AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26887


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26887.t1 MTR_1g103690 98.154 325 6 0 1 325 1 325 0.0 635
MS.gene26887.t1 MTR_5g006340 94.154 325 19 0 1 325 1 325 0.0 571
MS.gene26887.t1 MTR_1g081610 87.963 324 39 0 1 324 1 324 0.0 533
MS.gene26887.t1 MTR_4g087490 71.384 318 91 0 8 325 47 364 6.42e-170 476
MS.gene26887.t1 MTR_1g081620 72.897 321 87 0 4 324 3 323 3.86e-165 462
MS.gene26887.t1 MTR_1g081625 73.438 320 85 0 5 324 4 323 1.26e-161 454
MS.gene26887.t1 MTR_4g087510 66.981 318 96 2 8 325 47 355 4.58e-157 443
MS.gene26887.t1 MTR_7g078070 62.025 316 120 0 6 321 59 374 1.22e-143 410
MS.gene26887.t1 MTR_7g078070 62.987 308 114 0 14 321 7 314 1.72e-141 402
MS.gene26887.t1 MTR_7g087110 62.857 315 107 1 7 321 64 368 4.22e-135 388
MS.gene26887.t1 MTR_4g087520 73.704 270 71 0 56 325 1 270 2.87e-133 380
MS.gene26887.t1 MTR_1g081640 69.965 283 85 0 3 285 2 284 1.09e-130 375
MS.gene26887.t1 MTR_7g078070 62.989 281 104 0 41 321 1 281 1.13e-128 369
MS.gene26887.t1 MTR_5g095670 29.745 353 189 6 12 307 48 398 7.07e-43 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26887.t1 AT4G14880 81.818 319 58 0 6 324 3 321 0.0 513
MS.gene26887.t1 AT4G14880 81.818 319 58 0 6 324 3 321 0.0 513
MS.gene26887.t1 AT4G14880 81.818 319 58 0 6 324 3 321 0.0 513
MS.gene26887.t1 AT4G14880 81.818 319 58 0 6 324 3 321 0.0 513
MS.gene26887.t1 AT4G14880 81.818 319 58 0 6 324 3 321 0.0 513
MS.gene26887.t1 AT3G59760 74.843 318 80 0 7 324 112 429 1.58e-164 465
MS.gene26887.t1 AT3G59760 74.843 318 80 0 7 324 112 429 2.32e-164 465
MS.gene26887.t1 AT2G43750 74.845 322 81 0 3 324 70 391 6.69e-164 462
MS.gene26887.t1 AT2G43750 74.845 322 81 0 3 324 70 391 6.69e-164 462
MS.gene26887.t1 AT3G04940 68.827 324 101 0 1 324 1 324 6.16e-157 442
MS.gene26887.t1 AT3G04940 68.827 324 101 0 1 324 1 324 6.16e-157 442
MS.gene26887.t1 AT5G28020 71.651 321 91 0 4 324 3 323 1.30e-155 439
MS.gene26887.t1 AT5G28020 71.651 321 91 0 4 324 3 323 1.30e-155 439
MS.gene26887.t1 AT5G28020 71.651 321 91 0 4 324 3 323 1.30e-155 439
MS.gene26887.t1 AT5G28020 71.651 321 91 0 4 324 3 323 1.30e-155 439
MS.gene26887.t1 AT5G28020 71.651 321 91 0 4 324 3 323 1.30e-155 439
MS.gene26887.t1 AT3G59760 75.862 290 70 0 7 296 112 401 1.30e-149 427
MS.gene26887.t1 AT3G22460 77.407 270 41 1 56 325 1 250 1.42e-149 421
MS.gene26887.t1 AT5G28030 68.536 321 101 0 4 324 3 323 5.21e-146 414
MS.gene26887.t1 AT5G28030 68.536 321 101 0 4 324 3 323 5.21e-146 414
MS.gene26887.t1 AT5G28030 68.536 321 101 0 4 324 3 323 5.21e-146 414
MS.gene26887.t1 AT5G28030 68.536 321 101 0 4 324 3 323 5.21e-146 414
MS.gene26887.t1 AT3G61440 62.179 312 118 0 10 321 51 362 3.87e-136 391
MS.gene26887.t1 AT3G03630 61.562 320 113 1 4 323 95 404 2.67e-131 380
MS.gene26887.t1 AT3G61440 63.534 266 97 0 56 321 1 266 4.75e-118 341
MS.gene26887.t1 AT3G22460 85.635 181 26 0 8 188 8 188 6.10e-113 325
MS.gene26887.t1 AT5G28030 66.532 248 83 0 4 251 3 250 7.08e-112 325
MS.gene26887.t1 AT3G61440 60.687 262 103 0 10 271 51 312 9.77e-110 323
MS.gene26887.t1 AT3G61440 62.500 240 90 0 82 321 2 241 9.05e-104 304
MS.gene26887.t1 AT5G28020 70.042 237 71 0 88 324 1 237 1.15e-103 303
MS.gene26887.t1 AT1G55880 28.453 362 199 8 4 307 36 395 3.22e-39 143
MS.gene26887.t1 AT1G55880 30.417 240 125 4 12 210 44 282 1.12e-32 124

Find 94 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACAAATAGGCCTTCTTTA+AGG 0.110579 1.4:+80218793 None:intergenic
AGAACCATTCTTCTCTCTTT+TGG 0.169837 1.4:-80219883 MS.gene26887:CDS
GCCCCTTTCATTCCCTTTGC+AGG 0.215231 1.4:+80219838 None:intergenic
