Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26803.t1 | RHN64436.1 | 95.1 | 1097 | 52 | 1 | 1 | 1095 | 1 | 1097 | 0.00E+00 | 1882.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26803.t1 | A0A396IFS0 | 95.1 | 1097 | 52 | 1 | 1 | 1095 | 1 | 1097 | 0.0e+00 | 1882.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049660 | MS.gene26803 | 0.817905 | 2.59E-52 | -1.69E-46 |
| MS.gene049989 | MS.gene26803 | 0.822796 | 1.96E-53 | -1.69E-46 |
| MS.gene05054 | MS.gene26803 | 0.814652 | 1.38E-51 | -1.69E-46 |
| MS.gene050648 | MS.gene26803 | 0.802493 | 5.47E-49 | -1.69E-46 |
| MS.gene051629 | MS.gene26803 | 0.814976 | 1.17E-51 | -1.69E-46 |
| MS.gene052372 | MS.gene26803 | 0.822889 | 1.86E-53 | -1.69E-46 |
| MS.gene053348 | MS.gene26803 | 0.803172 | 3.96E-49 | -1.69E-46 |
| MS.gene056526 | MS.gene26803 | 0.806396 | 8.39E-50 | -1.69E-46 |
| MS.gene058827 | MS.gene26803 | 0.844782 | 6.11E-59 | -1.69E-46 |
| MS.gene058828 | MS.gene26803 | 0.812322 | 4.49E-51 | -1.69E-46 |
| MS.gene059300 | MS.gene26803 | 0.816889 | 4.38E-52 | -1.69E-46 |
| MS.gene060473 | MS.gene26803 | 0.845206 | 4.69E-59 | -1.69E-46 |
| MS.gene060565 | MS.gene26803 | 0.843592 | 1.27E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26803.t1 | MTR_4g123670 | 94.937 | 632 | 30 | 1 | 466 | 1095 | 10 | 641 | 0.0 | 1121 |
| MS.gene26803.t1 | MTR_4g123690 | 97.406 | 424 | 11 | 0 | 1 | 424 | 1 | 424 | 0.0 | 820 |
| MS.gene26803.t1 | MTR_7g021500 | 22.309 | 641 | 390 | 26 | 7 | 612 | 6 | 573 | 1.86e-16 | 85.5 |
| MS.gene26803.t1 | MTR_7g021500 | 22.309 | 641 | 390 | 26 | 7 | 612 | 6 | 573 | 2.08e-16 | 85.1 |
| MS.gene26803.t1 | MTR_1g116957 | 22.082 | 634 | 392 | 23 | 10 | 612 | 7 | 569 | 3.74e-15 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26803.t1 | AT3G17340 | 53.248 | 1093 | 475 | 12 | 7 | 1086 | 11 | 1080 | 0.0 | 1057 |
| MS.gene26803.t1 | AT3G17340 | 53.033 | 1088 | 488 | 12 | 7 | 1086 | 11 | 1083 | 0.0 | 1054 |
| MS.gene26803.t1 | AT3G59020 | 22.484 | 636 | 381 | 29 | 14 | 612 | 14 | 574 | 5.71e-14 | 77.4 |
| MS.gene26803.t1 | AT3G59020 | 22.484 | 636 | 381 | 29 | 14 | 612 | 14 | 574 | 6.05e-14 | 77.4 |
Find 264 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACTTCTCAGACCCTTTC+AGG | 0.144240 | 8.2:+10460360 | MS.gene26803:CDS |
| TTTATCAGCCAAACGTAAAA+AGG | 0.185848 | 8.2:+10463093 | MS.gene26803:CDS |
| GAATGTTAGCAAGGAGTTTA+AGG | 0.217005 | 8.2:+10460033 | MS.gene26803:CDS |
| ATTATACCTTCTACAATTTC+AGG | 0.249830 | 8.2:-10466755 | None:intergenic |
| AAGCAACCAGCGCCGTTCTA+TGG | 0.256132 | 8.2:+10463132 | MS.gene26803:CDS |
| CCTGTGCGGGTTTCTGCTGC+TGG | 0.267830 | 8.2:+10464260 | MS.gene26803:CDS |
| CAAGGGCACGAGAATTTCTT+TGG | 0.270343 | 8.2:-10460827 | None:intergenic |
| TCAGCTTCTCACTTCAATTA+TGG | 0.272429 | 8.2:+10464480 | MS.gene26803:CDS |
| AAGATGGAGGCATATCAATT+TGG | 0.282646 | 8.2:+10466789 | MS.gene26803:CDS |
| CAAGAACTGGATATGGAATT+AGG | 0.293684 | 8.2:+10467938 | MS.gene26803:CDS |
| AAAGAAATTGTGAATTTAGA+TGG | 0.297865 | 8.2:+10466407 | MS.gene26803:CDS |
| TCATATATGGCAGTTACTTT+GGG | 0.299686 | 8.2:+10463767 | MS.gene26803:intron |
| AGAGCACAATTTATAATATC+TGG | 0.301452 | 8.2:-10462048 | None:intergenic |
| TGTATATTCTCAATTGCTTA+TGG | 0.306590 | 8.2:+10464199 | MS.gene26803:CDS |
| CAATGTTGCTAACTATTACT+TGG | 0.316604 | 8.2:-10464426 | None:intergenic |
