Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28226.t1 | XP_003598997.1 | 90.9 | 623 | 53 | 1 | 12 | 634 | 2 | 620 | 0.00E+00 | 1101.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28226.t1 | Q9FNR3 | 42.1 | 646 | 354 | 7 | 1 | 633 | 1 | 639 | 5.4e-129 | 463.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28226.t1 | G7IZB2 | 90.9 | 623 | 53 | 1 | 12 | 634 | 2 | 620 | 0.0e+00 | 1101.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28226 | MS.gene44621 | PPI |
| MS.gene28226 | MS.gene91620 | PPI |
| MS.gene28226 | MS.gene021898 | PPI |
| MS.gene069415 | MS.gene28226 | PPI |
| MS.gene28226 | MS.gene069412 | PPI |
| MS.gene28226 | MS.gene021896 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28226.t1 | MTR_3g025900 | 90.851 | 623 | 53 | 1 | 12 | 634 | 2 | 620 | 0.0 | 1133 |
| MS.gene28226.t1 | MTR_7g013770 | 41.888 | 678 | 346 | 8 | 1 | 633 | 3 | 677 | 0.0 | 529 |
| MS.gene28226.t1 | MTR_4g103540 | 39.219 | 538 | 300 | 9 | 117 | 633 | 160 | 691 | 2.06e-117 | 365 |
| MS.gene28226.t1 | MTR_8g021330 | 34.940 | 581 | 331 | 11 | 89 | 633 | 46 | 615 | 7.37e-106 | 333 |
| MS.gene28226.t1 | MTR_5g073450 | 32.308 | 520 | 332 | 9 | 120 | 626 | 125 | 637 | 5.99e-90 | 292 |
| MS.gene28226.t1 | MTR_1g057560 | 31.660 | 518 | 317 | 8 | 119 | 620 | 127 | 623 | 1.62e-85 | 280 |
| MS.gene28226.t1 | MTR_1g090620 | 30.742 | 566 | 342 | 10 | 89 | 626 | 102 | 645 | 1.81e-85 | 281 |
| MS.gene28226.t1 | MTR_7g026630 | 30.672 | 551 | 354 | 8 | 90 | 622 | 110 | 650 | 3.49e-84 | 278 |
| MS.gene28226.t1 | MTR_3g031130 | 29.968 | 634 | 407 | 14 | 14 | 626 | 6 | 623 | 1.20e-83 | 275 |
| MS.gene28226.t1 | MTR_6g033310 | 30.902 | 521 | 330 | 6 | 119 | 623 | 220 | 726 | 9.17e-78 | 262 |
| MS.gene28226.t1 | MTR_2g096230 | 30.275 | 545 | 342 | 11 | 86 | 623 | 69 | 582 | 8.51e-71 | 240 |
| MS.gene28226.t1 | MTR_5g073460 | 31.169 | 462 | 306 | 6 | 175 | 626 | 237 | 696 | 7.23e-70 | 240 |
| MS.gene28226.t1 | MTR_1g117090 | 30.054 | 559 | 333 | 9 | 119 | 627 | 123 | 673 | 4.46e-64 | 224 |
| MS.gene28226.t1 | MTR_4g062330 | 29.746 | 511 | 339 | 8 | 122 | 621 | 102 | 603 | 1.67e-62 | 219 |
| MS.gene28226.t1 | MTR_1g067460 | 27.397 | 511 | 346 | 9 | 123 | 620 | 101 | 599 | 2.64e-60 | 212 |
| MS.gene28226.t1 | MTR_1g067480 | 26.938 | 516 | 349 | 11 | 123 | 624 | 103 | 604 | 7.16e-59 | 208 |
| MS.gene28226.t1 | MTR_5g073620 | 28.538 | 431 | 269 | 8 | 196 | 616 | 288 | 689 | 9.84e-46 | 175 |
| MS.gene28226.t1 | MTR_5g073620 | 25.843 | 267 | 168 | 7 | 368 | 626 | 828 | 1072 | 1.31e-13 | 74.7 |
| MS.gene28226.t1 | MTR_5g074130 | 26.959 | 434 | 289 | 10 | 200 | 620 | 255 | 673 | 8.37e-36 | 144 |