TGCTGCCAAACTGGAATTAA+TGG 0.244427 1.4:-80220641 MS.gene26887:CDS
ATTAAAGATAACCTTGATAT+TGG 0.251594 1.4:+80219517 None:intergenic
GATGCATTTGTTAGTGGTAT+AGG 0.279418 1.4:-80219590 MS.gene26887:CDS
GGGCATCGGATTGGCCTTCT+TGG 0.298899 1.4:-80219965 MS.gene26887:CDS
ACTCACTTCTGTAATATCTT+TGG 0.326873 1.4:+80220833 None:intergenic
TACAAATAGGCCTTCTTTAA+GGG 0.332733 1.4:+80218794 None:intergenic
TGCCACTTGTTGGCTCAATA+AGG 0.334733 1.4:+80219992 None:intergenic
ATGCATTTGTTAGTGGTATA+GGG 0.356996 1.4:-80219589 MS.gene26887:CDS
TTCAAATTGCTGAAGGATAT+AGG 0.362222 1.4:+80219774 None:intergenic
ATATTTCCCAACACCTGTTA+TGG 0.367102 1.4:+80219556 None:intergenic
AAACCACTGGTCCAGAGATA+TGG 0.372068 1.4:-80219634 MS.gene26887:CDS
TGCTCGAGTTGCTGCCAAAC+TGG 0.377214 1.4:-80220650 MS.gene26887:CDS
AAAGTTGATGCATTTGTTAG+TGG 0.411743 1.4:-80219596 MS.gene26887:CDS
TGCTGAAGGATATAGGCATT+TGG 0.414477 1.4:+80219781 None:intergenic
ATGCCCGTATTGCCACTTGT+TGG 0.417507 1.4:+80219982 None:intergenic
CCTGTGCCTTTCCATATCTC+TGG 0.417592 1.4:+80219623 None:intergenic
AATGATAAGCTTGTAGCCTT+TGG 0.418235 1.4:+80219936 None:intergenic
ATAGGTACCTTTGGATTGGC+AGG 0.419227 1.4:+80219748 None:intergenic
GGCTTTCCTCCGGACAGAAC+GGG 0.421175 1.4:+80219342 None:intergenic
GGGACTGGTGGTACCATAAC+AGG 0.426261 1.4:-80219569 MS.gene26887:CDS
CAGTTCATGGTTCAAAAGTC+AGG 0.435823 1.4:+80218328 None:intergenic
CTTTCAAGACTCATTGAAGC+AGG 0.439398 1.4:+80219907 None:intergenic
GACAGAACGGGACTTTCAAC+TGG 0.446402 1.4:+80219354 None:intergenic
GATATAGGCATTTGGAGTCT+TGG 0.449955 1.4:+80219789 None:intergenic
AAGCTTCTTGCCCTTAAAGA+AGG 0.457267 1.4:-80218804 MS.gene26887:CDS
AGAGCAGAATTCCAATATCA+AGG 0.465612 1.4:-80219528 MS.gene26887:intron
TGGTTCCATTAATTCCAGTT+TGG 0.469327 1.4:+80220636 None:intergenic
ATCCTCTGTGCTGTTTGAAT+CGG 0.472205 1.4:-80218370 MS.gene26887:CDS
TGAGCCAACAAGTGGCAATA+CGG 0.481402 1.4:-80219986 MS.gene26887:CDS
AAGATTCAAGGGATTGGTGC+TGG 0.484894 1.4:-80219215 MS.gene26887:CDS
GCCTTTGGCTGCTGCCAAGA+AGG 0.490662 1.4:+80219951 None:intergenic
GATTGCTGATGCAGAGGAGA+AGG 0.491875 1.4:-80220456 MS.gene26887:CDS
TGGAGCTGAGTTGGTTCTCA+CGG 0.494857 1.4:-80219863 MS.gene26887:CDS
AGGTACCTCTCACCAAAGCT+AGG 0.500820 1.4:+80218393 None:intergenic
CTAGGTCCACACAAGATTCA+AGG 0.500992 1.4:-80219227 MS.gene26887:intron
ACCATGGCAGTTGAAAGGTC+TGG 0.505654 1.4:-80220861 MS.gene26887:CDS
GATCCTGCAAAGGGAATGAA+AGG 0.508872 1.4:-80219841 MS.gene26887:CDS
GGGACTAATTACGCCTGGCC+AGG 0.509762 1.4:-80220435 MS.gene26887:intron
TGGCAATACGGGCATCGGAT+TGG 0.510586 1.4:-80219974 MS.gene26887:CDS
CCACACAAGATTCAAGGGAT+TGG 0.512912 1.4:-80219221 MS.gene26887:CDS
GCCTTCTTGGCAGCAGCCAA+AGG 0.516788 1.4:-80219952 MS.gene26887:CDS
TGCTGTTTGAATCGGTGAGA+CGG 0.517705 1.4:-80218362 MS.gene26887:CDS
TCCAGACCTTTCAACTGCCA+TGG 0.518086 1.4:+80220860 None:intergenic
TAACAAGTACCAACCTGGCC+AGG 0.519163 1.4:+80220422 None:intergenic
GTTGAAAGTCCCGTTCTGTC+CGG 0.521562 1.4:-80219351 MS.gene26887:CDS
GAGCCAACAAGTGGCAATAC+GGG 0.523351 1.4:-80219985 MS.gene26887:CDS
GTAGATAGGTACCTTTGGAT+TGG 0.525339 1.4:+80219744 None:intergenic
ACAAGTGGCAATACGGGCAT+CGG 0.529614 1.4:-80219979 MS.gene26887:CDS
GTGGTACCATAACAGGTGTT+GGG 0.539844 1.4:-80219562 MS.gene26887:CDS
TAACTAACCAGGCTTTCCTC+CGG 0.540478 1.4:+80219332 None:intergenic
TTTCCATATCTCTGGACCAG+TGG 0.541184 1.4:+80219631 None:intergenic
GCAAAACGACCAGAAAATGC+TGG 0.544487 1.4:-80218558 MS.gene26887:CDS
GTTCTGTCCGGAGGAAAGCC+TGG 0.548534 1.4:-80219339 MS.gene26887:intron
GGTGGTACCATAACAGGTGT+TGG 0.550475 1.4:-80219563 MS.gene26887:CDS
GTTCTCACGGATCCTGCAAA+GGG 0.558135 1.4:-80219850 MS.gene26887:CDS
