Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053224.t1 | XP_003604229.1 | 98.6 | 144 | 2 | 0 | 1 | 144 | 1 | 144 | 2.50E-73 | 284.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053224.t1 | Q9XHS0 | 71.5 | 144 | 40 | 1 | 1 | 144 | 1 | 143 | 2.1e-52 | 206.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053224.t1 | G7JDB2 | 98.6 | 144 | 2 | 0 | 1 | 144 | 1 | 144 | 1.8e-73 | 284.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene053224 | 0.80084 | 1.19E-48 | -1.69E-46 |
| MS.gene049387 | MS.gene053224 | 0.8122 | 4.78E-51 | -1.69E-46 |
| MS.gene050134 | MS.gene053224 | 0.926658 | 3.46E-91 | -1.69E-46 |
| MS.gene050252 | MS.gene053224 | 0.800814 | 1.21E-48 | -1.69E-46 |
| MS.gene050791 | MS.gene053224 | 0.891314 | 4.45E-74 | -1.69E-46 |
| MS.gene050912 | MS.gene053224 | 0.851296 | 9.74E-61 | -1.69E-46 |
| MS.gene051904 | MS.gene053224 | 0.850223 | 1.95E-60 | -1.69E-46 |
| MS.gene051984 | MS.gene053224 | 0.861655 | 8.81E-64 | -1.69E-46 |
| MS.gene052664 | MS.gene053224 | 0.904299 | 1.42E-79 | -1.69E-46 |
| MS.gene052666 | MS.gene053224 | 0.838947 | 2.12E-57 | -1.69E-46 |
| MS.gene053224 | MS.gene055232 | 0.816776 | 4.65E-52 | -1.69E-46 |
| MS.gene053224 | MS.gene057165 | 0.80141 | 9.12E-49 | -1.69E-46 |
| MS.gene053224 | MS.gene057272 | 0.896853 | 2.48E-76 | -1.69E-46 |
| MS.gene053224 | MS.gene057641 | 0.856922 | 2.32E-62 | -1.69E-46 |
| MS.gene053224 | MS.gene057643 | 0.889699 | 1.92E-73 | -1.69E-46 |
| MS.gene053224 | MS.gene057988 | 0.813592 | 2.37E-51 | -1.69E-46 |
| MS.gene053224 | MS.gene059340 | 0.812675 | 3.76E-51 | -1.69E-46 |
| MS.gene053224 | MS.gene060432 | 0.803735 | 3.02E-49 | -1.69E-46 |
| MS.gene053224 | MS.gene060483 | 0.855344 | 6.72E-62 | -1.69E-46 |
| MS.gene053224 | MS.gene06169 | 0.849283 | 3.57E-60 | -1.69E-46 |
| MS.gene053224 | MS.gene063093 | 0.841858 | 3.68E-58 | -1.69E-46 |
| MS.gene053224 | MS.gene06581 | 0.843466 | 1.38E-58 | -1.69E-46 |
| MS.gene053224 | MS.gene06583 | 0.857626 | 1.44E-62 | -1.69E-46 |
| MS.gene053224 | MS.gene06617 | 0.829805 | 4.19E-55 | -1.69E-46 |
| MS.gene053224 | MS.gene066583 | 0.804813 | 1.80E-49 | -1.69E-46 |
| MS.gene053224 | MS.gene066811 | 0.840986 | 6.25E-58 | -1.69E-46 |
| MS.gene053224 | MS.gene067141 | 0.8152 | 1.04E-51 | -1.69E-46 |
| MS.gene053224 | MS.gene067331 | 0.868228 | 7.63E-66 | -1.69E-46 |
| MS.gene053224 | MS.gene06803 | 0.884059 | 2.65E-71 | -1.69E-46 |
| MS.gene053224 | MS.gene06833 | 0.830224 | 3.31E-55 | -1.69E-46 |
| MS.gene053224 | MS.gene07018 | 0.843618 | 1.25E-58 | -1.69E-46 |
| MS.gene053224 | MS.gene070946 | 0.867375 | 1.43E-65 | -1.69E-46 |
| MS.gene053224 | MS.gene072093 | 0.836397 | 9.59E-57 | -1.69E-46 |
| MS.gene053224 | MS.gene07244 | 0.820287 | 7.43E-53 | -1.69E-46 |
| MS.gene053224 | MS.gene072503 | 0.854015 | 1.63E-61 | -1.69E-46 |
| MS.gene053224 | MS.gene072589 | 0.889706 | 1.91E-73 | -1.69E-46 |
| MS.gene053224 | MS.gene072591 | 0.874003 | 9.48E-68 | -1.69E-46 |
| MS.gene053224 | MS.gene073358 | 0.80836 | 3.22E-50 | -1.69E-46 |
| MS.gene053224 | MS.gene074400 | 0.842405 | 2.64E-58 | -1.69E-46 |
| MS.gene053224 | MS.gene08521 | 0.887049 | 2.01E-72 | -1.69E-46 |
| MS.gene053224 | MS.gene08869 | 0.859665 | 3.53E-63 | -1.69E-46 |
| MS.gene053224 | MS.gene08870 | 0.914388 | 2.03E-84 | -1.69E-46 |
| MS.gene053224 | MS.gene08871 | 0.924276 | 8.74E-90 | -1.69E-46 |
| MS.gene053224 | MS.gene09038 | 0.840206 | 1.00E-57 | -1.69E-46 |
| MS.gene053224 | MS.gene09204 | 0.843558 | 1.30E-58 | -1.69E-46 |
| MS.gene053224 | MS.gene09761 | 0.888595 | 5.14E-73 | -1.69E-46 |
| MS.gene053224 | MS.gene09762 | 0.843415 | 1.42E-58 | -1.69E-46 |
