Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28865.t1 | XP_028787780.1 | 54.7 | 64 | 26 | 1 | 28 | 88 | 79 | 142 | 3.60E-10 | 74.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28865.t1 | Q0D7E4 | 70.0 | 40 | 12 | 0 | 51 | 90 | 95 | 134 | 5.2e-10 | 65.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28865.t1 | G7LGK5 | 81.6 | 38 | 7 | 0 | 51 | 88 | 104 | 141 | 7.5e-10 | 73.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04933 | MS.gene28865 | 0.82136 | 4.21E-53 | -1.69E-46 |
| MS.gene049681 | MS.gene28865 | 0.818389 | 2.01E-52 | -1.69E-46 |
| MS.gene050787 | MS.gene28865 | 0.81146 | 6.92E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene28865 | 0.807767 | 4.30E-50 | -1.69E-46 |
| MS.gene052711 | MS.gene28865 | 0.803517 | 3.36E-49 | -1.69E-46 |
| MS.gene054173 | MS.gene28865 | 0.809141 | 2.19E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene28865 | 0.81106 | 8.45E-51 | -1.69E-46 |
| MS.gene054473 | MS.gene28865 | 0.812562 | 3.98E-51 | -1.69E-46 |
| MS.gene055604 | MS.gene28865 | 0.817519 | 3.16E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene28865 | 0.800242 | 1.58E-48 | -1.69E-46 |
| MS.gene058710 | MS.gene28865 | 0.834131 | 3.58E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28865.t1 | MTR_3g088460 | 81.579 | 38 | 7 | 0 | 51 | 88 | 104 | 141 | 1.78e-15 | 72.0 |
| MS.gene28865.t1 | MTR_3g088460 | 81.579 | 38 | 7 | 0 | 51 | 88 | 104 | 141 | 1.85e-15 | 72.0 |
| MS.gene28865.t1 | MTR_3g088440 | 65.000 | 40 | 14 | 0 | 49 | 88 | 95 | 134 | 5.43e-12 | 62.0 |
| MS.gene28865.t1 | MTR_3g088440 | 65.000 | 40 | 14 | 0 | 49 | 88 | 95 | 134 | 5.83e-12 | 61.6 |
| MS.gene28865.t1 | MTR_2g020590 | 70.732 | 41 | 12 | 0 | 84 | 124 | 569 | 609 | 6.93e-12 | 61.6 |
| MS.gene28865.t1 | MTR_8g075280 | 91.429 | 35 | 2 | 1 | 4 | 37 | 129 | 163 | 1.05e-11 | 60.1 |
| MS.gene28865.t1 | MTR_8g075280 | 91.429 | 35 | 2 | 1 | 4 | 37 | 129 | 163 | 2.09e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAATCAGTACCTCTTC+CGG | 0.396980 | 8.2:+29788459 | None:intergenic |
| ATGGATATTAGCAGAGCTTT+CGG | 0.425234 | 8.2:-29788499 | MS.gene28865:CDS |
| GGTTTGTGACCGGATGTCTA+TGG | 0.448159 | 8.2:-29788518 | MS.gene28865:CDS |
| AGCTTTGACATCTATATTGT+GGG | 0.448584 | 8.2:-29788830 | MS.gene28865:CDS |
| AATTGAGGTCTTACCGGGAC+TGG | 0.449445 | 8.2:+29788752 | None:intergenic |
| ATACTCCGCTTTGCAGAGTT+CGG | 0.457488 | 8.2:+29788545 | None:intergenic |
| CAGCTGTTCCAAAACCGAAA+AGG | 0.470322 | 8.2:+29787059 | None:intergenic |
| TAGCTTTGACATCTATATTG+TGG | 0.480121 | 8.2:-29788831 | MS.gene28865:CDS |
| AAATGTTAACAGATTGGAAA+AGG | 0.481797 | 8.2:-29787112 | MS.gene28865:intron |
| TGCTAATATCCATAGACATC+CGG | 0.487696 | 8.2:+29788509 | None:intergenic |
