Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28544.t1 | XP_003629539.2 | 94.1 | 170 | 10 | 0 | 1 | 170 | 1 | 170 | 1.90E-86 | 328.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28544.t1 | F4K265 | 71.3 | 171 | 46 | 3 | 1 | 170 | 1 | 169 | 4.6e-65 | 248.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28544.t1 | G7LFM8 | 94.1 | 170 | 10 | 0 | 1 | 170 | 1 | 170 | 1.4e-86 | 328.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene28544 | -0.807425 | 5.09E-50 | -1.69E-46 |
| MS.gene051122 | MS.gene28544 | 0.815924 | 7.20E-52 | -1.69E-46 |
| MS.gene052954 | MS.gene28544 | 0.80997 | 1.45E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene28544 | 0.828715 | 7.71E-55 | -1.69E-46 |
| MS.gene054576 | MS.gene28544 | 0.800545 | 1.37E-48 | -1.69E-46 |
| MS.gene055864 | MS.gene28544 | 0.802593 | 5.21E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene28544 | 0.803671 | 3.12E-49 | -1.69E-46 |
| MS.gene058289 | MS.gene28544 | 0.809971 | 1.45E-50 | -1.69E-46 |
| MS.gene060191 | MS.gene28544 | 0.824822 | 6.55E-54 | -1.69E-46 |
| MS.gene060777 | MS.gene28544 | 0.808012 | 3.82E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene28544 | 0.810214 | 1.29E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene28544 | 0.805721 | 1.16E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28544.t1 | MTR_8g079240 | 94.118 | 170 | 10 | 0 | 1 | 170 | 1 | 170 | 1.17e-105 | 302 |
| MS.gene28544.t1 | MTR_8g079240 | 94.118 | 170 | 10 | 0 | 1 | 170 | 1 | 170 | 5.09e-105 | 299 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28544.t1 | AT5G66930 | 71.345 | 171 | 46 | 3 | 1 | 170 | 1 | 169 | 1.28e-84 | 249 |
| MS.gene28544.t1 | AT5G66930 | 78.723 | 141 | 28 | 2 | 1 | 140 | 1 | 140 | 3.25e-79 | 233 |
| MS.gene28544.t1 | AT5G66930 | 70.000 | 160 | 45 | 3 | 12 | 170 | 48 | 205 | 1.03e-76 | 230 |
Find 28 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTTCCAAGTCTACATCTT+TGG | 0.287870 | 8.4:-27635750 | None:intergenic |
| AGGCATCTTGGTTCAGTAAC+AGG | 0.296164 | 8.4:+27637003 | MS.gene28544:CDS |
| CAGGATTGAACGTTTGTATT+GGG | 0.340721 | 8.4:+27637022 | MS.gene28544:CDS |
| AGTTCCAAGTCTACATCTTT+GGG | 0.379580 | 8.4:-27635749 | None:intergenic |
| AATTGAGCAGTTTATTTGTT+GGG | 0.392401 | 8.4:+27636123 | MS.gene28544:CDS |
| CATTCTAAATTTGTTGATCC+AGG | 0.409933 | 8.4:+27637107 | MS.gene28544:CDS |
| ACAGGATTGAACGTTTGTAT+TGG | 0.421210 | 8.4:+27637021 | MS.gene28544:CDS |
| AAATTGAGCAGTTTATTTGT+TGG | 0.479900 | 8.4:+27636122 | MS.gene28544:CDS |
| TAGAATGCGATTTCAACTGC+TGG | 0.486426 | 8.4:-27637073 | None:intergenic |