| GTGTGAACGTTGGTGGCGTC+GGG | 0.319092 | 8.2:-10459763 | None:intergenic |
| ATCATATATGGCAGTTACTT+TGG | 0.322261 | 8.2:+10463766 | MS.gene26803:intron |
| TGCAGATTCGGCACAAGTTC+CGG | 0.322757 | 8.2:-10460259 | None:intergenic |
| TGGCGTCGGGGCTGAGGGTT+TGG | 0.325331 | 8.2:-10459750 | None:intergenic |
| ACCGGCTCCTTCGGAACTTT+GGG | 0.325806 | 8.2:-10460781 | None:intergenic |
| CTGCACTGTTGCAGCAGGTT+TGG | 0.326449 | 8.2:+10465536 | MS.gene26803:CDS |
| GGGAGAGAATCCTCTCTAAA+AGG | 0.327040 | 8.2:-10462405 | None:intergenic |
| CGTTGGTGGCGTCGGGGCTG+AGG | 0.328761 | 8.2:-10459756 | None:intergenic |
| AAACTGCTTCACTTCACTAA+TGG | 0.340507 | 8.2:+10467532 | MS.gene26803:CDS |
| TGGAGAAGGGGTAGAAAATC+AGG | 0.345138 | 8.2:-10464406 | None:intergenic |
| CGAAGATCAAGAACTGGATA+TGG | 0.353329 | 8.2:+10467931 | MS.gene26803:CDS |
| TTGTAATTCTTTCAACTGAA+TGG | 0.353975 | 8.2:-10467561 | None:intergenic |
| AATCGCTGCTCTGGCAGTTA+TGG | 0.356153 | 8.2:+10465411 | MS.gene26803:CDS |
| CTCACTTCAATTATGGAAGT+TGG | 0.358075 | 8.2:+10464487 | MS.gene26803:CDS |
| GGTGTATTTCATCAATTTGT+TGG | 0.366527 | 8.2:+10460853 | MS.gene26803:CDS |
| TTCTCATTCATTACCAATGC+TGG | 0.367696 | 8.2:-10462655 | None:intergenic |
| TGAAATTGTAGAAGGTATAA+TGG | 0.368284 | 8.2:+10466757 | MS.gene26803:CDS |
| CGTTCAATTGTAGAAGGAAT+TGG | 0.369905 | 8.2:+10466497 | MS.gene26803:CDS |
| GAGTCCGAGATGAAGTTAAT+TGG | 0.371530 | 8.2:+10466869 | MS.gene26803:CDS |
| TACCGGCTCCTTCGGAACTT+TGG | 0.376762 | 8.2:-10460782 | None:intergenic |
| TCTTCTATGCATGATGAATT+CGG | 0.380112 | 8.2:-10466227 | None:intergenic |
| TGTTATCCTGAAATTGTAGA+AGG | 0.380797 | 8.2:+10466749 | MS.gene26803:CDS |
| GGCAGAAGGATATTGCTTAA+TGG | 0.382188 | 8.2:-10466537 | None:intergenic |
| CTTTGGATACGAGCTCCAAT+TGG | 0.386810 | 8.2:-10460810 | None:intergenic |
| ATGGGACGATGTGTGGGATA+TGG | 0.387245 | 8.2:-10464528 | None:intergenic |
| TAGAGGCTTCCAAAGGGAAC+TGG | 0.388145 | 8.2:-10466699 | None:intergenic |
| CAAGAAGTACCCTGCTTATC+CGG | 0.389070 | 8.2:-10464233 | None:intergenic |
| TTGTGGGTTCAGTCTCAAAA+TGG | 0.389428 | 8.2:+10464554 | MS.gene26803:CDS |
| CGGAAGAAGAATTTCTTGAT+AGG | 0.391493 | 8.2:+10467849 | MS.gene26803:CDS |
| TGTAGAAGGTATAATGGAAA+AGG | 0.392818 | 8.2:+10466763 | MS.gene26803:CDS |
| CTCTACTGAATTCGTTTAGT+AGG | 0.394398 | 8.2:+10461791 | MS.gene26803:CDS |
| AAGATGTATATTTGACTAGA+TGG | 0.394680 | 8.2:+10461866 | MS.gene26803:CDS |
| TGAATAGCAGATTGCAGATT+CGG | 0.400057 | 8.2:-10460271 | None:intergenic |
| GATTCAGAATCAGATACTTC+AGG | 0.400279 | 8.2:-10465457 | None:intergenic |
| GGTGTGAACGTTGGTGGCGT+CGG | 0.401130 | 8.2:-10459764 | None:intergenic |
| CCTTCTACAATTGAACGTTC+AGG | 0.402070 | 8.2:-10466491 | None:intergenic |
| TGGGGTGGTACCGGCTCCTT+CGG | 0.406814 | 8.2:-10460790 | None:intergenic |
| ACGGTCGAGCTCGGCGGTGG+AGG | 0.408213 | 8.2:-10459785 | None:intergenic |
| CAGTCTGGAGCCTTGGCCTC+AGG | 0.411678 | 8.2:+10464585 | MS.gene26803:CDS |
| GGCACAGGTGGAGCTGGAGG+GGG | 0.412142 | 8.2:-10466470 | None:intergenic |
| TTTGGATACGAGCTCCAATT+GGG | 0.414683 | 8.2:-10460809 | None:intergenic |
| CTGAATGCCTTCCCTGGGTG+TGG | 0.415942 | 8.2:+10468361 | MS.gene26803:CDS |
| ATTGATTATGCCGGATAAGC+AGG | 0.416322 | 8.2:+10464223 | MS.gene26803:CDS |
| GGCTGAAGATGATGAGGATG+AGG | 0.416573 | 8.2:+10467607 | MS.gene26803:CDS |