| MS.gene053224 | MS.gene09779 | 0.891791 | 2.88E-74 | -1.69E-46 |
| MS.gene053224 | MS.gene09780 | 0.87766 | 5.26E-69 | -1.69E-46 |
| MS.gene053224 | MS.gene20153 | 0.884058 | 2.65E-71 | -1.69E-46 |
| MS.gene053224 | MS.gene20766 | 0.859661 | 3.54E-63 | -1.69E-46 |
| MS.gene053224 | MS.gene22507 | 0.830369 | 3.05E-55 | -1.69E-46 |
| MS.gene053224 | MS.gene22784 | 0.879086 | 1.66E-69 | -1.69E-46 |
| MS.gene053224 | MS.gene22957 | 0.815435 | 9.26E-52 | -1.69E-46 |
| MS.gene053224 | MS.gene23031 | 0.857156 | 1.98E-62 | -1.69E-46 |
| MS.gene053224 | MS.gene23303 | 0.853189 | 2.82E-61 | -1.69E-46 |
| MS.gene053224 | MS.gene23317 | 0.813587 | 2.37E-51 | -1.69E-46 |
| MS.gene053224 | MS.gene23437 | 0.816435 | 5.54E-52 | -1.69E-46 |
| MS.gene053224 | MS.gene24232 | 0.869345 | 3.32E-66 | -1.69E-46 |
| MS.gene053224 | MS.gene24639 | 0.857152 | 1.98E-62 | -1.69E-46 |
| MS.gene053224 | MS.gene25236 | 0.858822 | 6.33E-63 | -1.69E-46 |
| MS.gene053224 | MS.gene25238 | 0.836938 | 6.98E-57 | -1.69E-46 |
| MS.gene053224 | MS.gene25639 | 0.858635 | 7.20E-63 | -1.69E-46 |
| MS.gene053224 | MS.gene25903 | 0.904924 | 7.38E-80 | -1.69E-46 |
| MS.gene053224 | MS.gene26343 | 0.821236 | 4.49E-53 | -1.69E-46 |
| MS.gene053224 | MS.gene26620 | 0.811183 | 7.95E-51 | -1.69E-46 |
| MS.gene053224 | MS.gene26707 | 0.885373 | 8.60E-72 | -1.69E-46 |
| MS.gene053224 | MS.gene27003 | 0.81815 | 2.28E-52 | -1.69E-46 |
| MS.gene053224 | MS.gene27265 | 0.875039 | 4.22E-68 | -1.69E-46 |
| MS.gene053224 | MS.gene28147 | 0.883644 | 3.77E-71 | -1.69E-46 |
| MS.gene053224 | MS.gene31039 | 0.815272 | 1.01E-51 | -1.69E-46 |
| MS.gene053224 | MS.gene31991 | 0.839767 | 1.30E-57 | -1.69E-46 |
| MS.gene053224 | MS.gene32591 | 0.853218 | 2.76E-61 | -1.69E-46 |
| MS.gene053224 | MS.gene34372 | 0.90439 | 1.29E-79 | -1.69E-46 |
| MS.gene053224 | MS.gene37037 | 0.811707 | 6.12E-51 | -1.69E-46 |
| MS.gene053224 | MS.gene38035 | 0.860195 | 2.45E-63 | -1.69E-46 |
| MS.gene053224 | MS.gene38222 | 0.85634 | 3.44E-62 | -1.69E-46 |
| MS.gene053224 | MS.gene38735 | 0.819218 | 1.30E-52 | -1.69E-46 |
| MS.gene053224 | MS.gene39902 | 0.818993 | 1.47E-52 | -1.69E-46 |
| MS.gene053224 | MS.gene40831 | 0.827132 | 1.85E-54 | -1.69E-46 |
| MS.gene053224 | MS.gene41726 | 0.820533 | 6.52E-53 | -1.69E-46 |
| MS.gene053224 | MS.gene43070 | 0.83748 | 5.07E-57 | -1.69E-46 |
| MS.gene053224 | MS.gene43071 | 0.85095 | 1.22E-60 | -1.69E-46 |
| MS.gene053224 | MS.gene46387 | 0.853402 | 2.45E-61 | -1.69E-46 |
| MS.gene053224 | MS.gene46907 | 0.816981 | 4.18E-52 | -1.69E-46 |
| MS.gene053224 | MS.gene48986 | 0.800272 | 1.56E-48 | -1.69E-46 |
| MS.gene053224 | MS.gene50269 | 0.848064 | 7.78E-60 | -1.69E-46 |
| MS.gene053224 | MS.gene50640 | 0.887562 | 1.28E-72 | -1.69E-46 |
| MS.gene053224 | MS.gene50756 | 0.891561 | 3.55E-74 | -1.69E-46 |
| MS.gene053224 | MS.gene50758 | 0.877406 | 6.45E-69 | -1.69E-46 |
| MS.gene053224 | MS.gene50921 | 0.822914 | 1.84E-53 | -1.69E-46 |
| MS.gene053224 | MS.gene50925 | 0.818569 | 1.83E-52 | -1.69E-46 |
| MS.gene053224 | MS.gene51534 | 0.801037 | 1.09E-48 | -1.69E-46 |
| MS.gene053224 | MS.gene55619 | 0.894081 | 3.45E-75 | -1.69E-46 |
| MS.gene053224 | MS.gene55890 | 0.93745 | 3.40E-98 | -1.69E-46 |
| MS.gene053224 | MS.gene56126 | 0.801207 | 1.00E-48 | -1.69E-46 |
| MS.gene053224 | MS.gene58173 | 0.802515 | 5.41E-49 | -1.69E-46 |
| MS.gene053224 | MS.gene59228 | 0.872406 | 3.26E-67 | -1.69E-46 |
| MS.gene053224 | MS.gene59230 | 0.876573 | 1.25E-68 | -1.69E-46 |
| MS.gene053224 | MS.gene59609 | 0.85416 | 1.48E-61 | -1.69E-46 |