| MS.gene28226.t1 | MTR_5g073480 | 22.460 | 561 | 338 | 11 | 67 | 611 | 141 | 620 | 3.26e-32 | 132 |
| MS.gene28226.t1 | MTR_1g009620 | 26.164 | 451 | 301 | 10 | 201 | 630 | 228 | 667 | 6.31e-32 | 132 |
| MS.gene28226.t1 | MTR_3g464010 | 25.393 | 445 | 287 | 11 | 195 | 620 | 248 | 666 | 3.28e-31 | 129 |
| MS.gene28226.t1 | MTR_4g008260 | 26.362 | 459 | 311 | 10 | 180 | 625 | 200 | 644 | 2.08e-29 | 124 |
| MS.gene28226.t1 | MTR_1g017910 | 26.902 | 368 | 243 | 10 | 249 | 594 | 297 | 660 | 1.13e-26 | 115 |
| MS.gene28226.t1 | MTR_5g073770 | 33.333 | 174 | 114 | 1 | 189 | 360 | 194 | 367 | 9.55e-25 | 107 |
| MS.gene28226.t1 | MTR_5g073920 | 24.091 | 440 | 303 | 11 | 196 | 626 | 246 | 663 | 1.38e-23 | 106 |
| MS.gene28226.t1 | MTR_5g093530 | 26.586 | 331 | 209 | 7 | 267 | 595 | 244 | 542 | 8.69e-23 | 103 |
| MS.gene28226.t1 | MTR_0229s0040 | 33.673 | 196 | 107 | 6 | 454 | 630 | 31 | 222 | 3.92e-19 | 87.4 |
| MS.gene28226.t1 | MTR_5g073900 | 24.745 | 392 | 231 | 12 | 213 | 592 | 1 | 340 | 2.17e-16 | 81.6 |
| MS.gene28226.t1 | MTR_5g073780 | 29.310 | 174 | 116 | 3 | 458 | 625 | 54 | 226 | 1.13e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28226.t1 | AT5G61010 | 42.105 | 646 | 354 | 7 | 1 | 633 | 1 | 639 | 3.04e-166 | 489 |
| MS.gene28226.t1 | AT5G61010 | 42.105 | 646 | 354 | 7 | 1 | 633 | 1 | 639 | 3.04e-166 | 489 |
| MS.gene28226.t1 | AT3G29400 | 37.764 | 662 | 358 | 12 | 14 | 633 | 9 | 658 | 1.10e-136 | 414 |
| MS.gene28226.t1 | AT5G50380 | 38.995 | 577 | 306 | 9 | 86 | 633 | 123 | 682 | 1.25e-131 | 402 |
| MS.gene28226.t1 | AT3G14090 | 35.970 | 531 | 307 | 7 | 122 | 622 | 86 | 613 | 1.36e-106 | 335 |
| MS.gene28226.t1 | AT1G54090 | 32.881 | 590 | 333 | 9 | 89 | 631 | 49 | 622 | 1.42e-96 | 309 |
| MS.gene28226.t1 | AT1G72470 | 32.939 | 592 | 334 | 9 | 89 | 633 | 56 | 631 | 2.50e-96 | 309 |
| MS.gene28226.t1 | AT5G03540 | 32.839 | 539 | 310 | 9 | 107 | 622 | 6 | 515 | 1.23e-90 | 291 |
| MS.gene28226.t1 | AT5G03540 | 32.021 | 559 | 326 | 10 | 89 | 622 | 101 | 630 | 6.29e-90 | 292 |
| MS.gene28226.t1 | AT5G03540 | 31.130 | 575 | 336 | 10 | 89 | 622 | 101 | 656 | 2.03e-87 | 286 |
| MS.gene28226.t1 | AT5G52340 | 31.335 | 517 | 322 | 8 | 119 | 622 | 127 | 623 | 2.79e-82 | 272 |
| MS.gene28226.t1 | AT5G58430 | 28.346 | 635 | 409 | 14 | 14 | 623 | 6 | 619 | 1.03e-81 | 270 |
| MS.gene28226.t1 | AT1G07000 | 28.505 | 649 | 368 | 17 | 14 | 623 | 6 | 597 | 1.75e-75 | 253 |
| MS.gene28226.t1 | AT5G13150 | 30.147 | 544 | 340 | 9 | 106 | 627 | 124 | 649 | 1.17e-72 | 246 |
| MS.gene28226.t1 | AT5G13990 | 33.628 | 452 | 279 | 8 | 196 | 634 | 250 | 693 | 5.80e-72 | 246 |
