Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28059.t1 | XP_013446785.1 | 91.5 | 258 | 18 | 1 | 1 | 258 | 1 | 254 | 1.40E-127 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28059.t1 | A0A072TTP9 | 91.5 | 258 | 18 | 1 | 1 | 258 | 1 | 254 | 9.8e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene28059 | 0.804197 | 2.42E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene28059 | 0.804771 | 1.84E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene28059 | 0.819878 | 9.22E-53 | -1.69E-46 |
| MS.gene052609 | MS.gene28059 | 0.814979 | 1.17E-51 | -1.69E-46 |
| MS.gene05350 | MS.gene28059 | 0.812228 | 4.71E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene28059 | 0.815117 | 1.09E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene28059 | 0.80234 | 5.88E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene28059 | 0.821902 | 3.15E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene28059 | 0.802206 | 6.26E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene28059 | 0.812575 | 3.96E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene28059 | 0.80242 | 5.66E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene28059 | 0.807164 | 5.78E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene28059 | 0.821242 | 4.48E-53 | -1.69E-46 |
| MS.gene060840 | MS.gene28059 | 0.807128 | 5.88E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene28059 | 0.807211 | 5.65E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene28059 | 0.808149 | 3.57E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28059.t1 | MTR_8g090105 | 91.473 | 258 | 18 | 1 | 1 | 258 | 1 | 254 | 1.40e-173 | 482 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28059.t1 | AT3G57360 | 46.087 | 230 | 114 | 5 | 34 | 261 | 21 | 242 | 9.38e-64 | 202 |
| MS.gene28059.t1 | AT3G02370 | 44.388 | 196 | 102 | 3 | 64 | 258 | 1 | 190 | 4.59e-53 | 173 |
| MS.gene28059.t1 | AT3G02370 | 44.388 | 196 | 102 | 3 | 64 | 258 | 1 | 190 | 4.59e-53 | 173 |
| MS.gene28059.t1 | AT3G02370 | 44.388 | 196 | 102 | 3 | 64 | 258 | 1 | 190 | 4.59e-53 | 173 |
| MS.gene28059.t1 | AT3G02370 | 44.848 | 165 | 85 | 2 | 64 | 227 | 1 | 160 | 6.43e-45 | 151 |
Find 71 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAACTGGATTGTGATTT+TGG | 0.090434 | 4.4:+10876777 | MS.gene28059:CDS |
| AAGTCTCTCGGCTACATAAT+TGG | 0.212462 | 4.4:+10875433 | MS.gene28059:CDS |
| GACAAGCACAGCAGAAAATT+TGG | 0.239630 | 4.4:-10875673 | None:intergenic |
| GAAATGTACGAAAAGGTTTC+TGG | 0.246659 | 4.4:+10875361 | MS.gene28059:CDS |
| TTAACATGGCAGGTATCTTA+TGG | 0.254358 | 4.4:+10875285 | MS.gene28059:intron |
| CTCTTCATTCCATCTGGCTT+TGG | 0.257942 | 4.4:-10874910 | None:intergenic |
| CTTTCCATAAGTAAGTTATT+TGG | 0.268545 | 4.4:+10875568 | MS.gene28059:CDS |
| CTTTGCCCAAATCGCAATTC+AGG | 0.274999 | 4.4:+10874117 | MS.gene28059:CDS |
| CTCACCAAATAACTTACTTA+TGG | 0.296788 | 4.4:-10875572 | None:intergenic |
| TTTGACCTGAATTGCGATTT+GGG | 0.324555 | 4.4:-10874122 | None:intergenic |
| TCCCGTCTCTTCATTCCATC+TGG | 0.371047 | 4.4:-10874916 | None:intergenic |
| GCTTCAATTTCTTCTCTAGA+AGG | 0.386301 | 4.4:-10876490 | None:intergenic |
| ATGATAACCTGCGCTACAAA+TGG | 0.392220 | 4.4:+10876744 | MS.gene28059:CDS |
| GGAAGATAAATATCAAAATC+TGG | 0.393325 | 4.4:-10875616 | None:intergenic |
| ACTTATGGAAAGCTCGACTT+TGG | 0.418825 | 4.4:-10875557 | None:intergenic |
