643:CDS |
| GAGGGCTATAAGAGACTTGA+TGG | 0.404889 | 4.3:+34469804 | MS.gene057643:CDS |
| CACCTAGGTGTTTGTAGCCC+TGG | 0.406263 | 4.3:-34469878 | None:intergenic |
| TTGCCACCGCCAGATTTGGC+TGG | 0.423311 | 4.3:-34467597 | None:intergenic |
| CAACATGGTGCTGTTTGATC+AGG | 0.424061 | 4.3:+34468465 | MS.gene057643:CDS |
| TGTCCTCTCTGATCGTTTGA+GGG | 0.452861 | 4.3:+34468543 | MS.gene057643:CDS |
| GCCAGATTTGGCTGGCTTGG+AGG | 0.465517 | 4.3:-34467589 | None:intergenic |
| ATAAGAGACTTGATGGCTAA+AGG | 0.477465 | 4.3:+34469811 | MS.gene057643:CDS |
| GTGGAGCAAGGGAAAGCAAA+AGG | 0.500179 | 4.3:+34468432 | MS.gene057643:CDS |
| GCTGGCTTGGAGGAAGGAGG+AGG | 0.501135 | 4.3:-34467579 | None:intergenic |
| TTCAGTTAAGAGCTTGTCAT+AGG | 0.503535 | 4.3:-34468491 | None:intergenic |
| GGCTAAAGGTTTAATCAGGT+TGG | 0.524410 | 4.3:+34469825 | MS.gene057643:CDS |
| TAATGGATCACTTGCAAGGA+GGG | 0.537201 | 4.3:+34469786 | MS.gene057643:CDS |
| GATTTGGCTGGCTTGGAGGA+AGG | 0.542704 | 4.3:-34467585 | None:intergenic |
| CAAGTCAGCAGATTTACACC+AGG | 0.557612 | 4.3:+34469860 | MS.gene057643:CDS |
| TGTTTAACAGAAGTGGAGCA+AGG | 0.569376 | 4.3:+34468420 | MS.gene057643:intron |
| AAGCCAGCCAAATCTGGCGG+TGG | 0.569616 | 4.3:+34467594 | MS.gene057643:CDS |
| GGAGTGATGAGCTTGTATTT+GGG | 0.571965 | 4.3:-34468517 | None:intergenic |
| AAACGATCAGAGAGGACAGA+AGG | 0.576753 | 4.3:-34468538 | None:intergenic |
| TTGGCTGGCTTGGAGGAAGG+AGG | 0.587842 | 4.3:-34467582 | None:intergenic |
| CGGTGGCAAACAGAAGAAGA+AGG | 0.599544 | 4.3:+34467611 | MS.gene057643:CDS |
| GTTTAACAGAAGTGGAGCAA+GGG | 0.616121 | 4.3:+34468421 | MS.gene057643:intron |
| AACATGGTGCTGTTTGATCA+GGG | 0.617310 | 4.3:+34468466 | MS.gene057643:CDS |
| TCCAAGCCAGCCAAATCTGG+CGG | 0.632166 | 4.3:+34467591 | MS.gene057643:CDS |
| AGATTAATGGATCACTTGCA+AGG | 0.633639 | 4.3:+34469782 | MS.gene057643:intron |
| AAGTCAGCAGATTTACACCA+GGG | 0.688410 | 4.3:+34469861 | MS.gene057643:CDS |
| TTAATGGATCACTTGCAAGG+AGG | 0.700095 | 4.3:+34469785 | MS.gene057643:CDS |
| CACCAGGGCTACAAACACCT+AGG | 0.701247 | 4.3:+34469876 | MS.gene057643:CDS |
| AAAGGAGAAAGTGAACAACA+TGG | 0.737054 | 4.3:+34468450 | MS.gene057643:CDS |
| TTACCCTCAAACGATCAGAG+AGG | 0.790654 | 4.3:-34468546 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTGATGAATTAAATTT+TGG | - | chr4.3:34469738-34469757 | None:intergenic | 10.0% |
| !!! | TTTAATTTTTAAATTAGCAT+TGG | - | chr4.3:34468339-34468358 | None:intergenic | 10.0% |
| !! | ATAAACAATTAAATCTAAAC+AGG | - | chr4.3:34467755-34467774 | None:intergenic | 15.0% |
| !!! | TTTTGTATAATCTATTTCTA+AGG | - | chr4.3:34468193-34468212 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACTTTACCACA+CGG | - | chr4.3:34468243-34468262 | None:intergenic | 20.0% |
| !! | AAACTAGTAATGAAAATCAT+AGG | - | chr4.3:34468891-34468910 | None:intergenic | 20.0% |