| MS.gene28226.t1 | AT1G07725 | 29.137 | 556 | 360 | 12 | 89 | 634 | 72 | 603 | 1.99e-70 | 239 |
| MS.gene28226.t1 | AT3G09520 | 28.177 | 543 | 345 | 8 | 103 | 621 | 84 | 605 | 5.40e-70 | 239 |
| MS.gene28226.t1 | AT5G59730 | 30.605 | 562 | 345 | 14 | 86 | 624 | 61 | 600 | 1.61e-68 | 235 |
| MS.gene28226.t1 | AT2G28640 | 29.570 | 558 | 338 | 14 | 84 | 626 | 65 | 582 | 1.97e-68 | 234 |
| MS.gene28226.t1 | AT5G59730 | 30.605 | 562 | 345 | 14 | 86 | 624 | 61 | 600 | 2.54e-68 | 234 |
| MS.gene28226.t1 | AT2G39380 | 28.738 | 515 | 343 | 7 | 123 | 623 | 107 | 611 | 3.83e-68 | 234 |
| MS.gene28226.t1 | AT3G55150 | 28.571 | 518 | 340 | 8 | 123 | 623 | 107 | 611 | 6.51e-63 | 220 |
| MS.gene28226.t1 | AT5G52350 | 28.346 | 508 | 327 | 9 | 140 | 633 | 102 | 586 | 5.08e-61 | 214 |
| MS.gene28226.t1 | AT3G09530 | 26.439 | 556 | 368 | 12 | 86 | 622 | 69 | 602 | 2.23e-54 | 196 |
| MS.gene28226.t1 | AT2G28650 | 27.930 | 512 | 324 | 8 | 110 | 620 | 87 | 554 | 1.96e-52 | 190 |
| MS.gene28226.t1 | AT4G31540 | 24.052 | 686 | 431 | 24 | 15 | 634 | 13 | 674 | 2.31e-33 | 136 |
| MS.gene28226.t1 | AT1G51640 | 24.336 | 452 | 298 | 12 | 203 | 626 | 196 | 631 | 1.40e-22 | 102 |
Find 76 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATTTATTTGGAGATTTC+TGG | 0.101249 | 3.3:-17759223 | MS.gene28226:CDS |
| CATCGAAAATGTGCTTAAAA+TGG | 0.261889 | 3.3:-17759972 | MS.gene28226:CDS |
| ATCAAGGCACTTGTTGAATA+TGG | 0.262018 | 3.3:-17759491 | MS.gene28226:CDS |
| ACTTGACATGTATGAGGTTT+TGG | 0.277794 | 3.3:-17759720 | MS.gene28226:CDS |
| CATTGACAATAAGAAGATTA+AGG | 0.278776 | 3.3:+17759462 | None:intergenic |
| CCAGGAAAAGATTTATTTGA+TGG | 0.281633 | 3.3:+17759554 | None:intergenic |
| TTTGTTGCAAAGTTTGAGTT+AGG | 0.281815 | 3.3:+17760419 | None:intergenic |
| CGGCCTCACCAAAATTTAAA+AGG | 0.284169 | 3.3:+17759783 | None:intergenic |
| TCTTCGCGAAGTTCTTTATC+AGG | 0.287927 | 3.3:+17759008 | None:intergenic |
| ATGAGTTTGGAGACAAATAT+TGG | 0.301189 | 3.3:-17760490 | MS.gene28226:CDS |
| TCTTCACAGGTTGTGATCAT+AGG | 0.324664 | 3.3:+17760697 | None:intergenic |
| CACAAACTTCTAAGAAGCTT+TGG | 0.327792 | 3.3:-17759629 | MS.gene28226:CDS |
| TGAAGATAAGGTAATGAGTT+TGG | 0.328772 | 3.3:-17760503 | MS.gene28226:CDS |
| TTTGATTGATTGAACACAAT+TGG | 0.329865 | 3.3:+17760572 | None:intergenic |
| GTTCAATTGCTTGCAACTTA+AGG | 0.341266 | 3.3:-17759379 | MS.gene28226:CDS |
| CTCGAATCCATTTCTTTATC+CGG | 0.355857 | 3.3:+17759930 | None:intergenic |
| TCGCGAAGATCTACAAATAT+CGG | 0.379075 | 3.3:-17758994 | MS.gene28226:CDS |
| CTCTGAATTATCTCGAGGTT+CGG | 0.392003 | 3.3:-17759813 | MS.gene28226:CDS |
| AGCAAGCAGTACTACAGATT+TGG | 0.397757 | 3.3:-17760143 | MS.gene28226:CDS |