| MS.gene053224 | MS.gene60693 | 0.8527 | 3.89E-61 | -1.69E-46 |
| MS.gene053224 | MS.gene61251 | 0.832187 | 1.09E-55 | -1.69E-46 |
| MS.gene053224 | MS.gene62561 | 0.8274 | 1.60E-54 | -1.69E-46 |
| MS.gene053224 | MS.gene62620 | 0.817963 | 2.51E-52 | -1.69E-46 |
| MS.gene053224 | MS.gene62683 | 0.823861 | 1.10E-53 | -1.69E-46 |
| MS.gene053224 | MS.gene62695 | 0.818223 | 2.19E-52 | -1.69E-46 |
| MS.gene053224 | MS.gene62791 | 0.886745 | 2.62E-72 | -1.69E-46 |
| MS.gene053224 | MS.gene63973 | 0.812513 | 4.08E-51 | -1.69E-46 |
| MS.gene053224 | MS.gene68740 | 0.816318 | 5.88E-52 | -1.69E-46 |
| MS.gene053224 | MS.gene68832 | 0.802491 | 5.47E-49 | -1.69E-46 |
| MS.gene053224 | MS.gene70316 | 0.885286 | 9.27E-72 | -1.69E-46 |
| MS.gene053224 | MS.gene70579 | 0.896243 | 4.45E-76 | -1.69E-46 |
| MS.gene053224 | MS.gene72382 | 0.86772 | 1.11E-65 | -1.69E-46 |
| MS.gene053224 | MS.gene73000 | 0.881321 | 2.64E-70 | -1.69E-46 |
| MS.gene053224 | MS.gene73833 | 0.810325 | 1.22E-50 | -1.69E-46 |
| MS.gene053224 | MS.gene74837 | 0.808175 | 3.52E-50 | -1.69E-46 |
| MS.gene053224 | MS.gene76031 | 0.837194 | 6.00E-57 | -1.69E-46 |
| MS.gene053224 | MS.gene76493 | 0.805838 | 1.10E-49 | -1.69E-46 |
| MS.gene053224 | MS.gene79721 | 0.889034 | 3.47E-73 | -1.69E-46 |
| MS.gene053224 | MS.gene81099 | 0.845203 | 4.70E-59 | -1.69E-46 |
| MS.gene053224 | MS.gene82009 | 0.826777 | 2.25E-54 | -1.69E-46 |
| MS.gene053224 | MS.gene82038 | 0.866499 | 2.73E-65 | -1.69E-46 |
| MS.gene053224 | MS.gene82489 | 0.807352 | 5.27E-50 | -1.69E-46 |
| MS.gene053224 | MS.gene82545 | 0.87153 | 6.37E-67 | -1.69E-46 |
| MS.gene053224 | MS.gene87325 | 0.80479 | 1.82E-49 | -1.69E-46 |
| MS.gene053224 | MS.gene88918 | 0.856899 | 2.35E-62 | -1.69E-46 |
| MS.gene053224 | MS.gene90945 | 0.847769 | 9.37E-60 | -1.69E-46 |
| MS.gene053224 | MS.gene92142 | 0.832802 | 7.68E-56 | -1.69E-46 |
| MS.gene053224 | MS.gene95803 | 0.846404 | 2.22E-59 | -1.69E-46 |
| MS.gene053224 | MS.gene96225 | 0.92458 | 5.83E-90 | -1.69E-46 |
| MS.gene053224 | MS.gene96825 | 0.874881 | 4.78E-68 | -1.69E-46 |
| MS.gene053224 | MS.gene98171 | 0.878739 | 2.20E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053224 | MS.gene025830 | PPI |
| MS.gene09779 | MS.gene053224 | PPI |
| MS.gene03201 | MS.gene053224 | PPI |
| MS.gene28384 | MS.gene053224 | PPI |
| MS.gene053224 | MS.gene053443 | PPI |
| MS.gene02807 | MS.gene053224 | PPI |
| MS.gene57391 | MS.gene053224 | PPI |
| MS.gene053224 | MS.gene034249 | PPI |
| MS.gene09780 | MS.gene053224 | PPI |
| MS.gene013786 | MS.gene053224 | PPI |
| MS.gene09762 | MS.gene053224 | PPI |
| MS.gene053224 | MS.gene073888 | PPI |
| MS.gene02572 | MS.gene053224 | PPI |
| MS.gene46264 | MS.gene053224 | PPI |
| MS.gene015411 | MS.gene053224 | PPI |
| MS.gene030614 | MS.gene053224 | PPI |
| MS.gene65180 | MS.gene053224 | PPI |
| MS.gene70215 | MS.gene053224 | PPI |
| MS.gene53517 | MS.gene053224 | PPI |
| MS.gene000610 | MS.gene053224 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053224.t1 | MTR_4g006830 | 98.611 | 144 | 2 | 0 | 1 | 144 | 1 | 144 | 1.41e-101 | 287 |
| MS.gene053224.t1 | MTR_5g012890 | 95.200 | 125 | 6 | 0 | 20 | 144 | 18 | 142 | 8.57e-85 | 244 |
| MS.gene053224.t1 | MTR_8g093770 | 91.270 | 126 | 11 | 0 | 19 | 144 | 18 | 143 | 1.09e-82 | 239 |
| MS.gene053224.t1 | MTR_5g012890 | 90.000 | 90 | 9 | 0 | 20 | 109 | 18 | 107 | 6.59e-55 | 168 |
| MS.gene053224.t1 | MTR_4g073510 | 75.926 | 54 | 13 | 0 | 1 | 54 | 1 | 54 | 1.28e-20 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053224.t1 | AT2G32060 | 72.000 | 125 | 34 | 1 | 20 | 144 | 21 | 144 | 9.94e-64 | 191 |