GAGAAGGGACTAATTACGCC+TGG 0.562602 1.4:-80220440 MS.gene26887:CDS
GCTGTTTGAATCGGTGAGAC+GGG 0.567929 1.4:-80218361 MS.gene26887:CDS
CTGAAACCATGGCAGTTGAA+AGG 0.570234 1.4:-80220866 None:intergenic
GGTTCTCACGGATCCTGCAA+AGG 0.571382 1.4:-80219851 MS.gene26887:CDS
CATGCTCTAGTGTAAAAGAC+AGG 0.572827 1.4:-80220615 MS.gene26887:intron
TTTGTTAGTGGTATAGGGAC+TGG 0.573663 1.4:-80219584 MS.gene26887:CDS
TAGGTACCTTTGGATTGGCA+GGG 0.578890 1.4:+80219749 None:intergenic
TATCTTAATGGCAGCTGCCG+CGG 0.587252 1.4:+80218581 None:intergenic
TATTATGCAGCTGTATGGAG+TGG 0.587487 1.4:-80219379 MS.gene26887:intron
GTCCTTATTGAGCCAACAAG+TGG 0.589600 1.4:-80219994 MS.gene26887:CDS
CCAGAGATATGGAAAGGCAC+AGG 0.593497 1.4:-80219623 MS.gene26887:CDS
ATTCAAACAGCACAGAGGAT+AGG 0.595881 1.4:+80218373 None:intergenic
AGCTCCAAAAGAGAGAAGAA+TGG 0.598518 1.4:+80219879 None:intergenic
AGTATATCTGAATAAAATCA+CGG 0.598658 1.4:-80220683 MS.gene26887:CDS
TAGGTCCACACAAGATTCAA+GGG 0.605501 1.4:-80219226 MS.gene26887:CDS
GAGATATGGAAAGGCACAGG+AGG 0.606059 1.4:-80219620 MS.gene26887:CDS
AGGCTTTCCTCCGGACAGAA+CGG 0.607191 1.4:+80219341 None:intergenic
ATTGCTGATGCAGAGGAGAA+GGG 0.608166 1.4:-80220455 MS.gene26887:CDS
ATCCTGCAAAGGGAATGAAA+GGG 0.610783 1.4:-80219840 MS.gene26887:CDS
TAGTATGATTGCTGATGCAG+AGG 0.611040 1.4:-80220462 MS.gene26887:CDS
TGAAAACCCTGCCAATCCAA+AGG 0.621387 1.4:-80219755 MS.gene26887:intron
AATATCATCTGGAGCTGCCG+CGG 0.622299 1.4:-80218598 MS.gene26887:CDS
TATCTGAATAAAATCACGGA+TGG 0.622319 1.4:-80220679 MS.gene26887:CDS
AGACTAACATCCAATACCCC+GGG 0.624475 1.4:+80219185 None:intergenic
CCAATCCCTTGAATCTTGTG+TGG 0.626382 1.4:+80219221 None:intergenic
GGTACCTCTCACCAAAGCTA+GGG 0.626738 1.4:+80218394 None:intergenic
CAGGTGCATTATGAAACCAC+TGG 0.627492 1.4:-80219647 MS.gene26887:CDS
AAGACTAACATCCAATACCC+CGG 0.628506 1.4:+80219184 None:intergenic
TCCTGCAAAGGGAATGAAAG+GGG 0.649085 1.4:-80219839 MS.gene26887:CDS
GTTAGTGGTATAGGGACTGG+TGG 0.649614 1.4:-80219581 MS.gene26887:CDS
AGATATGGAAAGGCACAGGA+GGG 0.656003 1.4:-80219619 MS.gene26887:CDS
ACTGGTCCAGAGATATGGAA+AGG 0.666229 1.4:-80219629 MS.gene26887:CDS
GAAAGTCCCGTTCTGTCCGG+AGG 0.669763 1.4:-80219348 MS.gene26887:CDS
GTTTGAATCGGTGAGACGGG+AGG 0.688551 1.4:-80218358 MS.gene26887:CDS
TTTATTCAGATATACTAACG+GGG 0.743072 1.4:+80220690 None:intergenic
CACCGATTCAAACAGCACAG+AGG 0.761759 1.4:+80218368 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAAAATGAAACAAAA+CGG + chr1.4:80219794-80219813 None:intergenic 10.0%
!!! ATAAAAATATTTTGAATATC+TGG - chr1.4:80220697-80220716 MS.gene26887:CDS 10.0%
!! ATTTATAACATAAATTGCAA+AGG + chr1.4:80218695-80218714 None:intergenic 15.0%
!! TATAAAAAATGAAACAAAAC+GGG + chr1.4:80219793-80219812 None:intergenic 15.0%
!!! ATTTTATTCAGATATACTAA+CGG + chr1.4:80218505-80218524 None:intergenic 15.0%
!! AGTATATCTGAATAAAATCA+CGG - chr1.4:80218507-80218526 MS.gene26887:intron 20.0%
!! ATTAAAGATAACCTTGATAT+TGG + chr1.4:80219676-80219695 None:intergenic 20.0%
!! CAACTATACAAAATAAACAA+CGG + chr1.4:80218470-80218489 None:intergenic 20.0%
!! GCAATTTATGTTATAAATGT+AGG - chr1.4:80218697-80218716 MS.gene26887:intron 20.0%
!! TAAAACAATATTCATAGTAG+AGG + chr1.4:80220566-80220585 None:intergenic 20.0%
!! TAATTAAATGTTTCTTACTG+TGG - chr1.4:80218429-80218448 MS.gene26887:intron 20.0%
!! TGTTAAATTATTTGAGAGAA+TGG + chr1.4:80220119-80220138 None:intergenic 20.0%
!! TTATGTTATAAATGTAGGAT+TGG - chr1.4:80218702-80218721 MS.gene26887:intron 20.0%
!!! ATGTGAATGTAATTTTTAGA+AGG - chr1.4:80220242-80220261 MS.gene26887:intron 20.0%
!!! CTTGTATATTATTTGAGTTT+TGG - chr1.4:80218618-80218637 MS.gene26887:intron 20.0%