| AACGTTTGTATTGGGAGCAA+TGG | 0.491465 | 8.4:+27637030 | MS.gene28544:CDS |
| GATATGCTTATCTTTCTATG+AGG | 0.522607 | 8.4:+27636968 | MS.gene28544:intron |
| GTCCTATACTTAGTGGTTGG+TGG | 0.523199 | 8.4:+27638227 | MS.gene28544:intron |
| GAAGGTTTACGAGTTCTTTG+AGG | 0.523933 | 8.4:-27635546 | None:intergenic |
| GTGGACATTTGCATGGAAGT+TGG | 0.535097 | 8.4:+27638246 | MS.gene28544:CDS |
| GGTGCAATGTGGAGAGGTGG+AGG | 0.545332 | 8.4:+27636078 | MS.gene28544:intron |
| TGAGCAGTTTATTTGTTGGG+TGG | 0.552749 | 8.4:+27636126 | MS.gene28544:CDS |
| CTCATGAGTAGATGGAACAT+TGG | 0.573528 | 8.4:+27637243 | MS.gene28544:intron |
| ATGAGTAGATGGAACATTGG+AGG | 0.574356 | 8.4:+27637246 | MS.gene28544:intron |
| GGTTTACGAGTTCTTTGAGG+TGG | 0.584455 | 8.4:-27635543 | None:intergenic |
| GTGGTTGGTGGACATTTGCA+TGG | 0.589976 | 8.4:+27638239 | MS.gene28544:intron |
| AGAATGCGATTTCAACTGCT+GGG | 0.602143 | 8.4:-27637072 | None:intergenic |
| TCTAAATTTGTTGATCCAGG+AGG | 0.611659 | 8.4:+27637110 | MS.gene28544:CDS |
| TGTGTAGGTGCAATGTGGAG+AGG | 0.615453 | 8.4:+27636072 | MS.gene28544:intron |
| GTAGGTGCAATGTGGAGAGG+TGG | 0.624583 | 8.4:+27636075 | MS.gene28544:intron |
| GCGTCCCAAAGATGTAGACT+TGG | 0.635808 | 8.4:+27635745 | MS.gene28544:CDS |
| TAATGGTGTGCAATATACAT+CGG | 0.648748 | 8.4:-27635697 | None:intergenic |
| ACTTGAAGTAGCACTTCGTG+AGG | 0.649855 | 8.4:+27637291 | MS.gene28544:CDS |
| TTTGTTGTGTAGGTGCAATG+TGG | 0.664472 | 8.4:+27636067 | MS.gene28544:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAGTATAAAATCATA+CGG | + | chr8.4:27636447-27636466 | MS.gene28544:intron | 10.0% |
| !! | TCATTAAATCAAATTAAATA+AGG | - | chr8.4:27638179-27638198 | None:intergenic | 10.0% |
| !! | AATCTTATGATATGTATTTA+CGG | + | chr8.4:27636841-27636860 | MS.gene28544:intron | 15.0% |
| !!! | AGTAACATATATTATTTTAG+AGG | + | chr8.4:27638063-27638082 | MS.gene28544:intron | 15.0% |
| !!! | ATATTTTGATATCTTTGATT+CGG | + | chr8.4:27637484-27637503 | MS.gene28544:intron | 15.0% |
| !! | AATGTTGATGTAAAATAAAC+AGG | + | chr8.4:27636877-27636896 | MS.gene28544:intron | 20.0% |
| !! | AATTGAGAAATGATTAAGAA+TGG | - | chr8.4:27635628-27635647 | None:intergenic | 20.0% |
| !! | ATAGTTAGCATTTGAATTTA+GGG | + | chr8.4:27636221-27636240 | MS.gene28544:intron | 20.0% |
| !! | ATATTCATGAAGATGTAAAT+TGG | - | chr8.4:27638038-27638057 | None:intergenic | 20.0% |
| !! | ATTGAGAAATGATTAAGAAT+GGG | - | chr8.4:27635627-27635646 | None:intergenic | 20.0% |
| !! | TAGACAAAATAAATAGATCA+TGG | - | chr8.4:27636321-27636340 | None:intergenic | 20.0% |
| !! | TTGAAATAAAAAACGTACAT+AGG | - | chr8.4:27635786-27635805 | None:intergenic | 20.0% |