| MS.gene053224.t1 | AT2G32060 | 72.000 | 125 | 34 | 1 | 20 | 144 | 21 | 144 | 9.94e-64 | 191 |
| MS.gene053224.t1 | AT2G32060 | 72.000 | 125 | 34 | 1 | 20 | 144 | 21 | 144 | 9.94e-64 | 191 |
| MS.gene053224.t1 | AT1G15930 | 73.600 | 125 | 32 | 1 | 20 | 144 | 21 | 144 | 9.39e-63 | 189 |
| MS.gene053224.t1 | AT1G15930 | 73.600 | 125 | 32 | 1 | 20 | 144 | 21 | 144 | 9.39e-63 | 189 |
Find 40 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGCCGTGGTCAGGATTT+TGG | 0.169284 | 4.2:-92790504 | MS.gene053224:intron |
| CCTGTTGCCGCCCCTGCTGC+TGG | 0.273301 | 4.2:-92791306 | MS.gene053224:CDS |
| GCCCCTGCTGCTGGAATTCC+AGG | 0.275871 | 4.2:-92791297 | MS.gene053224:CDS |
| CCAGCAGCAGGGGCGGCAAC+AGG | 0.352403 | 4.2:+92791306 | None:intergenic |
| TCGCCTGGAATTCCAGCAGC+AGG | 0.403859 | 4.2:+92791294 | None:intergenic |
| ATGATATCCATTGGCTCGCC+TGG | 0.406108 | 4.2:+92791279 | None:intergenic |
| TGCGAAGACACTTGGAGAAT+GGG | 0.446345 | 4.2:-92791058 | MS.gene053224:CDS |
| TTGACGAGTTTAACATAGTC+AGG | 0.447855 | 4.2:+92791126 | None:intergenic |
| GTGCGAAGACACTTGGAGAA+TGG | 0.457537 | 4.2:-92791059 | MS.gene053224:CDS |
| AAATCTACAAGGAAAATGTC+AGG | 0.461137 | 4.2:-92792769 | None:intergenic |
| CTGCTCCTGTGTGGTGGTCA+AGG | 0.470678 | 4.2:-92790599 | MS.gene053224:intron |
| GTGCTGCAGAACAACATTGT+AGG | 0.480720 | 4.2:+92790467 | None:intergenic |
| CTGCCTTGCAACTTGTGCTT+AGG | 0.487542 | 4.2:-92791254 | MS.gene053224:CDS |
| GGAAAAGCTAGGAAGGTAAC+TGG | 0.499679 | 4.2:-92790622 | MS.gene053224:CDS |
| CGCCTGGAATTCCAGCAGCA+GGG | 0.501362 | 4.2:+92791295 | None:intergenic |
| CTTGCACGTGGCCTCCATGA+AGG | 0.502412 | 4.2:-92791210 | MS.gene053224:CDS |
| GTTCCTAGTGCGAAGACACT+TGG | 0.512562 | 4.2:-92791066 | MS.gene053224:CDS |
| TCTCCAAGTGTCTTCGCACT+AGG | 0.516396 | 4.2:+92791063 | None:intergenic |
| CTTAGGAAGTCACTGGCATA+TGG | 0.527492 | 4.2:-92791237 | MS.gene053224:CDS |
| TGGAATTCCAGCAGCAGGGG+CGG | 0.535141 | 4.2:+92791299 | None:intergenic |
| GCCTGGAATTCCAGCAGCAG+GGG | 0.541122 | 4.2:+92791296 | None:intergenic |
| CGAGTTTAACATAGTCAGGC+TGG | 0.546098 | 4.2:+92791130 | None:intergenic |
| AGGAAGTCACTGGCATATGG+TGG | 0.559341 | 4.2:-92791234 | MS.gene053224:CDS |
| AACTGGCTGCTCCTGTGTGG+TGG | 0.564611 | 4.2:-92790605 | MS.gene053224:CDS |
| AAGGCAGTCATGATATCCAT+TGG | 0.578468 | 4.2:+92791270 | None:intergenic |
| ACTTGTGCTTAGGAAGTCAC+TGG | 0.586574 | 4.2:-92791244 | MS.gene053224:CDS |
| CTCCGAGGGAAAAGCTAGGA+AGG | 0.586953 | 4.2:-92790629 | MS.gene053224:CDS |
| TGGAATTCCAGGCGAGCCAA+TGG | 0.589710 | 4.2:-92791286 | MS.gene053224:CDS |
| CTTCCTAAGCACAAGTTGCA+AGG | 0.603957 | 4.2:+92791251 | None:intergenic |
| TGACTATGTTAAACTCGTCA+AGG | 0.611176 | 4.2:-92791124 | MS.gene053224:CDS |
| GCATATGGTGGGCTTGCACG+TGG | 0.612030 | 4.2:-92791222 | MS.gene053224:CDS |
| GGAAGTCACTGGCATATGGT+GGG | 0.612935 | 4.2:-92791233 | MS.gene053224:CDS |
| AAGACACTTGGAGAATGGGC+TGG | 0.622300 | 4.2:-92791054 | MS.gene053224:CDS |
| TTGACTCCGAGGGAAAAGCT+AGG | 0.623449 | 4.2:-92790633 | MS.gene053224:CDS |
| AATCTACAAGGAAAATGTCA+GGG | 0.638387 | 4.2:-92792768 | None:intergenic |
| GGTAACTGGCTGCTCCTGTG+TGG | 0.642490 | 4.2:-92790608 | MS.gene053224:CDS |
| AAAGTAATTGAGAAGAACAC+AGG | 0.649204 | 4.2:-92791183 | MS.gene053224:CDS |
| TTGTGTAAGATTGACTCCGA+GGG | 0.654398 | 4.2:-92790643 | MS.gene053224:CDS |
| GTTGTGTAAGATTGACTCCG+AGG | 0.676451 | 4.2:-92790644 | MS.gene053224:CDS |
| TTATACCTTGACCACCACAC+AGG | 0.686928 | 4.2:+92790594 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTCTAAAAAAAAAATA+TGG | + | chr4.2:92791309-92791328 | None:intergenic | 10.0% |