| !! | ACTAAATATTTGTGACTAAA+AGG | + | chr4.3:34469699-34469718 | MS.gene057643:intron | 20.0% |
| !! | CTAAATATTTGTGACTAAAA+GGG | + | chr4.3:34469700-34469719 | MS.gene057643:intron | 20.0% |
| !! | TAAGTACAAGAAAAGTTAAA+AGG | - | chr4.3:34467648-34467667 | None:intergenic | 20.0% |
| !!! | AAGATAATAACTGCAATTTT+CGG | - | chr4.3:34469317-34469336 | None:intergenic | 20.0% |
| !!! | AATAATGAATATGTCTTTTG+TGG | + | chr4.3:34469752-34469771 | MS.gene057643:intron | 20.0% |
| !!! | AATTTAATTTTTGGCCTTTT+TGG | + | chr4.3:34467876-34467895 | MS.gene057643:intron | 20.0% |
| !!! | ACACAAATTTAAGTTGATAA+TGG | + | chr4.3:34469372-34469391 | MS.gene057643:intron | 20.0% |
| !!! | TGATTTGTTAGTGATATTAA+GGG | + | chr4.3:34468387-34468406 | MS.gene057643:intron | 20.0% |
| ! | AAAAAGCTGTTAATCCAAAA+AGG | - | chr4.3:34467893-34467912 | None:intergenic | 25.0% |
| ! | AAATGAACTTAAAATGCACA+AGG | - | chr4.3:34469486-34469505 | None:intergenic | 25.0% |
| ! | AATGACAACGATGAAATTTA+AGG | - | chr4.3:34469423-34469442 | None:intergenic | 25.0% |
| ! | AATGTCATCATAAAGTAAAG+AGG | + | chr4.3:34469397-34469416 | MS.gene057643:intron | 25.0% |
| ! | AGAAGATGAAATGTTAACTA+GGG | + | chr4.3:34469238-34469257 | MS.gene057643:intron | 25.0% |
| ! | ATGTTAAAAGCTTATGTAAG+TGG | - | chr4.3:34467778-34467797 | None:intergenic | 25.0% |
| ! | CTAAATCACAGAACATATAT+TGG | + | chr4.3:34469005-34469024 | MS.gene057643:intron | 25.0% |
| ! | CTTACACCAAATAATACATT+AGG | - | chr4.3:34469561-34469580 | None:intergenic | 25.0% |
| ! | CTTTAGTTGTAAAAATGTTG+TGG | + | chr4.3:34469588-34469607 | MS.gene057643:intron | 25.0% |
| ! | TCTTGAAGATTCTATTGTTT+AGG | + | chr4.3:34469333-34469352 | MS.gene057643:intron | 25.0% |
| !! | GAAAACAACGAATTTTCAAT+CGG | - | chr4.3:34468317-34468336 | None:intergenic | 25.0% |
| !! | TTTACTAATGCCTTTTCTTA+TGG | + | chr4.3:34468573-34468592 | MS.gene057643:intron | 25.0% |
| !!! | AAATTTTTCAGTCCTAGTAT+TGG | + | chr4.3:34468782-34468801 | MS.gene057643:intron | 25.0% |
| !!! | AGTTGTTTTGTAAGCTATAT+TGG | + | chr4.3:34468028-34468047 | MS.gene057643:intron | 25.0% |
| !!! | GTGATTTGTTAGTGATATTA+AGG | + | chr4.3:34468386-34468405 | MS.gene057643:intron | 25.0% |
| !!! | GTTCATTTTTTTGCAATCTT+AGG | + | chr4.3:34469498-34469517 | MS.gene057643:intron | 25.0% |
| !!! | TTTTTTGTGTTTAACAGAAG+TGG | + | chr4.3:34468413-34468432 | MS.gene057643:intron | 25.0% |
| AAACTAATTCCACCAATACT+AGG | - | chr4.3:34468797-34468816 | None:intergenic | 30.0% | |
| AAATCATAGGTTCAATACAG+TGG | - | chr4.3:34468878-34468897 | None:intergenic | 30.0% | |
| AGAACATTAAGGCTAAAAAG+TGG | - | chr4.3:34468920-34468939 | None:intergenic | 30.0% | |
| ATATTAAACAGACCAAAACG+CGG | - | chr4.3:34468945-34468964 | None:intergenic | 30.0% | |