| AGTCTCTCGGCTACATAATT+GGG | 0.429657 | 4.4:+10875434 | MS.gene28059:CDS |
| AGCAGAAAATTTGGATCACC+TGG | 0.456168 | 4.4:-10875664 | None:intergenic |
| TTTATGATGTTATAGACGAC+AGG | 0.459378 | 4.4:+10876892 | MS.gene28059:CDS |
| TTCGCTGTCTACGAGATGTA+AGG | 0.463920 | 4.4:-10875317 | None:intergenic |
| CAGGAAGACCGGATGTTGTT+GGG | 0.466673 | 4.4:+10875384 | MS.gene28059:CDS |
| GGGAGCTGTTCGAGGCCTAC+AGG | 0.479326 | 4.4:+10875404 | MS.gene28059:CDS |
| GAACAGCTCCCAACAACATC+CGG | 0.481581 | 4.4:-10875392 | None:intergenic |
| ATGTTGTTGGGAGCTGTTCG+AGG | 0.483585 | 4.4:+10875396 | MS.gene28059:CDS |
| GCAGAGGTTATTGAGAAGAA+TGG | 0.485595 | 4.4:+10874942 | MS.gene28059:CDS |
| TGGGCTCAGTGATCACAAAC+TGG | 0.485634 | 4.4:+10876764 | MS.gene28059:CDS |
| GCAGGAAGACCGGATGTTGT+TGG | 0.493458 | 4.4:+10875383 | MS.gene28059:CDS |
| TATAATAGAAATGTACGAAA+AGG | 0.493873 | 4.4:+10875354 | MS.gene28059:CDS |
| AAGGTTTCTGGCAGGAAGAC+CGG | 0.499823 | 4.4:+10875373 | MS.gene28059:CDS |
| TTGGGCGGCATAATGTTGCT+TGG | 0.506016 | 4.4:+10875452 | MS.gene28059:CDS |
| TGATAACCTGCGCTACAAAT+GGG | 0.525231 | 4.4:+10876745 | MS.gene28059:CDS |
| ACTGAGCCCATTTGTAGCGC+AGG | 0.527267 | 4.4:-10876751 | None:intergenic |
| AGCCAGATGGAATGAAGAGA+CGG | 0.543553 | 4.4:+10874914 | MS.gene28059:CDS |
| ATTAATGGAAGGAAACAAGT+GGG | 0.544553 | 4.4:+10873986 | None:intergenic |
| TGAAGAGACGGGAATGGCAG+AGG | 0.546387 | 4.4:+10874926 | MS.gene28059:CDS |
| ATGGAATGAAGAGACGGGAA+TGG | 0.547529 | 4.4:+10874920 | MS.gene28059:CDS |
| GTGACGAAGAAGACGACCTT+CGG | 0.550279 | 4.4:+10874081 | MS.gene28059:CDS |
| GTGACCAGGCAGACTTTCAA+CGG | 0.557808 | 4.4:-10876538 | None:intergenic |
| GCCAGATGGAATGAAGAGAC+GGG | 0.562054 | 4.4:+10874915 | MS.gene28059:CDS |
| AGGTTCAGAAAATCTTCTCC+AGG | 0.564329 | 4.4:+10875646 | MS.gene28059:CDS |
| GATTCCGTTGAAAGTCTGCC+TGG | 0.568623 | 4.4:+10876534 | MS.gene28059:CDS |
| TGACCCTTCCTTCTGTGACC+AGG | 0.571599 | 4.4:-10876552 | None:intergenic |
| TCTGCCTGGTCACAGAAGGA+AGG | 0.572718 | 4.4:+10876548 | MS.gene28059:CDS |
| ACAACATCACAATCACCTGC+AGG | 0.573998 | 4.4:-10876816 | None:intergenic |
| AAGCAAACAAATAGTAGACA+TGG | 0.583081 | 4.4:+10875531 | MS.gene28059:CDS |
| AAAGTCTGCCTGGTCACAGA+AGG | 0.586148 | 4.4:+10876544 | MS.gene28059:CDS |
| ACGTCAAATCCAAAGCCAGA+TGG | 0.589896 | 4.4:+10874901 | MS.gene28059:CDS |
| ATATTTATCTTCCAGACAGT+AGG | 0.589908 | 4.4:+10875626 | MS.gene28059:CDS |
| CTCTCGGCTACATAATTGGG+CGG | 0.591627 | 4.4:+10875437 | MS.gene28059:CDS |
| GGCAGGTATCTTATGGAACT+AGG | 0.593964 | 4.4:+10875292 | MS.gene28059:intron |
| TACAGGCACCTCAAGTCTCT+CGG | 0.595258 | 4.4:+10875421 | MS.gene28059:CDS |
| CAAAGTGATCACAAACCTGC+AGG | 0.595322 | 4.4:+10876801 | MS.gene28059:CDS |
| CTGCCTGGTCACAGAAGGAA+GGG | 0.602851 | 4.4:+10876549 | MS.gene28059:CDS |
| GATTAATGGAAGGAAACAAG+TGG | 0.610317 | 4.4:+10873985 | None:intergenic |
| TGTACGAAAAGGTTTCTGGC+AGG | 0.610565 | 4.4:+10875365 | MS.gene28059:CDS |
| TAGCAAGAAACTGAAGGCAA+TGG | 0.614766 | 4.4:+10876845 | MS.gene28059:CDS |
| AAAGAAAGCTGTGGAAGTTG+TGG | 0.630880 | 4.4:+10876719 | MS.gene28059:intron |
| CAAGATTTATACTTCAATCG+AGG | 0.638560 | 4.4:+10875001 | MS.gene28059:CDS |
| GCTCTTGAGAAACAATGTGT+GGG | 0.640117 | 4.4:+10876511 | MS.gene28059:CDS |
| AATAATGTGAAAGAAAGCTG+TGG | 0.640180 | 4.4:+10876710 | MS.gene28059:intron |