| TGCTAAAGCTGCCGGGGCAT+TGG | 0.418419 | 8.2:+10467874 | MS.gene26803:CDS |
| AAGATGCTGATGAGTATATA+CGG | 0.421687 | 8.2:+10462791 | MS.gene26803:CDS |
| AGTAGAGGAGCTAGAGTTGA+TGG | 0.422542 | 8.2:-10461775 | None:intergenic |
| GGAGCCGGTACCACCCCAAT+TGG | 0.423828 | 8.2:+10460795 | MS.gene26803:CDS |
| TGTCAGAGCTGCTGTCAGTT+TGG | 0.423854 | 8.2:+10466318 | MS.gene26803:CDS |
| GGGGAAATTACCGGCGGAAA+TGG | 0.424520 | 8.2:-10459845 | None:intergenic |
| GTTGGTGGCGTCGGGGCTGA+GGG | 0.426656 | 8.2:-10459755 | None:intergenic |
| ATCGCTGCTCTGGCAGTTAT+GGG | 0.430547 | 8.2:+10465412 | MS.gene26803:CDS |
| AGATGGAGGCATATCAATTT+GGG | 0.431380 | 8.2:+10466790 | MS.gene26803:CDS |
| CTGTGCGGGTTTCTGCTGCT+GGG | 0.438483 | 8.2:+10464261 | MS.gene26803:CDS |
| AAGAACAATAAGTGCATTGA+TGG | 0.438486 | 8.2:-10460335 | None:intergenic |
| TACTTCTTGTTATCCTGTGC+GGG | 0.441447 | 8.2:+10464247 | MS.gene26803:CDS |
| CGTTCAGGCACAGGTGGAGC+TGG | 0.441676 | 8.2:-10466476 | None:intergenic |
| TATATTCAGGATGAAATTTG+TGG | 0.442837 | 8.2:+10462897 | MS.gene26803:intron |
| CCTGAACGTTCAATTGTAGA+AGG | 0.443900 | 8.2:+10466491 | MS.gene26803:CDS |
| ACCTCATTGCTAGCGCAGAC+TGG | 0.444036 | 8.2:+10463998 | MS.gene26803:CDS |
| ATTGAGCAACTCTTGAATCA+AGG | 0.444229 | 8.2:+10467485 | MS.gene26803:CDS |
| AGCAACCAGCGCCGTTCTAT+GGG | 0.447207 | 8.2:+10463133 | MS.gene26803:CDS |
| ACACAAATAGCACGAAGATA+TGG | 0.447226 | 8.2:-10466729 | None:intergenic |
| TCAACTAAAATCTTGAGAAT+AGG | 0.450318 | 8.2:-10460091 | None:intergenic |
| TTTGGGGTACTGATGGCATA+TGG | 0.450672 | 8.2:+10463784 | MS.gene26803:CDS |
| TGACAGAGCAGACATGGAAA+TGG | 0.452858 | 8.2:+10460973 | MS.gene26803:CDS |
| GAAGCGAACCCAGTTCCCTT+TGG | 0.454401 | 8.2:+10466690 | MS.gene26803:CDS |
| GCTAGCGCAGACTGGGTACT+TGG | 0.455217 | 8.2:+10464006 | MS.gene26803:CDS |
| TTTCCATGTCTGCTCTGTCA+TGG | 0.455872 | 8.2:-10460970 | None:intergenic |
| TGATGTAATTTCAAATGTGC+TGG | 0.457343 | 8.2:+10462435 | MS.gene26803:CDS |
| GTATCTGATTCTGAATCAAA+TGG | 0.459682 | 8.2:+10465463 | MS.gene26803:CDS |
| AGCTCCAATTGGGGTGGTAC+CGG | 0.462517 | 8.2:-10460799 | None:intergenic |
| AAGATTTGTCAACTTTGTTA+CGG | 0.462733 | 8.2:+10466246 | MS.gene26803:CDS |
| GTGTCTGACCTCTGGTAGAC+AGG | 0.464473 | 8.2:-10464040 | None:intergenic |
| GAAATTCTCGTGCCCTTGCT+TGG | 0.467717 | 8.2:+10460832 | MS.gene26803:CDS |
| TAACGTCCAGTCTGGAGCCT+TGG | 0.470061 | 8.2:+10464578 | MS.gene26803:CDS |
| TATTTGACTAGATGGAAGTC+TGG | 0.471684 | 8.2:+10461874 | MS.gene26803:CDS |
| ATTTCAAATGTGCTGGAGAC+TGG | 0.474308 | 8.2:+10462442 | MS.gene26803:CDS |
| AGTAGCCTCAAAAGAGCTGC+TGG | 0.474345 | 8.2:-10466834 | None:intergenic |
| AATCCACGGCAGCAACAATT+CGG | 0.474353 | 8.2:-10460216 | None:intergenic |
| CAAGTAATAGTTAGCAACAT+TGG | 0.474445 | 8.2:+10464427 | MS.gene26803:CDS |
| GCCGTGGATCAGGCAGCAAT+TGG | 0.475253 | 8.2:+10465502 | MS.gene26803:CDS |
| CAGGCACAGGTGGAGCTGGA+GGG | 0.475984 | 8.2:-10466472 | None:intergenic |
| GTAGAAGGTATAATGGAAAA+GGG | 0.476574 | 8.2:+10466764 | MS.gene26803:CDS |
| TGAGCGTGGAATCGCTGCTC+TGG | 0.476673 | 8.2:+10465402 | MS.gene26803:CDS |
| GGTTCAGTTATTATTGAAGA+GGG | 0.478660 | 8.2:+10467902 | MS.gene26803:CDS |
| GAGACGGTCGAGCTCGGCGG+TGG | 0.478885 | 8.2:-10459788 | None:intergenic |
| CACATCGTCCCATCTCTTGT+GGG | 0.479373 | 8.2:+10464538 | MS.gene26803:CDS |