| ATTGTGTATGATGGATCATT+TGG | 0.401464 | 3.3:-17760226 | MS.gene28226:CDS |
| CATTCATTACATGGTTCAAA+AGG | 0.407674 | 3.3:-17759267 | MS.gene28226:CDS |
| CTTGGATTTGTTGCACAAGT+TGG | 0.424158 | 3.3:+17759334 | None:intergenic |
| TGAATCACCGGATAAAGAAA+TGG | 0.440018 | 3.3:-17759937 | MS.gene28226:CDS |
| AAGCAGATTCTCGGAGACTT+TGG | 0.454981 | 3.3:-17759857 | MS.gene28226:CDS |
| AGAGAAACAAAACTGATAAA+CGG | 0.460482 | 3.3:+17759832 | None:intergenic |
| TGACAAGTGGATCAAGTATA+CGG | 0.461951 | 3.3:-17758910 | MS.gene28226:CDS |
| TGCTTCTAGAAGAGAAGCCT+TGG | 0.462015 | 3.3:-17760032 | MS.gene28226:CDS |
| GAATGTAAATTTGAATCATA+AGG | 0.465505 | 3.3:-17760383 | MS.gene28226:CDS |
| ATCTGTAGTACTGCTTGCTT+CGG | 0.467584 | 3.3:+17760147 | None:intergenic |
| AAATTGTGTAAGCAGATTCT+CGG | 0.469474 | 3.3:-17759866 | MS.gene28226:CDS |
| ATTGTTCAGACGTATCTTGT+TGG | 0.471926 | 3.3:-17759896 | MS.gene28226:CDS |
| TTTGGTGAGGCCGTAACAAT+GGG | 0.474376 | 3.3:-17759773 | MS.gene28226:CDS |
| TTGTTTACTTGACATGTATG+AGG | 0.480736 | 3.3:-17759726 | MS.gene28226:CDS |
| GAATTGAAAGACATGTAATC+AGG | 0.483690 | 3.3:+17760262 | None:intergenic |
| CACATGTTGATCTTCTTCAC+AGG | 0.485970 | 3.3:+17760684 | None:intergenic |
| GCTTAAGTGTGTTGAAGATA+AGG | 0.486173 | 3.3:-17760515 | MS.gene28226:CDS |
| GTTTGCTTCAAATTACCATC+AGG | 0.487592 | 3.3:-17760074 | MS.gene28226:CDS |
| CCGGTATAACTTCGGTAAGC+AGG | 0.491544 | 3.3:+17758954 | None:intergenic |
| GTCAAGGCTTGAGGATGAGT+TGG | 0.492679 | 3.3:-17760320 | MS.gene28226:CDS |
| ATACACAATATCAACTCTGT+TGG | 0.496515 | 3.3:+17760240 | None:intergenic |
| GAAGTATACAAAACACAGAC+AGG | 0.498418 | 3.3:-17759041 | MS.gene28226:CDS |
| AGCAACATCAGTGTATAACT+TGG | 0.499600 | 3.3:+17759316 | None:intergenic |
| AGTGGCATTGTTTGAATCAC+CGG | 0.506682 | 3.3:-17759949 | MS.gene28226:CDS |
| CCTGCTTACCGAAGTTATAC+CGG | 0.507813 | 3.3:-17758954 | MS.gene28226:CDS |
| TTGTTGCAAAGTTTGAGTTA+GGG | 0.513478 | 3.3:+17760420 | None:intergenic |
| AGAGTTGATATTGTGTATGA+TGG | 0.520793 | 3.3:-17760235 | MS.gene28226:CDS |
| TTCTGGCTTCGCCGACATGT+TGG | 0.524938 | 3.3:-17759206 | MS.gene28226:CDS |
| GATGAATAACATTCATTACA+TGG | 0.527155 | 3.3:-17759276 | MS.gene28226:CDS |
| TCATGACATATCTTGTAAGA+TGG | 0.530309 | 3.3:+17759519 | None:intergenic |
| TTGAGATCTTCAAGTACAGA+AGG | 0.532317 | 3.3:+17760115 | None:intergenic |
| CGTCTAACATTGATGACAAG+TGG | 0.536876 | 3.3:-17758923 | MS.gene28226:CDS |
| TGGATCATTTGGTTCAATTG+AGG | 0.538106 | 3.3:-17760215 | MS.gene28226:CDS |
| AATCTCCAAATAAATTGCAT+AGG | 0.555389 | 3.3:+17759228 | None:intergenic |
| GTGTTCAATCAATCAAAGAA+AGG | 0.555579 | 3.3:-17760566 | MS.gene28226:CDS |