| !!! | AAATTATACAAGTTGATGTA+TGG | - | chr8.4:27637588-27637607 | None:intergenic | 20.0% |
| !!! | TACATCAACTTGTATAATTT+TGG | + | chr8.4:27637588-27637607 | MS.gene28544:intron | 20.0% |
| !!! | TCCAAAAACTAATATTTTCT+TGG | - | chr8.4:27637826-27637845 | None:intergenic | 20.0% |
| !!! | TCCAAGAAAATATTAGTTTT+TGG | + | chr8.4:27637822-27637841 | MS.gene28544:intron | 20.0% |
| !!! | TGTAATCAAGTTTTCTTATT+GGG | + | chr8.4:27636926-27636945 | MS.gene28544:intron | 20.0% |
| !!! | TTGTAATCAAGTTTTCTTAT+TGG | + | chr8.4:27636925-27636944 | MS.gene28544:intron | 20.0% |
| !!! | TTTCAAGAAAGATTAGTTTT+TGG | + | chr8.4:27636660-27636679 | MS.gene28544:intron | 20.0% |
| !!! | TTTGTCTAAATACATCATTT+TGG | + | chr8.4:27636333-27636352 | MS.gene28544:intron | 20.0% |
| ! | AAATTGAGCAGTTTATTTGT+TGG | + | chr8.4:27636122-27636141 | MS.gene28544:CDS | 25.0% |
| ! | AATGTATGAGAGAAAATTAG+AGG | + | chr8.4:27637849-27637868 | MS.gene28544:intron | 25.0% |
| ! | AATTCTCCTTTATGTTTGAT+AGG | - | chr8.4:27636569-27636588 | None:intergenic | 25.0% |
| ! | AATTGAGCAGTTTATTTGTT+GGG | + | chr8.4:27636123-27636142 | MS.gene28544:CDS | 25.0% |
| ! | AGCAAAGATTAAGAAAATGA+TGG | - | chr8.4:27638149-27638168 | None:intergenic | 25.0% |
| ! | ATGTAAAATAAACAGGCATA+TGG | + | chr8.4:27636884-27636903 | MS.gene28544:intron | 25.0% |
| ! | CATAGTTAGCATTTGAATTT+AGG | + | chr8.4:27636220-27636239 | MS.gene28544:intron | 25.0% |
| ! | GATTTAATGAAAGTTGTTGT+GGG | + | chr8.4:27638189-27638208 | MS.gene28544:intron | 25.0% |
| ! | GGCAATATAAACTACAATAT+AGG | - | chr8.4:27637737-27637756 | None:intergenic | 25.0% |
| ! | TATGAGATGCATAATTACAA+CGG | - | chr8.4:27637454-27637473 | None:intergenic | 25.0% |
| ! | TGATTTAATGAAAGTTGTTG+TGG | + | chr8.4:27638188-27638207 | MS.gene28544:intron | 25.0% |
| ! | TGTAAAATAAACAGGCATAT+GGG | + | chr8.4:27636885-27636904 | MS.gene28544:intron | 25.0% |
| !! | AAACCAAATAAAAAGTGTAG+TGG | + | chr8.4:27637768-27637787 | MS.gene28544:intron | 25.0% |
| !! | AGAATTTAGTTTATCGAACA+AGG | - | chr8.4:27637148-27637167 | None:intergenic | 25.0% |
| !! | CTAGGTATTGTAATTTCATA+CGG | - | chr8.4:27637400-27637419 | None:intergenic | 25.0% |
| !! | GCACAATTTTACTAAAAAAC+TGG | - | chr8.4:27636040-27636059 | None:intergenic | 25.0% |
| !!! | AAACCAAATAAAAAGTGTTG+TGG | + | chr8.4:27636607-27636626 | MS.gene28544:intron | 25.0% |
| !!! | CGTTTTTTATATCTTTGAGT+CGG | + | chr8.4:27636360-27636379 | MS.gene28544:intron | 25.0% |
| !!! | TATCCACAACACTTTTTATT+TGG | - | chr8.4:27636613-27636632 | None:intergenic | 25.0% |