| GAAGATATGGCAAGCAATAG+AGG | 0.480052 | 8.2:-10466716 | None:intergenic |
| GAGACTGAACCCACAAGAGA+TGG | 0.481151 | 8.2:-10464547 | None:intergenic |
| TCAGTTTCAATTGAGTATGT+TGG | 0.485998 | 8.2:-10466602 | None:intergenic |
| TCTGTCATGCTATCTGTTGA+TGG | 0.486195 | 8.2:+10466269 | MS.gene26803:CDS |
| TTTGGCTGATAAACTGTCAA+TGG | 0.487883 | 8.2:-10463083 | None:intergenic |
| CATGTTGGAATCAGAAGGAA+TGG | 0.491369 | 8.2:-10463191 | None:intergenic |
| GTTCCGAATTGTTGCTGCCG+TGG | 0.491398 | 8.2:+10460213 | MS.gene26803:intron |
| ATCTGCAATCTTCCCAGCAT+TGG | 0.491649 | 8.2:+10462642 | MS.gene26803:CDS |
| TTAGAGAGGATTCTCTCCCT+AGG | 0.491861 | 8.2:+10462409 | MS.gene26803:CDS |
| GCTTATGGCATTGATTATGC+CGG | 0.492311 | 8.2:+10464214 | MS.gene26803:CDS |
| ATGATGAATTCGGAAAATTC+TGG | 0.492503 | 8.2:-10466217 | None:intergenic |
| TGTATAGGACATGTCAGATT+GGG | 0.493213 | 8.2:+10462765 | MS.gene26803:intron |
| TGGTGTTATTTCAATGTCAA+AGG | 0.494392 | 8.2:+10462968 | MS.gene26803:CDS |
| GGCTGAGGGTTTGGTTGAGA+AGG | 0.494636 | 8.2:-10459741 | None:intergenic |
| ATTTCATCAATTTGTTGGAA+AGG | 0.495585 | 8.2:+10460858 | MS.gene26803:CDS |
| TTGAAATTACATCAAAACCT+AGG | 0.495804 | 8.2:-10462426 | None:intergenic |
| ACACATCGTCCCATCTCTTG+TGG | 0.496692 | 8.2:+10464537 | MS.gene26803:CDS |
| TGAAATTTGTGGATGGAGGG+AGG | 0.496969 | 8.2:+10462908 | MS.gene26803:CDS |
| AAAATGGCTAACGTCCAGTC+TGG | 0.497193 | 8.2:+10464570 | MS.gene26803:CDS |
| CTGAGGCCAAGGCTCCAGAC+TGG | 0.497684 | 8.2:-10464584 | None:intergenic |
| ATAATGGAAAAGGGTGAAGA+TGG | 0.498545 | 8.2:+10466773 | MS.gene26803:CDS |
| TCAGGCACAGGTGGAGCTGG+AGG | 0.500164 | 8.2:-10466473 | None:intergenic |
| TCTACTGAATTCGTTTAGTA+GGG | 0.500516 | 8.2:+10461792 | MS.gene26803:CDS |
| TGCTAACTATTACTTGGAGA+AGG | 0.503788 | 8.2:-10464420 | None:intergenic |
| AGGAGATGGAAAGGGAAGTG+AGG | 0.504262 | 8.2:-10459820 | None:intergenic |
| GCATTTGCATATTGTGAGGA+TGG | 0.504304 | 8.2:-10461002 | None:intergenic |
| CGGCGGAAATGGAGAGGAGA+TGG | 0.505405 | 8.2:-10459834 | None:intergenic |
| GATAGGTATGCTAAAGCTGC+CGG | 0.508067 | 8.2:+10467866 | MS.gene26803:CDS |
| ATAGGTATGCTAAAGCTGCC+GGG | 0.508773 | 8.2:+10467867 | MS.gene26803:CDS |
| ACAATTGAACGTTCAGGCAC+AGG | 0.509772 | 8.2:-10466485 | None:intergenic |
| ATGATGGTATTTGTCTATCA+AGG | 0.509981 | 8.2:-10468290 | None:intergenic |
| AGGCACAGGTGGAGCTGGAG+GGG | 0.510321 | 8.2:-10466471 | None:intergenic |
| AAATGGAGAGGAGATGGAAA+GGG | 0.510970 | 8.2:-10459828 | None:intergenic |
| TGAAGGTGTAAAGCAGTCAT+TGG | 0.512410 | 8.2:+10466622 | MS.gene26803:CDS |
| AAAGAATTACAAGATGAGAA+AGG | 0.513753 | 8.2:+10467572 | MS.gene26803:CDS |
| AGGATGAAATTTGTGGATGG+AGG | 0.517304 | 8.2:+10462904 | MS.gene26803:intron |
| GACGGAGAGACGGTCGAGCT+CGG | 0.517469 | 8.2:-10459794 | None:intergenic |
| GCTAACTATTACTTGGAGAA+GGG | 0.519103 | 8.2:-10464419 | None:intergenic |
| TGAAATTACATCAAAACCTA+GGG | 0.519223 | 8.2:-10462425 | None:intergenic |
| AGTGAGAAGCTGAAATAAGA+TGG | 0.520318 | 8.2:-10464470 | None:intergenic |
| ATGTATAGGACATGTCAGAT+TGG | 0.520551 | 8.2:+10462764 | MS.gene26803:intron |
| CCTCATTGCTAGCGCAGACT+GGG | 0.524923 | 8.2:+10463999 | MS.gene26803:CDS |
| TGAGAAAGGAGATGAAGAAG+AGG | 0.526073 | 8.2:+10467586 | MS.gene26803:CDS |