!!! GTTTATTTTGTATAGTTGAT+CGG - chr1.4:80218472-80218491 MS.gene26887:intron 20.0%
!!! TCATTATTTTGCCATTTTTT+TGG - chr1.4:80220277-80220296 MS.gene26887:intron 20.0%
!!! TCTACTATGAATATTGTTTT+AGG - chr1.4:80220565-80220584 MS.gene26887:intron 20.0%
!!! TGACAATTTTCAATATGATA+TGG - chr1.4:80220760-80220779 MS.gene26887:intron 20.0%
!!! TTTTATTCAGATATACTAAC+GGG + chr1.4:80218504-80218523 None:intergenic 20.0%
! AGATTAAAATGAAAGTTCGT+AGG - chr1.4:80218792-80218811 MS.gene26887:intron 25.0%
! ATTGTAGATTTCTTAAATCC+TGG - chr1.4:80220171-80220190 MS.gene26887:intron 25.0%
! GAGAAATACTAGTACTAATT+TGG - chr1.4:80218939-80218958 MS.gene26887:intron 25.0%
! GGATTTAAGAAATCTACAAT+TGG + chr1.4:80220171-80220190 None:intergenic 25.0%
! GGTATGTTATAGGAAAAAAA+GGG - chr1.4:80220727-80220746 MS.gene26887:intron 25.0%
! TACAAAAGATTGTGAAATAG+CGG + chr1.4:80219049-80219068 None:intergenic 25.0%
! TGAATACTAGGAAATATGAT+AGG - chr1.4:80218913-80218932 MS.gene26887:intron 25.0%
! TGGTATGTTATAGGAAAAAA+AGG - chr1.4:80220726-80220745 MS.gene26887:intron 25.0%
! TTTATTCAGATATACTAACG+GGG + chr1.4:80218503-80218522 None:intergenic 25.0%
!! AAGTTCTTATTTCAACTGTA+AGG + chr1.4:80219899-80219918 None:intergenic 25.0%
!! CAACTTTTATGTTGAATACT+AGG - chr1.4:80218901-80218920 MS.gene26887:intron 25.0%
!! TTTTATATTATGCAGCTGTA+TGG - chr1.4:80219806-80219825 MS.gene26887:CDS 25.0%
!!! AATTTTTAGAAGGATGATGA+TGG - chr1.4:80220252-80220271 MS.gene26887:intron 25.0%
!!! CTATGAATATTGTTTTAGGT+TGG - chr1.4:80220569-80220588 MS.gene26887:intron 25.0%
AAAATGAAAGTTCGTAGGAT+TGG - chr1.4:80218797-80218816 MS.gene26887:CDS 30.0%
AAACAGTGTTATAACTAACC+AGG + chr1.4:80219872-80219891 None:intergenic 30.0%
ACAAAATAGATAGCTCTTAG+AGG + chr1.4:80220466-80220485 None:intergenic 30.0%
ACTCACTTCTGTAATATCTT+TGG + chr1.4:80218360-80218379 None:intergenic 30.0%
ACTCATTTGTTCTACAACTT+TGG - chr1.4:80219467-80219486 MS.gene26887:intron 30.0%
AGAGGTTTAGACTTACAAAT+AGG + chr1.4:80220412-80220431 None:intergenic 30.0%
AGATGAATAAGTGCAAGATT+TGG - chr1.4:80219721-80219740 MS.gene26887:intron 30.0%
AGTGTTATCACAGAAAATAG+TGG - chr1.4:80218987-80219006 MS.gene26887:intron 30.0%
ATAAATACCAGTGATCAGTT+TGG + chr1.4:80219149-80219168 None:intergenic 30.0%
ATCTGTCAAATCACACAATA+AGG + chr1.4:80220338-80220357 None:intergenic 30.0%
ATGAAACAAAACGGGAAATT+AGG + chr1.4:80219785-80219804 None:intergenic 30.0%
ATTTGCCATGATAAATGTCT+AGG - chr1.4:80219945-80219964 MS.gene26887:CDS 30.0%
CAAAATAAACAACGGACATT+AGG + chr1.4:80218462-80218481 None:intergenic 30.0%
GAAATGATTACTGTTGTACT+TGG - chr1.4:80220526-80220545 MS.gene26887:intron 30.0%
GTTATCATCGTTGTATTTAC+AGG - chr1.4:80219524-80219543 MS.gene26887:intron 30.0%
GTTTCTTAGTTCATTATCAC+TGG - chr1.4:80218963-80218982 MS.gene26887:intron 30.0%
TACAAATAGGCCTTCTTTAA+GGG + chr1.4:80220399-80220418 None:intergenic 30.0%
TAGAAAATCCAACACAATTG+AGG - chr1.4:80220432-80220451 MS.gene26887:intron 30.0%
TATCTGAATAAAATCACGGA+TGG - chr1.4:80218511-80218530 MS.gene26887:intron 30.0%
TATTTAACCAAACTGATCAC+TGG - chr1.4:80219139-80219158 MS.gene26887:intron 30.0%
TGTAGAACAAATGAGTAGAT+AGG + chr1.4:80219463-80219482 None:intergenic 30.0%
TTAACGATGTATAGTTCATC+TGG + chr1.4:80218867-80218886 None:intergenic 30.0%
TTACAAATAGGCCTTCTTTA+AGG + chr1.4:80220400-80220419 None:intergenic 30.0%
TTCAAATTGCTGAAGGATAT+AGG + chr1.4:80219419-80219438 None:intergenic 30.0%
TTGTACTAAATAGTGCATCA+CGG - chr1.4:80219064-80219083 MS.gene26887:intron 30.0%
! ATGCATTTGTTAGTGGTATA+GGG - chr1.4:80219601-80219620 MS.gene26887:CDS 30.0%
! ATTGTGTTGGATTTTCTAAG+AGG + chr1.4:80220430-80220449 None:intergenic 30.0%
! TCTACAACTTTGGTAGTTAA+TGG - chr1.4:80219477-80219496 MS.gene26887:intron 30.0%