| !!! | TATCCACTACACTTTTTATT+TGG | - | chr8.4:27637774-27637793 | None:intergenic | 25.0% |
| !!! | TGCTAAATTTTTTGTTGTGT+AGG | + | chr8.4:27636057-27636076 | MS.gene28544:intron | 25.0% |
| AAAGATGTGAAAAATCACCT+AGG | + | chr8.4:27636725-27636744 | MS.gene28544:intron | 30.0% | |
| AAAGTGACAAATAAAGAGTG+AGG | - | chr8.4:27637213-27637232 | None:intergenic | 30.0% | |
| AAGTGACAAATAAAGAGTGA+GGG | - | chr8.4:27637212-27637231 | None:intergenic | 30.0% | |
| AATTACAACGGGATATGATT+GGG | - | chr8.4:27637442-27637461 | None:intergenic | 30.0% | |
| AGTTCTCCTTTATGTTTGAT+AGG | - | chr8.4:27637690-27637709 | None:intergenic | 30.0% | |
| ATGAGATGCATAATTACAAC+GGG | - | chr8.4:27637453-27637472 | None:intergenic | 30.0% | |
| CGTATGAAATTACAATACCT+AGG | + | chr8.4:27637398-27637417 | MS.gene28544:intron | 30.0% | |
| CTATGAGGTTAAAAACAAAC+AGG | + | chr8.4:27636983-27637002 | MS.gene28544:CDS | 30.0% | |
| CTTATTGAGTAAACATACCT+AGG | + | chr8.4:27637876-27637895 | MS.gene28544:intron | 30.0% | |
| GAAATCAGATATAGGATTCA+AGG | + | chr8.4:27637632-27637651 | MS.gene28544:intron | 30.0% | |
| GATATGCTTATCTTTCTATG+AGG | + | chr8.4:27636968-27636987 | MS.gene28544:intron | 30.0% | |
| GATTTGCCTATCAAACATAA+AGG | + | chr8.4:27636560-27636579 | MS.gene28544:intron | 30.0% | |
| TAACGCACGATGAAAAATAA+TGG | - | chr8.4:27635717-27635736 | None:intergenic | 30.0% | |
| TAATGGTGTGCAATATACAT+CGG | - | chr8.4:27635700-27635719 | None:intergenic | 30.0% | |
| TAATTACAACGGGATATGAT+TGG | - | chr8.4:27637443-27637462 | None:intergenic | 30.0% | |
| TACGGCAAGTTGTATAATTA+TGG | + | chr8.4:27636465-27636484 | MS.gene28544:intron | 30.0% | |
| TATATCTGATTTCCCAAAGA+AGG | - | chr8.4:27637625-27637644 | None:intergenic | 30.0% | |
| TTAAAAACAAACAGGCATCT+TGG | + | chr8.4:27636991-27637010 | MS.gene28544:CDS | 30.0% | |
| TTGTATTTCTCATGAGTAGA+TGG | + | chr8.4:27637235-27637254 | MS.gene28544:intron | 30.0% | |
| ! | GTATCTTTTGATCCTTCTTT+GGG | + | chr8.4:27637610-27637629 | MS.gene28544:intron | 30.0% |
| ! | TGAAAAAACTTCGCTCTAAA+TGG | + | chr8.4:27637961-27637980 | MS.gene28544:intron | 30.0% |
| ! | TGATGTGTTGTTGTCTTTAA+AGG | + | chr8.4:27637544-27637563 | MS.gene28544:intron | 30.0% |
| ! | TTCTTTGGGAAATCAGATAT+AGG | + | chr8.4:27637624-27637643 | MS.gene28544:intron | 30.0% |
| !! | ATTATTTTTCATCGTGCGTT+AGG | + | chr8.4:27635716-27635735 | MS.gene28544:CDS | 30.0% |
| !! | CATTCTAAATTTGTTGATCC+AGG | + | chr8.4:27637107-27637126 | MS.gene28544:CDS | 30.0% |
| !! | GGCGATAAATTCTATTTTGA+AGG | + | chr8.4:27638267-27638286 | MS.gene28544:CDS | 30.0% |