| !!! | GTTGAATATGAATTTTAATA+CGG | - | chr4.2:92790478-92790497 | MS.gene053224:CDS | 15.0% |
| !!! | TTTGTTGTATTAATTATTGT+TGG | - | chr4.2:92792526-92792545 | MS.gene053224:intron | 15.0% |
| !!! | TTTTGTTTAGTTTATTTGAT+TGG | - | chr4.2:92790564-92790583 | MS.gene053224:intron | 15.0% |
| !! | AGTTCAATTCAAATATAGTT+TGG | + | chr4.2:92792320-92792339 | None:intergenic | 20.0% |
| !! | ATATCCATTAAATTTCAGAA+TGG | + | chr4.2:92792198-92792217 | None:intergenic | 20.0% |
| !!! | AACAATTATGTCATGTTTTA+GGG | + | chr4.2:92791272-92791291 | None:intergenic | 20.0% |
| !!! | AGATATGCTAATTAATTTTG+TGG | + | chr4.2:92792471-92792490 | None:intergenic | 20.0% |
| !!! | ATTTCCATTCTGAAATTTAA+TGG | - | chr4.2:92792191-92792210 | MS.gene053224:intron | 20.0% |
| !!! | CAGAATATTGTTAATTTGAT+TGG | - | chr4.2:92790626-92790645 | MS.gene053224:CDS | 20.0% |
| !!! | GTAAAGAGACATAATTTTAT+TGG | - | chr4.2:92790591-92790610 | MS.gene053224:intron | 20.0% |
| !!! | TATGAATTTTAATACGGATA+TGG | - | chr4.2:92790484-92790503 | MS.gene053224:CDS | 20.0% |
| !!! | TTGCAATTTTTGATATTTGT+GGG | - | chr4.2:92791215-92791234 | MS.gene053224:CDS | 20.0% |
| !!! | TTTTCTTTTCTTTTTTCGAT+TGG | - | chr4.2:92792653-92792672 | MS.gene053224:intron | 20.0% |
| ! | AAAAATAAGCTAATCCATAC+GGG | - | chr4.2:92791046-92791065 | MS.gene053224:intron | 25.0% |
| ! | AACGCATTACAAAAAATGAA+TGG | - | chr4.2:92792370-92792389 | MS.gene053224:intron | 25.0% |
| ! | AATTAACAATATTCTGCAGT+AGG | + | chr4.2:92790622-92790641 | None:intergenic | 25.0% |
| ! | ACCAAAAAAAAACGACATAA+GGG | + | chr4.2:92791089-92791108 | None:intergenic | 25.0% |
| ! | ACGCATTACAAAAAATGAAT+GGG | - | chr4.2:92792371-92792390 | MS.gene053224:intron | 25.0% |
| ! | ATCATTTGTGAAACTGTTTA+TGG | - | chr4.2:92790702-92790721 | MS.gene053224:intron | 25.0% |
| ! | CAAAAATAAGCTAATCCATA+CGG | - | chr4.2:92791045-92791064 | MS.gene053224:intron | 25.0% |
| ! | CAAATTACACAAACAAAAGA+AGG | + | chr4.2:92791740-92791759 | None:intergenic | 25.0% |
| ! | CAAGCAAAATTAAAGAATGA+TGG | - | chr4.2:92792409-92792428 | MS.gene053224:intron | 25.0% |
| ! | GACAATGTATAATATATGCA+AGG | + | chr4.2:92791136-92791155 | None:intergenic | 25.0% |
| ! | TACTTGTTTGTTTATGCATT+GGG | - | chr4.2:92792252-92792271 | MS.gene053224:intron | 25.0% |
| ! | TCATTTGTGAAACTGTTTAT+GGG | - | chr4.2:92790703-92790722 | MS.gene053224:intron | 25.0% |
| ! | TCTAAGTAACAATTCATCTA+TGG | - | chr4.2:92791821-92791840 | MS.gene053224:intron | 25.0% |
| ! | TTACTTGTTTGTTTATGCAT+TGG | - | chr4.2:92792251-92792270 | MS.gene053224:intron | 25.0% |
| !! | AACCATAATATCCAAGTTTT+TGG | + | chr4.2:92791609-92791628 | None:intergenic | 25.0% |
| !! | CAACAATTATGTCATGTTTT+AGG | + | chr4.2:92791273-92791292 | None:intergenic | 25.0% |
| !! | GTTGCAATTTTTGATATTTG+TGG | - | chr4.2:92791214-92791233 | MS.gene053224:CDS | 25.0% |
| !! | TAATTAATTTTGTGGTGTAG+TGG | + | chr4.2:92792463-92792482 | None:intergenic | 25.0% |
| !! | TAATTTGATTGGAGTATTAG+AGG | - | chr4.2:92790637-92790656 | MS.gene053224:CDS | 25.0% |
| !!! | ACAATTATGTCATGTTTTAG+GGG | + | chr4.2:92791271-92791290 | None:intergenic | 25.0% |
| !!! | GGATATTATGGTTATTTTTG+TGG | - | chr4.2:92791616-92791635 | MS.gene053224:intron | 25.0% |
| AAAGTAATTGAGAAGAACAC+AGG | - | chr4.2:92792023-92792042 | MS.gene053224:intron | 30.0% | |
| ATTACAAAAAATGAATGGGC+AGG | - | chr4.2:92792375-92792394 | MS.gene053224:intron | 30.0% | |
| CAAATAAGTCCAATTCAAAC+AGG | + | chr4.2:92790663-92790682 | None:intergenic | 30.0% | |
| CACCAAAAAAAAACGACATA+AGG | + | chr4.2:92791090-92791109 | None:intergenic | 30.0% | |