! TTTTCAATATGATATGGTGC+AGG - chr1.4:80220766-80220785 MS.gene26887:intron 30.0%
!! AAAGTTGATGCATTTGTTAG+TGG - chr1.4:80219594-80219613 MS.gene26887:CDS 30.0%
!! TATTTGAGAGAATGGTTTTG+TGG + chr1.4:80220111-80220130 None:intergenic 30.0%
!! TTTATTACTGGCTTCCTAAA+AGG - chr1.4:80220074-80220093 MS.gene26887:intron 30.0%
!!! GCTGCTTTAGTTTTTATTAC+TGG - chr1.4:80220062-80220081 MS.gene26887:intron 30.0%
!!! TTTTAGGTTGGAATATCATC+TGG - chr1.4:80220581-80220600 MS.gene26887:intron 30.0%
AATGAGTAGATAGGTACCTT+TGG + chr1.4:80219454-80219473 None:intergenic 35.0%
AATGATAAGCTTGTAGCCTT+TGG + chr1.4:80219257-80219276 None:intergenic 35.0%
AGAGCAGAATTCCAATATCA+AGG - chr1.4:80219662-80219681 MS.gene26887:intron 35.0%
ATAAAAACTAAAGCAGCACC+TGG + chr1.4:80220059-80220078 None:intergenic 35.0%
ATATTTCCCAACACCTGTTA+TGG + chr1.4:80219637-80219656 None:intergenic 35.0%
ATCTTTAACAAGTACCAACC+TGG + chr1.4:80218776-80218795 None:intergenic 35.0%
CACATGATAAGTGTGTATTG+TGG + chr1.4:80220227-80220246 None:intergenic 35.0%
CTCACAGATGTCCAAAAAAA+TGG + chr1.4:80220291-80220310 None:intergenic 35.0%
GGTATTTATGTTGTTGCATG+CGG - chr1.4:80219160-80219179 MS.gene26887:intron 35.0%
TAAAAACTAAAGCAGCACCT+GGG + chr1.4:80220058-80220077 None:intergenic 35.0%
TAGTTAATGGTTGGCAACTT+TGG - chr1.4:80219490-80219509 MS.gene26887:intron 35.0%
TATTCATCTTAGTGTTGTCG+AGG + chr1.4:80219710-80219729 None:intergenic 35.0%
TGCGTAAGATTTAGTAAACC+AGG + chr1.4:80220192-80220211 None:intergenic 35.0%
TGGTTCCATTAATTCCAGTT+TGG + chr1.4:80218557-80218576 None:intergenic 35.0%
! AGAACCATTCTTCTCTCTTT+TGG - chr1.4:80219307-80219326 MS.gene26887:intron 35.0%
! ATAAGCTTTCCAGCATTTTC+TGG + chr1.4:80220644-80220663 None:intergenic 35.0%
! CAACTTTGGTAGTTAATGGT+TGG - chr1.4:80219481-80219500 MS.gene26887:intron 35.0%
! CGAGCAACATTCTTTTGAAT+TGG - chr1.4:80218653-80218672 MS.gene26887:intron 35.0%
! GATGCATTTGTTAGTGGTAT+AGG - chr1.4:80219600-80219619 MS.gene26887:CDS 35.0%
! TTTTGAATATCTGGCACAGT+TGG - chr1.4:80220706-80220725 MS.gene26887:CDS 35.0%
!! TGGTCGTTTTGCTATCTTAA+TGG + chr1.4:80220624-80220643 None:intergenic 35.0%
!!! AGAGAATGGTTTTGTGGTAA+GGG + chr1.4:80220105-80220124 None:intergenic 35.0%
AAAAACTAAAGCAGCACCTG+GGG + chr1.4:80220057-80220076 None:intergenic 40.0%
AAGACTAACATCCAATACCC+CGG + chr1.4:80220009-80220028 None:intergenic 40.0%
AAGCTTCTTGCCCTTAAAGA+AGG - chr1.4:80220386-80220405 MS.gene26887:intron 40.0%
AGCTCCAAAAGAGAGAAGAA+TGG + chr1.4:80219314-80219333 None:intergenic 40.0%
ATCCTGCAAAGGGAATGAAA+GGG - chr1.4:80219350-80219369 MS.gene26887:CDS 40.0%
ATTCAAACAGCACAGAGGAT+AGG + chr1.4:80220820-80220839 None:intergenic 40.0%
CAGAATAGCCTCAATTGTGT+TGG + chr1.4:80220443-80220462 None:intergenic 40.0%
CATGCTCTAGTGTAAAAGAC+AGG - chr1.4:80218575-80218594 MS.gene26887:CDS 40.0%
CTTTCAAGACTCATTGAAGC+AGG + chr1.4:80219286-80219305 None:intergenic 40.0%
GCTATAACACTGTTGCATAG+CGG + chr1.4:80219025-80219044 None:intergenic 40.0%
GTAATTCAAGTAAGTTCCCC+AGG - chr1.4:80220038-80220057 MS.gene26887:intron 40.0%
GTAGATAGGTACCTTTGGAT+TGG + chr1.4:80219449-80219468 None:intergenic 40.0%
GTGGACCTAGACATTTATCA+TGG + chr1.4:80219953-80219972 None:intergenic 40.0%
TAGGTCCACACAAGATTCAA+GGG - chr1.4:80219964-80219983 MS.gene26887:CDS 40.0%
TAGTATGATTGCTGATGCAG+AGG - chr1.4:80218728-80218747 MS.gene26887:intron 40.0%
TATTATGCAGCTGTATGGAG+TGG - chr1.4:80219811-80219830 MS.gene26887:CDS 40.0%
TGCTGAAGGATATAGGCATT+TGG + chr1.4:80219412-80219431 None:intergenic 40.0%
TGCTGCCAAACTGGAATTAA+TGG - chr1.4:80218549-80218568 MS.gene26887:CDS 40.0%
TTTGTTAGTGGTATAGGGAC+TGG - chr1.4:80219606-80219625 MS.gene26887:CDS 40.0%