| GACTGGGTACTTGGAGAACT+AGG | 0.526955 | 8.2:+10464015 | MS.gene26803:CDS |
| AACATTCGAAGGTGTGGCGC+CGG | 0.529745 | 8.2:-10460017 | None:intergenic |
| GGATGTCGAAGATCAAGAAC+TGG | 0.532331 | 8.2:+10467925 | MS.gene26803:CDS |
| TGGCAGTTATGGGTCAGACA+TGG | 0.536229 | 8.2:+10465422 | MS.gene26803:CDS |
| TTCAATTATGGAAGTTGGAG+AGG | 0.536320 | 8.2:+10464492 | MS.gene26803:CDS |
| CGCCGCAATGTTGATATCAC+CGG | 0.536536 | 8.2:+10459998 | MS.gene26803:CDS |
| TCAACAGGAGGTGAAAATCA+AGG | 0.536898 | 8.2:+10459935 | MS.gene26803:intron |
| TCTCATTCATTACCAATGCT+GGG | 0.537036 | 8.2:-10462654 | None:intergenic |
| TTCAGTTATTATTGAAGAGG+GGG | 0.537554 | 8.2:+10467904 | MS.gene26803:CDS |
| TTGAGCAACTCTTGAATCAA+GGG | 0.538482 | 8.2:+10467486 | MS.gene26803:CDS |
| CAGTTACTTTGGGGTACTGA+TGG | 0.538531 | 8.2:+10463777 | MS.gene26803:intron |
| CATTACTTACTGCGAAATGT+AGG | 0.538556 | 8.2:-10461024 | None:intergenic |
| CTTACCAATTAACTTCATCT+CGG | 0.540765 | 8.2:-10466873 | None:intergenic |
| TCCAATAGAGTTGTAAAATG+TGG | 0.541694 | 8.2:-10462619 | None:intergenic |
| TGTGAAACATAGTTTATGGC+CGG | 0.542404 | 8.2:+10460240 | MS.gene26803:CDS |
| TCAACACACACCTGAGGCCA+AGG | 0.542867 | 8.2:-10464595 | None:intergenic |
| AAACTAACCTGTGTGGATAA+CGG | 0.543886 | 8.2:-10465565 | None:intergenic |
| CATCTCCTCTCCATTTCCGC+CGG | 0.544957 | 8.2:+10459835 | MS.gene26803:CDS |
| GCCAATTGCTGCCTGATCCA+CGG | 0.545947 | 8.2:-10465503 | None:intergenic |
| GGTTGAAGAATATGAAGAAA+CGG | 0.547124 | 8.2:+10467829 | MS.gene26803:CDS |
| GGTGGAGGTGTGAACGTTGG+TGG | 0.547293 | 8.2:-10459770 | None:intergenic |
| AACTCCTTGCTAACATTCGA+AGG | 0.548924 | 8.2:-10460028 | None:intergenic |
| TTCAATTAACACAGGGATGG+AGG | 0.549854 | 8.2:+10462587 | MS.gene26803:intron |
| TCGATGGTTCAAACTCTACA+TGG | 0.550475 | 8.2:+10460308 | MS.gene26803:CDS |
| GGATGAAATTTGTGGATGGA+GGG | 0.551554 | 8.2:+10462905 | MS.gene26803:intron |
| AAAAGTGCAGTAAACTTGCT+TGG | 0.553241 | 8.2:+10462948 | MS.gene26803:CDS |
| ACAAGAGATGGGACGATGTG+TGG | 0.553250 | 8.2:-10464535 | None:intergenic |
| CTTCCCTCGTCACACGGCAT+AGG | 0.554422 | 8.2:+10461920 | MS.gene26803:CDS |
| TGAGACATGTTGGAATCAGA+AGG | 0.558531 | 8.2:-10463196 | None:intergenic |
| TGTGCGGGTTTCTGCTGCTG+GGG | 0.558804 | 8.2:+10464262 | MS.gene26803:CDS |
| CATGTTCATACTATATCTGA+AGG | 0.559424 | 8.2:-10462823 | None:intergenic |
| CTGCAATAGGTTGTTGAGCG+TGG | 0.561240 | 8.2:+10465388 | MS.gene26803:intron |
| CAGAATAGTCATCTTATCGA+TGG | 0.563352 | 8.2:+10460292 | MS.gene26803:CDS |
| CTGTCATGCTATCTGTTGAT+GGG | 0.563599 | 8.2:+10466270 | MS.gene26803:CDS |
| AGAAGAGGCTGAAGATGATG+AGG | 0.563759 | 8.2:+10467601 | MS.gene26803:CDS |
| GTACTTCTTGTTATCCTGTG+CGG | 0.565303 | 8.2:+10464246 | MS.gene26803:CDS |
| GTTCAGTTATTATTGAAGAG+GGG | 0.565845 | 8.2:+10467903 | MS.gene26803:CDS |
| GTCAGACATGGGAAGACTCT+AGG | 0.566775 | 8.2:+10465434 | MS.gene26803:CDS |
| TTGATGAAATACACCAAGCA+AGG | 0.568054 | 8.2:-10460845 | None:intergenic |
| TACCATCATGTGCTTATACA+AGG | 0.568163 | 8.2:+10468304 | MS.gene26803:CDS |
| GCTGCCGGGGCATTGGAAGA+TGG | 0.568216 | 8.2:+10467881 | MS.gene26803:CDS |
| TCCCAAAGTTCCGAAGGAGC+CGG | 0.568551 | 8.2:+10460780 | MS.gene26803:CDS |
| TGGTTCAGTTATTATTGAAG+AGG | 0.569142 | 8.2:+10467901 | MS.gene26803:CDS |
| GGCGGTGGAGGTGTGAACGT+TGG | 0.576113 | 8.2:-10459773 | None:intergenic |
