Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74439.t1 | XP_003618847.2 | 97.7 | 744 | 17 | 0 | 23 | 766 | 32 | 775 | 0.00E+00 | 1433.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74439.t1 | P92942 | 75.5 | 747 | 174 | 3 | 23 | 761 | 31 | 776 | 0.0e+00 | 1137.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74439.t1 | G7KNP2 | 97.7 | 744 | 17 | 0 | 23 | 766 | 32 | 775 | 0.0e+00 | 1433.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene74439 | MS.gene71381 | PPI |
| MS.gene059333 | MS.gene74439 | PPI |
| MS.gene74439 | MS.gene013407 | PPI |
| MS.gene040402 | MS.gene74439 | PPI |
| MS.gene74439 | MS.gene013409 | PPI |
| MS.gene059335 | MS.gene74439 | PPI |
| MS.gene74439 | MS.gene047680 | PPI |
| MS.gene74439 | MS.gene074085 | PPI |
| MS.gene74439 | MS.gene031837 | PPI |
| MS.gene74439 | MS.gene28931 | PPI |
| MS.gene06506 | MS.gene74439 | PPI |
| MS.gene010407 | MS.gene74439 | PPI |
| MS.gene74439 | MS.gene049382 | PPI |
| MS.gene74439 | MS.gene059331 | PPI |
| MS.gene74439 | MS.gene041137 | PPI |
| MS.gene74439 | MS.gene06504 | PPI |
| MS.gene74439 | MS.gene79182 | PPI |
| MS.gene74439 | MS.gene58021 | PPI |
| MS.gene003381 | MS.gene74439 | PPI |
| MS.gene74439 | MS.gene052299 | PPI |
| MS.gene74439 | MS.gene036703 | PPI |
| MS.gene74439 | MS.gene62509 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74439.t1 | MTR_6g023770 | 97.124 | 765 | 22 | 0 | 2 | 766 | 11 | 775 | 0.0 | 1528 |
| MS.gene74439.t1 | MTR_6g023770 | 97.486 | 716 | 18 | 0 | 51 | 766 | 7 | 722 | 0.0 | 1433 |
| MS.gene74439.t1 | MTR_6g023770 | 97.678 | 646 | 15 | 0 | 121 | 766 | 1 | 646 | 0.0 | 1298 |
| MS.gene74439.t1 | MTR_7g029345 | 80.261 | 765 | 139 | 4 | 13 | 766 | 33 | 796 | 0.0 | 1260 |
| MS.gene74439.t1 | MTR_2g005410 | 52.727 | 770 | 345 | 8 | 1 | 760 | 1 | 761 | 0.0 | 780 |
| MS.gene74439.t1 | MTR_4g134730 | 53.405 | 749 | 336 | 6 | 19 | 760 | 33 | 775 | 0.0 | 766 |
| MS.gene74439.t1 | MTR_4g115640 | 52.507 | 758 | 345 | 8 | 15 | 763 | 10 | 761 | 0.0 | 745 |
| MS.gene74439.t1 | MTR_6g065650 | 50.938 | 746 | 353 | 7 | 21 | 760 | 55 | 793 | 0.0 | 741 |
| MS.gene74439.t1 | MTR_6g065650 | 51.455 | 653 | 305 | 6 | 114 | 760 | 1 | 647 | 0.0 | 648 |
| MS.gene74439.t1 | MTR_5g005990 | 46.047 | 721 | 363 | 12 | 43 | 745 | 44 | 756 | 0.0 | 580 |
| MS.gene74439.t1 | MTR_5g005990 | 46.047 | 721 | 363 | 12 | 43 | 745 | 44 | 756 | 0.0 | 579 |
| MS.gene74439.t1 | MTR_5g005990 | 46.047 | 721 | 363 | 12 | 43 | 745 | 44 | 756 | 0.0 | 579 |
| MS.gene74439.t1 | MTR_5g005990 | 47.010 | 602 | 295 | 10 | 161 | 745 | 12 | 606 | 5.81e-162 | 483 |
| MS.gene74439.t1 | MTR_5g005990 | 47.010 | 602 | 295 | 10 | 161 | 745 | 12 | 606 | 8.29e-162 | 483 |