! CAGGGTTTTCAAATTGCTGA+AGG + chr1.4:80219426-80219445 None:intergenic 40.0%
! CTGTCTTTTACACTAGAGCA+TGG + chr1.4:80218577-80218596 None:intergenic 40.0%
! GATATAGGCATTTGGAGTCT+TGG + chr1.4:80219404-80219423 None:intergenic 40.0%
! TGGCACAGTTGGTATGTTAT+AGG - chr1.4:80220717-80220736 MS.gene26887:intron 40.0%
!! ATCCTCTGTGCTGTTTGAAT+CGG - chr1.4:80220820-80220839 MS.gene26887:intron 40.0%
!! TGGTAAGGGTTTAGCCTTTT+AGG + chr1.4:80220091-80220110 None:intergenic 40.0%
!!! GAGAGAATGGTTTTGTGGTA+AGG + chr1.4:80220106-80220125 None:intergenic 40.0%
AAACCACTGGTCCAGAGATA+TGG - chr1.4:80219556-80219575 MS.gene26887:CDS 45.0%
ACGGGAAATTAGGAGTAGAG+AGG + chr1.4:80219775-80219794 None:intergenic 45.0%
ACTGGTCCAGAGATATGGAA+AGG - chr1.4:80219561-80219580 MS.gene26887:CDS 45.0%
AGACTAACATCCAATACCCC+GGG + chr1.4:80220008-80220027 None:intergenic 45.0%
ATAGCAGCGCTATTGCTTAG+CGG + chr1.4:80219113-80219132 None:intergenic 45.0%
ATTGCTGATGCAGAGGAGAA+GGG - chr1.4:80218735-80218754 MS.gene26887:intron 45.0%
CAGGTGCATTATGAAACCAC+TGG - chr1.4:80219543-80219562 MS.gene26887:CDS 45.0%
CCAATCCCTTGAATCTTGTG+TGG + chr1.4:80219972-80219991 None:intergenic 45.0%
CCACACAAGATTCAAGGGAT+TGG - chr1.4:80219969-80219988 MS.gene26887:CDS 45.0%
CTAGGTCCACACAAGATTCA+AGG - chr1.4:80219963-80219982 MS.gene26887:CDS 45.0%
GATCCTGCAAAGGGAATGAA+AGG - chr1.4:80219349-80219368 MS.gene26887:CDS 45.0%
GCAAAACGACCAGAAAATGC+TGG - chr1.4:80220632-80220651 MS.gene26887:CDS 45.0%
GTCCTTATTGAGCCAACAAG+TGG - chr1.4:80219196-80219215 MS.gene26887:CDS 45.0%
GTGGTACCATAACAGGTGTT+GGG - chr1.4:80219628-80219647 MS.gene26887:CDS 45.0%
TAACTAACCAGGCTTTCCTC+CGG + chr1.4:80219861-80219880 None:intergenic 45.0%
TCCTGCAAAGGGAATGAAAG+GGG - chr1.4:80219351-80219370 MS.gene26887:CDS 45.0%
TGAAAACCCTGCCAATCCAA+AGG - chr1.4:80219435-80219454 MS.gene26887:intron 45.0%
TGAGCCAACAAGTGGCAATA+CGG - chr1.4:80219204-80219223 MS.gene26887:CDS 45.0%
TTTCCATATCTCTGGACCAG+TGG + chr1.4:80219562-80219581 None:intergenic 45.0%
! AAGATTCAAGGGATTGGTGC+TGG - chr1.4:80219975-80219994 MS.gene26887:CDS 45.0%
! AGATATGGAAAGGCACAGGA+GGG - chr1.4:80219571-80219590 MS.gene26887:CDS 45.0%
! TGCTGTTTGAATCGGTGAGA+CGG - chr1.4:80220828-80220847 MS.gene26887:intron 45.0%
!! ATAGGTACCTTTGGATTGGC+AGG + chr1.4:80219445-80219464 None:intergenic 45.0%
!! CAGGTTGTTTTCCCTAGCTT+TGG - chr1.4:80220785-80220804 MS.gene26887:intron 45.0%
!! TAGGTACCTTTGGATTGGCA+GGG + chr1.4:80219444-80219463 None:intergenic 45.0%
!! TGCCACTTGTTGGCTCAATA+AGG + chr1.4:80219201-80219220 None:intergenic 45.0%
!!! ATTGGTGCTGGTTTTGTTCC+CGG - chr1.4:80219987-80220006 MS.gene26887:CDS 45.0%
!!! TCTCTCTTTTGGAGCTGAGT+TGG - chr1.4:80219318-80219337 MS.gene26887:intron 45.0%
!!! TTTTCCCTAGCTTTGGTGAG+AGG - chr1.4:80220792-80220811 MS.gene26887:intron 45.0%
!!! TATTTTTATCAAAATTTTTA+TGG + chr1.4:80220686-80220705 None:intergenic 5.0%
ACAAGTGGCAATACGGGCAT+CGG - chr1.4:80219211-80219230 MS.gene26887:CDS 50.0%
AGGTACCTCTCACCAAAGCT+AGG + chr1.4:80220800-80220819 None:intergenic 50.0%
CCTGTGCCTTTCCATATCTC+TGG + chr1.4:80219570-80219589 None:intergenic 50.0%
GACAGAACGGGACTTTCAAC+TGG + chr1.4:80219839-80219858 None:intergenic 50.0%
GAGAAGGGACTAATTACGCC+TGG - chr1.4:80218750-80218769 MS.gene26887:intron 50.0%
GAGCCAACAAGTGGCAATAC+GGG - chr1.4:80219205-80219224 MS.gene26887:CDS 50.0%
GATTGCTGATGCAGAGGAGA+AGG - chr1.4:80218734-80218753 MS.gene26887:intron 50.0%
GCTGTTTGAATCGGTGAGAC+GGG - chr1.4:80220829-80220848 MS.gene26887:intron 50.0%
GGTACCTCTCACCAAAGCTA+GGG + chr1.4:80220799-80220818 None:intergenic 50.0%