| TGATTGCAGAGTGGCATGCA+TGG | 0.578337 | 8.2:+10466348 | MS.gene26803:CDS |
| AGAGGCTTCCAAAGGGAACT+GGG | 0.578676 | 8.2:-10466698 | None:intergenic |
| TGAACCATCTTCCAATGCCC+CGG | 0.578708 | 8.2:-10467885 | None:intergenic |
| TGCTCTGTCATGGTTCGCTA+CGG | 0.578713 | 8.2:-10460960 | None:intergenic |
| AAACTCATGACGAGCTGCGA+CGG | 0.579274 | 8.2:-10468337 | None:intergenic |
| TCAATGGAAGTCTCCATTGG+TGG | 0.580383 | 8.2:-10463067 | None:intergenic |
| ATGGAAAAGGGTGAAGATGG+AGG | 0.581403 | 8.2:+10466776 | MS.gene26803:CDS |
| AGAATCCTCTCTAAAAGGAA+AGG | 0.581742 | 8.2:-10462400 | None:intergenic |
| GAAATGGAGAGGAGATGGAA+AGG | 0.583102 | 8.2:-10459829 | None:intergenic |
| CTTGCTAACATTCGAAGGTG+TGG | 0.583712 | 8.2:-10460023 | None:intergenic |
| GTTTCCTATGCCGTGTGACG+AGG | 0.585976 | 8.2:-10461924 | None:intergenic |
| AGACTGAACCCACAAGAGAT+GGG | 0.586000 | 8.2:-10464546 | None:intergenic |
| TTCAGGATGAAATTTGTGGA+TGG | 0.586043 | 8.2:+10462901 | MS.gene26803:intron |
| AGTGAGGAGCGACGGAGAGA+CGG | 0.586825 | 8.2:-10459804 | None:intergenic |
| TTTGAATCCCAAAGTTCCGA+AGG | 0.587938 | 8.2:+10460774 | MS.gene26803:CDS |
| CCAGCAGCAGAAACCCGCAC+AGG | 0.588649 | 8.2:-10464260 | None:intergenic |
| CTGCTTCACTTCACTAATGG+AGG | 0.589139 | 8.2:+10467535 | MS.gene26803:CDS |
| CTGTCAATGGAAGTCTCCAT+TGG | 0.590095 | 8.2:-10463070 | None:intergenic |
| GAAAGGGAAGTGAGGAGCGA+CGG | 0.593521 | 8.2:-10459812 | None:intergenic |
| CAAGAGATGGGACGATGTGT+GGG | 0.595039 | 8.2:-10464534 | None:intergenic |
| ATGTTGGAATCAGAAGGAAT+GGG | 0.596110 | 8.2:-10463190 | None:intergenic |
| CAAGCAATAGAGGCTTCCAA+AGG | 0.597557 | 8.2:-10466706 | None:intergenic |
| AAGCAATAGAGGCTTCCAAA+GGG | 0.601007 | 8.2:-10466705 | None:intergenic |
| ACATACTCAATTGAAACTGA+AGG | 0.601068 | 8.2:+10466605 | MS.gene26803:CDS |
| GTCCTTGTATAAGCACATGA+TGG | 0.601157 | 8.2:-10468306 | None:intergenic |
| CATATATGGCAGTTACTTTG+GGG | 0.601229 | 8.2:+10463768 | MS.gene26803:intron |
| CTAACTATTACTTGGAGAAG+GGG | 0.602486 | 8.2:-10464418 | None:intergenic |
| CATGTGCTTATACAAGGACA+AGG | 0.603007 | 8.2:+10468310 | MS.gene26803:CDS |
| CAACCAGCGCCGTTCTATGG+GGG | 0.607565 | 8.2:+10463135 | MS.gene26803:CDS |
| GGGGTACTGATGGCATATGG+TGG | 0.607880 | 8.2:+10463787 | MS.gene26803:CDS |
| GGCAGTTATGGGTCAGACAT+GGG | 0.608317 | 8.2:+10465423 | MS.gene26803:CDS |
| GAGAAGGGGTAGAAAATCAG+GGG | 0.609077 | 8.2:-10464404 | None:intergenic |
| GGAGAAGGGGTAGAAAATCA+GGG | 0.613689 | 8.2:-10464405 | None:intergenic |
| CCCAGTCTGCGCTAGCAATG+AGG | 0.614445 | 8.2:-10463999 | None:intergenic |
| TAACAATGCTCATTCGAACA+CGG | 0.614541 | 8.2:+10463938 | MS.gene26803:CDS |
| GAACCATGACAGAGCAGACA+TGG | 0.616303 | 8.2:+10460967 | MS.gene26803:CDS |
| AGCTAGAGTTGATGGCATGT+AGG | 0.616932 | 8.2:-10461767 | None:intergenic |
| TTTCCTATGCCGTGTGACGA+GGG | 0.617633 | 8.2:-10461923 | None:intergenic |
| CAAGCTCTATATGTGGCAGA+AGG | 0.617895 | 8.2:-10466551 | None:intergenic |
| CGCCGGTGATATCAACATTG+CGG | 0.619290 | 8.2:-10460000 | None:intergenic |
| TTGGACAATGTAGTAATGCA+TGG | 0.621160 | 8.2:-10466583 | None:intergenic |
| CACACCTTCGAATGTTAGCA+AGG | 0.623375 | 8.2:+10460024 | MS.gene26803:CDS |
| GTGTGGTACAGAAACAGCTA+TGG | 0.626514 | 8.2:-10463977 | None:intergenic |
| TTGGATACGAGCTCCAATTG+GGG | 0.629397 | 8.2:-10460808 | None:intergenic |