| TAGTACTGCTTGCTTCGGAT+CGG | 0.558989 | 3.3:+17760152 | None:intergenic |
| GAAGCTATGAGAAGGTGACT+TGG | 0.564885 | 3.3:-17759163 | MS.gene28226:CDS |
| AATGTTAGACGAGTTTCTAC+CGG | 0.566162 | 3.3:+17758935 | None:intergenic |
| TGTGTGTGTTCCCATTGTTA+CGG | 0.578239 | 3.3:+17759763 | None:intergenic |
| AGTACTTTCTGTGTTTAGTG+AGG | 0.587227 | 3.3:-17759135 | MS.gene28226:CDS |
| AGTTGTTATGTCAAGGCTTG+AGG | 0.587807 | 3.3:-17760329 | MS.gene28226:CDS |
| TGAAACTTCGACTGATCTTG+CGG | 0.589132 | 3.3:-17759441 | MS.gene28226:CDS |
| TGTTTCTCTGAATTATCTCG+AGG | 0.589153 | 3.3:-17759818 | MS.gene28226:CDS |
| AGACATGACAAAACTCCTGA+TGG | 0.596832 | 3.3:+17760059 | None:intergenic |
| AATGACAAAGTGCTCATCCA+AGG | 0.601760 | 3.3:+17760015 | None:intergenic |
| AGATGGTGAACACCTCCACC+AGG | 0.608901 | 3.3:+17759536 | None:intergenic |
| AAAATGTGCTTAAAATGGAG+TGG | 0.609715 | 3.3:-17759967 | MS.gene28226:CDS |
| AGTTTCTACCGGTATAACTT+CGG | 0.613307 | 3.3:+17758946 | None:intergenic |
| GCACAAGTTGGATTCTAGAG+TGG | 0.627118 | 3.3:+17759346 | None:intergenic |
| TTATGCTAGAAGCTATGAGA+AGG | 0.634466 | 3.3:-17759171 | MS.gene28226:CDS |
| ATATGTCATGAATTACATCA+AGG | 0.636314 | 3.3:-17759507 | MS.gene28226:CDS |
| GCTGAAACATGCCAACATGT+CGG | 0.661748 | 3.3:+17759195 | None:intergenic |
| ATGGTAATTTGAAGCAAACA+TGG | 0.661847 | 3.3:+17760078 | None:intergenic |
| TATACAAAACACAGACAGGG+TGG | 0.686135 | 3.3:-17759037 | MS.gene28226:CDS |
| CAAGTGGATCAAGTATACGG+TGG | 0.709540 | 3.3:-17758907 | MS.gene28226:CDS |
| AAGTATACAAAACACAGACA+GGG | 0.732452 | 3.3:-17759040 | MS.gene28226:CDS |
| CTGTGAAGAAGATCAACATG+TGG | 0.761131 | 3.3:-17760683 | MS.gene28226:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTAGATCTTTTTCA+TGG | - | chr3.3:17760672-17760691 | MS.gene28226:CDS | 15.0% |
| !! | AAAAACCTATGCAATTTATT+TGG | - | chr3.3:17760309-17760328 | MS.gene28226:CDS | 20.0% |
| !! | GAATGTAAATTTGAATCATA+AGG | - | chr3.3:17759159-17759178 | MS.gene28226:CDS | 20.0% |
| !! | TCTGAGTATTTAAAAATTGT+TGG | - | chr3.3:17759088-17759107 | MS.gene28226:CDS | 20.0% |
| !!! | AAGTAAACAAAACAGTTTTT+CGG | + | chr3.3:17759806-17759825 | None:intergenic | 20.0% |
| ! | AATCTCCAAATAAATTGCAT+AGG | + | chr3.3:17760317-17760336 | None:intergenic | 25.0% |
| ! | AGAGAAACAAAACTGATAAA+CGG | + | chr3.3:17759713-17759732 | None:intergenic | 25.0% |
| ! | ATATGTCATGAATTACATCA+AGG | - | chr3.3:17760035-17760054 | MS.gene28226:CDS | 25.0% |
| ! | CATTGACAATAAGAAGATTA+AGG | + | chr3.3:17760083-17760102 | None:intergenic | 25.0% |
| ! | GATGAATAACATTCATTACA+TGG | - | chr3.3:17760266-17760285 | MS.gene28226:CDS | 25.0% |
| ! | TTTGATTGATTGAACACAAT+TGG | + | chr3.3:17758973-17758992 | None:intergenic | 25.0% |