| CACCAAAAACTTGGATATTA+TGG | - | chr4.2:92791604-92791623 | MS.gene053224:intron | 30.0% | |
| CGCAAATCGCAATATAAAAA+TGG | + | chr4.2:92791518-92791537 | None:intergenic | 30.0% | |
| CTAAGTTGCAATTCTTACAT+GGG | - | chr4.2:92791436-92791455 | MS.gene053224:intron | 30.0% | |
| TAAGAATTGCAACTTAGACA+CGG | + | chr4.2:92791433-92791452 | None:intergenic | 30.0% | |
| TATAATATATGCAAGGTCCA+GGG | + | chr4.2:92791129-92791148 | None:intergenic | 30.0% | |
| TCTAAGTTGCAATTCTTACA+TGG | - | chr4.2:92791435-92791454 | MS.gene053224:intron | 30.0% | |
| TGACATAATTGTTGCAATTG+CGG | - | chr4.2:92791279-92791298 | MS.gene053224:CDS | 30.0% | |
| ! | GTTTTCACTAACAAATAGTC+TGG | + | chr4.2:92790972-92790991 | None:intergenic | 30.0% |
| ! | TTTTGATATTTGTGGGTACA+CGG | - | chr4.2:92791222-92791241 | MS.gene053224:CDS | 30.0% |
| !! | TCTTGTGTGGTTTGTTTATT+TGG | - | chr4.2:92791361-92791380 | MS.gene053224:intron | 30.0% |
| !! | TTTTCATAAACTAGCTTGAC+AGG | + | chr4.2:92790904-92790923 | None:intergenic | 30.0% |
| !!! | ATGGTTATTTTTGTGGTTGT+GGG | - | chr4.2:92791623-92791642 | MS.gene053224:intron | 30.0% |
| !!! | CTTATGTCGTTTTTTTTTGG+TGG | - | chr4.2:92791088-92791107 | MS.gene053224:CDS | 30.0% |
| !!! | TATGGTTATTTTTGTGGTTG+TGG | - | chr4.2:92791622-92791641 | MS.gene053224:intron | 30.0% |
| ACCTGCTAAATAAGCTGTTT+AGG | - | chr4.2:92790812-92790831 | MS.gene053224:intron | 35.0% | |
| AGAAAATGTGGATAAATGGG+GGG | - | chr4.2:92791553-92791572 | MS.gene053224:intron | 35.0% | |
| ATAAGGGCTCTGTTTGAATA+AGG | + | chr4.2:92791073-92791092 | None:intergenic | 35.0% | |
| ATACAGAACAACACAAGACA+CGG | + | chr4.2:92791771-92791790 | None:intergenic | 35.0% | |
| CACATTCAACAGTTAAAACC+AGG | + | chr4.2:92792686-92792705 | None:intergenic | 35.0% | |
| CAGAAAATGTGGATAAATGG+GGG | - | chr4.2:92791552-92791571 | MS.gene053224:intron | 35.0% | |
| CCAGAAAATGTGGATAAATG+GGG | - | chr4.2:92791551-92791570 | MS.gene053224:intron | 35.0% | |
| CCTGCTAAATAAGCTGTTTA+GGG | - | chr4.2:92790813-92790832 | MS.gene053224:intron | 35.0% | |
| GCCAGAAAATGTGGATAAAT+GGG | - | chr4.2:92791550-92791569 | MS.gene053224:intron | 35.0% | |
| GTATAATATATGCAAGGTCC+AGG | + | chr4.2:92791130-92791149 | None:intergenic | 35.0% | |
| TAAGGGCTCTGTTTGAATAA+GGG | + | chr4.2:92791072-92791091 | None:intergenic | 35.0% | |
| TATGCATTGGGATACTTATC+AGG | - | chr4.2:92792264-92792283 | MS.gene053224:intron | 35.0% | |
| TATTAGAGGCCTGTTTGAAT+TGG | - | chr4.2:92790651-92790670 | MS.gene053224:intron | 35.0% | |
| TGACTATGTTAAACTCGTCA+AGG | - | chr4.2:92792082-92792101 | MS.gene053224:intron | 35.0% | |
| TTGACGAGTTTAACATAGTC+AGG | + | chr4.2:92792083-92792102 | None:intergenic | 35.0% | |
| TTGTCATGCAATGACGAAAT+AGG | + | chr4.2:92791682-92791701 | None:intergenic | 35.0% | |
| TTTGATATTTGTGGGTACAC+GGG | - | chr4.2:92791223-92791242 | MS.gene053224:CDS | 35.0% | |
| ! | ACTATTGAAAGCACAAGTTG+TGG | - | chr4.2:92792337-92792356 | MS.gene053224:intron | 35.0% |
| ! | CTTGTGTTGTTCTGTATGTT+TGG | - | chr4.2:92791774-92791793 | MS.gene053224:intron | 35.0% |
| ! | TTAATTTTGTGGTGTAGTGG+TGG | + | chr4.2:92792460-92792479 | None:intergenic | 35.0% |
| ! | TTCTCTGTTCAGGACATTTT+TGG | - | chr4.2:92791460-92791479 | MS.gene053224:intron | 35.0% |
| !! | CAATTACTTTTGCACCTTCA+TGG | + | chr4.2:92792013-92792032 | None:intergenic | 35.0% |
| !! | GATATTTTTGCTATGCAGTG+AGG | - | chr4.2:92791857-92791876 | MS.gene053224:intron | 35.0% |
| !!! | ATGTCGTTTTTTTTTGGTGG+TGG | - | chr4.2:92791091-92791110 | MS.gene053224:CDS | 35.0% |
| !!! | CTGGTTTTAACTGTTGAATG+TGG | - | chr4.2:92792684-92792703 | MS.gene053224:intron | 35.0% |