| CTCTTGAGAAACAATGTGTG+GGG | 0.646122 | 4.4:+10876512 | MS.gene28059:CDS |
| AGCAAACAAATAGTAGACAT+GGG | 0.646880 | 4.4:+10875532 | MS.gene28059:CDS |
| GAGAGACTTGAGGTGCCTGT+AGG | 0.647949 | 4.4:-10875419 | None:intergenic |
| AAGAATGAGATGTGAACCGA+AGG | 0.649324 | 4.4:-10874097 | None:intergenic |
| TGAACATAGCAAGAAACTGA+AGG | 0.649845 | 4.4:+10876839 | MS.gene28059:CDS |
| TTATGTAGCCGAGAGACTTG+AGG | 0.655821 | 4.4:-10875429 | None:intergenic |
| GTCTATAACATCATAAACTG+AGG | 0.658331 | 4.4:-10876886 | None:intergenic |
| GACAGGGTAATGATCACTTG+AGG | 0.674001 | 4.4:+10876909 | MS.gene28059:CDS |
| TTATGATGTTATAGACGACA+GGG | 0.676597 | 4.4:+10876893 | MS.gene28059:CDS |
| TTAATGGAAGGAAACAAGTG+GGG | 0.680860 | 4.4:+10873987 | None:intergenic |
| AGCTCTTGAGAAACAATGTG+TGG | 0.694534 | 4.4:+10876510 | MS.gene28059:CDS |
| TCTACTGGAATAGTTCGTAG+TGG | 0.695795 | 4.4:+10874978 | MS.gene28059:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATTTATAGAAAACTA+TGG | - | chr4.4:10875120-10875139 | None:intergenic | 10.0% |
| !!! | CAATAAATATATATTTTCTA+TGG | - | chr4.4:10874372-10874391 | None:intergenic | 10.0% |
| !!! | TACATAGATTTTTTTTTTAA+TGG | - | chr4.4:10875771-10875790 | None:intergenic | 10.0% |
| !! | AGAAACAAATTTAATACTTA+GGG | + | chr4.4:10876226-10876245 | MS.gene28059:intron | 15.0% |
| !! | AGTAAATGATTGTTAATAAA+CGG | + | chr4.4:10874486-10874505 | MS.gene28059:intron | 15.0% |
| !! | ATAAGATATATACAAAAACA+TGG | - | chr4.4:10875046-10875065 | None:intergenic | 15.0% |
| !!! | TTAAGTTGTTTATAGAAAAA+TGG | - | chr4.4:10874150-10874169 | None:intergenic | 15.0% |
| !!! | TTAATCTAGAAACATATTTT+GGG | - | chr4.4:10876098-10876117 | None:intergenic | 15.0% |
| !!! | TTTTGGAAAATCTATTAATT+TGG | + | chr4.4:10876436-10876455 | MS.gene28059:intron | 15.0% |
| !! | AAGTATTTAAGCATACATTA+TGG | + | chr4.4:10876291-10876310 | MS.gene28059:intron | 20.0% |
| !! | ACAAATGATAAATTAATGTC+AGG | + | chr4.4:10874597-10874616 | MS.gene28059:intron | 20.0% |
| !! | GAGAAACAAATTTAATACTT+AGG | + | chr4.4:10876225-10876244 | MS.gene28059:intron | 20.0% |
| !! | GTAAATGATTGTTAATAAAC+GGG | + | chr4.4:10874487-10874506 | MS.gene28059:intron | 20.0% |
| !! | TATAATAGAAATGTACGAAA+AGG | + | chr4.4:10875354-10875373 | MS.gene28059:CDS | 20.0% |
| !! | TCAAATACTACAAATTCAAT+CGG | - | chr4.4:10874311-10874330 | None:intergenic | 20.0% |
| !! | TCTGAGAAAAATTATCTTTA+AGG | - | chr4.4:10876137-10876156 | None:intergenic | 20.0% |
| !!! | CATTAATTTATCATTTGTTG+TGG | - | chr4.4:10874595-10874614 | None:intergenic | 20.0% |
| !!! | CTTAATCTAGAAACATATTT+TGG | - | chr4.4:10876099-10876118 | None:intergenic | 20.0% |
| !!! | TGTTTGTGAAAATTTTAACA+TGG | + | chr4.4:10875271-10875290 | MS.gene28059:intron | 20.0% |
| ! | AAGAAACAAAGCTAATTGTT+TGG | - | chr4.4:10876346-10876365 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAATAGCTTA+TGG | + | chr4.4:10874654-10874673 | MS.gene28059:intron | 25.0% |
| ! | AGAAACAAAGCTAATTGTTT+GGG | - | chr4.4:10876345-10876364 | None:intergenic | 25.0% |
| ! | AGACAATAAATAAGCCAAAT+AGG | + | chr4.4:10875207-10875226 | MS.gene28059:intron | 25.0% |
| ! | ATAATTGATATCAACTGTTC+AGG | - | chr4.4:10876617-10876636 | None:intergenic | 25.0% |
| ! | ATAGCTGATAAACTAACTTA+AGG | + | chr4.4:10874240-10874259 | MS.gene28059:intron | 25.0% |
| ! | ATGATAGTAGAATAATCTGT+AGG | + | chr4.4:10876683-10876702 | MS.gene28059:intron | 25.0% |