| !! | TACTGCAACCTATTTTTCAA+TGG | + | chr8.4:27637995-27638014 | MS.gene28544:intron | 30.0% |
| !! | TAGCTTTTCTACTGCTTTTA+CGG | - | chr8.4:27637938-27637957 | None:intergenic | 30.0% |
| !! | TATTTGGTTTGCACTTGAAT+GGG | - | chr8.4:27637758-27637777 | None:intergenic | 30.0% |
| !! | TTATTTGGTTTGCACTTGAA+TGG | - | chr8.4:27637759-27637778 | None:intergenic | 30.0% |
| AAATGCTAACTATGCGAACA+CGG | - | chr8.4:27636214-27636233 | None:intergenic | 35.0% | |
| AATGTCCTATACTTAGTGGT+TGG | + | chr8.4:27638224-27638243 | MS.gene28544:intron | 35.0% | |
| ACAGGATTGAACGTTTGTAT+TGG | + | chr8.4:27637021-27637040 | MS.gene28544:CDS | 35.0% | |
| ACATCCAAACAAAAAGAGTC+AGG | + | chr8.4:27636153-27636172 | MS.gene28544:CDS | 35.0% | |
| ACTCCTTTCATTAAAGCCAT+TGG | - | chr8.4:27636773-27636792 | None:intergenic | 35.0% | |
| ACTTCTGATTGAAAACGTGT+CGG | + | chr8.4:27635844-27635863 | MS.gene28544:intron | 35.0% | |
| AGAGTATACAGATCTTACCT+AGG | - | chr8.4:27637418-27637437 | None:intergenic | 35.0% | |
| AGGGTGATCCATTGAAAAAT+AGG | - | chr8.4:27638006-27638025 | None:intergenic | 35.0% | |
| AGTTCCAAGTCTACATCTTT+GGG | - | chr8.4:27635752-27635771 | None:intergenic | 35.0% | |
| ATCACACATAGGATTCAAGA+TGG | + | chr8.4:27636514-27636533 | MS.gene28544:intron | 35.0% | |
| ATCAGATATAGGATTCAAGG+TGG | + | chr8.4:27637635-27637654 | MS.gene28544:intron | 35.0% | |
| ATGTAAATTGGATTGACGCT+AGG | - | chr8.4:27638026-27638045 | None:intergenic | 35.0% | |
| CAGGATTGAACGTTTGTATT+GGG | + | chr8.4:27637022-27637041 | MS.gene28544:CDS | 35.0% | |
| CGATGTGATGTTGTCTTTAA+AGG | + | chr8.4:27636421-27636440 | MS.gene28544:intron | 35.0% | |
| CTGCAAACAGAGAATATGAT+AGG | - | chr8.4:27635817-27635836 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+AGG | - | chr8.4:27635567-27635586 | None:intergenic | 35.0% | |
| GAGAAATGATTAAGAATGGG+AGG | - | chr8.4:27635624-27635643 | None:intergenic | 35.0% | |
| GAGAACTGTACGAAACTATT+AGG | + | chr8.4:27637703-27637722 | MS.gene28544:intron | 35.0% | |
| GTTTGAAGAAGATCACACAT+AGG | + | chr8.4:27636503-27636522 | MS.gene28544:intron | 35.0% | |
| TAAACATACCTAGGACAGTT+TGG | + | chr8.4:27637885-27637904 | MS.gene28544:intron | 35.0% | |
| TAAATTCGTCAACGAGAAGA+AGG | + | chr8.4:27637330-27637349 | MS.gene28544:intron | 35.0% | |
| TAACATGACTAAATCGTCCT+AGG | - | chr8.4:27636745-27636764 | None:intergenic | 35.0% | |
| TCAGGTTAGATATTTGCTTG+TGG | + | chr8.4:27636171-27636190 | MS.gene28544:intron | 35.0% | |
| TGTAAATTGGATTGACGCTA+GGG | - | chr8.4:27638025-27638044 | None:intergenic | 35.0% | |
