Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28326.t1 | XP_003606819.1 | 98.3 | 362 | 6 | 0 | 4 | 365 | 3 | 364 | 2.40E-177 | 631.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28326.t1 | O04153 | 80.3 | 361 | 67 | 1 | 9 | 365 | 8 | 368 | 3.0e-144 | 513.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28326.t1 | G7JEV8 | 98.3 | 362 | 6 | 0 | 4 | 365 | 3 | 364 | 1.7e-177 | 631.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050630 | MS.gene28326 | 0.821666 | 3.58E-53 | -1.69E-46 |
| MS.gene053144 | MS.gene28326 | 0.801531 | 8.62E-49 | -1.69E-46 |
| MS.gene056396 | MS.gene28326 | 0.941731 | 2.49E-101 | -1.69E-46 |
| MS.gene056598 | MS.gene28326 | 0.874518 | 6.35E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005307 | MS.gene28326 | PPI |
| MS.gene44181 | MS.gene28326 | PPI |
| MS.gene40797 | MS.gene28326 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28326.t1 | MTR_4g068080 | 98.263 | 403 | 7 | 0 | 4 | 406 | 3 | 405 | 0.0 | 812 |
| MS.gene28326.t1 | MTR_7g080370 | 81.912 | 387 | 69 | 1 | 9 | 395 | 9 | 394 | 0.0 | 627 |
| MS.gene28326.t1 | MTR_7g080370 | 81.912 | 387 | 69 | 1 | 9 | 395 | 9 | 394 | 0.0 | 627 |
| MS.gene28326.t1 | MTR_1g083960 | 64.634 | 328 | 116 | 0 | 25 | 352 | 24 | 351 | 2.08e-155 | 446 |
| MS.gene28326.t1 | MTR_3g098430 | 33.827 | 405 | 204 | 14 | 3 | 351 | 6 | 402 | 1.30e-51 | 181 |
| MS.gene28326.t1 | MTR_3g098430 | 33.827 | 405 | 204 | 14 | 3 | 351 | 6 | 402 | 1.72e-51 | 181 |
| MS.gene28326.t1 | MTR_8g095680 | 33.170 | 407 | 188 | 14 | 9 | 346 | 9 | 400 | 8.24e-51 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28326.t1 | AT1G08450 | 78.000 | 400 | 84 | 1 | 9 | 404 | 8 | 407 | 0.0 | 638 |
| MS.gene28326.t1 | AT1G08450 | 72.500 | 400 | 81 | 2 | 9 | 404 | 8 | 382 | 0.0 | 576 |
| MS.gene28326.t1 | AT1G56340 | 60.109 | 366 | 143 | 1 | 1 | 366 | 1 | 363 | 4.48e-160 | 457 |
| MS.gene28326.t1 | AT1G56340 | 60.109 | 366 | 143 | 1 | 1 | 366 | 1 | 363 | 1.17e-159 | 456 |
| MS.gene28326.t1 | AT1G09210 | 59.780 | 363 | 146 | 0 | 4 | 366 | 1 | 363 | 9.31e-158 | 451 |
| MS.gene28326.t1 | AT1G08450 | 60.099 | 406 | 102 | 4 | 4 | 404 | 3 | 353 | 1.08e-155 | 444 |
| MS.gene28326.t1 | AT5G61790 | 33.668 | 398 | 199 | 13 | 7 | 347 | 5 | 394 | 4.28e-62 | 209 |
| MS.gene28326.t1 | AT5G07340 | 34.524 | 420 | 204 | 16 | 19 | 383 | 29 | 432 | 4.48e-50 | 177 |
| MS.gene28326.t1 | AT5G07340 | 34.383 | 413 | 200 | 16 | 26 | 383 | 28 | 424 | 4.21e-49 | 174 |
Find 113 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGCCAACATACTTTAT+TGG | 0.145055 | 4.4:-39095611 | None:intergenic |
| GTATGCTGGATTAGGAATTT+TGG | 0.215109 | 4.4:-39095101 | None:intergenic |
| CACCAGGGTTCTGTTCTTAT+TGG | 0.259124 | 4.4:-39092821 | None:intergenic |
| GGTTACATCAAACTTCTTTC+CGG | 0.268805 | 4.4:+39092889 | MS.gene28326:CDS |
| CTCTGGTATCTTTGCAGATA+TGG | 0.277207 | 4.4:-39092794 | None:intergenic |
| AAGAATATATGGTTAATAAT+AGG | 0.283521 | 4.4:+39095851 | MS.gene28326:CDS |
| AGAGAGAGGGGCAGTAGATA+TGG | 0.294547 | 4.4:+39096164 | MS.gene28326:CDS |
| TTCCACTTTCCCTTGTAGTT+GGG | 0.297629 | 4.4:-39095239 | None:intergenic |
| TTGGCGGTGATACTCCTTAT+AGG | 0.301600 | 4.4:+39092932 | MS.gene28326:CDS |
| CTTCCACTTTCCCTTGTAGT+TGG | 0.304273 | 4.4:-39095240 | None:intergenic |
| TCCTGATCCGAAAGCCAAAA+AGG | 0.307351 | 4.4:+39094911 | MS.gene28326:CDS |
| CACTCCAGATCCTTTCTAAT+AGG | 0.315359 | 4.4:-39094011 | None:intergenic |
| GCAAGTTGTGGAAGAATATA+TGG | 0.315690 | 4.4:+39095840 | MS.gene28326:CDS |
| CAAGGATGTCAAAGCGAAAA+AGG | 0.316348 | 4.4:+39094169 | MS.gene28326:CDS |
| TTAAGTATACTGCTGGAAAA+TGG | 0.316759 | 4.4:+39092259 | MS.gene28326:CDS |
| GCTTAATGCAGTTTGATGTT+TGG | 0.329009 | 4.4:+39093921 | MS.gene28326:intron |
| ACCTCTGGTTTGACATCATC+AGG | 0.330343 | 4.4:-39094462 | None:intergenic |
| AAGAAATCAACGAACCTATA+AGG | 0.347952 | 4.4:-39092946 | None:intergenic |
| GATAATCGAGAAAGAGATTC+TGG | 0.369820 | 4.4:+39094104 | MS.gene28326:CDS |
| AGAATATATGGTTAATAATA+GGG | 0.377299 | 4.4:+39095852 | MS.gene28326:CDS |
| TATGTCAATCAGAAGAAGTT+TGG | 0.379337 | 4.4:+39092913 | MS.gene28326:CDS |
| TTTGTTTCCTGCAGAATTTG+AGG | 0.400410 | 4.4:+39095562 | MS.gene28326:intron |
| GGTCCTCTGTATGCTGGATT+AGG | 0.400688 | 4.4:-39095109 | None:intergenic |
| TTCCATGGTCCTCTGTATGC+TGG | 0.401308 | 4.4:-39095115 | None:intergenic |
| TCTATTGCAGCCAGCAGATT+GGG | 0.403441 | 4.4:+39094416 | MS.gene28326:intron |
| GCGAAAAGAGGAGGAGAGAG+AGG | 0.405303 | 4.4:+39096150 | MS.gene28326:CDS |
| AATGAAAAGTGATTATTAGA+AGG | 0.405531 | 4.4:-39092000 | None:intergenic |
| CTTCTTCTGATTGACATAAC+CGG | 0.420142 | 4.4:-39092908 | None:intergenic |
| CTCTATTGCAGCCAGCAGAT+TGG | 0.421698 | 4.4:+39094415 | MS.gene28326:intron |
| ATGATGAAGATGATGGACTA+TGG | 0.427549 | 4.4:+39095071 | MS.gene28326:CDS |
| TCCACTTTCCCTTGTAGTTG+GGG | 0.429764 | 4.4:-39095238 | None:intergenic |
| TGCAGATATGGCAAAATGCT+TGG | 0.431842 | 4.4:-39092782 | None:intergenic |
| GTATTCTATTAAATTTGAAC+AGG | 0.436462 | 4.4:+39092849 | MS.gene28326:CDS |