| GGATATAATATTGATCCCTA+TGG | 0.491243 | 8.2:-29788809 | MS.gene28865:intron |
| GCAGGATCCTCAATTATGCT+TGG | 0.498328 | 8.2:-29788856 | MS.gene28865:intron |
| AGCTGTTCCAAAACCGAAAA+GGG | 0.506622 | 8.2:+29787060 | None:intergenic |
| AAGTGCCTATGCTGATTATG+TGG | 0.527720 | 8.2:-29788962 | MS.gene28865:CDS |
| AAAGGGCTACTCTTTCCCCT+TGG | 0.539127 | 8.2:+29787077 | None:intergenic |
| AGCTGCAGATACACCGGAAG+AGG | 0.539823 | 8.2:-29788472 | MS.gene28865:intron |
| AGCTATGCCAAGCATAATTG+AGG | 0.553176 | 8.2:+29788849 | None:intergenic |
| TTAAAAGAAGCACATGACAT+TGG | 0.559760 | 8.2:-29786580 | MS.gene28865:CDS |
| TCTGCAAAGCGGAGTATCCA+TGG | 0.565751 | 8.2:-29788539 | MS.gene28865:CDS |
| GAGTATCCATGGTTTGTGAC+CGG | 0.565764 | 8.2:-29788528 | MS.gene28865:CDS |
| AAGGAAGAATACTGATCCAA+GGG | 0.567645 | 8.2:-29787093 | MS.gene28865:CDS |
| TTAGAGGGAATTAATGAATG+AGG | 0.580115 | 8.2:-29789188 | None:intergenic |
| AAAGGAAGAATACTGATCCA+AGG | 0.584135 | 8.2:-29787094 | MS.gene28865:CDS |
| AGACATCCGGTCACAAACCA+TGG | 0.592177 | 8.2:+29788522 | None:intergenic |
| TCTTAGCACAAATCCAGTCC+CGG | 0.622585 | 8.2:-29788765 | MS.gene28865:intron |
| CCGCTTTGCAGAGTTCGGCA+AGG | 0.624173 | 8.2:+29788550 | None:intergenic |
| GGTCATAGCTGCAGATACAC+CGG | 0.626864 | 8.2:-29788478 | MS.gene28865:CDS |
| CTTACCCACATAATCAGCAT+AGG | 0.642322 | 8.2:+29788957 | None:intergenic |
| AGGAAGAATACTGATCCAAG+GGG | 0.672511 | 8.2:-29787092 | MS.gene28865:CDS |
| CCTTGCCGAACTCTGCAAAG+CGG | 0.678058 | 8.2:-29788550 | MS.gene28865:CDS |
| AGTGCCTATGCTGATTATGT+GGG | 0.682994 | 8.2:-29788961 | MS.gene28865:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr8.2:29787735-29787716 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr8.2:29787716-29787735 | MS.gene28865:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr8.2:29787734-29787715 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr8.2:29787715-29787734 | MS.gene28865:intron | 0.0% |
| !! | TAATGTAATTAAGTAAAATA+AGG | + | chr8.2:29788891-29788910 | None:intergenic | 10.0% |
| !!! | AAATTTAAGAAATATTTTAG+AGG | - | chr8.2:29788801-29788820 | MS.gene28865:intron | 10.0% |
| !!! | AATAACTTTTTATTGATAAA+TGG | - | chr8.2:29788273-29788292 | MS.gene28865:intron | 10.0% |
| !!! | AATTTAAGAAATATTTTAGA+GGG | - | chr8.2:29788802-29788821 | MS.gene28865:intron | 10.0% |
| !!! | AATTTTTTATTTTTTTTTGC+AGG | - | chr8.2:29786868-29786887 | MS.gene28865:intron | 10.0% |
| !!! | TATATGAAATATTTATTTTC+AGG | - | chr8.2:29786720-29786739 | MS.gene28865:intron | 10.0% |
| !!! | TATTGTTTAACTTAATTTAA+AGG | + | chr8.2:29787350-29787369 | None:intergenic | 10.0% |