| TGTGAATGTCCTATACTTAG+TGG | + | chr8.4:27638220-27638239 | MS.gene28544:intron | 35.0% | |
| TGTGTGATCTTCTTCAAACA+TGG | - | chr8.4:27636502-27636521 | None:intergenic | 35.0% | |
| TTGTGGATATGAGAATGCTT+AGG | + | chr8.4:27636624-27636643 | MS.gene28544:intron | 35.0% | |
| ! | CAATTTCTTGTCTGTTTTGC+AGG | + | chr8.4:27635643-27635662 | MS.gene28544:intron | 35.0% |
| ! | CTAACCTGACTCTTTTTGTT+TGG | - | chr8.4:27636160-27636179 | None:intergenic | 35.0% |
| ! | GCTTGTGGATTTTTACTCTT+GGG | + | chr8.4:27636186-27636205 | MS.gene28544:intron | 35.0% |
| ! | GGTATCTTTTGATCCTTCTT+TGG | + | chr8.4:27637609-27637628 | MS.gene28544:intron | 35.0% |
| ! | TAGTGGATATGAGAATGCTA+AGG | + | chr8.4:27637785-27637804 | MS.gene28544:intron | 35.0% |
| ! | TGCTTGTGGATTTTTACTCT+TGG | + | chr8.4:27636185-27636204 | MS.gene28544:intron | 35.0% |
| ! | TTAAGAAAATGATGGCGAAG+AGG | - | chr8.4:27638141-27638160 | None:intergenic | 35.0% |
| !! | AATGGCTTTAATGAAAGGAG+TGG | + | chr8.4:27636772-27636791 | MS.gene28544:intron | 35.0% |
| !! | AGCTTTTCTACTGCTTTTAC+GGG | - | chr8.4:27637937-27637956 | None:intergenic | 35.0% |
| !! | AGTCCAATGGCTTTAATGAA+AGG | + | chr8.4:27636767-27636786 | MS.gene28544:intron | 35.0% |
| !! | ATTTAGGGTCAGTTCTAGAT+TGG | + | chr8.4:27636236-27636255 | MS.gene28544:intron | 35.0% |
| !! | TCTAAATTTGTTGATCCAGG+AGG | + | chr8.4:27637110-27637129 | MS.gene28544:CDS | 35.0% |
| AACGTTTGTATTGGGAGCAA+TGG | + | chr8.4:27637030-27637049 | MS.gene28544:CDS | 40.0% | |
| AATAAACAGGCATATGGGCA+AGG | + | chr8.4:27636890-27636909 | MS.gene28544:intron | 40.0% | |
| AGAATGCGATTTCAACTGCT+GGG | - | chr8.4:27637075-27637094 | None:intergenic | 40.0% | |
| AGGTGCGAATAGTAGGAAAA+GGG | - | chr8.4:27635604-27635623 | None:intergenic | 40.0% | |
| ATGAAAGTTGTTGTGGGTGT+TGG | + | chr8.4:27638195-27638214 | MS.gene28544:intron | 40.0% | |
| ATGAGTAGATGGAACATTGG+AGG | + | chr8.4:27637246-27637265 | MS.gene28544:intron | 40.0% | |
| ATTCATGACCAAACTGTCCT+AGG | - | chr8.4:27637896-27637915 | None:intergenic | 40.0% | |
| CTCATGAGTAGATGGAACAT+TGG | + | chr8.4:27637243-27637262 | MS.gene28544:intron | 40.0% | |
| CTTCTGATTGAAAACGTGTC+GGG | + | chr8.4:27635845-27635864 | MS.gene28544:intron | 40.0% | |
| GAAATAGCACCCTCTAGATT+TGG | - | chr8.4:27637373-27637392 | None:intergenic | 40.0% | |
| GAAGGTTTACGAGTTCTTTG+AGG | - | chr8.4:27635549-27635568 | None:intergenic | 40.0% | |
| GAGTTCCAAGTCTACATCTT+TGG | - | chr8.4:27635753-27635772 | None:intergenic | 40.0% | |
| GTGGATGAACAAATTGCTTG+TGG | + | chr8.4:27637654-27637673 | MS.gene28544:intron | 40.0% | |