| !!! | GCCCTTATGTCGTTTTTTTT+TGG | - | chr4.2:92791085-92791104 | MS.gene053224:CDS | 35.0% |
| AAGGCAGTCATGATATCCAT+TGG | + | chr4.2:92791939-92791958 | None:intergenic | 40.0% | |
| CCCTAAACAGCTTATTTAGC+AGG | + | chr4.2:92790816-92790835 | None:intergenic | 40.0% | |
| CGCCAGAAAATGTGGATAAA+TGG | - | chr4.2:92791549-92791568 | MS.gene053224:intron | 40.0% | |
| CTTGATATCGCCAGAAAATG+TGG | - | chr4.2:92791541-92791560 | MS.gene053224:intron | 40.0% | |
| GTCAATCTTACACAACTGCA+AGG | + | chr4.2:92792558-92792577 | None:intergenic | 40.0% | |
| GTTGTTCTGTATGTTTGGTC+TGG | - | chr4.2:92791779-92791798 | MS.gene053224:intron | 40.0% | |
| TTACATGGGTTTCTCTGTTC+AGG | - | chr4.2:92791450-92791469 | MS.gene053224:intron | 40.0% | |
| TTGTGGAGACACCAAAAACT+TGG | - | chr4.2:92791595-92791614 | MS.gene053224:intron | 40.0% | |
| ! | CCCCATTTATCCACATTTTC+TGG | + | chr4.2:92791554-92791573 | None:intergenic | 40.0% |
| ! | TAAGCTGTTTAGGGCTTGTT+TGG | - | chr4.2:92790822-92790841 | MS.gene053224:intron | 40.0% |
| ! | TTGTGTAAGATTGACTCCGA+GGG | - | chr4.2:92792563-92792582 | MS.gene053224:intron | 40.0% |
| !! | GCTTGTGTAGTTTGTTTGTC+TGG | - | chr4.2:92791389-92791408 | MS.gene053224:intron | 40.0% |
| !! | TTACTTTTGCACCTTCATGG+AGG | + | chr4.2:92792010-92792029 | None:intergenic | 40.0% |
| !! | TTTTCGATTGGTGTTTTGCC+TGG | - | chr4.2:92792665-92792684 | MS.gene053224:intron | 40.0% |
| !!! | TTTTTTTTTGGTGGTGGCCA+GGG | - | chr4.2:92791097-92791116 | MS.gene053224:CDS | 40.0% |
| AATGCAGCTGTTGCATGTTG+TGG | - | chr4.2:92791578-92791597 | MS.gene053224:intron | 45.0% | |
| ACTTGTGCTTAGGAAGTCAC+TGG | - | chr4.2:92791962-92791981 | MS.gene053224:intron | 45.0% | |
| CGAGTTTAACATAGTCAGGC+TGG | + | chr4.2:92792079-92792098 | None:intergenic | 45.0% | |
| CGGGATTCATTCTGTAGTTG+TGG | - | chr4.2:92791242-92791261 | MS.gene053224:CDS | 45.0% | |
| CTTACACAACTGCAAGGAGA+AGG | + | chr4.2:92792552-92792571 | None:intergenic | 45.0% | |
| CTTAGGAAGTCACTGGCATA+TGG | - | chr4.2:92791969-92791988 | MS.gene053224:intron | 45.0% | |
| CTTCCTAAGCACAAGTTGCA+AGG | + | chr4.2:92791958-92791977 | None:intergenic | 45.0% | |
| GGAAAAGCTAGGAAGGTAAC+TGG | - | chr4.2:92792584-92792603 | MS.gene053224:intron | 45.0% | |
| GTGCTGCAGAACAACATTGT+AGG | + | chr4.2:92792742-92792761 | None:intergenic | 45.0% | |
| TCTTATCTGTGCGTCTTGTG+TGG | - | chr4.2:92791348-92791367 | MS.gene053224:intron | 45.0% | |
| TGCGAAGACACTTGGAGAAT+GGG | - | chr4.2:92792148-92792167 | MS.gene053224:intron | 45.0% | |
| TGTTTGAATAAGGGCCCGTA+TGG | + | chr4.2:92791063-92791082 | None:intergenic | 45.0% | |
| TTAACTGTTGAATGTGGCCG+TGG | - | chr4.2:92792690-92792709 | MS.gene053224:intron | 45.0% | |
| TTATACCTTGACCACCACAC+AGG | + | chr4.2:92792615-92792634 | None:intergenic | 45.0% | |
| ! | GTTGTGTAAGATTGACTCCG+AGG | - | chr4.2:92792562-92792581 | MS.gene053224:intron | 45.0% |
| !! | TACCTTCCTAGCTTTTCCCT+CGG | + | chr4.2:92792582-92792601 | None:intergenic | 45.0% |
| !!! | GTTTTTTTTTGGTGGTGGCC+AGG | - | chr4.2:92791096-92791115 | MS.gene053224:CDS | 45.0% |
| AAGACACTTGGAGAATGGGC+TGG | - | chr4.2:92792152-92792171 | MS.gene053224:intron | 50.0% | |
| AGGAAGTCACTGGCATATGG+TGG | - | chr4.2:92791972-92791991 | MS.gene053224:intron | 50.0% | |
| CCAACTGAGATAAGCTCACG+AGG | - | chr4.2:92791160-92791179 | MS.gene053224:CDS | 50.0% | |
| CCTCGTGAGCTTATCTCAGT+TGG | + | chr4.2:92791163-92791182 | None:intergenic | 50.0% | |
| CTGCCTTGCAACTTGTGCTT+AGG | - | chr4.2:92791952-92791971 | MS.gene053224:intron | 50.0% | |
| GGAAGTCACTGGCATATGGT+GGG | - | chr4.2:92791973-92791992 | MS.gene053224:intron | 50.0% | |