| !! | ATTTACGCTAAAAAATATTT+GGG | - | chr8.2:29788097-29788116 | MS.gene28865:intron | 15.0% |
| !! | TATAACTAAAAAGTGAAAAT+AGG | + | chr8.2:29787586-29787605 | None:intergenic | 15.0% |
| !! | TGAATATAAAGATAAAAGTA+AGG | + | chr8.2:29787324-29787343 | None:intergenic | 15.0% |
| !!! | AAATACAATTCACTTTTATA+TGG | - | chr8.2:29787370-29787389 | MS.gene28865:intron | 15.0% |
| !!! | AAATATTTATTTTCAGGTAA+AGG | - | chr8.2:29786726-29786745 | MS.gene28865:intron | 15.0% |
| !!! | ATTTCATGGATAAATTTTTT+TGG | - | chr8.2:29788769-29788788 | MS.gene28865:intron | 15.0% |
| !!! | TTTTAATATTACAAAAAGTG+AGG | - | chr8.2:29786750-29786769 | MS.gene28865:intron | 15.0% |
| !! | AAACAATTATCAAATTACAC+TGG | - | chr8.2:29788406-29788425 | MS.gene28865:intron | 20.0% |
| !! | AACATTAAATGTTAATTTCG+TGG | + | chr8.2:29788607-29788626 | None:intergenic | 20.0% |
| !! | AATCAAATGTTGGTATATTT+AGG | - | chr8.2:29788830-29788849 | MS.gene28865:CDS | 20.0% |
| !! | ACATTAAATGTTAATTTCGT+GGG | + | chr8.2:29788606-29788625 | None:intergenic | 20.0% |
| !! | ATAAAAGACACTTTCATAAA+AGG | - | chr8.2:29787674-29787693 | MS.gene28865:intron | 20.0% |
| !! | ATCAAATGTTGGTATATTTA+GGG | - | chr8.2:29788831-29788850 | MS.gene28865:CDS | 20.0% |
| !! | CATAAAATATCAAATTCTGA+TGG | - | chr8.2:29787031-29787050 | MS.gene28865:intron | 20.0% |
| !! | CATTTACGCTAAAAAATATT+TGG | - | chr8.2:29788096-29788115 | MS.gene28865:intron | 20.0% |
| !! | TCATATTACAAAAATACTGT+TGG | - | chr8.2:29788327-29788346 | MS.gene28865:intron | 20.0% |
| !! | TTTACGCTAAAAAATATTTG+GGG | - | chr8.2:29788098-29788117 | MS.gene28865:intron | 20.0% |
| !!! | AAACCTTTTGTTTAAAACAT+TGG | - | chr8.2:29787075-29787094 | MS.gene28865:CDS | 20.0% |
| !!! | ACCAATTTTGATATAGAATA+AGG | - | chr8.2:29786592-29786611 | MS.gene28865:CDS | 20.0% |
| !!! | ATGTTTTAAACAAAAGGTTT+AGG | + | chr8.2:29787075-29787094 | None:intergenic | 20.0% |
| !!! | CCAATTTTGATATAGAATAA+GGG | - | chr8.2:29786593-29786612 | MS.gene28865:CDS | 20.0% |
| !!! | GTTTTATAATATTGTTACCA+TGG | + | chr8.2:29788180-29788199 | None:intergenic | 20.0% |
| !!! | TGAAGTATTTGTGTTAAAAA+TGG | + | chr8.2:29788555-29788574 | None:intergenic | 20.0% |
| ! | AAATGTTAACAGATTGGAAA+AGG | - | chr8.2:29788630-29788649 | MS.gene28865:intron | 25.0% |
| ! | AAATTGATTGTGGTAGTTAT+TGG | - | chr8.2:29788068-29788087 | MS.gene28865:intron | 25.0% |
| ! | AATTGATTGTGGTAGTTATT+GGG | - | chr8.2:29788069-29788088 | MS.gene28865:intron | 25.0% |
| ! | ACATCTTCATAAAAGTAAGT+TGG | - | chr8.2:29787619-29787638 | MS.gene28865:intron | 25.0% |
| ! | ACTTGCAATTATTTGTACTT+TGG | - | chr8.2:29788938-29788957 | MS.gene28865:intron | 25.0% |
| ! | ATGGATACAAAACTTATCAT+TGG | - | chr8.2:29788292-29788311 | MS.gene28865:intron | 25.0% |