| CTGTTCTTATTGGTCAACTC+TGG | 0.442357 | 4.4:-39092811 | None:intergenic |
| TTATCCTATTAGAAAGGATC+TGG | 0.449919 | 4.4:+39094007 | MS.gene28326:CDS |
| TGTTTGACTAGCCTGCTGAC+TGG | 0.450718 | 4.4:+39095047 | MS.gene28326:intron |
| ATTATCGACAAGGACACTAT+AGG | 0.464406 | 4.4:-39094087 | None:intergenic |
| TGGACTACAATCCAGAGAAA+AGG | 0.466192 | 4.4:-39096214 | None:intergenic |
| CTGGTAGCATGTACACAGAT+TGG | 0.467406 | 4.4:+39094123 | MS.gene28326:CDS |
| CCATGTTATATTGTCATACC+AGG | 0.473885 | 4.4:+39093977 | MS.gene28326:CDS |
| GGTTTCAGCACATAAAGATC+AGG | 0.477024 | 4.4:-39095590 | None:intergenic |
| CGAAAAGAGGAGGAGAGAGA+GGG | 0.477617 | 4.4:+39096151 | MS.gene28326:CDS |
| GTTTGACTAGCCTGCTGACT+GGG | 0.479098 | 4.4:+39095048 | MS.gene28326:intron |
| TGAAGAACCTTTCGTTTCCA+TGG | 0.479653 | 4.4:-39095130 | None:intergenic |
| AGGAAGGTACCTTTGTCATC+AGG | 0.480334 | 4.4:-39092291 | None:intergenic |
| CAAGAGAAGAGGGCGAAAAG+AGG | 0.485876 | 4.4:+39096138 | MS.gene28326:CDS |
| TTTGAATTTCAGGTAAAGGC+TGG | 0.487948 | 4.4:+39095769 | MS.gene28326:intron |
| GCTCGAAGGGCAAGAGAAGA+GGG | 0.503612 | 4.4:+39096128 | MS.gene28326:CDS |
| ATGCAGTTTGATGTTTGGAC+CGG | 0.506719 | 4.4:+39093926 | MS.gene28326:intron |
| TGGTAGCATGTACACAGATT+GGG | 0.507286 | 4.4:+39094124 | MS.gene28326:CDS |
| TTCGGATCAGGAATTTCCGC+TGG | 0.508027 | 4.4:-39094900 | None:intergenic |
| GCAGTAGATATGGAGATAAG+AGG | 0.516281 | 4.4:+39096174 | MS.gene28326:CDS |
| GTTTGTGTACCACATAGATC+CGG | 0.516433 | 4.4:-39093945 | None:intergenic |
| ACAACTTGCTTTGCATACTG+TGG | 0.516512 | 4.4:-39095826 | None:intergenic |
| TCTCTATCATCCCAATCTGC+TGG | 0.517078 | 4.4:-39094426 | None:intergenic |
| AAGATGGCTGGAAGAGTCGT+TGG | 0.518857 | 4.4:+39092193 | MS.gene28326:intron |
| GAAAAGAGGAGGAGAGAGAG+GGG | 0.519240 | 4.4:+39096152 | MS.gene28326:CDS |
| CCTTTGTCATCAGGATCAGC+AGG | 0.522682 | 4.4:-39092282 | None:intergenic |
| CAGGATATTGAGTGTGGTGG+TGG | 0.525477 | 4.4:+39092868 | MS.gene28326:CDS |
| GGCTCGAAGGGCAAGAGAAG+AGG | 0.530539 | 4.4:+39096127 | MS.gene28326:CDS |
| AATCAAGAACCCCAACTACA+AGG | 0.530823 | 4.4:+39095229 | MS.gene28326:CDS |
| AGATGGCTGGAAGAGTCGTT+GGG | 0.532596 | 4.4:+39092194 | MS.gene28326:intron |
| GGTACCTTTAAGTATACTGC+TGG | 0.536384 | 4.4:+39092252 | MS.gene28326:CDS |
| GACTGGGATGATGAAGATGA+TGG | 0.536970 | 4.4:+39095064 | MS.gene28326:CDS |
| ACCCCAACTACAAGGGAAAG+TGG | 0.537866 | 4.4:+39095237 | MS.gene28326:CDS |
| TAATAGGATAATTCTGCCCC+TGG | 0.538118 | 4.4:-39093995 | None:intergenic |
| CTCTTTCTCGATTATCGACA+AGG | 0.541665 | 4.4:-39094097 | None:intergenic |
| TTCGAAGAAGACTTCAGCAA+AGG | 0.543435 | 4.4:-39092026 | None:intergenic |
| CCTTCCTCCAAGGAAAATCA+AGG | 0.544194 | 4.4:+39094151 | MS.gene28326:CDS |
| GTCAATCAGAAGAAGTTTGG+CGG | 0.550880 | 4.4:+39092916 | MS.gene28326:CDS |
| GCAGAATTATCCTATTAGAA+AGG | 0.550971 | 4.4:+39094001 | MS.gene28326:CDS |
| AGGGAAAGTGGAAGACTCCA+TGG | 0.551615 | 4.4:+39095249 | MS.gene28326:CDS |
| AGGACACTATAGGAGGCATC+AGG | 0.553777 | 4.4:-39094077 | None:intergenic |
| TAATAGAATACTGAAGCACC+AGG | 0.555033 | 4.4:-39092837 | None:intergenic |
| TCTTCATCATCCCAGTCAGC+AGG | 0.556291 | 4.4:-39095058 | None:intergenic |
| TGTTGGCATTGAAGTGTGGC+AGG | 0.558687 | 4.4:+39095622 | MS.gene28326:CDS |
| GAGATAAGAGGCGCCGTAGG+AGG | 0.561496 | 4.4:+39096186 | MS.gene28326:CDS |
| ATTTCTATACATTCATTCTG+AGG | 0.562782 | 4.4:+39094054 | MS.gene28326:CDS |
| AAAAGGAGTGAAGGAAAAGC+AGG | 0.572283 | 4.4:+39092231 | MS.gene28326:CDS |
| ATGGAGATAAGAGGCGCCGT+AGG | 0.572887 | 4.4:+39096183 | MS.gene28326:CDS |
| CAACTTGCTTTGCATACTGT+GGG | 0.578363 | 4.4:-39095825 | None:intergenic |
| AAGAAGGGCTCGGGAAGAAG+AGG | 0.584687 | 4.4:+39096005 | MS.gene28326:CDS |
| TAATTATGTAGGAGGCTCGA+AGG | 0.586649 | 4.4:+39096114 | MS.gene28326:intron |
| GTACCTGGGTTATCAATCCA+TGG | 0.586860 | 4.4:-39095266 | None:intergenic |
| TCTGATTGGAAAAGGAGTGA+AGG | 0.589188 | 4.4:+39092222 | MS.gene28326:CDS |
| GAGAAGAGGGCGAAAAGAGG+AGG | 0.590636 | 4.4:+39096141 | MS.gene28326:CDS |
| ATCAAGAACCCCAACTACAA+GGG | 0.604238 | 4.4:+39095230 | MS.gene28326:CDS |
| AGAAAAGGCTTACCCTCCTA+CGG | 0.611772 | 4.4:-39096199 | None:intergenic |
| CTGAAACCAATAAAGTATGT+TGG | 0.613261 | 4.4:+39095605 | MS.gene28326:CDS |
| AGATAAGAGGCGCCGTAGGA+GGG | 0.614360 | 4.4:+39096187 | MS.gene28326:CDS |
| CCTGGTATGACAATATAACA+TGG | 0.616973 | 4.4:-39093977 | None:intergenic |
| AATTATGTAGGAGGCTCGAA+GGG | 0.625683 | 4.4:+39096115 | MS.gene28326:intron |
| TTCTTCGAAGAAACATTCCA+AGG | 0.625841 | 4.4:+39092040 | MS.gene28326:CDS |
| ATTGGGACATCCTTCCTCCA+AGG | 0.634489 | 4.4:+39094141 | MS.gene28326:CDS |
| ATCGACAAGGACACTATAGG+AGG | 0.637459 | 4.4:-39094084 | None:intergenic |
| ATGTTTGGACCGGATCTATG+TGG | 0.646001 | 4.4:+39093936 | MS.gene28326:CDS |
| CCTCTGGTTTGACATCATCA+GGG | 0.652041 | 4.4:-39094461 | None:intergenic |
| ATATATGGTTAATAATAGGG+AGG | 0.656632 | 4.4:+39095855 | MS.gene28326:CDS |
| CATGTTATATTGTCATACCA+GGG | 0.660252 | 4.4:+39093978 | MS.gene28326:CDS |