| GGTGTAGTGGTGGTTCTTGT+TGG | + | chr4.2:92792450-92792469 | None:intergenic | 50.0% | |
| GTGCGAAGACACTTGGAGAA+TGG | - | chr4.2:92792147-92792166 | MS.gene053224:intron | 50.0% | |
| GTTCCTAGTGCGAAGACACT+TGG | - | chr4.2:92792140-92792159 | MS.gene053224:intron | 50.0% | |
| TCTCCAAGTGTCTTCGCACT+AGG | + | chr4.2:92792146-92792165 | None:intergenic | 50.0% | |
| TTGACTCCGAGGGAAAAGCT+AGG | - | chr4.2:92792573-92792592 | MS.gene053224:intron | 50.0% | |
| !! | ATGATATCCATTGGCTCGCC+TGG | + | chr4.2:92791930-92791949 | None:intergenic | 50.0% |
| AAGGTCCAGGGTTTGAACCC+TGG | + | chr4.2:92791117-92791136 | None:intergenic | 55.0% | |
| CCTCCCCAAAATCCTGACCA+CGG | + | chr4.2:92792710-92792729 | None:intergenic | 55.0% | |
| CTCCGAGGGAAAAGCTAGGA+AGG | - | chr4.2:92792577-92792596 | MS.gene053224:intron | 55.0% | |
| TGGAATTCCAGGCGAGCCAA+TGG | - | chr4.2:92791920-92791939 | MS.gene053224:intron | 55.0% | |
| TGTTGAATGTGGCCGTGGTC+AGG | - | chr4.2:92792695-92792714 | MS.gene053224:intron | 55.0% | |
| ! | GTGGCCGTGGTCAGGATTTT+GGG | - | chr4.2:92792703-92792722 | MS.gene053224:intron | 55.0% |
| ! | TGGCCGTGGTCAGGATTTTG+GGG | - | chr4.2:92792704-92792723 | MS.gene053224:intron | 55.0% |
| ! | TGTGGCCGTGGTCAGGATTT+TGG | - | chr4.2:92792702-92792721 | MS.gene053224:intron | 55.0% |
| AACTGGCTGCTCCTGTGTGG+TGG | - | chr4.2:92792601-92792620 | MS.gene053224:intron | 60.0% | |
| CGCCTGGAATTCCAGCAGCA+GGG | + | chr4.2:92791914-92791933 | None:intergenic | 60.0% | |
| CTGCTCCTGTGTGGTGGTCA+AGG | - | chr4.2:92792607-92792626 | MS.gene053224:intron | 60.0% | |
| CTTGCACGTGGCCTCCATGA+AGG | - | chr4.2:92791996-92792015 | MS.gene053224:intron | 60.0% | |
| GCCTGGAATTCCAGCAGCAG+GGG | + | chr4.2:92791913-92791932 | None:intergenic | 60.0% | |
| GGTAACTGGCTGCTCCTGTG+TGG | - | chr4.2:92792598-92792617 | MS.gene053224:intron | 60.0% | |
| TCGCCTGGAATTCCAGCAGC+AGG | + | chr4.2:92791915-92791934 | None:intergenic | 60.0% | |
| TGGAATTCCAGCAGCAGGGG+CGG | + | chr4.2:92791910-92791929 | None:intergenic | 60.0% | |
| !! | CCGTGGTCAGGATTTTGGGG+AGG | - | chr4.2:92792707-92792726 | MS.gene053224:intron | 60.0% |
| !! | GCATATGGTGGGCTTGCACG+TGG | - | chr4.2:92791984-92792003 | MS.gene053224:intron | 60.0% |
| GCCCCTGCTGCTGGAATTCC+AGG | - | chr4.2:92791909-92791928 | MS.gene053224:intron | 65.0% | |
| GGTGGCCAGGGTTCAAACCC+TGG | - | chr4.2:92791109-92791128 | MS.gene053224:CDS | 65.0% | |
| CCAGCAGCAGGGGCGGCAAC+AGG | + | chr4.2:92791903-92791922 | None:intergenic | 75.0% | |
| CCTGTTGCCGCCCCTGCTGC+TGG | - | chr4.2:92791900-92791919 | MS.gene053224:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 92790452 | 92792776 | 92790452 | ID=MS.gene053224 |
| chr4.2 | mRNA | 92790452 | 92792776 | 92790452 | ID=MS.gene053224.t1;Parent=MS.gene053224 |
| chr4.2 | exon | 92792769 | 92792776 | 92792769 | ID=MS.gene053224.t1.exon1;Parent=MS.gene053224.t1 |
| chr4.2 | CDS | 92792769 | 92792776 | 92792769 | ID=cds.MS.gene053224.t1;Parent=MS.gene053224.t1 |
| chr4.2 | exon | 92791053 | 92791353 | 92791053 | ID=MS.gene053224.t1.exon2;Parent=MS.gene053224.t1 |
| chr4.2 | CDS | 92791053 | 92791353 | 92791053 | ID=cds.MS.gene053224.t1;Parent=MS.gene053224.t1 |
| chr4.2 | exon | 92790600 | 92790665 | 92790600 | ID=MS.gene053224.t1.exon3;Parent=MS.gene053224.t1 |
| chr4.2 | CDS | 92790600 | 92790665 | 92790600 | ID=cds.MS.gene053224.t1;Parent=MS.gene053224.t1 |
| chr4.2 | exon | 92790452 | 92790511 | 92790452 | ID=MS.gene053224.t1.exon4;Parent=MS.gene053224.t1 |
| chr4.2 | CDS | 92790452 | 92790511 | 92790452 | ID=cds.MS.gene053224.t1;Parent=MS.gene053224.t1 |
| Gene Sequence |
| Protein sequence |