GGTGGTACCATAACAGGTGT+TGG - chr1.4:80219627-80219646 MS.gene26887:CDS 50.0%
GTTAGTGGTATAGGGACTGG+TGG - chr1.4:80219609-80219628 MS.gene26887:CDS 50.0%
GTTCTCACGGATCCTGCAAA+GGG - chr1.4:80219340-80219359 MS.gene26887:CDS 50.0%
GTTGAAAGTCCCGTTCTGTC+CGG - chr1.4:80219839-80219858 MS.gene26887:CDS 50.0%
TAACAAGTACCAACCTGGCC+AGG + chr1.4:80218771-80218790 None:intergenic 50.0%
TATCTTAATGGCAGCTGCCG+CGG + chr1.4:80220612-80220631 None:intergenic 50.0%
! AATATCATCTGGAGCTGCCG+CGG - chr1.4:80220592-80220611 MS.gene26887:intron 50.0%
! ATGCCCGTATTGCCACTTGT+TGG + chr1.4:80219211-80219230 None:intergenic 50.0%
! CCAGAGATATGGAAAGGCAC+AGG - chr1.4:80219567-80219586 MS.gene26887:CDS 50.0%
! GAGATATGGAAAGGCACAGG+AGG - chr1.4:80219570-80219589 MS.gene26887:CDS 50.0%
!! CACCGATTCAAACAGCACAG+AGG + chr1.4:80220825-80220844 None:intergenic 50.0%
!! TGGAGCTGAGTTGGTTCTCA+CGG - chr1.4:80219327-80219346 MS.gene26887:intron 50.0%
!!! TGGTTTTGTTCCCGGGGTAT+TGG - chr1.4:80219995-80220014 MS.gene26887:CDS 50.0%
!!! TTGGTGCTGGTTTTGTTCCC+GGG - chr1.4:80219988-80220007 MS.gene26887:CDS 50.0%
AGGCTTTCCTCCGGACAGAA+CGG + chr1.4:80219852-80219871 None:intergenic 55.0%
CTAATTACGCCTGGCCAGGT+TGG - chr1.4:80218759-80218778 MS.gene26887:intron 55.0%
GCCCCTTTCATTCCCTTTGC+AGG + chr1.4:80219355-80219374 None:intergenic 55.0%
GGTTCTCACGGATCCTGCAA+AGG - chr1.4:80219339-80219358 MS.gene26887:intron 55.0%
GTTTGAATCGGTGAGACGGG+AGG - chr1.4:80220832-80220851 MS.gene26887:intron 55.0%
! GGGACTGGTGGTACCATAAC+AGG - chr1.4:80219621-80219640 MS.gene26887:CDS 55.0%
! TGCTCGAGTTGCTGCCAAAC+TGG - chr1.4:80218540-80218559 MS.gene26887:intron 55.0%
!! TGGCAATACGGGCATCGGAT+TGG - chr1.4:80219216-80219235 MS.gene26887:CDS 55.0%
!!! TGGTGCTGGTTTTGTTCCCG+GGG - chr1.4:80219989-80220008 MS.gene26887:CDS 55.0%
GAAAGTCCCGTTCTGTCCGG+AGG - chr1.4:80219842-80219861 MS.gene26887:CDS 60.0%
GCCTTCTTGGCAGCAGCCAA+AGG - chr1.4:80219238-80219257 MS.gene26887:intron 60.0%
GCCTTTGGCTGCTGCCAAGA+AGG + chr1.4:80219242-80219261 None:intergenic 60.0%
GGCTTTCCTCCGGACAGAAC+GGG + chr1.4:80219851-80219870 None:intergenic 60.0%
GGGACTAATTACGCCTGGCC+AGG - chr1.4:80218755-80218774 MS.gene26887:intron 60.0%
GTTCTGTCCGGAGGAAAGCC+TGG - chr1.4:80219851-80219870 MS.gene26887:CDS 60.0%
!! GGGCATCGGATTGGCCTTCT+TGG - chr1.4:80219225-80219244 MS.gene26887:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 80218332 80220880 80218332 ID=MS.gene26887
chr1.4 mRNA 80218332 80220880 80218332 ID=MS.gene26887.t1;Parent=MS.gene26887
chr1.4 exon 80220839 80220880 80220839 ID=MS.gene26887.t1.exon1;Parent=MS.gene26887.t1
chr1.4 CDS 80220839 80220880 80220839 ID=cds.MS.gene26887.t1;Parent=MS.gene26887.t1
chr1.4 exon 80220616 80220725 80220616 ID=MS.gene26887.t1.exon2;Parent=MS.gene26887.t1
chr1.4 CDS 80220616 80220725 80220616 ID=cds.MS.gene26887.t1;Parent=MS.gene26887.t1
chr1.4 exon 80220436 80220493 80220436 ID=MS.gene26887.t1.exon3;Parent=MS.gene26887.t1
chr1.4 CDS 80220436 80220493 80220436 ID=cds.MS.gene26887.t1;Parent=MS.gene26887.t1
chr1.4 exon 80219756 80220019 80219756 ID=MS.gene26887.t1.exon4;Parent=MS.gene26887.t1
chr1.4 CDS 80219756 80220019 80219756 ID=cds.MS.gene26887.t1;Parent=MS.gene26887.t1
chr1.4 exon 80219529 80219666 80219529 ID=MS.gene26887.t1.exon5;Parent=MS.gene26887.t1
chr1.4 CDS 80219529 80219666 80219529 ID=cds.MS.gene26887.t1;Parent=MS.gene26887.t1
chr1.4 exon 80219340 80219391 80219340 ID=MS.gene26887.t1.exon6;Parent=MS.gene26887.t1
chr1.4 CDS 80219340 80219391 80219340 ID=cds.MS.gene26887.t1;Parent=MS.gene26887.t1
chr1.4 exon 80219166 80219245 80219166 ID=MS.gene26887.t1.exon7;Parent=MS.gene26887.t1