| ! | ATTCATACTGATATGATTAG+AGG | - | chr4.4:10875714-10875733 | None:intergenic | 25.0% |
| ! | ATTTAATACTTAGGGTAAGA+AGG | + | chr4.4:10876234-10876253 | MS.gene28059:intron | 25.0% |
| ! | CAGTAGTAAGTAACTATTTA+CGG | - | chr4.4:10874811-10874830 | None:intergenic | 25.0% |
| ! | CTTTCCATAAGTAAGTTATT+TGG | + | chr4.4:10875568-10875587 | MS.gene28059:CDS | 25.0% |
| ! | GGAAGATAAATATCAAAATC+TGG | - | chr4.4:10875619-10875638 | None:intergenic | 25.0% |
| ! | TAATTGATATCAACTGTTCA+GGG | - | chr4.4:10876616-10876635 | None:intergenic | 25.0% |
| ! | TATACATATATGAGTCTGTT+TGG | - | chr4.4:10874564-10874583 | None:intergenic | 25.0% |
| ! | TGAAGCACATAAATTACAAT+AGG | - | chr4.4:10876174-10876193 | None:intergenic | 25.0% |
| ! | TTTAATACTTAGGGTAAGAA+GGG | + | chr4.4:10876235-10876254 | MS.gene28059:intron | 25.0% |
| ! | TTTATGCATGTAATCTGTTA+GGG | + | chr4.4:10876459-10876478 | MS.gene28059:intron | 25.0% |
| !! | GTAGTTATATTTTCTCTGTT+AGG | + | chr4.4:10876057-10876076 | MS.gene28059:intron | 25.0% |
| !! | TCTGACATTTAGATTTTAGA+AGG | + | chr4.4:10875068-10875087 | MS.gene28059:intron | 25.0% |
| !! | TTTTCTCTGTTAGGAATTTA+AGG | + | chr4.4:10876066-10876085 | MS.gene28059:intron | 25.0% |
| !!! | ACATTTAGATTTTAGAAGGA+GGG | + | chr4.4:10875072-10875091 | MS.gene28059:intron | 25.0% |
| !!! | GATTCAATGATGCATTTTTT+TGG | + | chr4.4:10875229-10875248 | MS.gene28059:intron | 25.0% |
| !!! | TTTTTTACATTTCATTCACC+AGG | + | chr4.4:10874877-10874896 | MS.gene28059:intron | 25.0% |
| AAGCAAACAAATAGTAGACA+TGG | + | chr4.4:10875531-10875550 | MS.gene28059:CDS | 30.0% | |
| AATAATGTGAAAGAAAGCTG+TGG | + | chr4.4:10876710-10876729 | MS.gene28059:intron | 30.0% | |
| ACAGCTTTCTTTCACATTAT+TGG | - | chr4.4:10876711-10876730 | None:intergenic | 30.0% | |
| ACCTGTTAAGTGTAAGAAAA+AGG | - | chr4.4:10876417-10876436 | None:intergenic | 30.0% | |
| AGCAAACAAATAGTAGACAT+GGG | + | chr4.4:10875532-10875551 | MS.gene28059:CDS | 30.0% | |
| ATATTTATCTTCCAGACAGT+AGG | + | chr4.4:10875626-10875645 | MS.gene28059:CDS | 30.0% | |
| ATCATATTTATGCCTCTGTT+TGG | + | chr4.4:10874211-10874230 | MS.gene28059:intron | 30.0% | |
| ATGCATCATTGAATCCTATT+TGG | - | chr4.4:10875224-10875243 | None:intergenic | 30.0% | |
| CAAGATTTATACTTCAATCG+AGG | + | chr4.4:10875001-10875020 | MS.gene28059:CDS | 30.0% | |
| CCTGTTAAGTGTAAGAAAAA+GGG | - | chr4.4:10876416-10876435 | None:intergenic | 30.0% | |
| CTCACCAAATAACTTACTTA+TGG | - | chr4.4:10875575-10875594 | None:intergenic | 30.0% | |
| GTCTATAACATCATAAACTG+AGG | - | chr4.4:10876889-10876908 | None:intergenic | 30.0% | |
| GTTTATGCATGTAATCTGTT+AGG | + | chr4.4:10876458-10876477 | MS.gene28059:intron | 30.0% | |
| TAAGTGTAAGAAAAAGGGAA+AGG | - | chr4.4:10876411-10876430 | None:intergenic | 30.0% | |
| TAGAAGTTCTCAAAAACAAG+TGG | + | chr4.4:10875489-10875508 | MS.gene28059:CDS | 30.0% | |
| TGAGAAGAATGGAAAAATGT+GGG | + | chr4.4:10874953-10874972 | MS.gene28059:CDS | 30.0% | |
| TTATGATGTTATAGACGACA+GGG | + | chr4.4:10876893-10876912 | MS.gene28059:CDS | 30.0% | |
| TTATGCATGTAATCTGTTAG+GGG | + | chr4.4:10876460-10876479 | MS.gene28059:intron | 30.0% | |
| TTCAAATAAGTCAGCCTATA+TGG | + | chr4.4:10874744-10874763 | MS.gene28059:intron | 30.0% | |
| TTCAAATCAACACTAAAGCA+GGG | - | chr4.4:10874850-10874869 | None:intergenic | 30.0% | |