| TAGAATGCGATTTCAACTGC+TGG | - | chr8.4:27637076-27637095 | None:intergenic | 40.0% | |
| TAGTCATGTTAGCAGTCCAA+TGG | + | chr8.4:27636754-27636773 | MS.gene28544:intron | 40.0% | |
| TGAAAGTTGTTGTGGGTGTT+GGG | + | chr8.4:27638196-27638215 | MS.gene28544:intron | 40.0% | |
| TGGATATGAGAATGCTTAGG+TGG | + | chr8.4:27636627-27636646 | MS.gene28544:intron | 40.0% | |
| ! | ACTTTTGTCTGTCTCGAACA+CGG | + | chr8.4:27635947-27635966 | MS.gene28544:intron | 40.0% |
| ! | TGAGCAGTTTATTTGTTGGG+TGG | + | chr8.4:27636126-27636145 | MS.gene28544:CDS | 40.0% |
| ! | TTTGTTGTGTAGGTGCAATG+TGG | + | chr8.4:27636067-27636086 | MS.gene28544:intron | 40.0% |
| !! | CTTTTCTACTGCTTTTACGG+GGG | - | chr8.4:27637935-27637954 | None:intergenic | 40.0% |
| !! | GCTTTTCTACTGCTTTTACG+GGG | - | chr8.4:27637936-27637955 | None:intergenic | 40.0% |
| !! | TTTTCTACTGCTTTTACGGG+GGG | - | chr8.4:27637934-27637953 | None:intergenic | 40.0% |
| ACACGTCTTCGATCAAAAGG+TGG | + | chr8.4:27635977-27635996 | MS.gene28544:intron | 45.0% | |
| ACTGTGCAAGTAGTTCCTTC+TGG | + | chr8.4:27637184-27637203 | MS.gene28544:intron | 45.0% | |
| ACTTGAAGTAGCACTTCGTG+AGG | + | chr8.4:27637291-27637310 | MS.gene28544:CDS | 45.0% | |
| AGGCATCTTGGTTCAGTAAC+AGG | + | chr8.4:27637003-27637022 | MS.gene28544:CDS | 45.0% | |
| CAGACACGTCTTCGATCAAA+AGG | + | chr8.4:27635974-27635993 | MS.gene28544:intron | 45.0% | |
| CCGCCAATACCAAATCTAGA+GGG | + | chr8.4:27637361-27637380 | MS.gene28544:intron | 45.0% | |
| GAATGATCGTTCTGCTTGGT+TGG | + | chr8.4:27636382-27636401 | MS.gene28544:intron | 45.0% | |
| GAGGTGCGAATAGTAGGAAA+AGG | - | chr8.4:27635605-27635624 | None:intergenic | 45.0% | |
| GGATGACTGTTCTGCTTTGT+TGG | + | chr8.4:27637505-27637524 | MS.gene28544:intron | 45.0% | |
| GGTGCGAATAGTAGGAAAAG+GGG | - | chr8.4:27635603-27635622 | None:intergenic | 45.0% | |
| GTCCACCAACCACTAAGTAT+AGG | - | chr8.4:27638232-27638251 | None:intergenic | 45.0% | |
| GTCCTATACTTAGTGGTTGG+TGG | + | chr8.4:27638227-27638246 | MS.gene28544:intron | 45.0% | |
| GTGCGAATAGTAGGAAAAGG+GGG | - | chr8.4:27635602-27635621 | None:intergenic | 45.0% | |
| GTGGACATTTGCATGGAAGT+TGG | + | chr8.4:27638246-27638265 | MS.gene28544:CDS | 45.0% | |
| TCCGCCAATACCAAATCTAG+AGG | + | chr8.4:27637360-27637379 | MS.gene28544:intron | 45.0% | |
| TGCGAATAGTAGGAAAAGGG+GGG | - | chr8.4:27635601-27635620 | None:intergenic | 45.0% | |
| ! | AGAAAATGATGGCGAAGAGG+CGG | - | chr8.4:27638138-27638157 | None:intergenic | 45.0% |
| ! | CCCTCTAGATTTGGTATTGG+CGG | - | chr8.4:27637364-27637383 | None:intergenic | 45.0% |