| ! | ATGTTACCTAAAATTGATTG+TGG | - | chr8.2:29788058-29788077 | MS.gene28865:intron | 25.0% |
| ! | CCCTTATTCTATATCAAAAT+TGG | + | chr8.2:29786596-29786615 | None:intergenic | 25.0% |
| ! | CTTGCAATTATTTGTACTTT+GGG | - | chr8.2:29788939-29788958 | MS.gene28865:intron | 25.0% |
| ! | GTTATGAAATGTTAACAGAT+TGG | - | chr8.2:29788624-29788643 | MS.gene28865:intron | 25.0% |
| ! | TCATGCATAGTAAAATCTTA+TGG | + | chr8.2:29786650-29786669 | None:intergenic | 25.0% |
| ! | TTACTTATTTCACGTTAATG+TGG | + | chr8.2:29786620-29786639 | None:intergenic | 25.0% |
| ! | TTGTTTAATTAAAGTGCGTA+AGG | + | chr8.2:29788392-29788411 | None:intergenic | 25.0% |
| ! | TTTACGTAATATAGCATTTG+TGG | - | chr8.2:29788444-29788463 | MS.gene28865:intron | 25.0% |
| !! | TAACTACCACAATCAATTTT+AGG | + | chr8.2:29788067-29788086 | None:intergenic | 25.0% |
| !!! | AAAAAAAAGTATCACACTGA+TGG | + | chr8.2:29787126-29787145 | None:intergenic | 25.0% |
| !!! | ATCAATTTTAGTGTTCGTAA+TGG | - | chr8.2:29788992-29789011 | MS.gene28865:CDS | 25.0% |
| !!! | ATTTGTTGTTTGAATTTTGC+AGG | - | chr8.2:29787163-29787182 | MS.gene28865:intron | 25.0% |
| !!! | CATGGATAAATTTTTTTGGA+GGG | - | chr8.2:29788773-29788792 | MS.gene28865:intron | 25.0% |
| !!! | TCAATTTTAGTGTTCGTAAT+GGG | - | chr8.2:29788993-29789012 | MS.gene28865:CDS | 25.0% |
| !!! | TCACCAATGTTTTAAACAAA+AGG | + | chr8.2:29787081-29787100 | None:intergenic | 25.0% |
| !!! | TCATGGATAAATTTTTTTGG+AGG | - | chr8.2:29788772-29788791 | MS.gene28865:intron | 25.0% |
| AATATCAAATTCTGATGGCA+TGG | - | chr8.2:29787036-29787055 | MS.gene28865:intron | 30.0% | |
| ACACCTTCATAAAAAGTAGT+TGG | + | chr8.2:29787850-29787869 | None:intergenic | 30.0% | |
| ATAAAAGACACCTTCACAAA+AGG | + | chr8.2:29787795-29787814 | None:intergenic | 30.0% | |
| GGATATAATATTGATCCCTA+TGG | - | chr8.2:29786933-29786952 | MS.gene28865:intron | 30.0% | |
| TAGTAGAAGACATCAAAGAA+GGG | + | chr8.2:29786828-29786847 | None:intergenic | 30.0% | |
| ! | AATGTCATGTGCTTCTTTTA+AGG | + | chr8.2:29789163-29789182 | None:intergenic | 30.0% |
| ! | AGATTTTACTATGCATGATC+TGG | - | chr8.2:29786652-29786671 | MS.gene28865:intron | 30.0% |
| ! | AGCTTTGACATCTATATTGT+GGG | - | chr8.2:29786912-29786931 | MS.gene28865:intron | 30.0% |
| ! | ATGTCATGTGCTTCTTTTAA+GGG | + | chr8.2:29789162-29789181 | None:intergenic | 30.0% |
| ! | TGTAACATGGACTAATTTCA+TGG | - | chr8.2:29788755-29788774 | MS.gene28865:intron | 30.0% |
| ! | TTAAAAGAAGCACATGACAT+TGG | - | chr8.2:29789162-29789181 | MS.gene28865:intron | 30.0% |
| !! | TAAAAGGTGCTAAACTGAAA+TGG | - | chr8.2:29789061-29789080 | MS.gene28865:intron | 30.0% |
| !! | TAGCTTTGACATCTATATTG+TGG | - | chr8.2:29786911-29786930 | MS.gene28865:intron | 30.0% |