| TTGAGAAGAATGGAAAAATG+TGG | + | chr4.4:10874952-10874971 | MS.gene28059:CDS | 30.0% | |
| TTTATGATGTTATAGACGAC+AGG | + | chr4.4:10876892-10876911 | MS.gene28059:CDS | 30.0% | |
| TTTCAAATCAACACTAAAGC+AGG | - | chr4.4:10874851-10874870 | None:intergenic | 30.0% | |
| ! | AATTTTCATAAGCTATTCCG+AGG | + | chr4.4:10874621-10874640 | MS.gene28059:intron | 30.0% |
| ! | AGAGGCATAAATATGATAGA+GGG | - | chr4.4:10874208-10874227 | None:intergenic | 30.0% |
| ! | ATGTTGTTTATTGTGTTGTG+TGG | + | chr4.4:10875886-10875905 | MS.gene28059:intron | 30.0% |
| ! | CAAGAAATTGATAAGCGTTT+TGG | + | chr4.4:10876203-10876222 | MS.gene28059:intron | 30.0% |
| ! | CTGTTAGGAATTTAAGGTAA+TGG | + | chr4.4:10876072-10876091 | MS.gene28059:intron | 30.0% |
| ! | TATAGAAAACTATGGCCTTA+AGG | - | chr4.4:10875112-10875131 | None:intergenic | 30.0% |
| ! | TTCTTACACTTAACAGGTTT+TGG | + | chr4.4:10876419-10876438 | MS.gene28059:intron | 30.0% |
| !! | GACATTTAGATTTTAGAAGG+AGG | + | chr4.4:10875071-10875090 | MS.gene28059:intron | 30.0% |
| !! | TGTGAAAATTTTAACATGGC+AGG | + | chr4.4:10875275-10875294 | MS.gene28059:intron | 30.0% |
| !!! | AATGATGCATTTTTTTGGCT+AGG | + | chr4.4:10875234-10875253 | MS.gene28059:intron | 30.0% |
| !!! | GTTAATAAACGGGTCTTTTT+TGG | + | chr4.4:10874497-10874516 | MS.gene28059:intron | 30.0% |
| AAACAGAAACCTTTATGCAC+TGG | + | chr4.4:10875856-10875875 | MS.gene28059:intron | 35.0% | |
| AGAAAAAGGGAAAGGAAACT+TGG | - | chr4.4:10876403-10876422 | None:intergenic | 35.0% | |
| ATTCCTATGAGTCATGTTCT+CGG | - | chr4.4:10875798-10875817 | None:intergenic | 35.0% | |
| CATGAGCTTATAGCTTATAG+TGG | - | chr4.4:10874466-10874485 | None:intergenic | 35.0% | |
| GAAAAGTCTCACAATCCTTA+AGG | + | chr4.4:10875094-10875113 | MS.gene28059:intron | 35.0% | |
| GAAATGTACGAAAAGGTTTC+TGG | + | chr4.4:10875361-10875380 | MS.gene28059:CDS | 35.0% | |
| GCATAAAGGTTTCTGTTTGT+GGG | - | chr4.4:10875854-10875873 | None:intergenic | 35.0% | |
| GCTGATAAACTAACTTAAGG+TGG | + | chr4.4:10874243-10874262 | MS.gene28059:intron | 35.0% | |
| GCTTCAATTTCTTCTCTAGA+AGG | - | chr4.4:10876493-10876512 | None:intergenic | 35.0% | |
| TCAAATCAACACTAAAGCAG+GGG | - | chr4.4:10874849-10874868 | None:intergenic | 35.0% | |
| TCACTAGTAAGTCACCATAT+AGG | - | chr4.4:10874761-10874780 | None:intergenic | 35.0% | |
| TGAACATAGCAAGAAACTGA+AGG | + | chr4.4:10876839-10876858 | MS.gene28059:CDS | 35.0% | |
| TGCATAAAGGTTTCTGTTTG+TGG | - | chr4.4:10875855-10875874 | None:intergenic | 35.0% | |
| TTAACATGGCAGGTATCTTA+TGG | + | chr4.4:10875285-10875304 | MS.gene28059:intron | 35.0% | |
| TTTGACCTGAATTGCGATTT+GGG | - | chr4.4:10874125-10874144 | None:intergenic | 35.0% | |
| ! | CACAAACTGGATTGTGATTT+TGG | + | chr4.4:10876777-10876796 | MS.gene28059:CDS | 35.0% |
| ! | CAGAGGCATAAATATGATAG+AGG | - | chr4.4:10874209-10874228 | None:intergenic | 35.0% |
| ! | CCCTTTTTCTTACACTTAAC+AGG | + | chr4.4:10876413-10876432 | MS.gene28059:intron | 35.0% |
| ! | TTTTGACCTGAATTGCGATT+TGG | - | chr4.4:10874126-10874145 | None:intergenic | 35.0% |
| !!! | AGCTATTTTTCACCAAACAG+AGG | - | chr4.4:10874226-10874245 | None:intergenic | 35.0% |
| AAAGAAAGCTGTGGAAGTTG+TGG | + | chr4.4:10876719-10876738 | MS.gene28059:intron | 40.0% | |
| AAGAATGAGATGTGAACCGA+AGG | - | chr4.4:10874100-10874119 | None:intergenic | 40.0% | |
| AAGTCTCTCGGCTACATAAT+TGG | + | chr4.4:10875433-10875452 | MS.gene28059:CDS | 40.0% | |