| TTTGAACAGGATATTGAGTG+TGG | 0.661470 | 4.4:+39092862 | MS.gene28326:CDS |
| ACAGTATGCAAAGCAAGTTG+TGG | 0.662036 | 4.4:+39095828 | MS.gene28326:CDS |
| CAGAGGACCATGGAAACGAA+AGG | 0.663800 | 4.4:+39095123 | MS.gene28326:CDS |
| GGGATATGATTCAATTCCAG+CGG | 0.666694 | 4.4:+39094884 | MS.gene28326:intron |
| ATGTTATATTGTCATACCAG+GGG | 0.671492 | 4.4:+39093979 | MS.gene28326:CDS |
| ATCCAGCATACAGAGGACCA+TGG | 0.675114 | 4.4:+39095113 | MS.gene28326:CDS |
| CCCTGATGATGTCAAACCAG+AGG | 0.679467 | 4.4:+39094461 | MS.gene28326:CDS |
| ATTCCTAATCCAGCATACAG+AGG | 0.680448 | 4.4:+39095106 | MS.gene28326:CDS |
| GACCAATAAGAACAGAACCC+TGG | 0.691427 | 4.4:+39092819 | MS.gene28326:CDS |
| AGTATGTTGGCATTGAAGTG+TGG | 0.694735 | 4.4:+39095618 | MS.gene28326:CDS |
| GAACAGGATATTGAGTGTGG+TGG | 0.695916 | 4.4:+39092865 | MS.gene28326:CDS |
| CCTGCTGATCCTGATGACAA+AGG | 0.699272 | 4.4:+39092282 | MS.gene28326:CDS |
| AATAGAATACTGAAGCACCA+GGG | 0.711638 | 4.4:-39092836 | None:intergenic |
| ACTCCATGGATTGATAACCC+AGG | 0.732011 | 4.4:+39095263 | MS.gene28326:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAAATTATCAAAATATAA+CGG | - | chr4.4:39095755-39095774 | None:intergenic | 10.0% |
| !!! | TACTATAATATACTATTTTT+AGG | - | chr4.4:39094759-39094778 | None:intergenic | 10.0% |
| !!! | TTTTATATATATTTCCTTAA+AGG | - | chr4.4:39094629-39094648 | None:intergenic | 10.0% |
| !! | AAAATATTAAACACGAAAAA+AGG | - | chr4.4:39095028-39095047 | None:intergenic | 15.0% |
| !! | AAGAATATATGGTTAATAAT+AGG | + | chr4.4:39095851-39095870 | MS.gene28326:CDS | 15.0% |
| !! | AGAATATATGGTTAATAATA+GGG | + | chr4.4:39095852-39095871 | MS.gene28326:CDS | 15.0% |
| !! | ATAAAAATTTGTAATGTTTC+AGG | - | chr4.4:39095527-39095546 | None:intergenic | 15.0% |
| !! | ATAGTATATTATAGTAAGAA+TGG | + | chr4.4:39094763-39094782 | MS.gene28326:intron | 15.0% |
| !! | ATTTGATGTTATAATTATGT+AGG | + | chr4.4:39096103-39096122 | MS.gene28326:intron | 15.0% |
| !! | TAAAAATTTGTAATGTTTCA+GGG | - | chr4.4:39095526-39095545 | None:intergenic | 15.0% |
| !! | TACATAATTATAACATCAAA+TGG | - | chr4.4:39096104-39096123 | None:intergenic | 15.0% |
| !! | TATATATAAAATTAGAAACC+TGG | + | chr4.4:39094638-39094657 | MS.gene28326:intron | 15.0% |
| !!! | ATAATCATATTTGTTTTTGA+AGG | + | chr4.4:39096074-39096093 | MS.gene28326:intron | 15.0% |
| !!! | ATTTTGATAATTTGAATTTC+AGG | + | chr4.4:39095759-39095778 | MS.gene28326:intron | 15.0% |
| !!! | TAAATTTTCCTATTAAAAAG+AGG | - | chr4.4:39093222-39093241 | None:intergenic | 15.0% |
| !!! | TAATCATATTTGTTTTTGAA+GGG | + | chr4.4:39096075-39096094 | MS.gene28326:intron | 15.0% |
| !!! | TTATTCTTTTTAAGTTTTGT+CGG | + | chr4.4:39094680-39094699 | MS.gene28326:intron | 15.0% |
| !! | AAAAAAAAAAAAAAGATGGC+TGG | + | chr4.4:39092181-39092200 | MS.gene28326:intron | 20.0% |
| !! | AAAAATTTGTAATGTTTCAG+GGG | - | chr4.4:39095525-39095544 | None:intergenic | 20.0% |
| !! | AAACAACTCAAACATTATAT+AGG | + | chr4.4:39094324-39094343 | MS.gene28326:intron | 20.0% |
| !! | AAATTTACAATGACATTGTA+TGG | - | chr4.4:39094816-39094835 | None:intergenic | 20.0% |
| !! | AATGAAAAGTGATTATTAGA+AGG | - | chr4.4:39092003-39092022 | None:intergenic | 20.0% |
| !! | AATTTACAATGACATTGTAT+GGG | - | chr4.4:39094815-39094834 | None:intergenic | 20.0% |
| !! | AGTTGTTACAAACTAAATAA+CGG | - | chr4.4:39095911-39095930 | None:intergenic | 20.0% |
| !! | ATTGAATGTAATCAATGTAT+CGG | + | chr4.4:39093750-39093769 | MS.gene28326:intron | 20.0% |
| !! | CAAAATTTATGTATAGCATA+TGG | + | chr4.4:39095438-39095457 | MS.gene28326:intron | 20.0% |
| !! | GTATTCTATTAAATTTGAAC+AGG | + | chr4.4:39092849-39092868 | MS.gene28326:CDS | 20.0% |
| !! | TATATATATTTCCTTAAAGG+TGG | - | chr4.4:39094626-39094645 | None:intergenic | 20.0% |
| !!! | AATCATATTTGTTTTTGAAG+GGG | + | chr4.4:39096076-39096095 | MS.gene28326:intron | 20.0% |
| !!! | ATAATTTGAATTTCAGGTAA+AGG | + | chr4.4:39095765-39095784 | MS.gene28326:intron | 20.0% |
| !!! | ATGTCATTGTAAATTTTAGT+TGG | + | chr4.4:39094820-39094839 | MS.gene28326:intron | 20.0% |
| !!! | CATATGCTATACATAAATTT+TGG | - | chr4.4:39095440-39095459 | None:intergenic | 20.0% |
| !!! | TATTCTTTTTAAGTTTTGTC+GGG | + | chr4.4:39094681-39094700 | MS.gene28326:intron | 20.0% |
| !!! | TCTAATTTTGATCAAACAAA+AGG | + | chr4.4:39093173-39093192 | MS.gene28326:intron | 20.0% |
| !!! | TGTGTATTTTAATTGTTTTG+TGG | + | chr4.4:39092973-39092992 | MS.gene28326:intron | 20.0% |
| !!! | TTTTTTCATATAAGCTATTC+CGG | + | chr4.4:39092511-39092530 | MS.gene28326:intron | 20.0% |
| ! | AAAGACTGTAGAATAACTAT+CGG | - | chr4.4:39093502-39093521 | None:intergenic | 25.0% |
| ! | AACCAATGAGAGAAATTTAA+AGG | - | chr4.4:39093476-39093495 | None:intergenic | 25.0% |
| ! | ACTAAATAAATACGCGTATT+TGG | + | chr4.4:39094978-39094997 | MS.gene28326:intron | 25.0% |
| ! | ACTTCTAAATTAGTGTTAGT+TGG | + | chr4.4:39094196-39094215 | MS.gene28326:intron | 25.0% |
| ! | AGCATTGTAACATTCAAATA+AGG | - | chr4.4:39094244-39094263 | None:intergenic | 25.0% |