| !!! | ACACCAACTACTTTTTATGA+AGG | - | chr8.2:29787844-29787863 | MS.gene28865:intron | 30.0% |
| !!! | TGTTATTTTCTCTTTCACCA+TGG | - | chr8.2:29788160-29788179 | MS.gene28865:intron | 30.0% |
| AAAGAAATCAGTACCTCTTC+CGG | + | chr8.2:29787286-29787305 | None:intergenic | 35.0% | |
| AAAGGAAGAATACTGATCCA+AGG | - | chr8.2:29788648-29788667 | MS.gene28865:intron | 35.0% | |
| AAAGTGAAAATCACACCTTG+AGG | - | chr8.2:29787893-29787912 | MS.gene28865:intron | 35.0% | |
| AAGACCAAACAATGTGTTGA+GGG | + | chr8.2:29786961-29786980 | None:intergenic | 35.0% | |
| AAGGAAGAATACTGATCCAA+GGG | - | chr8.2:29788649-29788668 | MS.gene28865:intron | 35.0% | |
| ATGGATATTAGCAGAGCTTT+CGG | - | chr8.2:29787243-29787262 | MS.gene28865:intron | 35.0% | |
| CACCTTCATAAAAAGTAGTG+TGG | + | chr8.2:29787938-29787957 | None:intergenic | 35.0% | |
| GAGGGACTAAAATCAAATGT+TGG | - | chr8.2:29788820-29788839 | MS.gene28865:CDS | 35.0% | |
| GTAGTAGAAGACATCAAAGA+AGG | + | chr8.2:29786829-29786848 | None:intergenic | 35.0% | |
| TAAGACCAAACAATGTGTTG+AGG | + | chr8.2:29786962-29786981 | None:intergenic | 35.0% | |
| TATGTAAAACCCCCAGTAAA+AGG | - | chr8.2:29789045-29789064 | MS.gene28865:intron | 35.0% | |
| TGCTAATATCCATAGACATC+CGG | + | chr8.2:29787236-29787255 | None:intergenic | 35.0% | |
| TGTTAAAAGACACCACCAAA+GGG | + | chr8.2:29787556-29787575 | None:intergenic | 35.0% | |
| TTGTAACACAACCTCAATTG+AGG | + | chr8.2:29787008-29787027 | None:intergenic | 35.0% | |
| TTGTTAAAAGACACCACCAA+AGG | + | chr8.2:29787557-29787576 | None:intergenic | 35.0% | |
| ! | ATAGAAGACACCTTTTGTGA+AGG | - | chr8.2:29787782-29787801 | MS.gene28865:intron | 35.0% |
| ! | TCAGTTTAGCACCTTTTACT+GGG | + | chr8.2:29789059-29789078 | None:intergenic | 35.0% |
| ! | TTCAGTTTAGCACCTTTTAC+TGG | + | chr8.2:29789060-29789079 | None:intergenic | 35.0% |
| ! | TTTTATCAAGTCACACCTCA+AGG | + | chr8.2:29787911-29787930 | None:intergenic | 35.0% |
| !! | TCTTTTAAGGGCATATCTTC+TGG | + | chr8.2:29789150-29789169 | None:intergenic | 35.0% |
| !!! | CACCACACTACTTTTTATGA+AGG | - | chr8.2:29787933-29787952 | MS.gene28865:intron | 35.0% |
| !!! | TTTTTTTACAAGCCACCCTT+TGG | - | chr8.2:29787538-29787557 | MS.gene28865:intron | 35.0% |
| AACCTCAATTGAGGTCTTAC+CGG | + | chr8.2:29786999-29787018 | None:intergenic | 40.0% | |
| AATGGGTGCATGTTTCTTTG+CGG | - | chr8.2:29789010-29789029 | MS.gene28865:intron | 40.0% | |
| AGCTATGCCAAGCATAATTG+AGG | + | chr8.2:29786896-29786915 | None:intergenic | 40.0% | |
| AGCTGTTCCAAAACCGAAAA+GGG | + | chr8.2:29788685-29788704 | None:intergenic | 40.0% | |
| AGGAAGAATACTGATCCAAG+GGG | - | chr8.2:29788650-29788669 | MS.gene28865:intron | 40.0% | |