| ATGAATTACAGAGATGAGTA+TGG | - | chr4.3:34467532-34467551 | None:intergenic | 30.0% | |
| CTAGGACTGAAAAATTTAGA+TGG | - | chr4.3:34468779-34468798 | None:intergenic | 30.0% | |
| GAGAAGATGAAATGTTAACT+AGG | + | chr4.3:34469237-34469256 | MS.gene057643:intron | 30.0% | |
| GTTTGGCCTAATGTATTATT+TGG | + | chr4.3:34469552-34469571 | MS.gene057643:intron | 30.0% | |
| TCTAACAAAACTTATGCAAG+TGG | + | chr4.3:34468124-34468143 | MS.gene057643:intron | 30.0% | |
| TTAAGAGATGCTCATTTCTA+GGG | + | chr4.3:34469069-34469088 | MS.gene057643:intron | 30.0% | |
| TTATACCACACCATAAGAAA+AGG | - | chr4.3:34468586-34468605 | None:intergenic | 30.0% | |
| TTTAAGAGATGCTCATTTCT+AGG | + | chr4.3:34469068-34469087 | MS.gene057643:intron | 30.0% | |
| ! | ATGTTTTCACAAAGTAACTG+AGG | - | chr4.3:34469130-34469149 | None:intergenic | 30.0% |
| ! | CTCCTGTGAATGAATTTTAT+GGG | + | chr4.3:34467729-34467748 | MS.gene057643:intron | 30.0% |
| ! | TCTGGACTTGTTTATAAGTT+TGG | + | chr4.3:34469535-34469554 | MS.gene057643:intron | 30.0% |
| !! | TTTCTAGGGCAATATGTATT+TGG | + | chr4.3:34469083-34469102 | MS.gene057643:intron | 30.0% |
| !!! | CTCTGTAATTCATTTTTTGC+AGG | + | chr4.3:34467539-34467558 | MS.gene057643:intron | 30.0% |
| AAAACGCGGATAGAACATTA+AGG | - | chr4.3:34468931-34468950 | None:intergenic | 35.0% | |
| AAAATGATGAGCATCAGGAT+AGG | - | chr4.3:34468730-34468749 | None:intergenic | 35.0% | |
| AAACATCACTGTAAATGCAG+AGG | - | chr4.3:34469450-34469469 | None:intergenic | 35.0% | |
| AAAGGAGAAAGTGAACAACA+TGG | + | chr4.3:34468450-34468469 | MS.gene057643:CDS | 35.0% | |
| CAAAAGATTAAGCGCATGTT+TGG | - | chr4.3:34468170-34468189 | None:intergenic | 35.0% | |
| CTTGAAAAATGATGAGCATC+AGG | - | chr4.3:34468735-34468754 | None:intergenic | 35.0% | |
| GCCATTTAGCACAAAAATTC+TGG | - | chr4.3:34468986-34469005 | None:intergenic | 35.0% | |
| GTATGCGTGCATTATTATGT+TGG | + | chr4.3:34468629-34468648 | MS.gene057643:intron | 35.0% | |
| TGATGGCTAAAGGTTTAATC+AGG | + | chr4.3:34469821-34469840 | MS.gene057643:CDS | 35.0% | |
| TTCAGTTAAGAGCTTGTCAT+AGG | - | chr4.3:34468494-34468513 | None:intergenic | 35.0% | |
| TTGTGGTCTATGCAGATTAA+TGG | + | chr4.3:34469769-34469788 | MS.gene057643:intron | 35.0% | |
| ! | AACTGCAATTTTCGGAAACA+GGG | - | chr4.3:34469309-34469328 | None:intergenic | 35.0% |
| ! | AGATTAATGGATCACTTGCA+AGG | + | chr4.3:34469782-34469801 | MS.gene057643:intron | 35.0% |
| ! | ATAAGAGACTTGATGGCTAA+AGG | + | chr4.3:34469811-34469830 | MS.gene057643:CDS | 35.0% |
| ! | ATTTTCGGAAACAGGGAAAA+TGG | - | chr4.3:34469302-34469321 | None:intergenic | 35.0% |
| ! | CTCTTGTATTGTTGTTCAAG+TGG | + | chr4.3:34468831-34468850 | MS.gene057643:intron | 35.0% |
| ! | GCCAGAATTTTTGTGCTAAA+TGG | + | chr4.3:34468982-34469001 | MS.gene057643:intron | 35.0% |
| ! | GCTCCTGTGAATGAATTTTA+TGG | + | chr4.3:34467728-34467747 | MS.gene057643:intron | 35.0% |