| !! | AGTAAACAAAACAGTTTTTC+GGG | + | chr3.3:17759805-17759824 | None:intergenic | 25.0% |
| !!! | AAAGATTTTAGTACTGCTTT+TGG | - | chr3.3:17760477-17760496 | MS.gene28226:CDS | 25.0% |
| AAAATGTGCTTAAAATGGAG+TGG | - | chr3.3:17759575-17759594 | MS.gene28226:CDS | 30.0% | |
| AAATTGTGTAAGCAGATTCT+CGG | - | chr3.3:17759676-17759695 | MS.gene28226:CDS | 30.0% | |
| AAGTATACAAAACACAGACA+GGG | - | chr3.3:17760502-17760521 | MS.gene28226:CDS | 30.0% | |
| ATACACAATATCAACTCTGT+TGG | + | chr3.3:17759305-17759324 | None:intergenic | 30.0% | |
| ATGAGTTTGGAGACAAATAT+TGG | - | chr3.3:17759052-17759071 | MS.gene28226:CDS | 30.0% | |
| CATCGAAAATGTGCTTAAAA+TGG | - | chr3.3:17759570-17759589 | MS.gene28226:CDS | 30.0% | |
| CATTCATTACATGGTTCAAA+AGG | - | chr3.3:17760275-17760294 | MS.gene28226:CDS | 30.0% | |
| CCAGGAAAAGATTTATTTGA+TGG | + | chr3.3:17759991-17760010 | None:intergenic | 30.0% | |
| GAATTGAAAGACATGTAATC+AGG | + | chr3.3:17759283-17759302 | None:intergenic | 30.0% | |
| GCAATTTATTTGGAGATTTC+TGG | - | chr3.3:17760319-17760338 | MS.gene28226:CDS | 30.0% | |
| GTGTTCAATCAATCAAAGAA+AGG | - | chr3.3:17758976-17758995 | MS.gene28226:CDS | 30.0% | |
| TCATGACATATCTTGTAAGA+TGG | + | chr3.3:17760026-17760045 | None:intergenic | 30.0% | |
| TGAAGATAAGGTAATGAGTT+TGG | - | chr3.3:17759039-17759058 | MS.gene28226:CDS | 30.0% | |
| TGAGGATGAAAAAATCAATG+AGG | - | chr3.3:17759345-17759364 | MS.gene28226:CDS | 30.0% | |
| TTGTTTACTTGACATGTATG+AGG | - | chr3.3:17759816-17759835 | MS.gene28226:CDS | 30.0% | |
| ! | ATGGTAATTTGAAGCAAACA+TGG | + | chr3.3:17759467-17759486 | None:intergenic | 30.0% |
| ! | CCATCAAATAAATCTTTTCC+TGG | - | chr3.3:17759988-17760007 | MS.gene28226:CDS | 30.0% |
| ! | GTTTTGCGCCTTTTAAATTT+TGG | - | chr3.3:17759751-17759770 | MS.gene28226:CDS | 30.0% |
| ! | TCAAATAAATCTTTTCCTGG+TGG | - | chr3.3:17759991-17760010 | MS.gene28226:CDS | 30.0% |
| ! | TTGTTGCAAAGTTTGAGTTA+GGG | + | chr3.3:17759125-17759144 | None:intergenic | 30.0% |
| ! | TTTGTTGCAAAGTTTGAGTT+AGG | + | chr3.3:17759126-17759145 | None:intergenic | 30.0% |
| ! | TTTTGCAAGTTGTTATGTCA+AGG | - | chr3.3:17759206-17759225 | MS.gene28226:CDS | 30.0% |
| !! | AGAGTTGATATTGTGTATGA+TGG | - | chr3.3:17759307-17759326 | MS.gene28226:CDS | 30.0% |
| !! | ATTGTGTATGATGGATCATT+TGG | - | chr3.3:17759316-17759335 | MS.gene28226:CDS | 30.0% |
| !! | GAAGTTGATTCTTTTGTTAG+AGG | - | chr3.3:17759883-17759902 | MS.gene28226:CDS | 30.0% |
| AATGTTAGACGAGTTTCTAC+CGG | + | chr3.3:17760610-17760629 | None:intergenic | 35.0% | |
| AGCAACATCAGTGTATAACT+TGG | + | chr3.3:17760229-17760248 | None:intergenic | 35.0% | |