| ATTGAACGTTCAGGCACAGG+TGG | 0.629530 | 8.2:-10466482 | None:intergenic |
| ACATGAGCAAGCTCTATATG+TGG | 0.630767 | 8.2:-10466558 | None:intergenic |
| GATTGCAGAGTGGCATGCAT+GGG | 0.631699 | 8.2:+10466349 | MS.gene26803:CDS |
| AATTACCGGCGGAAATGGAG+AGG | 0.633426 | 8.2:-10459840 | None:intergenic |
| CTACTAAACGAATTCAGTAG+AGG | 0.633526 | 8.2:-10461790 | None:intergenic |
| ACTATGTTTCACAAAATCCA+CGG | 0.637699 | 8.2:-10460230 | None:intergenic |
| GCTAACACCGTTATCCACAC+AGG | 0.637921 | 8.2:+10465558 | MS.gene26803:CDS |
| TGTGAACGTTGGTGGCGTCG+GGG | 0.637949 | 8.2:-10459762 | None:intergenic |
| TTGATTATGCCGGATAAGCA+GGG | 0.638468 | 8.2:+10464224 | MS.gene26803:CDS |
| GATACGAGCTCCAATTGGGG+TGG | 0.640240 | 8.2:-10460805 | None:intergenic |
| GCAACCAGCGCCGTTCTATG+GGG | 0.641275 | 8.2:+10463134 | MS.gene26803:CDS |
| ATATAAACCACACCCAGGGA+AGG | 0.642312 | 8.2:-10468368 | None:intergenic |
| TTGTTTAAATTAGGACTCGG+AGG | 0.646414 | 8.2:+10467808 | MS.gene26803:intron |
| TGATGAAATACACCAAGCAA+GGG | 0.657773 | 8.2:-10460844 | None:intergenic |
| TGGAAATATAAACCACACCC+AGG | 0.658235 | 8.2:-10468373 | None:intergenic |
| GGCGCTCAAACTAACCTGTG+TGG | 0.662812 | 8.2:-10465572 | None:intergenic |
| AGCATTGGTAATGAATGAGA+AGG | 0.663030 | 8.2:+10462657 | MS.gene26803:CDS |
| TAGGTATGCTAAAGCTGCCG+GGG | 0.663082 | 8.2:+10467868 | MS.gene26803:CDS |
| GATGAGAGTAATCTCCGCCA+TGG | 0.663669 | 8.2:-10459713 | None:intergenic |
| TTGAATCAAGGGAAGTCATG+TGG | 0.667733 | 8.2:+10467497 | MS.gene26803:CDS |
| GGAGAGACGGTCGAGCTCGG+CGG | 0.677569 | 8.2:-10459791 | None:intergenic |
| GGCATATGGTGGTCTGCAAG+AGG | 0.685318 | 8.2:+10463798 | MS.gene26803:CDS |
| GGAAATATAAACCACACCCA+GGG | 0.689031 | 8.2:-10468372 | None:intergenic |
| TGACTCTGAAGATTACGATG+AGG | 0.694385 | 8.2:+10467643 | MS.gene26803:CDS |
| ACTAGGCTCCTGTCTACCAG+AGG | 0.694654 | 8.2:+10464032 | MS.gene26803:CDS |
| TCTGCGCTAGCAATGAGGTG+TGG | 0.712923 | 8.2:-10463994 | None:intergenic |
| GAAACAGCTATGGTATACAG+TGG | 0.713847 | 8.2:-10463967 | None:intergenic |
| GTAGGCATTTGCATATTGTG+AGG | 0.716268 | 8.2:-10461006 | None:intergenic |
| GGTCTGCAATGATTGCAGAG+TGG | 0.763171 | 8.2:+10466339 | MS.gene26803:CDS |
| AGAAGGGGTAGAAAATCAGG+GGG | 0.766386 | 8.2:-10464403 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 10459715 | 10468405 | 10459715 | ID=MS.gene26803 |
| chr8.2 | mRNA | 10459715 | 10468405 | 10459715 | ID=MS.gene26803.t1;Parent=MS.gene26803 |
| chr8.2 | exon | 10459715 | 10459856 | 10459715 | ID=MS.gene26803.t1.exon1;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10459715 | 10459856 | 10459715 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10459942 | 10460117 | 10459942 | ID=MS.gene26803.t1.exon2;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10459942 | 10460117 | 10459942 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10460214 | 10460381 | 10460214 | ID=MS.gene26803.t1.exon3;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10460214 | 10460381 | 10460214 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10460769 | 10460879 | 10460769 | ID=MS.gene26803.t1.exon4;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10460769 | 10460879 | 10460769 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10460959 | 10461036 | 10460959 | ID=MS.gene26803.t1.exon5;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10460959 | 10461036 | 10460959 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10461760 | 10461956 | 10461760 | ID=MS.gene26803.t1.exon6;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10461760 | 10461956 | 10461760 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10462041 | 10462101 | 10462041 | ID=MS.gene26803.t1.exon7;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10462041 | 10462101 | 10462041 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10462394 | 10462468 | 10462394 | ID=MS.gene26803.t1.exon8;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10462394 | 10462468 | 10462394 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10462601 | 10462678 | 10462601 | ID=MS.gene26803.t1.exon9;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10462601 | 10462678 | 10462601 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10462772 | 10462834 | 10462772 | ID=MS.gene26803.t1.exon10;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10462772 | 10462834 | 10462772 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10462906 | 10462989 | 10462906 | ID=MS.gene26803.t1.exon11;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10462906 | 10462989 | 10462906 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10463064 | 10463236 | 10463064 | ID=MS.gene26803.t1.exon12;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10463064 | 10463236 | 10463064 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10463780 | 10463819 | 10463780 | ID=MS.gene26803.t1.exon13;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10463780 | 10463819 | 10463780 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10463910 | 10464053 | 10463910 | ID=MS.gene26803.t1.exon14;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10463910 | 10464053 | 10463910 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10464185 | 10464304 | 10464185 | ID=MS.gene26803.t1.exon15;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10464185 | 10464304 | 10464185 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10464391 | 10464606 | 10464391 | ID=MS.gene26803.t1.exon16;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10464391 | 10464606 | 10464391 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10465397 | 10465579 | 10465397 | ID=MS.gene26803.t1.exon17;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10465397 | 10465579 | 10465397 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10466206 | 10466890 | 10466206 | ID=MS.gene26803.t1.exon18;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10466206 | 10466890 | 10466206 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10467465 | 10467664 | 10467465 | ID=MS.gene26803.t1.exon19;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10467465 | 10467664 | 10467465 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10467821 | 10467959 | 10467821 | ID=MS.gene26803.t1.exon20;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10467821 | 10467959 | 10467821 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| chr8.2 | exon | 10468251 | 10468405 | 10468251 | ID=MS.gene26803.t1.exon21;Parent=MS.gene26803.t1 |
| chr8.2 | CDS | 10468251 | 10468405 | 10468251 | ID=cds.MS.gene26803.t1;Parent=MS.gene26803.t1 |
| Gene Sequence |
| Protein sequence |