| AATACTTAGGGTAAGAAGGG+TGG | + | chr4.4:10876238-10876257 | MS.gene28059:intron | 40.0% | |
| ACTTATGGAAAGCTCGACTT+TGG | - | chr4.4:10875560-10875579 | None:intergenic | 40.0% | |
| AGCAGAAAATTTGGATCACC+TGG | - | chr4.4:10875667-10875686 | None:intergenic | 40.0% | |
| AGCTCTTGAGAAACAATGTG+TGG | + | chr4.4:10876510-10876529 | MS.gene28059:CDS | 40.0% | |
| AGGAAGTTCAACCTTGTCAA+AGG | - | chr4.4:10876587-10876606 | None:intergenic | 40.0% | |
| AGGTTCAGAAAATCTTCTCC+AGG | + | chr4.4:10875646-10875665 | MS.gene28059:CDS | 40.0% | |
| AGTCTCTCGGCTACATAATT+GGG | + | chr4.4:10875434-10875453 | MS.gene28059:CDS | 40.0% | |
| ATACTTAGGGTAAGAAGGGT+GGG | + | chr4.4:10876239-10876258 | MS.gene28059:intron | 40.0% | |
| ATGATAACCTGCGCTACAAA+TGG | + | chr4.4:10876744-10876763 | MS.gene28059:CDS | 40.0% | |
| ATTTCCACTCTGAGCTAAAG+AGG | + | chr4.4:10876639-10876658 | MS.gene28059:intron | 40.0% | |
| CAAAAACAAGTGGCTCTTGA+AGG | + | chr4.4:10875499-10875518 | MS.gene28059:CDS | 40.0% | |
| CAGTTTCTTTCCCTTTGACA+AGG | + | chr4.4:10876573-10876592 | MS.gene28059:intron | 40.0% | |
| CTCTTGAGAAACAATGTGTG+GGG | + | chr4.4:10876512-10876531 | MS.gene28059:CDS | 40.0% | |
| GACAAGCACAGCAGAAAATT+TGG | - | chr4.4:10875676-10875695 | None:intergenic | 40.0% | |
| GAGTTGAGGACAAATTTGCA+TGG | - | chr4.4:10876381-10876400 | None:intergenic | 40.0% | |
| GCAGAGGTTATTGAGAAGAA+TGG | + | chr4.4:10874942-10874961 | MS.gene28059:CDS | 40.0% | |
| GCTCTTGAGAAACAATGTGT+GGG | + | chr4.4:10876511-10876530 | MS.gene28059:CDS | 40.0% | |
| GCTTATTTCCATACACACCT+CGG | - | chr4.4:10874641-10874660 | None:intergenic | 40.0% | |
| GGAAAAATGTGGGTATCTAC+TGG | + | chr4.4:10874963-10874982 | MS.gene28059:CDS | 40.0% | |
| GGAAGTTCAACCTTGTCAAA+GGG | - | chr4.4:10876586-10876605 | None:intergenic | 40.0% | |
| TACGTAGTTGTGAGATGGTT+CGG | - | chr4.4:10874710-10874729 | None:intergenic | 40.0% | |
| TAGCAAGAAACTGAAGGCAA+TGG | + | chr4.4:10876845-10876864 | MS.gene28059:CDS | 40.0% | |
| TCTACTGGAATAGTTCGTAG+TGG | + | chr4.4:10874978-10874997 | MS.gene28059:CDS | 40.0% | |
| TGATAACCTGCGCTACAAAT+GGG | + | chr4.4:10876745-10876764 | MS.gene28059:CDS | 40.0% | |
| TTCAATCGAGGAGACATTGT+AGG | + | chr4.4:10875013-10875032 | MS.gene28059:intron | 40.0% | |
| TTTCCACTCTGAGCTAAAGA+GGG | + | chr4.4:10876640-10876659 | MS.gene28059:intron | 40.0% | |
| ! | AGAAACCTTTATGCACTGGT+AGG | + | chr4.4:10875860-10875879 | MS.gene28059:intron | 40.0% |
| ! | ATTTTCTGCTGTGCTTGTCT+AGG | + | chr4.4:10875677-10875696 | MS.gene28059:CDS | 40.0% |
| ! | GAAACCTTTATGCACTGGTA+GGG | + | chr4.4:10875861-10875880 | MS.gene28059:intron | 40.0% |
| ! | GATTTTCTGAACCTACTGTC+TGG | - | chr4.4:10875640-10875659 | None:intergenic | 40.0% |
| !! | AATTTGCAGCTGTGTCGTTT+GGG | + | chr4.4:10875980-10875999 | MS.gene28059:intron | 40.0% |
| AAGCTATTCCGAGGTGTGTA+TGG | + | chr4.4:10874630-10874649 | MS.gene28059:intron | 45.0% | |
| ACAACATCACAATCACCTGC+AGG | - | chr4.4:10876819-10876838 | None:intergenic | 45.0% | |
| ACGTAGTTGTGAGATGGTTC+GGG | - | chr4.4:10874709-10874728 | None:intergenic | 45.0% | |
| ACGTCAAATCCAAAGCCAGA+TGG | + | chr4.4:10874901-10874920 | MS.gene28059:CDS | 45.0% | |
| AGCCAGATGGAATGAAGAGA+CGG | + | chr4.4:10874914-10874933 | MS.gene28059:CDS | 45.0% | |
| ATGGAATGAAGAGACGGGAA+TGG | + | chr4.4:10874920-10874939 | MS.gene28059:CDS | 45.0% | |