| AGTACTTTCTGTGTTTAGTG+AGG | - | chr3.3:17760407-17760426 | MS.gene28226:CDS | 35.0% | |
| AGTTTCTACCGGTATAACTT+CGG | + | chr3.3:17760599-17760618 | None:intergenic | 35.0% | |
| ATTGTTCAGACGTATCTTGT+TGG | - | chr3.3:17759646-17759665 | MS.gene28226:CDS | 35.0% | |
| CTCGAATCCATTTCTTTATC+CGG | + | chr3.3:17759615-17759634 | None:intergenic | 35.0% | |
| GAAGTATACAAAACACAGAC+AGG | - | chr3.3:17760501-17760520 | MS.gene28226:CDS | 35.0% | |
| GCTTAAGTGTGTTGAAGATA+AGG | - | chr3.3:17759027-17759046 | MS.gene28226:CDS | 35.0% | |
| GTTCAATTGCTTGCAACTTA+AGG | - | chr3.3:17760163-17760182 | MS.gene28226:CDS | 35.0% | |
| GTTTGCTTCAAATTACCATC+AGG | - | chr3.3:17759468-17759487 | MS.gene28226:CDS | 35.0% | |
| TCGCGAAGATCTACAAATAT+CGG | - | chr3.3:17760548-17760567 | MS.gene28226:CDS | 35.0% | |
| TGAATCACCGGATAAAGAAA+TGG | - | chr3.3:17759605-17759624 | MS.gene28226:CDS | 35.0% | |
| TGACAAGTGGATCAAGTATA+CGG | - | chr3.3:17760632-17760651 | MS.gene28226:CDS | 35.0% | |
| TGTTTCTCTGAATTATCTCG+AGG | - | chr3.3:17759724-17759743 | MS.gene28226:CDS | 35.0% | |
| TTATGCTAGAAGCTATGAGA+AGG | - | chr3.3:17760371-17760390 | MS.gene28226:CDS | 35.0% | |
| TTGAGATCTTCAAGTACAGA+AGG | + | chr3.3:17759430-17759449 | None:intergenic | 35.0% | |
| ! | AATAAATCTTTTCCTGGTGG+AGG | - | chr3.3:17759994-17760013 | MS.gene28226:CDS | 35.0% |
| ! | ACTTGACATGTATGAGGTTT+TGG | - | chr3.3:17759822-17759841 | MS.gene28226:CDS | 35.0% |
| ! | ATCAAGGCACTTGTTGAATA+TGG | - | chr3.3:17760051-17760070 | MS.gene28226:CDS | 35.0% |
| ! | CACAAACTTCTAAGAAGCTT+TGG | - | chr3.3:17759913-17759932 | MS.gene28226:CDS | 35.0% |
| ! | TGAGTTGAGAAAAACTCTCT+TGG | - | chr3.3:17758937-17758956 | MS.gene28226:CDS | 35.0% |
| ! | TGGATCATTTGGTTCAATTG+AGG | - | chr3.3:17759327-17759346 | MS.gene28226:CDS | 35.0% |
| !! | AAAAAATCAATGAGGCATCG+CGG | - | chr3.3:17759353-17759372 | MS.gene28226:CDS | 35.0% |
| AGACATGACAAAACTCCTGA+TGG | + | chr3.3:17759486-17759505 | None:intergenic | 40.0% | |
| AGCAAGCAGTACTACAGATT+TGG | - | chr3.3:17759399-17759418 | MS.gene28226:CDS | 40.0% | |
| AGTGGCATTGTTTGAATCAC+CGG | - | chr3.3:17759593-17759612 | MS.gene28226:CDS | 40.0% | |
| AGTTGTTATGTCAAGGCTTG+AGG | - | chr3.3:17759213-17759232 | MS.gene28226:CDS | 40.0% | |
| ATCTGTAGTACTGCTTGCTT+CGG | + | chr3.3:17759398-17759417 | None:intergenic | 40.0% | |
| CACATGTTGATCTTCTTCAC+AGG | + | chr3.3:17758861-17758880 | None:intergenic | 40.0% | |
| CGGCCTCACCAAAATTTAAA+AGG | + | chr3.3:17759762-17759781 | None:intergenic | 40.0% | |
| CTCTGAATTATCTCGAGGTT+CGG | - | chr3.3:17759729-17759748 | MS.gene28226:CDS | 40.0% | |