| CTCAAAATCAGACCCAAAAG+GGG | + | chr8.2:29789106-29789125 | None:intergenic | 40.0% | |
| CTTACCCACATAATCAGCAT+AGG | + | chr8.2:29786788-29786807 | None:intergenic | 40.0% | |
| GCTCAAAATCAGACCCAAAA+GGG | + | chr8.2:29789107-29789126 | None:intergenic | 40.0% | |
| TGCTCAAAATCAGACCCAAA+AGG | + | chr8.2:29789108-29789127 | None:intergenic | 40.0% | |
| ! | AAGTGCCTATGCTGATTATG+TGG | - | chr8.2:29786780-29786799 | MS.gene28865:intron | 40.0% |
| ! | AGCTGATGTTATTCCCCTTT+TGG | - | chr8.2:29789090-29789109 | MS.gene28865:intron | 40.0% |
| ! | AGTGCCTATGCTGATTATGT+GGG | - | chr8.2:29786781-29786800 | MS.gene28865:intron | 40.0% |
| ! | AGTTTAGCACCTTTTACTGG+GGG | + | chr8.2:29789057-29789076 | None:intergenic | 40.0% |
| ! | CAGTTTAGCACCTTTTACTG+GGG | + | chr8.2:29789058-29789077 | None:intergenic | 40.0% |
| ! | GCTGATGTTATTCCCCTTTT+GGG | - | chr8.2:29789091-29789110 | MS.gene28865:intron | 40.0% |
| !! | AATGTGTTGAGGGTACCATA+GGG | + | chr8.2:29786951-29786970 | None:intergenic | 40.0% |
| !! | TTTTGGGTCTGATTTTGAGC+AGG | - | chr8.2:29789107-29789126 | MS.gene28865:intron | 40.0% |
| ACCTCAATTGAGGTCTTACC+GGG | + | chr8.2:29786998-29787017 | None:intergenic | 45.0% | |
| ATACTCCGCTTTGCAGAGTT+CGG | + | chr8.2:29787200-29787219 | None:intergenic | 45.0% | |
| CAGCTGTTCCAAAACCGAAA+AGG | + | chr8.2:29788686-29788705 | None:intergenic | 45.0% | |
| GCAGGATCCTCAATTATGCT+TGG | - | chr8.2:29786886-29786905 | MS.gene28865:intron | 45.0% | |
| GGTACCCTCAACACATTGTT+TGG | - | chr8.2:29786954-29786973 | MS.gene28865:intron | 45.0% | |
| GTACTTTGGGCATGCAGATA+AGG | - | chr8.2:29788952-29788971 | MS.gene28865:intron | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | + | chr8.2:29787553-29787572 | None:intergenic | 45.0% | |
| TCTTAGCACAAATCCAGTCC+CGG | - | chr8.2:29786977-29786996 | MS.gene28865:intron | 45.0% | |
| ! | AGAGTAGCCCTTTTCGGTTT+TGG | - | chr8.2:29788675-29788694 | MS.gene28865:intron | 45.0% |
| ! | ATCATGGCTTGCGTGTAACA+TGG | - | chr8.2:29788742-29788761 | MS.gene28865:intron | 45.0% |
| ! | GAGTATCCATGGTTTGTGAC+CGG | - | chr8.2:29787214-29787233 | MS.gene28865:intron | 45.0% |
| ! | TTTTACAAGCCACCCTTTGG+TGG | - | chr8.2:29787541-29787560 | MS.gene28865:intron | 45.0% |
| !! | CAATGTGTTGAGGGTACCAT+AGG | + | chr8.2:29786952-29786971 | None:intergenic | 45.0% |
| !! | ATTATATATTAGTATAAAAT+AGG | + | chr8.2:29786851-29786870 | None:intergenic | 5.0% |
| !!! | TAAAATATTTCTTAAATTTT+TGG | + | chr8.2:29788800-29788819 | None:intergenic | 5.0% |
| AAAGGGCTACTCTTTCCCCT+TGG | + | chr8.2:29788668-29788687 | None:intergenic | 50.0% | |
| AATTGAGGTCTTACCGGGAC+TGG | + | chr8.2:29786993-29787012 | None:intergenic | 50.0% | |