| ! | ATAACACTAAAGGTCATATT+TGG | - | chr4.4:39092703-39092722 | None:intergenic | 25.0% |
| ! | ATATAATGCATTTGAGTAAG+AGG | - | chr4.4:39092319-39092338 | None:intergenic | 25.0% |
| ! | ATATATGGTTAATAATAGGG+AGG | + | chr4.4:39095855-39095874 | MS.gene28326:CDS | 25.0% |
| ! | ATATTTAAAAACAAGCAGAG+TGG | - | chr4.4:39095396-39095415 | None:intergenic | 25.0% |
| ! | ATCAAACTCTATAACACTAA+AGG | - | chr4.4:39092713-39092732 | None:intergenic | 25.0% |
| ! | ATCGTGTTAACTTTCTTTAT+TGG | + | chr4.4:39093551-39093570 | MS.gene28326:intron | 25.0% |
| ! | ATTTACAATGACATTGTATG+GGG | - | chr4.4:39094814-39094833 | None:intergenic | 25.0% |
| ! | ATTTCTATACATTCATTCTG+AGG | + | chr4.4:39094054-39094073 | MS.gene28326:CDS | 25.0% |
| ! | CACAAGTTATTTAATGTTGA+AGG | + | chr4.4:39093829-39093848 | MS.gene28326:intron | 25.0% |
| ! | GAGAGAAATTTAAAGGTAAA+TGG | - | chr4.4:39093469-39093488 | None:intergenic | 25.0% |
| ! | GCTTAAAAAATAATGTACCT+GGG | - | chr4.4:39095283-39095302 | None:intergenic | 25.0% |
| ! | TACCTTTAAATTTCTCTCAT+TGG | + | chr4.4:39093471-39093490 | MS.gene28326:intron | 25.0% |
| ! | TATAATGCATTTGAGTAAGA+GGG | - | chr4.4:39092318-39092337 | None:intergenic | 25.0% |
| ! | TCCTATTAAAAAGAGGAAAT+AGG | - | chr4.4:39093215-39093234 | None:intergenic | 25.0% |
| ! | TGATGTTATAATTATGTAGG+AGG | + | chr4.4:39096106-39096125 | MS.gene28326:intron | 25.0% |
| ! | TGCAATAGAGGAAAAAAAAA+AGG | - | chr4.4:39094405-39094424 | None:intergenic | 25.0% |
| ! | TGCTTAAAAAATAATGTACC+TGG | - | chr4.4:39095284-39095303 | None:intergenic | 25.0% |
| ! | TTCTCAAATTGTTATAGTGT+CGG | - | chr4.4:39093721-39093740 | None:intergenic | 25.0% |
| ! | TTCTGTTAGTTGATTAACAT+TGG | + | chr4.4:39092142-39092161 | MS.gene28326:intron | 25.0% |
| ! | TTTCTCTACCTTTAACTATT+GGG | + | chr4.4:39093519-39093538 | MS.gene28326:intron | 25.0% |
| !! | AACAAACAAACAAACCTTTT+TGG | - | chr4.4:39094928-39094947 | None:intergenic | 25.0% |
| !! | ACCTATTTCCTCTTTTTAAT+AGG | + | chr4.4:39093211-39093230 | MS.gene28326:intron | 25.0% |
| !! | AGAAGTACAAGAAAACATAA+AGG | - | chr4.4:39092126-39092145 | None:intergenic | 25.0% |
| !! | GTTTGAGATTTAGAAATTCT+TGG | + | chr4.4:39092995-39093014 | MS.gene28326:intron | 25.0% |
| !! | TGTGATATTGAACTGTTTTA+AGG | + | chr4.4:39095341-39095360 | MS.gene28326:intron | 25.0% |
| !! | TTTTTCATATAAGCTATTCC+GGG | + | chr4.4:39092512-39092531 | MS.gene28326:intron | 25.0% |
| !!! | AGGTACATTATTTTTTAAGC+AGG | + | chr4.4:39095283-39095302 | MS.gene28326:intron | 25.0% |
| !!! | ATTCTTTTTAAGTTTTGTCG+GGG | + | chr4.4:39094682-39094701 | MS.gene28326:intron | 25.0% |
| AAAGGATCTTGAAAAGTCAA+AGG | - | chr4.4:39092108-39092127 | None:intergenic | 30.0% | |
| AAGAAATCAACGAACCTATA+AGG | - | chr4.4:39092949-39092968 | None:intergenic | 30.0% | |
| AAGGAACTTATCTTCTAACA+GGG | + | chr4.4:39093343-39093362 | MS.gene28326:intron | 30.0% | |
| ATCAGTGTAATGTATTGAGT+AGG | + | chr4.4:39093881-39093900 | MS.gene28326:intron | 30.0% | |
| ATGTATAGCATATGGACATA+TGG | + | chr4.4:39095446-39095465 | MS.gene28326:intron | 30.0% | |
| ATGTGCATGTAAAACCTTAA+TGG | + | chr4.4:39094519-39094538 | MS.gene28326:intron | 30.0% | |
| ATGTTATATTGTCATACCAG+GGG | + | chr4.4:39093979-39093998 | MS.gene28326:CDS | 30.0% | |
| ATTACACTGATAGAACAACT+AGG | - | chr4.4:39093872-39093891 | None:intergenic | 30.0% | |
| CATGTTATATTGTCATACCA+GGG | + | chr4.4:39093978-39093997 | MS.gene28326:CDS | 30.0% | |
| CTAATTGTCTTGATATTGCA+GGG | + | chr4.4:39094864-39094883 | MS.gene28326:intron | 30.0% | |
| CTGAAACCAATAAAGTATGT+TGG | + | chr4.4:39095605-39095624 | MS.gene28326:CDS | 30.0% | |
| CTTTAGACTTGATATATGAC+AGG | - | chr4.4:39093441-39093460 | None:intergenic | 30.0% | |
| CTTTCTCTACCTTTAACTAT+TGG | + | chr4.4:39093518-39093537 | MS.gene28326:intron | 30.0% | |
| GAAGATTACCCAATAGTTAA+AGG | - | chr4.4:39093530-39093549 | None:intergenic | 30.0% | |
| GATTTAGAAATTCTTGGACT+TGG | + | chr4.4:39093001-39093020 | MS.gene28326:intron | 30.0% | |
| GCAAACAATAAAAAAGGCAA+AGG | - | chr4.4:39094499-39094518 | None:intergenic | 30.0% | |
| GCACATGCAAACAATAAAAA+AGG | - | chr4.4:39094505-39094524 | None:intergenic | 30.0% | |
| GCAGAATTATCCTATTAGAA+AGG | + | chr4.4:39094001-39094020 | MS.gene28326:CDS | 30.0% | |
| GCTTATACATAAGCACTTAT+AGG | - | chr4.4:39092456-39092475 | None:intergenic | 30.0% | |
| GGACAGTTTAATGATATGTT+TGG | - | chr4.4:39095419-39095438 | None:intergenic | 30.0% | |
| GTGGGGAAAAAAAATAATAG+AGG | - | chr4.4:39093109-39093128 | None:intergenic | 30.0% | |
| TATGTCAATCAGAAGAAGTT+TGG | + | chr4.4:39092913-39092932 | MS.gene28326:CDS | 30.0% | |
| TCAATGCCAACATACTTTAT+TGG | - | chr4.4:39095614-39095633 | None:intergenic | 30.0% | |
| TCAGTGTAATGTATTGAGTA+GGG | + | chr4.4:39093882-39093901 | MS.gene28326:intron | 30.0% | |
| TCATATGAGCGATAGATAAA+TGG | + | chr4.4:39094584-39094603 | MS.gene28326:intron | 30.0% | |
| TCTAATTGTCTTGATATTGC+AGG | + | chr4.4:39094863-39094882 | MS.gene28326:intron | 30.0% | |
| TGTTATTAGTTATTGCAGTC+TGG | + | chr4.4:39094279-39094298 | MS.gene28326:intron | 30.0% | |