chr1.4 CDS 80219166 80219245 80219166 ID=cds.MS.gene26887.t1;Parent=MS.gene26887.t1
chr1.4 exon 80218797 80218856 80218797 ID=MS.gene26887.t1.exon8;Parent=MS.gene26887.t1
chr1.4 CDS 80218797 80218856 80218797 ID=cds.MS.gene26887.t1;Parent=MS.gene26887.t1
chr1.4 exon 80218545 80218625 80218545 ID=MS.gene26887.t1.exon9;Parent=MS.gene26887.t1
chr1.4 CDS 80218545 80218625 80218545 ID=cds.MS.gene26887.t1;Parent=MS.gene26887.t1
chr1.4 exon 80218332 80218424 80218332 ID=MS.gene26887.t1.exon10;Parent=MS.gene26887.t1
chr1.4 CDS 80218332 80218424 80218332 ID=cds.MS.gene26887.t1;Parent=MS.gene26887.t1
Gene Sequence

>MS.gene26887

ATGGCAGTTGAAAGGTCTGGAATAGCCAAAGATATTACAGAAGTGAGTCTGTGTATTTTGATGACATTTTGTGTGATATTTTAATGTGTTTTCTTTCTAATTAAATGTTTCTTACTGTGGATTACATCCTAATGTCCGTTGTTTATTTTGTATAGTTGATCGGAAAAACCCCGTTAGTATATCTGAATAAAATCACGGATGGTTCTGTTGCTCGAGTTGCTGCCAAACTGGAATTAATGGAACCATGCTCTAGTGTAAAAGACAGGTAATTTCTTACAATAGTGCTCTTGTATATTATTTGAGTTTTGGTTCTTGCTTTTGCGAGCAACATTCTTTTGAATTGGCTTGTGACTTTTTTCGCCTTTGCAATTTATGTTATAAATGTAGGATTGGCTATAGTATGATTGCTGATGCAGAGGAGAAGGGACTAATTACGCCTGGCCAGGTTGGTACTTGTTAAAGATTAAAATGAAAGTTCGTAGGATTGGTCATTGAAAGTGATGCTTCTAACAAATTAGCAGTTGTTTAAATTCCAGATGAACTATACATCGTTAATTTAGTTTCTGCGACAACTTTTATGTTGAATACTAGGAAATATGATAGGTGAGAGAAATACTAGTACTAATTTGGTGTTTCTTAGTTCATTATCACTGGCAGTGTTATCACAGAAAATAGTGGTTTGTTCAAATTCCGCTATGCAACAGTGTTATAGCGCCGCTATTTCACAATCTTTTGTACTAAATAGTGCATCACGGAACAATAGCACTTCGTTCAAATTCCGCTAAGCAATAGCGCTGCTATAGCTATTATTTAACCAAACTGATCACTGGTATTTATGTTGTTGCATGCGGACTATTGAAGAGTGTCCTTATTGAGCCAACAAGTGGCAATACGGGCATCGGATTGGCCTTCTTGGCAGCAGCCAAAGGCTACAAGCTTATCATTACAATGCCTGCTTCAATGAGTCTTGAAAGAAGAACCATTCTTCTCTCTTTTGGAGCTGAGTTGGTTCTCACGGATCCTGCAAAGGGAATGAAAGGGGCAGTTCAGAAAGCTGAAGAGATATTAGCCAAGACTCCAAATGCCTATATCCTTCAGCAATTTGAAAACCCTGCCAATCCAAAGGTACCTATCTACTCATTTGTTCTACAACTTTGGTAGTTAATGGTTGGCAACTTTGGATGACACATTTGTTATCATCGTTGTATTTACAGGTGCATTATGAAACCACTGGTCCAGAGATATGGAAAGGCACAGGAGGGAAAGTTGATGCATTTGTTAGTGGTATAGGGACTGGTGGTACCATAACAGGTGTTGGGAAATATCTTAAAGAGCAGAATTCCAATATCAAGGTTATCTTTAATTTTTCTATTTTCCTCGACAACACTAAGATGAATAAGTGCAAGATTTGGTTCTGATTTATAGCTGTAGTTATGCTCTCCTCTCTACTCCTAATTTCCCGTTTTGTTTCATTTTTTATATTATGCAGCTGTATGGAGTGGAGCCAGTTGAAAGTCCCGTTCTGTCCGGAGGAAAGCCTGGTTAGTTATAACACTGTTTTGTTCCTTACAGTTGAAATAAGAACTTACTTTTGAAGCTGTTGCTGATGTGCAATTTGCCATGATAAATGTCTAGGTCCACACAAGATTCAAGGGATTGGTGCTGGTTTTGTTCCCGGGGTATTGGATGTTAGTCTTGTCGACGAAGTAATTCAAGTAAGTTCCCCAGGTGCTGCTTTAGTTTTTATTACTGGCTTCCTAAAAGGCTAAACCCTTACCACAAAACCATTCTCTCAAATAATTTAACAGTTAAAGTTTGTAGAGAATGCACAAAAAGCCAATTGTAGATTTCTTAAATCCTGGTTTACTAAATCTTACGCACTGACTATTGTGCCACAATACACACTTATCATGTGAATGTAATTTTTAGAAGGATGATGATGGTGTCATTATTTTGCCATTTTTTTGGACATCTGTGAGACTGACAATTTATAATTTGTTAAACCTTATTGTGTGATTTGACAGATATCAAGTGATGAAGCAATAGAAACTGCAAAGCTTCTTGCCCTTAAAGAAGGCCTATTTGTAAGTCTAAACCTCTTAGAAAATCCAACACAATTGAGGCTATTCTGCCTCTAAGAGCTATCTATTTTGTTCTCTTTCGTGACTCATATTCAAATTTGTTAAACAAATAAGAAATGATTACTGTTGTACTTGGATTGATTTGTTGAGCCTCTACTATGAATATTGTTTTAGGTTGGAATATCATCTGGAGCTGCCGCGGCAGCTGCCATTAAGATAGCAAAACGACCAGAAAATGCTGGAAAGCTTATTGTTGTAAGTTGATTGAATCCATAAAAATTTTGATAAAAATATTTTGAATATCTGGCACAGTTGGTATGTTATAGGAAAAAAAGGGTTTACATCATTGACAATTTTCAATATGATATGGTGCAGGTTGTTTTCCCTAGCTTTGGTGAGAGGTACCTATCCTCTGTGCTGTTTGAATCGGTGAGACGGGAGGCTGAAAGCCTGACTTTTGAACCATGA

Protein sequence

>MS.gene26887.t1

MAVERSGIAKDITELIGKTPLVYLNKITDGSVARVAAKLELMEPCSSVKDRIGYSMIADAEEKGLITPGQSVLIEPTSGNTGIGLAFLAAAKGYKLIITMPASMSLERRTILLSFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYILQQFENPANPKVHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGVGKYLKEQNSNIKLYGVEPVESPVLSGGKPGPHKIQGIGAGFVPGVLDVSLVDEVIQISSDEAIETAKLLALKEGLFVGISSGAAAAAAIKIAKRPENAGKLIVVVFPSFGERYLSSVLFESVRREAESLTFEP