| ATGTCCCTACCAGTGCATAA+AGG | - | chr4.4:10875868-10875887 | None:intergenic | 45.0% | |
| CAAAGTGATCACAAACCTGC+AGG | + | chr4.4:10876801-10876820 | MS.gene28059:CDS | 45.0% | |
| CAACCGAGAACATGACTCAT+AGG | + | chr4.4:10875792-10875811 | MS.gene28059:intron | 45.0% | |
| CTTTGCCCAAATCGCAATTC+AGG | + | chr4.4:10874117-10874136 | MS.gene28059:CDS | 45.0% | |
| GGAAAGGAAACTTGGAGTTG+AGG | - | chr4.4:10876395-10876414 | None:intergenic | 45.0% | |
| GGATGTTTATGTCGCTACCT+GGG | + | chr4.4:10875907-10875926 | MS.gene28059:intron | 45.0% | |
| GGCAGGTATCTTATGGAACT+AGG | + | chr4.4:10875292-10875311 | MS.gene28059:intron | 45.0% | |
| TACTTAGGGTAAGAAGGGTG+GGG | + | chr4.4:10876240-10876259 | MS.gene28059:intron | 45.0% | |
| TGACGTACGTAGTTGTGAGA+TGG | - | chr4.4:10874715-10874734 | None:intergenic | 45.0% | |
| TGGATGTTTATGTCGCTACC+TGG | + | chr4.4:10875906-10875925 | MS.gene28059:intron | 45.0% | |
| TTATGTAGCCGAGAGACTTG+AGG | - | chr4.4:10875432-10875451 | None:intergenic | 45.0% | |
| TTCGCTGTCTACGAGATGTA+AGG | - | chr4.4:10875320-10875339 | None:intergenic | 45.0% | |
| ! | AGATGGTTCGGGAGAGTTTA+TGG | - | chr4.4:10874698-10874717 | None:intergenic | 45.0% |
| ! | CTCTTCATTCCATCTGGCTT+TGG | - | chr4.4:10874913-10874932 | None:intergenic | 45.0% |
| ! | GAATTTGCAGCTGTGTCGTT+TGG | + | chr4.4:10875979-10875998 | MS.gene28059:intron | 45.0% |
| ! | TTTCCCTCTTTAGCTCAGAG+TGG | - | chr4.4:10876646-10876665 | None:intergenic | 45.0% |
| !! | TGTACGAAAAGGTTTCTGGC+AGG | + | chr4.4:10875365-10875384 | MS.gene28059:CDS | 45.0% |
| AAAGTCTGCCTGGTCACAGA+AGG | + | chr4.4:10876544-10876563 | MS.gene28059:CDS | 50.0% | |
| AACACTAAAGCAGGGGAAGC+AGG | - | chr4.4:10874842-10874861 | None:intergenic | 50.0% | |
| ACACTAAAGCAGGGGAAGCA+GGG | - | chr4.4:10874841-10874860 | None:intergenic | 50.0% | |
| ATGTTGTTGGGAGCTGTTCG+AGG | + | chr4.4:10875396-10875415 | MS.gene28059:CDS | 50.0% | |
| CAGGAAGACCGGATGTTGTT+GGG | + | chr4.4:10875384-10875403 | MS.gene28059:CDS | 50.0% | |
| CTCTCGGCTACATAATTGGG+CGG | + | chr4.4:10875437-10875456 | MS.gene28059:CDS | 50.0% | |
| GAACAGCTCCCAACAACATC+CGG | - | chr4.4:10875395-10875414 | None:intergenic | 50.0% | |
| GAGTGCAGGAATGTAAGTCG+TGG | - | chr4.4:10875830-10875849 | None:intergenic | 50.0% | |
| GATTCCGTTGAAAGTCTGCC+TGG | + | chr4.4:10876534-10876553 | MS.gene28059:CDS | 50.0% | |
| GCCAGATGGAATGAAGAGAC+GGG | + | chr4.4:10874915-10874934 | MS.gene28059:CDS | 50.0% | |
| GGTTGCAACTTGCAAGGTGT+AGG | + | chr4.4:10875941-10875960 | MS.gene28059:intron | 50.0% | |
| GTGACCAGGCAGACTTTCAA+CGG | - | chr4.4:10876541-10876560 | None:intergenic | 50.0% | |
| GTGACGAAGAAGACGACCTT+CGG | + | chr4.4:10874081-10874100 | MS.gene28059:CDS | 50.0% | |
| GTTTATGTCGCTACCTGGGT+GGG | + | chr4.4:10875911-10875930 | MS.gene28059:intron | 50.0% | |
| TACAGGCACCTCAAGTCTCT+CGG | + | chr4.4:10875421-10875440 | MS.gene28059:CDS | 50.0% | |
| TCAACTGTTCAGGGTAGAGC+AGG | - | chr4.4:10876607-10876626 | None:intergenic | 50.0% | |
| TCCCGTCTCTTCATTCCATC+TGG | - | chr4.4:10874919-10874938 | None:intergenic | 50.0% | |
| TGCAACTTGCAAGGTGTAGG+CGG | + | chr4.4:10875944-10875963 | MS.gene28059:intron | 50.0% | |
| TGGGCTCAGTGATCACAAAC+TGG | + | chr4.4:10876764-10876783 | MS.gene28059:CDS | 50.0% | |
| TGTTTATGTCGCTACCTGGG+TGG | + | chr4.4:10875910-10875929 | MS.gene28059:intron | 50.0% | |