| ! | CTTTTGATCGAAGACGTGTC+TGG | - | chr8.4:27635976-27635995 | None:intergenic | 45.0% |
| ! | GCACCCTCTAGATTTGGTAT+TGG | - | chr8.4:27637367-27637386 | None:intergenic | 45.0% |
| ! | GGAGTGGAGTACTCTGTTAT+TGG | + | chr8.4:27636788-27636807 | MS.gene28544:intron | 45.0% |
| ! | GGTTTACGAGTTCTTTGAGG+TGG | - | chr8.4:27635546-27635565 | None:intergenic | 45.0% |
| AGGAAAGAAACTGCACCTCC+TGG | - | chr8.4:27637128-27637147 | None:intergenic | 50.0% | |
| GCGTCCCAAAGATGTAGACT+TGG | + | chr8.4:27635745-27635764 | MS.gene28544:CDS | 50.0% | |
| GTCGGAATGATCGTTCTGCT+TGG | + | chr8.4:27636378-27636397 | MS.gene28544:intron | 50.0% | |
| TGTGTAGGTGCAATGTGGAG+AGG | + | chr8.4:27636072-27636091 | MS.gene28544:intron | 50.0% | |
| ! | GAATGGGAGGTGCGAATAGT+AGG | - | chr8.4:27635611-27635630 | None:intergenic | 50.0% |
| !! | GTGGTTGGTGGACATTTGCA+TGG | + | chr8.4:27638239-27638258 | MS.gene28544:intron | 50.0% |
| !! | TAAAGAGTGAGGGTGCCAGA+AGG | - | chr8.4:27637202-27637221 | None:intergenic | 50.0% |
| GTAGGTGCAATGTGGAGAGG+TGG | + | chr8.4:27636075-27636094 | MS.gene28544:intron | 55.0% | |
| GGTGCAATGTGGAGAGGTGG+AGG | + | chr8.4:27636078-27636097 | MS.gene28544:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 27635526 | 27638317 | 27635526 | ID=MS.gene28544 |
| chr8.4 | mRNA | 27635526 | 27638317 | 27635526 | ID=MS.gene28544.t1;Parent=MS.gene28544 |
| chr8.4 | exon | 27635526 | 27635558 | 27635526 | ID=MS.gene28544.t1.exon1;Parent=MS.gene28544.t1 |
| chr8.4 | CDS | 27635526 | 27635558 | 27635526 | ID=cds.MS.gene28544.t1;Parent=MS.gene28544.t1 |
| chr8.4 | exon | 27635665 | 27635787 | 27635665 | ID=MS.gene28544.t1.exon2;Parent=MS.gene28544.t1 |
| chr8.4 | CDS | 27635665 | 27635787 | 27635665 | ID=cds.MS.gene28544.t1;Parent=MS.gene28544.t1 |
| chr8.4 | exon | 27636079 | 27636174 | 27636079 | ID=MS.gene28544.t1.exon3;Parent=MS.gene28544.t1 |
| chr8.4 | CDS | 27636079 | 27636174 | 27636079 | ID=cds.MS.gene28544.t1;Parent=MS.gene28544.t1 |
| chr8.4 | exon | 27636969 | 27637131 | 27636969 | ID=MS.gene28544.t1.exon4;Parent=MS.gene28544.t1 |
| chr8.4 | CDS | 27636969 | 27637131 | 27636969 | ID=cds.MS.gene28544.t1;Parent=MS.gene28544.t1 |
| chr8.4 | exon | 27637254 | 27637312 | 27637254 | ID=MS.gene28544.t1.exon5;Parent=MS.gene28544.t1 |
| chr8.4 | CDS | 27637254 | 27637312 | 27637254 | ID=cds.MS.gene28544.t1;Parent=MS.gene28544.t1 |
| chr8.4 | exon | 27638240 | 27638317 | 27638240 | ID=MS.gene28544.t1.exon6;Parent=MS.gene28544.t1 |
| chr8.4 | CDS | 27638240 | 27638317 | 27638240 | ID=cds.MS.gene28544.t1;Parent=MS.gene28544.t1 |
| Gene Sequence |
| Protein sequence |