| ! | GGCTTTTTGAACAATCTCTT+TGG | + | chr4.3:34468288-34468307 | MS.gene057643:intron | 35.0% |
| ! | TAACTGCAATTTTCGGAAAC+AGG | - | chr4.3:34469310-34469329 | None:intergenic | 35.0% |
| ! | TAATGCCTTTTCTTATGGTG+TGG | + | chr4.3:34468578-34468597 | MS.gene057643:intron | 35.0% |
| ! | TTAATGTTCTATCCGCGTTT+TGG | + | chr4.3:34468930-34468949 | MS.gene057643:intron | 35.0% |
| ! | TTTTGGCAAAATGATTGCTC+TGG | + | chr4.3:34468267-34468286 | MS.gene057643:intron | 35.0% |
| !! | TAGGTGTCATTCTAAGTTTC+TGG | + | chr4.3:34469517-34469536 | MS.gene057643:intron | 35.0% |
| !! | TTTTTCAGTCCTAGTATTGG+TGG | + | chr4.3:34468785-34468804 | MS.gene057643:intron | 35.0% |
| AACTTTACCACACGGCATTA+AGG | - | chr4.3:34468235-34468254 | None:intergenic | 40.0% | |
| AAGTCAGCAGATTTACACCA+GGG | + | chr4.3:34469861-34469880 | MS.gene057643:CDS | 40.0% | |
| AGGAGTGATGAGCTTGTATT+TGG | - | chr4.3:34468521-34468540 | None:intergenic | 40.0% | |
| CTAGGGCAATATGTATTTGG+AGG | + | chr4.3:34469086-34469105 | MS.gene057643:intron | 40.0% | |
| GGAGTGATGAGCTTGTATTT+GGG | - | chr4.3:34468520-34468539 | None:intergenic | 40.0% | |
| GGCCCATAAAATTCATTCAC+AGG | - | chr4.3:34467734-34467753 | None:intergenic | 40.0% | |
| GGCTAAAGGTTTAATCAGGT+TGG | + | chr4.3:34469825-34469844 | MS.gene057643:CDS | 40.0% | |
| GTTTAACAGAAGTGGAGCAA+GGG | + | chr4.3:34468421-34468440 | MS.gene057643:intron | 40.0% | |
| TGTTTAACAGAAGTGGAGCA+AGG | + | chr4.3:34468420-34468439 | MS.gene057643:intron | 40.0% | |
| TTATCTTCCTTAATGCCGTG+TGG | + | chr4.3:34468225-34468244 | MS.gene057643:intron | 40.0% | |
| ! | GGCTCGTATTTTCTGATAAG+TGG | + | chr4.3:34468852-34468871 | MS.gene057643:intron | 40.0% |
| ! | TAATGGATCACTTGCAAGGA+GGG | + | chr4.3:34469786-34469805 | MS.gene057643:CDS | 40.0% |
| ! | TTAATGGATCACTTGCAAGG+AGG | + | chr4.3:34469785-34469804 | MS.gene057643:CDS | 40.0% |
| !! | AACATGGTGCTGTTTGATCA+GGG | + | chr4.3:34468466-34468485 | MS.gene057643:CDS | 40.0% |
| !! | GGAGGTGTTTCTGAGAATAT+AGG | + | chr4.3:34469104-34469123 | MS.gene057643:intron | 40.0% |
| AAACGATCAGAGAGGACAGA+AGG | - | chr4.3:34468541-34468560 | None:intergenic | 45.0% | |
| CAAGTCAGCAGATTTACACC+AGG | + | chr4.3:34469860-34469879 | MS.gene057643:CDS | 45.0% | |
| CATCACTGTAAATGCAGAGG+TGG | - | chr4.3:34469447-34469466 | None:intergenic | 45.0% | |
| GAGGGCTATAAGAGACTTGA+TGG | + | chr4.3:34469804-34469823 | MS.gene057643:CDS | 45.0% | |
| TCTAGTGTGATGCACACCTT+TGG | + | chr4.3:34469643-34469662 | MS.gene057643:intron | 45.0% | |
| TGTCCTCTCTGATCGTTTGA+GGG | + | chr4.3:34468543-34468562 | MS.gene057643:CDS | 45.0% | |
| TTACCCTCAAACGATCAGAG+AGG | - | chr4.3:34468549-34468568 | None:intergenic | 45.0% | |
| ! | GTGAAAGTGCAAGCAACCAA+AGG | - | chr4.3:34469662-34469681 | None:intergenic | 45.0% |