| MS.gene74439.t1 | MTR_5g009580 | 43.750 | 160 | 74 | 3 | 435 | 594 | 2 | 145 | 3.25e-21 | 92.8 |
| MS.gene74439.t1 | MTR_5g009580 | 50.704 | 71 | 30 | 1 | 693 | 763 | 122 | 187 | 4.62e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74439.t1 | AT5G40890 | 76.216 | 761 | 178 | 2 | 2 | 760 | 11 | 770 | 0.0 | 1184 |
| MS.gene74439.t1 | AT3G27170 | 75.132 | 760 | 180 | 3 | 10 | 761 | 18 | 776 | 0.0 | 1179 |
| MS.gene74439.t1 | AT5G40890 | 76.995 | 639 | 144 | 2 | 124 | 760 | 1 | 638 | 0.0 | 1009 |
| MS.gene74439.t1 | AT5G49890 | 54.362 | 745 | 327 | 6 | 19 | 756 | 37 | 775 | 0.0 | 791 |
| MS.gene74439.t1 | AT5G33280 | 52.533 | 750 | 342 | 7 | 22 | 763 | 13 | 756 | 0.0 | 773 |
| MS.gene74439.t1 | AT5G26240 | 45.467 | 717 | 366 | 12 | 45 | 745 | 44 | 751 | 0.0 | 543 |
| MS.gene74439.t1 | AT5G26240 | 45.467 | 717 | 366 | 12 | 45 | 745 | 44 | 751 | 0.0 | 543 |
Find 157 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCTGTTGAGAATATTTC+AGG | 0.157177 | 6.4:-242545 | MS.gene74439:CDS |
| TTAAGATAAGCTTTGATTTC+AGG | 0.172574 | 6.4:+242073 | None:intergenic |
| TTATAGGTATCTCCTGTAAT+TGG | 0.173701 | 6.4:-237831 | MS.gene74439:intron |
| TTTCTTGTTGGACTTCTTAC+TGG | 0.181093 | 6.4:-242590 | MS.gene74439:CDS |
| TCCTCACTTGGCAAATTCTA+AGG | 0.190430 | 6.4:-237760 | MS.gene74439:CDS |
| GAAATCAAAGCTTATCTTAA+TGG | 0.203923 | 6.4:-242070 | MS.gene74439:CDS |
| CATTTACTCTTGTAGATAAT+TGG | 0.214153 | 6.4:-240255 | MS.gene74439:intron |
| TTCACACTATATTGCATATT+AGG | 0.228870 | 6.4:-238879 | MS.gene74439:CDS |
| ATATTAATCGGTTCCGGTTA+TGG | 0.236385 | 6.4:-238807 | MS.gene74439:CDS |
| CATGGTTTGTTAGCTGTTCT+TGG | 0.255803 | 6.4:-238741 | MS.gene74439:CDS |
| ATGAAGCTCCGCACGTTATT+AGG | 0.263208 | 6.4:+240070 | None:intergenic |
| GGACTGAGGAATGGGAAGTT+AGG | 0.277566 | 6.4:-238275 | MS.gene74439:CDS |
| GATGGGATTTCTATATTTCT+TGG | 0.279614 | 6.4:-242173 | MS.gene74439:CDS |
| CTGTTGTTGTGGTTGTTCTA+AGG | 0.288966 | 6.4:-239936 | MS.gene74439:CDS |
| TCAAATCCACTTGCTCTTGT+TGG | 0.290222 | 6.4:-243029 | MS.gene74439:CDS |
| ATATTAGGTTTAATCACTTT+TGG | 0.302883 | 6.4:-238864 | MS.gene74439:CDS |
| ATTGTTCCTGTTGCTATCAT+TGG | 0.313974 | 6.4:-239808 | MS.gene74439:CDS |
| ATGATTTGTTCAAGCAAGAT+TGG | 0.327111 | 6.4:-242670 | MS.gene74439:CDS |
| TCTTGGTGCAGCTTCCTTGA+TGG | 0.329813 | 6.4:-238724 | MS.gene74439:CDS |
| ATCATAGAATCAAATGGAAA+TGG | 0.331073 | 6.4:-240128 | MS.gene74439:CDS |
| CATTTGATTCTATGATTGTC+TGG | 0.334230 | 6.4:+240135 | None:intergenic |
| ATGGGATTTCTATATTTCTT+GGG | 0.336865 | 6.4:-242172 | MS.gene74439:CDS |
| AGCTGCATTGCTTCCTTACT+AGG | 0.340474 | 6.4:-240168 | MS.gene74439:CDS |
| TTTAGAAGTGGGTCATTCAT+TGG | 0.353705 | 6.4:+243071 | None:intergenic |