| TTAAGTATACTGCTGGAAAA+TGG | + | chr4.4:39092259-39092278 | MS.gene28326:CDS | 30.0% | |
| TTATCCTATTAGAAAGGATC+TGG | + | chr4.4:39094007-39094026 | MS.gene28326:CDS | 30.0% | |
| ! | TCTTTATTGGTGCTTTAACA+TGG | + | chr4.4:39093564-39093583 | MS.gene28326:intron | 30.0% |
| ! | TTAAGCAGTTTTTCCAAACA+AGG | - | chr4.4:39092421-39092440 | None:intergenic | 30.0% |
| ! | TTTTCATATAAGCTATTCCG+GGG | + | chr4.4:39092513-39092532 | MS.gene28326:intron | 30.0% |
| ! | TTTTCCAGCAGTATACTTAA+AGG | - | chr4.4:39092259-39092278 | None:intergenic | 30.0% |
| !! | AAAAGAAGCTTTTGAAGAAG+CGG | + | chr4.4:39095975-39095994 | MS.gene28326:CDS | 30.0% |
| !!! | AAACAAACCTTTTTGGCTTT+CGG | - | chr4.4:39094921-39094940 | None:intergenic | 30.0% |
| AACCTTAATGACCACCTTTA+AGG | + | chr4.4:39094612-39094631 | MS.gene28326:intron | 35.0% | |
| AAGAAGCGGAAAAAGAAAGA+AGG | + | chr4.4:39095989-39096008 | MS.gene28326:CDS | 35.0% | |
| ACTTATTTCCATAAGTTCCC+CGG | - | chr4.4:39092533-39092552 | None:intergenic | 35.0% | |
| AGAAGCGGAAAAAGAAAGAA+GGG | + | chr4.4:39095990-39096009 | MS.gene28326:CDS | 35.0% | |
| AGAGATGATGAAGTTGAAGA+TGG | - | chr4.4:39092075-39092094 | None:intergenic | 35.0% | |
| ATGGTTAATAATAGGGAGGT+AGG | + | chr4.4:39095859-39095878 | MS.gene28326:intron | 35.0% | |
| ATTATCGACAAGGACACTAT+AGG | - | chr4.4:39094090-39094109 | None:intergenic | 35.0% | |
| CAAGGAACTTATCTTCTAAC+AGG | + | chr4.4:39093342-39093361 | MS.gene28326:intron | 35.0% | |
| CATGAAAGTTATCCATACCA+CGG | - | chr4.4:39094563-39094582 | None:intergenic | 35.0% | |
| CCATGTTATATTGTCATACC+AGG | + | chr4.4:39093977-39093996 | MS.gene28326:CDS | 35.0% | |
| CCTGGTATGACAATATAACA+TGG | - | chr4.4:39093980-39093999 | None:intergenic | 35.0% | |
| CTAAATTAGTGTTAGTTGGC+TGG | + | chr4.4:39094200-39094219 | MS.gene28326:intron | 35.0% | |
| CTTCTTCTGATTGACATAAC+CGG | - | chr4.4:39092911-39092930 | None:intergenic | 35.0% | |
| GAATTGACATTCATATCCCT+TGG | + | chr4.4:39095173-39095192 | MS.gene28326:intron | 35.0% | |
| GATAATCGAGAAAGAGATTC+TGG | + | chr4.4:39094104-39094123 | MS.gene28326:CDS | 35.0% | |
| GATCTTGAAAAGTCAAAGGT+AGG | - | chr4.4:39092104-39092123 | None:intergenic | 35.0% | |
| GCAAGTTGTGGAAGAATATA+TGG | + | chr4.4:39095840-39095859 | MS.gene28326:CDS | 35.0% | |
| GCTTAATGCAGTTTGATGTT+TGG | + | chr4.4:39093921-39093940 | MS.gene28326:intron | 35.0% | |
| GGTTACATCAAACTTCTTTC+CGG | + | chr4.4:39092889-39092908 | MS.gene28326:CDS | 35.0% | |
| TAATGAAAGTGACTCTAACC+AGG | - | chr4.4:39094659-39094678 | None:intergenic | 35.0% | |
| TACCACGGTAAAATTCTTAC+AGG | - | chr4.4:39094548-39094567 | None:intergenic | 35.0% | |
| TATCCCTTGGTTTCTAATTG+TGG | + | chr4.4:39095186-39095205 | MS.gene28326:intron | 35.0% | |
| TCACATGACAAGATCATTGA+GGG | - | chr4.4:39093137-39093156 | None:intergenic | 35.0% | |
| TTCCTTAAAGGTGGTCATTA+AGG | - | chr4.4:39094617-39094636 | None:intergenic | 35.0% | |
| TTCTTCGAAGAAACATTCCA+AGG | + | chr4.4:39092040-39092059 | MS.gene28326:CDS | 35.0% | |
| TTGCCACAATTAGAAACCAA+GGG | - | chr4.4:39095192-39095211 | None:intergenic | 35.0% | |
| TTTGAACAGGATATTGAGTG+TGG | + | chr4.4:39092862-39092881 | MS.gene28326:CDS | 35.0% | |
| TTTGCCACAATTAGAAACCA+AGG | - | chr4.4:39095193-39095212 | None:intergenic | 35.0% | |
| TTTGTTTCCTGCAGAATTTG+AGG | + | chr4.4:39095562-39095581 | MS.gene28326:intron | 35.0% | |
| ! | AACAAAAGGCTATTCTGAAG+AGG | + | chr4.4:39093187-39093206 | MS.gene28326:intron | 35.0% |
| ! | AATAGAATACTGAAGCACCA+GGG | - | chr4.4:39092839-39092858 | None:intergenic | 35.0% |
| ! | AGAATAGTGCTGAAGCATTA+AGG | - | chr4.4:39096044-39096063 | None:intergenic | 35.0% |
| ! | GTAAGAATTTTACCGTGGTA+TGG | + | chr4.4:39094548-39094567 | MS.gene28326:intron | 35.0% |
| ! | TAATAGAATACTGAAGCACC+AGG | - | chr4.4:39092840-39092859 | None:intergenic | 35.0% |
| ! | TAGTGTTTTACGATTCTTGC+AGG | + | chr4.4:39092739-39092758 | MS.gene28326:intron | 35.0% |
| ! | TTGACATCCTTGATTTTCCT+TGG | - | chr4.4:39094161-39094180 | None:intergenic | 35.0% |
| ! | TTTGAATTTCAGGTAAAGGC+TGG | + | chr4.4:39095769-39095788 | MS.gene28326:intron | 35.0% |
| !! | ATGATGAAGATGATGGACTA+TGG | + | chr4.4:39095071-39095090 | MS.gene28326:CDS | 35.0% |
| !! | GGGTTTTATCTGATTGGAAA+AGG | + | chr4.4:39092214-39092233 | MS.gene28326:CDS | 35.0% |
| !! | GTATGCTGGATTAGGAATTT+TGG | - | chr4.4:39095104-39095123 | None:intergenic | 35.0% |
| !! | TCAACTTTGAAGCATTGACA+CGG | + | chr4.4:39093666-39093685 | MS.gene28326:intron | 35.0% |
| !! | TTTTAGCTACATGCCTTGTT+TGG | + | chr4.4:39092405-39092424 | MS.gene28326:intron | 35.0% |
| !!! | TAAGCACTCGTGAGATTTTT+TGG | - | chr4.4:39092651-39092670 | None:intergenic | 35.0% |
| AAAAGGAGTGAAGGAAAAGC+AGG | + | chr4.4:39092231-39092250 | MS.gene28326:CDS | 40.0% | |
| AATCAAGAACCCCAACTACA+AGG | + | chr4.4:39095229-39095248 | MS.gene28326:CDS | 40.0% | |
| AATTATGTAGGAGGCTCGAA+GGG | + | chr4.4:39096115-39096134 | MS.gene28326:intron | 40.0% | |
| ACAGTATGCAAAGCAAGTTG+TGG | + | chr4.4:39095828-39095847 | MS.gene28326:CDS | 40.0% | |