| CTGTGAAGAAGATCAACATG+TGG | - | chr3.3:17758859-17758878 | MS.gene28226:CDS | 40.0% | |
| TATACAAAACACAGACAGGG+TGG | - | chr3.3:17760505-17760524 | MS.gene28226:CDS | 40.0% | |
| TCTTCACAGGTTGTGATCAT+AGG | + | chr3.3:17758848-17758867 | None:intergenic | 40.0% | |
| TCTTCGCGAAGTTCTTTATC+AGG | + | chr3.3:17760537-17760556 | None:intergenic | 40.0% | |
| TGAAACTTCGACTGATCTTG+CGG | - | chr3.3:17760101-17760120 | MS.gene28226:CDS | 40.0% | |
| TGTGTGTGTTCCCATTGTTA+CGG | + | chr3.3:17759782-17759801 | None:intergenic | 40.0% | |
| ! | AATGACAAAGTGCTCATCCA+AGG | + | chr3.3:17759530-17759549 | None:intergenic | 40.0% |
| ! | CGTCTAACATTGATGACAAG+TGG | - | chr3.3:17760619-17760638 | MS.gene28226:CDS | 40.0% |
| !! | CTTGGATTTGTTGCACAAGT+TGG | + | chr3.3:17760211-17760230 | None:intergenic | 40.0% |
| !! | GCGCCTTTTAAATTTTGGTG+AGG | - | chr3.3:17759756-17759775 | MS.gene28226:CDS | 40.0% |
| AAGCAGATTCTCGGAGACTT+TGG | - | chr3.3:17759685-17759704 | MS.gene28226:CDS | 45.0% | |
| CAAGTGGATCAAGTATACGG+TGG | - | chr3.3:17760635-17760654 | MS.gene28226:CDS | 45.0% | |
| CCTGCTTACCGAAGTTATAC+CGG | - | chr3.3:17760588-17760607 | MS.gene28226:CDS | 45.0% | |
| GAAGCTATGAGAAGGTGACT+TGG | - | chr3.3:17760379-17760398 | MS.gene28226:CDS | 45.0% | |
| GCTGAAACATGCCAACATGT+CGG | + | chr3.3:17760350-17760369 | None:intergenic | 45.0% | |
| TAGTACTGCTTGCTTCGGAT+CGG | + | chr3.3:17759393-17759412 | None:intergenic | 45.0% | |
| TTTGGTGAGGCCGTAACAAT+GGG | - | chr3.3:17759769-17759788 | MS.gene28226:CDS | 45.0% | |
| ! | GCACAAGTTGGATTCTAGAG+TGG | + | chr3.3:17760199-17760218 | None:intergenic | 45.0% |
| ! | TGCTTCTAGAAGAGAAGCCT+TGG | - | chr3.3:17759510-17759529 | MS.gene28226:CDS | 45.0% |
| ! | TTTTGGTGAGGCCGTAACAA+TGG | - | chr3.3:17759768-17759787 | MS.gene28226:CDS | 45.0% |
| !!! | GGTTTTGGAACTTCTAGCAG+TGG | - | chr3.3:17759837-17759856 | MS.gene28226:CDS | 45.0% |
| CCGGTATAACTTCGGTAAGC+AGG | + | chr3.3:17760591-17760610 | None:intergenic | 50.0% | |
| GTCAAGGCTTGAGGATGAGT+TGG | - | chr3.3:17759222-17759241 | MS.gene28226:CDS | 50.0% | |
| AGATGGTGAACACCTCCACC+AGG | + | chr3.3:17760009-17760028 | None:intergenic | 55.0% | |
| !! | TTCTGGCTTCGCCGACATGT+TGG | - | chr3.3:17760336-17760355 | MS.gene28226:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 17758830 | 17760734 | 17758830 | ID=MS.gene28226 |
| chr3.3 | mRNA | 17758830 | 17760734 | 17758830 | ID=MS.gene28226.t1;Parent=MS.gene28226 |
| chr3.3 | exon | 17758830 | 17760734 | 17758830 | ID=MS.gene28226.t1.exon1;Parent=MS.gene28226.t1 |
| chr3.3 | CDS | 17758830 | 17760734 | 17758830 | ID=cds.MS.gene28226.t1;Parent=MS.gene28226.t1 |
| Gene Sequence |
| Protein sequence |