| TTCTGTTTGTGGGTGAGTGC+AGG | - | chr4.4:10875844-10875863 | None:intergenic | 50.0% | |
| TTGGGCGGCATAATGTTGCT+TGG | + | chr4.4:10875452-10875471 | MS.gene28059:CDS | 50.0% | |
| TTTATGTCGCTACCTGGGTG+GGG | + | chr4.4:10875912-10875931 | MS.gene28059:intron | 50.0% | |
| !! | AAGGTTTCTGGCAGGAAGAC+CGG | + | chr4.4:10875373-10875392 | MS.gene28059:CDS | 50.0% |
| !! | GGCTTTGGATTTGACGTTCC+TGG | - | chr4.4:10874898-10874917 | None:intergenic | 50.0% |
| ACTGAGCCCATTTGTAGCGC+AGG | - | chr4.4:10876754-10876773 | None:intergenic | 55.0% | |
| CTGCCTGGTCACAGAAGGAA+GGG | + | chr4.4:10876549-10876568 | MS.gene28059:CDS | 55.0% | |
| GCAACTTGCAAGGTGTAGGC+GGG | + | chr4.4:10875945-10875964 | MS.gene28059:intron | 55.0% | |
| GCAGGAAGACCGGATGTTGT+TGG | + | chr4.4:10875383-10875402 | MS.gene28059:CDS | 55.0% | |
| GGAGGAGGTTGCAACTTGCA+AGG | + | chr4.4:10875935-10875954 | MS.gene28059:intron | 55.0% | |
| TCTGCCTGGTCACAGAAGGA+AGG | + | chr4.4:10876548-10876567 | MS.gene28059:CDS | 55.0% | |
| TGAAGAGACGGGAATGGCAG+AGG | + | chr4.4:10874926-10874945 | MS.gene28059:CDS | 55.0% | |
| TGACCCTTCCTTCTGTGACC+AGG | - | chr4.4:10876555-10876574 | None:intergenic | 55.0% | |
| TTATGTCGCTACCTGGGTGG+GGG | + | chr4.4:10875913-10875932 | MS.gene28059:intron | 55.0% | |
| ! | GAGAGACTTGAGGTGCCTGT+AGG | - | chr4.4:10875422-10875441 | None:intergenic | 55.0% |
| !! | GTGTCGTTTGGGAGGGAATG+CGG | + | chr4.4:10875991-10876010 | MS.gene28059:intron | 55.0% |
| !! | TGCAGCTGTGTCGTTTGGGA+GGG | + | chr4.4:10875984-10876003 | MS.gene28059:intron | 55.0% |
| !! | TTGCAGCTGTGTCGTTTGGG+AGG | + | chr4.4:10875983-10876002 | MS.gene28059:intron | 55.0% |
| TATGTCGCTACCTGGGTGGG+GGG | + | chr4.4:10875914-10875933 | MS.gene28059:intron | 60.0% | |
| GGGAGCTGTTCGAGGCCTAC+AGG | + | chr4.4:10875404-10875423 | MS.gene28059:CDS | 65.0% | |
| GCAACCTCCTCCCCCCACCC+AGG | - | chr4.4:10875927-10875946 | None:intergenic | 75.0% | |
| GCTACCTGGGTGGGGGGAGG+AGG | + | chr4.4:10875920-10875939 | MS.gene28059:intron | 75.0% | |
| GTCGCTACCTGGGTGGGGGG+AGG | + | chr4.4:10875917-10875936 | MS.gene28059:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 10873990 | 10876929 | 10873990 | ID=MS.gene28059 |
| chr4.4 | mRNA | 10873990 | 10876929 | 10873990 | ID=MS.gene28059.t1;Parent=MS.gene28059 |
| chr4.4 | exon | 10873990 | 10874138 | 10873990 | ID=MS.gene28059.t1.exon1;Parent=MS.gene28059.t1 |
| chr4.4 | CDS | 10873990 | 10874138 | 10873990 | ID=cds.MS.gene28059.t1;Parent=MS.gene28059.t1 |
| chr4.4 | exon | 10874899 | 10875030 | 10874899 | ID=MS.gene28059.t1.exon2;Parent=MS.gene28059.t1 |
| chr4.4 | CDS | 10874899 | 10875030 | 10874899 | ID=cds.MS.gene28059.t1;Parent=MS.gene28059.t1 |
| chr4.4 | exon | 10875297 | 10875698 | 10875297 | ID=MS.gene28059.t1.exon3;Parent=MS.gene28059.t1 |
| chr4.4 | CDS | 10875297 | 10875698 | 10875297 | ID=cds.MS.gene28059.t1;Parent=MS.gene28059.t1 |
| chr4.4 | exon | 10876480 | 10876570 | 10876480 | ID=MS.gene28059.t1.exon4;Parent=MS.gene28059.t1 |
| chr4.4 | CDS | 10876480 | 10876570 | 10876480 | ID=cds.MS.gene28059.t1;Parent=MS.gene28059.t1 |
| chr4.4 | exon | 10876723 | 10876929 | 10876723 | ID=MS.gene28059.t1.exon5;Parent=MS.gene28059.t1 |
| chr4.4 | CDS | 10876723 | 10876929 | 10876723 | ID=cds.MS.gene28059.t1;Parent=MS.gene28059.t1 |
| Gene Sequence |
| Protein sequence |