| !! | CAACATGGTGCTGTTTGATC+AGG | + | chr4.3:34468465-34468484 | MS.gene057643:CDS | 45.0% |
| !!! | TTTTTTGCAGGCACCCAAGA+AGG | + | chr4.3:34467551-34467570 | MS.gene057643:intron | 45.0% |
| !!! | AAACAATTAAATTTAATTTT+TGG | + | chr4.3:34467867-34467886 | MS.gene057643:intron | 5.0% |
| !!! | AAGTTTTTTTTTTTTTTTTT+TGG | + | chr4.3:34468250-34468269 | MS.gene057643:intron | 5.0% |
| CGGTGGCAAACAGAAGAAGA+AGG | + | chr4.3:34467611-34467630 | MS.gene057643:CDS | 50.0% | |
| CTGTCCTCTCTGATCGTTTG+AGG | + | chr4.3:34468542-34468561 | MS.gene057643:CDS | 50.0% | |
| GTGGAGCAAGGGAAAGCAAA+AGG | + | chr4.3:34468432-34468451 | MS.gene057643:CDS | 50.0% | |
| CTGTTTGCCACCGCCAGATT+TGG | - | chr4.3:34467604-34467623 | None:intergenic | 55.0% | |
| TCCAAGCCAGCCAAATCTGG+CGG | + | chr4.3:34467591-34467610 | MS.gene057643:CDS | 55.0% | |
| TCCTCCAAGCCAGCCAAATC+TGG | + | chr4.3:34467588-34467607 | MS.gene057643:CDS | 55.0% | |
| !! | GATTTGGCTGGCTTGGAGGA+AGG | - | chr4.3:34467588-34467607 | None:intergenic | 55.0% |
| AAGCCAGCCAAATCTGGCGG+TGG | + | chr4.3:34467594-34467613 | MS.gene057643:CDS | 60.0% | |
| AGGAGGAGGAGCTGCCTTCT+TGG | - | chr4.3:34467568-34467587 | None:intergenic | 60.0% | |
| GGAGGAGGAGCTGCCTTCTT+GGG | - | chr4.3:34467567-34467586 | None:intergenic | 60.0% | |
| TTGCCACCGCCAGATTTGGC+TGG | - | chr4.3:34467600-34467619 | None:intergenic | 60.0% | |
| ! | ACCGCCAGATTTGGCTGGCT+TGG | - | chr4.3:34467595-34467614 | None:intergenic | 60.0% |
| !! | GCCAGATTTGGCTGGCTTGG+AGG | - | chr4.3:34467592-34467611 | None:intergenic | 60.0% |
| !! | TTGGCTGGCTTGGAGGAAGG+AGG | - | chr4.3:34467585-34467604 | None:intergenic | 60.0% |
| !! | GCTGGCTTGGAGGAAGGAGG+AGG | - | chr4.3:34467582-34467601 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 34467476 | 34469897 | 34467476 | ID=MS.gene057643 |
| chr4.3 | mRNA | 34467476 | 34469897 | 34467476 | ID=MS.gene057643.t1;Parent=MS.gene057643 |
| chr4.3 | exon | 34467476 | 34467478 | 34467476 | ID=MS.gene057643.t1.exon1;Parent=MS.gene057643.t1 |
| chr4.3 | CDS | 34467476 | 34467478 | 34467476 | ID=cds.MS.gene057643.t1;Parent=MS.gene057643.t1 |
| chr4.3 | exon | 34467561 | 34467632 | 34467561 | ID=MS.gene057643.t1.exon2;Parent=MS.gene057643.t1 |
| chr4.3 | CDS | 34467561 | 34467632 | 34467561 | ID=cds.MS.gene057643.t1;Parent=MS.gene057643.t1 |
| chr4.3 | exon | 34468430 | 34468564 | 34468430 | ID=MS.gene057643.t1.exon3;Parent=MS.gene057643.t1 |
| chr4.3 | CDS | 34468430 | 34468564 | 34468430 | ID=cds.MS.gene057643.t1;Parent=MS.gene057643.t1 |
| chr4.3 | exon | 34469784 | 34469897 | 34469784 | ID=MS.gene057643.t1.exon4;Parent=MS.gene057643.t1 |
| chr4.3 | CDS | 34469784 | 34469897 | 34469784 | ID=cds.MS.gene057643.t1;Parent=MS.gene057643.t1 |
| Gene Sequence |
| Protein sequence |