| ATAGAACAACTAGGACAGTG+AGG | - | chr4.4:39093863-39093882 | None:intergenic | 40.0% | |
| ATCAAGAACCCCAACTACAA+GGG | + | chr4.4:39095230-39095249 | MS.gene28326:CDS | 40.0% | |
| ATGCAGTTTGATGTTTGGAC+CGG | + | chr4.4:39093926-39093945 | MS.gene28326:intron | 40.0% | |
| ATGCATTTGAGTAAGAGGGT+AGG | - | chr4.4:39092314-39092333 | None:intergenic | 40.0% | |
| ATTCCTAATCCAGCATACAG+AGG | + | chr4.4:39095106-39095125 | MS.gene28326:CDS | 40.0% | |
| ATTCTTACAGGTGGCCATTA+AGG | - | chr4.4:39094536-39094555 | None:intergenic | 40.0% | |
| ATTGAGTAGGGTGAACTGAT+TGG | + | chr4.4:39093894-39093913 | MS.gene28326:intron | 40.0% | |
| ATTTCAGCAGTAGCAAAGTG+TGG | - | chr4.4:39093633-39093652 | None:intergenic | 40.0% | |
| ATTTGAGTAAGAGGGTAGGA+AGG | - | chr4.4:39092310-39092329 | None:intergenic | 40.0% | |
| CAAGGATGTCAAAGCGAAAA+AGG | + | chr4.4:39094169-39094188 | MS.gene28326:CDS | 40.0% | |
| CACATGACAAGATCATTGAG+GGG | - | chr4.4:39093136-39093155 | None:intergenic | 40.0% | |
| CACGGTAAAATTCTTACAGG+TGG | - | chr4.4:39094545-39094564 | None:intergenic | 40.0% | |
| CACTCCAGATCCTTTCTAAT+AGG | - | chr4.4:39094014-39094033 | None:intergenic | 40.0% | |
| CTCACATGACAAGATCATTG+AGG | - | chr4.4:39093138-39093157 | None:intergenic | 40.0% | |
| CTCTGGTATCTTTGCAGATA+TGG | - | chr4.4:39092797-39092816 | None:intergenic | 40.0% | |
| CTCTTTCTCGATTATCGACA+AGG | - | chr4.4:39094100-39094119 | None:intergenic | 40.0% | |
| CTGTTCTTATTGGTCAACTC+TGG | - | chr4.4:39092814-39092833 | None:intergenic | 40.0% | |
| CTTATCTTCTAACAGGGTCA+AGG | + | chr4.4:39093349-39093368 | MS.gene28326:intron | 40.0% | |
| GAAGATGGTTTCAGTTACCT+TGG | - | chr4.4:39092060-39092079 | None:intergenic | 40.0% | |
| GCAGTAGATATGGAGATAAG+AGG | + | chr4.4:39096174-39096193 | MS.gene28326:CDS | 40.0% | |
| GGGATATGATTCAATTCCAG+CGG | + | chr4.4:39094884-39094903 | MS.gene28326:intron | 40.0% | |
| GGTACCTTTAAGTATACTGC+TGG | + | chr4.4:39092252-39092271 | MS.gene28326:CDS | 40.0% | |
| GGTTTCAGCACATAAAGATC+AGG | - | chr4.4:39095593-39095612 | None:intergenic | 40.0% | |
| GTCAATCAGAAGAAGTTTGG+CGG | + | chr4.4:39092916-39092935 | MS.gene28326:CDS | 40.0% | |
| GTTTGTGTACCACATAGATC+CGG | - | chr4.4:39093948-39093967 | None:intergenic | 40.0% | |
| TAAATACGCGTATTTGGCAC+AGG | + | chr4.4:39094984-39095003 | MS.gene28326:intron | 40.0% | |
| TAATAGGATAATTCTGCCCC+TGG | - | chr4.4:39093998-39094017 | None:intergenic | 40.0% | |
| TAATTATGTAGGAGGCTCGA+AGG | + | chr4.4:39096114-39096133 | MS.gene28326:intron | 40.0% | |
| TCGTCATCAATGATGAGCAA+TGG | - | chr4.4:39093046-39093065 | None:intergenic | 40.0% | |
| TCTGATTGGAAAAGGAGTGA+AGG | + | chr4.4:39092222-39092241 | MS.gene28326:CDS | 40.0% | |
| TGAAGAACCTTTCGTTTCCA+TGG | - | chr4.4:39095133-39095152 | None:intergenic | 40.0% | |
| TGCAGATATGGCAAAATGCT+TGG | - | chr4.4:39092785-39092804 | None:intergenic | 40.0% | |
| TGGTAGCATGTACACAGATT+GGG | + | chr4.4:39094124-39094143 | MS.gene28326:CDS | 40.0% | |
| TTCCACTTTCCCTTGTAGTT+GGG | - | chr4.4:39095242-39095261 | None:intergenic | 40.0% | |
| TTCGAAGAAGACTTCAGCAA+AGG | - | chr4.4:39092029-39092048 | None:intergenic | 40.0% | |
| ! | ACAACTTGCTTTGCATACTG+TGG | - | chr4.4:39095829-39095848 | None:intergenic | 40.0% |
| ! | ACATCCTTGATTTTCCTTGG+AGG | - | chr4.4:39094158-39094177 | None:intergenic | 40.0% |
| ! | AGTATGTTGGCATTGAAGTG+TGG | + | chr4.4:39095618-39095637 | MS.gene28326:CDS | 40.0% |
| ! | ATTGGTGCTTTAACATGGTC+AGG | + | chr4.4:39093569-39093588 | MS.gene28326:intron | 40.0% |
| ! | CAACTTGCTTTGCATACTGT+GGG | - | chr4.4:39095828-39095847 | None:intergenic | 40.0% |
| ! | CACCTGTAAGAATTTTACCG+TGG | + | chr4.4:39094543-39094562 | MS.gene28326:intron | 40.0% |
| ! | GTTTTGTCGGGGATCATAAA+TGG | + | chr4.4:39094693-39094712 | MS.gene28326:intron | 40.0% |
| ! | TATTGCAGTCTGGAACTCAA+AGG | + | chr4.4:39094289-39094308 | MS.gene28326:intron | 40.0% |
| !! | GAAGAAGAGGTAATGGATCA+AGG | + | chr4.4:39096018-39096037 | MS.gene28326:intron | 40.0% |
| !! | GCTGGATTAGGAATTTTGGA+AGG | - | chr4.4:39095100-39095119 | None:intergenic | 40.0% |
| !! | GTCGTTGGGTTTTATCTGAT+TGG | + | chr4.4:39092208-39092227 | MS.gene28326:CDS | 40.0% |
| !! | TAATCAATGTATCGGTGTCG+TGG | + | chr4.4:39093758-39093777 | MS.gene28326:intron | 40.0% |
| AAGATCATTGAGGGGAATGG+TGG | - | chr4.4:39093128-39093147 | None:intergenic | 45.0% | |
| AAGCTATTCCGGGGAACTTA+TGG | + | chr4.4:39092522-39092541 | MS.gene28326:intron | 45.0% | |
| AAGGTGACAACAAGTACCTC+TGG | - | chr4.4:39094480-39094499 | None:intergenic | 45.0% | |
| AGAAAAGGCTTACCCTCCTA+CGG | - | chr4.4:39096202-39096221 | None:intergenic | 45.0% | |
| AGATCATTGAGGGGAATGGT+GGG | - | chr4.4:39093127-39093146 | None:intergenic | 45.0% | |
| ATCGACAAGGACACTATAGG+AGG | - | chr4.4:39094087-39094106 | None:intergenic | 45.0% | |
| ATGTTTGGACCGGATCTATG+TGG | + | chr4.4:39093936-39093955 | MS.gene28326:CDS | 45.0% | |
| CACCAGGGTTCTGTTCTTAT+TGG | - | chr4.4:39092824-39092843 | None:intergenic | 45.0% | |