| AGACATCCGGTCACAAACCA+TGG | + | chr8.2:29787223-29787242 | None:intergenic | 50.0% | |
| CAAGCCATGATGCTGCAACA+TGG | + | chr8.2:29788733-29788752 | None:intergenic | 50.0% | |
| GGTCATAGCTGCAGATACAC+CGG | - | chr8.2:29787264-29787283 | MS.gene28865:intron | 50.0% | |
| GGTTTGTGACCGGATGTCTA+TGG | - | chr8.2:29787224-29787243 | MS.gene28865:intron | 50.0% | |
| TCCCGGTAAGACCTCAATTG+AGG | - | chr8.2:29786994-29787013 | MS.gene28865:intron | 50.0% | |
| ! | GGGGAAAGAGTAGCCCTTTT+CGG | - | chr8.2:29788669-29788688 | MS.gene28865:intron | 50.0% |
| ! | TCTGCAAAGCGGAGTATCCA+TGG | - | chr8.2:29787203-29787222 | MS.gene28865:intron | 50.0% |
| AGCTGCAGATACACCGGAAG+AGG | - | chr8.2:29787270-29787289 | MS.gene28865:intron | 55.0% | |
| CCTTGCCGAACTCTGCAAAG+CGG | - | chr8.2:29787192-29787211 | MS.gene28865:intron | 55.0% | |
| GCCATGATGCTGCAACATGG+AGG | + | chr8.2:29788730-29788749 | None:intergenic | 55.0% | |
| GCCTCCATGTTGCAGCATCA+TGG | - | chr8.2:29788726-29788745 | MS.gene28865:intron | 55.0% | |
| CCGCTTTGCAGAGTTCGGCA+AGG | + | chr8.2:29787195-29787214 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 29786567 | 29789197 | 29786567 | ID=MS.gene28865 |
| chr8.2 | mRNA | 29786567 | 29789197 | 29786567 | ID=MS.gene28865.t1;Parent=MS.gene28865 |
| chr8.2 | exon | 29789189 | 29789197 | 29789189 | ID=MS.gene28865.t1.exon1;Parent=MS.gene28865.t1 |
| chr8.2 | CDS | 29789189 | 29789197 | 29789189 | ID=cds.MS.gene28865.t1;Parent=MS.gene28865.t1 |
| chr8.2 | exon | 29788962 | 29789022 | 29788962 | ID=MS.gene28865.t1.exon2;Parent=MS.gene28865.t1 |
| chr8.2 | CDS | 29788962 | 29789022 | 29788962 | ID=cds.MS.gene28865.t1;Parent=MS.gene28865.t1 |
| chr8.2 | exon | 29788810 | 29788874 | 29788810 | ID=MS.gene28865.t1.exon3;Parent=MS.gene28865.t1 |
| chr8.2 | CDS | 29788810 | 29788874 | 29788810 | ID=cds.MS.gene28865.t1;Parent=MS.gene28865.t1 |
| chr8.2 | exon | 29788766 | 29788781 | 29788766 | ID=MS.gene28865.t1.exon4;Parent=MS.gene28865.t1 |
| chr8.2 | CDS | 29788766 | 29788781 | 29788766 | ID=cds.MS.gene28865.t1;Parent=MS.gene28865.t1 |
| chr8.2 | exon | 29788473 | 29788579 | 29788473 | ID=MS.gene28865.t1.exon5;Parent=MS.gene28865.t1 |
| chr8.2 | CDS | 29788473 | 29788579 | 29788473 | ID=cds.MS.gene28865.t1;Parent=MS.gene28865.t1 |
| chr8.2 | exon | 29787048 | 29787122 | 29787048 | ID=MS.gene28865.t1.exon6;Parent=MS.gene28865.t1 |
| chr8.2 | CDS | 29787048 | 29787122 | 29787048 | ID=cds.MS.gene28865.t1;Parent=MS.gene28865.t1 |
| chr8.2 | exon | 29786567 | 29786635 | 29786567 | ID=MS.gene28865.t1.exon7;Parent=MS.gene28865.t1 |
| chr8.2 | CDS | 29786567 | 29786635 | 29786567 | ID=cds.MS.gene28865.t1;Parent=MS.gene28865.t1 |
| Gene Sequence |
| Protein sequence |