| CACGTAAGAGTTGAAGATGG+AGG | - | chr4.4:39093288-39093307 | None:intergenic | 45.0% | |
| CCTTCCTCCAAGGAAAATCA+AGG | + | chr4.4:39094151-39094170 | MS.gene28326:CDS | 45.0% | |
| CGGAAAAAGAAAGAAGGGCT+CGG | + | chr4.4:39095995-39096014 | MS.gene28326:CDS | 45.0% | |
| CTGGTAGCATGTACACAGAT+TGG | + | chr4.4:39094123-39094142 | MS.gene28326:CDS | 45.0% | |
| CTTCCACTTTCCCTTGTAGT+TGG | - | chr4.4:39095243-39095262 | None:intergenic | 45.0% | |
| GAACAGGATATTGAGTGTGG+TGG | + | chr4.4:39092865-39092884 | MS.gene28326:CDS | 45.0% | |
| GACAAGATCATTGAGGGGAA+TGG | - | chr4.4:39093131-39093150 | None:intergenic | 45.0% | |
| GACCAATAAGAACAGAACCC+TGG | + | chr4.4:39092819-39092838 | MS.gene28326:CDS | 45.0% | |
| GACTGGGATGATGAAGATGA+TGG | + | chr4.4:39095064-39095083 | MS.gene28326:CDS | 45.0% | |
| GGAAAAAGAAAGAAGGGCTC+GGG | + | chr4.4:39095996-39096015 | MS.gene28326:CDS | 45.0% | |
| GGACACGTAAGAGTTGAAGA+TGG | - | chr4.4:39093291-39093310 | None:intergenic | 45.0% | |
| GGATCATCCTCAAATTCTGC+AGG | - | chr4.4:39095572-39095591 | None:intergenic | 45.0% | |
| GTACCTGGGTTATCAATCCA+TGG | - | chr4.4:39095269-39095288 | None:intergenic | 45.0% | |
| GTAGTTCAAGTGGTTGAGCT+GGG | - | chr4.4:39093312-39093331 | None:intergenic | 45.0% | |
| TCAGCTTCTTTGAGCTGTGA+TGG | + | chr4.4:39095474-39095493 | MS.gene28326:intron | 45.0% | |
| TCCACTTTCCCTTGTAGTTG+GGG | - | chr4.4:39095241-39095260 | None:intergenic | 45.0% | |
| TCCTGATCCGAAAGCCAAAA+AGG | + | chr4.4:39094911-39094930 | MS.gene28326:CDS | 45.0% | |
| TCTATTGCAGCCAGCAGATT+GGG | + | chr4.4:39094416-39094435 | MS.gene28326:intron | 45.0% | |
| TCTCTATCATCCCAATCTGC+TGG | - | chr4.4:39094429-39094448 | None:intergenic | 45.0% | |
| TTGGCGGTGATACTCCTTAT+AGG | + | chr4.4:39092932-39092951 | MS.gene28326:CDS | 45.0% | |
| ! | ACCTCTGGTTTGACATCATC+AGG | - | chr4.4:39094465-39094484 | None:intergenic | 45.0% |
| ! | ACTCCATGGATTGATAACCC+AGG | + | chr4.4:39095263-39095282 | MS.gene28326:CDS | 45.0% |
| ! | CAACCACTCCTTTTCCCATT+AGG | + | chr4.4:39093378-39093397 | MS.gene28326:intron | 45.0% |
| ! | CCTCTGGTTTGACATCATCA+GGG | - | chr4.4:39094464-39094483 | None:intergenic | 45.0% |
| ! | CCTTGATTTTCCTTGGAGGA+AGG | - | chr4.4:39094154-39094173 | None:intergenic | 45.0% |
| !! | AGGAAGGTACCTTTGTCATC+AGG | - | chr4.4:39092294-39092313 | None:intergenic | 45.0% |
| !!! | ACCTTTTTGGCTTTCGGATC+AGG | - | chr4.4:39094915-39094934 | None:intergenic | 45.0% |
| !! | ATAAAAAAAAAAAAAAAAGA+TGG | + | chr4.4:39092177-39092196 | MS.gene28326:intron | 5.0% |
| !!! | TCTTTTTTTTTTTTTTTTAT+TGG | - | chr4.4:39092177-39092196 | None:intergenic | 5.0% |
| AAGATGGCTGGAAGAGTCGT+TGG | + | chr4.4:39092193-39092212 | MS.gene28326:intron | 50.0% | |
| ACCCCAACTACAAGGGAAAG+TGG | + | chr4.4:39095237-39095256 | MS.gene28326:CDS | 50.0% | |
| AGAGAGAGGGGCAGTAGATA+TGG | + | chr4.4:39096164-39096183 | MS.gene28326:CDS | 50.0% | |
| AGATGGCTGGAAGAGTCGTT+GGG | + | chr4.4:39092194-39092213 | MS.gene28326:intron | 50.0% | |
| AGGGAAAGTGGAAGACTCCA+TGG | + | chr4.4:39095249-39095268 | MS.gene28326:CDS | 50.0% | |
| ATCCAGCATACAGAGGACCA+TGG | + | chr4.4:39095113-39095132 | MS.gene28326:CDS | 50.0% | |
| ATTGGGACATCCTTCCTCCA+AGG | + | chr4.4:39094141-39094160 | MS.gene28326:CDS | 50.0% | |
| CAAGAGAAGAGGGCGAAAAG+AGG | + | chr4.4:39096138-39096157 | MS.gene28326:CDS | 50.0% | |
| CAGAGGACCATGGAAACGAA+AGG | + | chr4.4:39095123-39095142 | MS.gene28326:CDS | 50.0% | |
| CAGGATATTGAGTGTGGTGG+TGG | + | chr4.4:39092868-39092887 | MS.gene28326:CDS | 50.0% | |
| CCTGCTGATCCTGATGACAA+AGG | + | chr4.4:39092282-39092301 | MS.gene28326:CDS | 50.0% | |
| CCTTTGTCATCAGGATCAGC+AGG | - | chr4.4:39092285-39092304 | None:intergenic | 50.0% | |
| CGAAAAGAGGAGGAGAGAGA+GGG | + | chr4.4:39096151-39096170 | MS.gene28326:CDS | 50.0% | |
| CGTAGTTCAAGTGGTTGAGC+TGG | - | chr4.4:39093313-39093332 | None:intergenic | 50.0% | |
| CTCTATTGCAGCCAGCAGAT+TGG | + | chr4.4:39094415-39094434 | MS.gene28326:intron | 50.0% | |
| GAAAAGAGGAGGAGAGAGAG+GGG | + | chr4.4:39096152-39096171 | MS.gene28326:CDS | 50.0% | |
| GATCATTGAGGGGAATGGTG+GGG | - | chr4.4:39093126-39093145 | None:intergenic | 50.0% | |
| GGTCCTCTGTATGCTGGATT+AGG | - | chr4.4:39095112-39095131 | None:intergenic | 50.0% | |
| TCTTCATCATCCCAGTCAGC+AGG | - | chr4.4:39095061-39095080 | None:intergenic | 50.0% | |
| TTCCATGGTCCTCTGTATGC+TGG | - | chr4.4:39095118-39095137 | None:intergenic | 50.0% | |
| TTCGGATCAGGAATTTCCGC+TGG | - | chr4.4:39094903-39094922 | None:intergenic | 50.0% | |
| ! | ACTCCTTTTCCCATTAGGCG+GGG | + | chr4.4:39093383-39093402 | MS.gene28326:intron | 50.0% |
| ! | AGGAGGGTAAGCCTTTTCTC+TGG | + | chr4.4:39096203-39096222 | MS.gene28326:CDS | 50.0% |
| ! | CAATCTGCTGGCTGCAATAG+AGG | - | chr4.4:39094417-39094436 | None:intergenic | 50.0% |
| ! | CACTCCTTTTCCCATTAGGC+GGG | + | chr4.4:39093382-39093401 | MS.gene28326:intron | 50.0% |
| ! | CCACTCCTTTTCCCATTAGG+CGG | + | chr4.4:39093381-39093400 | MS.gene28326:intron | 50.0% |
| ! | CCCTGATGATGTCAAACCAG+AGG | + | chr4.4:39094461-39094480 | MS.gene28326:CDS | 50.0% |
| ! | TGTTGGCATTGAAGTGTGGC+AGG | + | chr4.4:39095622-39095641 | MS.gene28326:CDS | 50.0% |
| !! | AATGTATCGGTGTCGTGGCT+AGG | + | chr4.4:39093763-39093782 | MS.gene28326:intron | 50.0% |
| !! | AGGACACTATAGGAGGCATC+AGG | - | chr4.4:39094080-39094099 | None:intergenic | 50.0% |
| !! | GTTTGACTAGCCTGCTGACT+GGG | + | chr4.4:39095048-39095067 | MS.gene28326:intron | 50.0% |
| !! | TAGTGTCGGCGTTGCAATGT+TGG | - | chr4.4:39093707-39093726 | None:intergenic | 50.0% |
| !! | TGAAGCATTGACACGGACAC+CGG | + | chr4.4:39093673-39093692 | MS.gene28326:intron | 50.0% |
| !! | TGCAATGTTGGTGTCGTGTC+CGG | - | chr4.4:39093695-39093714 | None:intergenic | 50.0% |
| !! | TGTTTGACTAGCCTGCTGAC+TGG | + | chr4.4:39095047-39095066 | MS.gene28326:intron | 50.0% |
| AAGAAGGGCTCGGGAAGAAG+AGG | + | chr4.4:39096005-39096024 | MS.gene28326:CDS | 55.0% | |
| ATATAGCCGACCCCGCCTAA+TGG | - | chr4.4:39093396-39093415 | None:intergenic | 55.0% | |
| CCACTTGAACTACGCGCTGA+AGG | + | chr4.4:39093319-39093338 | MS.gene28326:intron | 55.0% | |
| CCGCCTAATGGGAAAAGGAG+TGG | - | chr4.4:39093384-39093403 | None:intergenic | 55.0% | |
| CCTTCAGCGCGTAGTTCAAG+TGG | - | chr4.4:39093322-39093341 | None:intergenic | 55.0% | |
| GAGAAGAGGGCGAAAAGAGG+AGG | + | chr4.4:39096141-39096160 | MS.gene28326:CDS | 55.0% | |
| GCGAAAAGAGGAGGAGAGAG+AGG | + | chr4.4:39096150-39096169 | MS.gene28326:CDS | 55.0% | |
| GCTCGAAGGGCAAGAGAAGA+GGG | + | chr4.4:39096128-39096147 | MS.gene28326:CDS | 55.0% | |
| GGCTCGGGAAGAAGAGGTAA+TGG | + | chr4.4:39096011-39096030 | MS.gene28326:intron | 55.0% | |
| TATAGCCGACCCCGCCTAAT+GGG | - | chr4.4:39093395-39093414 | None:intergenic | 55.0% | |
| TGAACTACGCGCTGAAGGCA+AGG | + | chr4.4:39093324-39093343 | MS.gene28326:intron | 55.0% | |
| ! | CTTTTCCCATTAGGCGGGGT+CGG | + | chr4.4:39093387-39093406 | MS.gene28326:intron | 55.0% |
| !! | AGATAAGAGGCGCCGTAGGA+GGG | + | chr4.4:39096187-39096206 | MS.gene28326:CDS | 55.0% |
| !! | ATGGAGATAAGAGGCGCCGT+AGG | + | chr4.4:39096183-39096202 | MS.gene28326:CDS | 55.0% |
| CGACCCCGCCTAATGGGAAA+AGG | - | chr4.4:39093389-39093408 | None:intergenic | 60.0% | |
| GGCTCGAAGGGCAAGAGAAG+AGG | + | chr4.4:39096127-39096146 | MS.gene28326:CDS | 60.0% | |
| !! | GAGATAAGAGGCGCCGTAGG+AGG | + | chr4.4:39096186-39096205 | MS.gene28326:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 39091959 | 39096232 | 39091959 | ID=MS.gene28326 |
| chr4.4 | mRNA | 39091959 | 39096232 | 39091959 | ID=MS.gene28326.t1;Parent=MS.gene28326 |
| chr4.4 | exon | 39091959 | 39092061 | 39091959 | ID=MS.gene28326.t1.exon1;Parent=MS.gene28326.t1 |
| chr4.4 | CDS | 39091959 | 39092061 | 39091959 | ID=cds.MS.gene28326.t1;Parent=MS.gene28326.t1 |
| chr4.4 | exon | 39092196 | 39092303 | 39092196 | ID=MS.gene28326.t1.exon2;Parent=MS.gene28326.t1 |
| chr4.4 | CDS | 39092196 | 39092303 | 39092196 | ID=cds.MS.gene28326.t1;Parent=MS.gene28326.t1 |
| chr4.4 | exon | 39092761 | 39092953 | 39092761 | ID=MS.gene28326.t1.exon3;Parent=MS.gene28326.t1 |
| chr4.4 | CDS | 39092761 | 39092953 | 39092761 | ID=cds.MS.gene28326.t1;Parent=MS.gene28326.t1 |
| chr4.4 | exon | 39093932 | 39094190 | 39093932 | ID=MS.gene28326.t1.exon4;Parent=MS.gene28326.t1 |
| chr4.4 | CDS | 39093932 | 39094190 | 39093932 | ID=cds.MS.gene28326.t1;Parent=MS.gene28326.t1 |
| chr4.4 | exon | 39094426 | 39094482 | 39094426 | ID=MS.gene28326.t1.exon5;Parent=MS.gene28326.t1 |
| chr4.4 | CDS | 39094426 | 39094482 | 39094426 | ID=cds.MS.gene28326.t1;Parent=MS.gene28326.t1 |
| chr4.4 | exon | 39094885 | 39094932 | 39094885 | ID=MS.gene28326.t1.exon6;Parent=MS.gene28326.t1 |
| chr4.4 | CDS | 39094885 | 39094932 | 39094885 | ID=cds.MS.gene28326.t1;Parent=MS.gene28326.t1 |
| chr4.4 | exon | 39095058 | 39095144 | 39095058 | ID=MS.gene28326.t1.exon7;Parent=MS.gene28326.t1 |
| chr4.4 | CDS | 39095058 | 39095144 | 39095058 | ID=cds.MS.gene28326.t1;Parent=MS.gene28326.t1 |
| chr4.4 | exon | 39095227 | 39095284 | 39095227 | ID=MS.gene28326.t1.exon8;Parent=MS.gene28326.t1 |
| chr4.4 | CDS | 39095227 | 39095284 | 39095227 | ID=cds.MS.gene28326.t1;Parent=MS.gene28326.t1 |
| chr4.4 | exon | 39095576 | 39095643 | 39095576 | ID=MS.gene28326.t1.exon9;Parent=MS.gene28326.t1 |
| chr4.4 | CDS | 39095576 | 39095643 | 39095576 | ID=cds.MS.gene28326.t1;Parent=MS.gene28326.t1 |
| chr4.4 | exon | 39095781 | 39095876 | 39095781 | ID=MS.gene28326.t1.exon10;Parent=MS.gene28326.t1 |
| chr4.4 | CDS | 39095781 | 39095876 | 39095781 | ID=cds.MS.gene28326.t1;Parent=MS.gene28326.t1 |
| chr4.4 | exon | 39095970 | 39096026 | 39095970 | ID=MS.gene28326.t1.exon11;Parent=MS.gene28326.t1 |
| chr4.4 | CDS | 39095970 | 39096026 | 39095970 | ID=cds.MS.gene28326.t1;Parent=MS.gene28326.t1 |
| chr4.4 | exon | 39096125 | 39096232 | 39096125 | ID=MS.gene28326.t1.exon12;Parent=MS.gene28326.t1 |
| chr4.4 | CDS | 39096125 | 39096232 | 39096125 | ID=cds.MS.gene28326.t1;Parent=MS.gene28326.t1 |
| Gene Sequence |
| Protein sequence |