| TATTTGTGTAAGGTTTCATT+AGG | 0.356960 | 6.4:+238769 | None:intergenic |
| CAGCTTCCTATGTGTACTAA+TGG | 0.357302 | 6.4:+240186 | None:intergenic |
| TCGGGATCAGCATCCATAAA+AGG | 0.359346 | 6.4:+238537 | None:intergenic |
| ATCTTCTTCATAAGATCCTT+AGG | 0.361213 | 6.4:-239750 | MS.gene74439:CDS |
| TTGAAGAACACTACACATAA+TGG | 0.364217 | 6.4:-238414 | MS.gene74439:CDS |
| AAGTTTCTCATCCACGGTTC+GGG | 0.366928 | 6.4:+238519 | None:intergenic |
| CCTATCATATTAATCGGTTC+CGG | 0.368863 | 6.4:-238813 | MS.gene74439:CDS |
| CTTGTCAAGATCCCAATTAC+AGG | 0.372075 | 6.4:+237819 | None:intergenic |
| TTTGGCATTGCTGTTCCATC+AGG | 0.375918 | 6.4:-238846 | MS.gene74439:CDS |
| GCTTTGATTTCAGGTATTCC+TGG | 0.377213 | 6.4:+242082 | None:intergenic |
| TGTCCTACAAATGGAAAATC+AGG | 0.380627 | 6.4:-239044 | MS.gene74439:CDS |
| GGTGCAGCTTCCTTGATGGC+AGG | 0.386000 | 6.4:-238720 | MS.gene74439:CDS |
| TAGTTTCCGCGGCGTGGAAA+AGG | 0.386600 | 6.4:-238457 | MS.gene74439:CDS |
| TCCGAGGAGGCGTCCATAAC+CGG | 0.395962 | 6.4:+238794 | None:intergenic |
| AGAAGAACAATCATTGTTAT+CGG | 0.396565 | 6.4:+238630 | None:intergenic |
| CCATGATCAATATTTGTGTA+AGG | 0.405176 | 6.4:+238759 | None:intergenic |
| TGGTTATTTGCATTTCTTGT+TGG | 0.405978 | 6.4:-242602 | MS.gene74439:CDS |
| TGGTGTTACTAAAGAAGAAA+TGG | 0.406395 | 6.4:-238196 | MS.gene74439:CDS |
| GAAAAGGAGGACTGAGGAAT+GGG | 0.406567 | 6.4:-238283 | MS.gene74439:CDS |
| CCGGAACCGATTAATATGAT+AGG | 0.411041 | 6.4:+238813 | None:intergenic |
| TATAAACTCCTTACTGTTGT+TGG | 0.411697 | 6.4:-242521 | MS.gene74439:CDS |
| AGTTAGGGAGAAATTTAGTT+GGG | 0.414582 | 6.4:-238259 | MS.gene74439:CDS |
| ATCACATCAGTATGTCAATA+TGG | 0.415100 | 6.4:-239113 | MS.gene74439:CDS |
| CGGTAGCAAAAGAAGATTGT+TGG | 0.415583 | 6.4:+238650 | None:intergenic |
| TTGGATACATTCAACAAGAA+AGG | 0.423443 | 6.4:-242502 | MS.gene74439:intron |
| CGACTTGTCTGAAAAGGATC+CGG | 0.423467 | 6.4:+238097 | None:intergenic |
| GTTGCTATCATTGGAATCAT+TGG | 0.424857 | 6.4:-239799 | MS.gene74439:CDS |
| GACTGAGGAATGGGAAGTTA+GGG | 0.427820 | 6.4:-238274 | MS.gene74439:CDS |
| TAAGTTTCTCATCCACGGTT+CGG | 0.429018 | 6.4:+238518 | None:intergenic |
| CCTTACACAAATATTGATCA+TGG | 0.433080 | 6.4:-238759 | MS.gene74439:CDS |
| ATTATGTGTAGTGTTCTTCA+AGG | 0.435596 | 6.4:+238416 | None:intergenic |
| TTCATTGAACTTTGTCATGA+AGG | 0.437190 | 6.4:-239910 | MS.gene74439:CDS |
| GGAATCATTGGTGGTGTCTT+GGG | 0.437967 | 6.4:-239787 | MS.gene74439:CDS |
| TTATCAATGTGTCCTACAAA+TGG | 0.441358 | 6.4:-239053 | MS.gene74439:CDS |
| AAACAATTCAATTGTCCAAA+TGG | 0.442330 | 6.4:-239014 | MS.gene74439:CDS |
| GCTCCAACTGCTGCTGGACC+AGG | 0.447001 | 6.4:-242100 | MS.gene74439:CDS |
| TGCAATACATAATCTTGAAA+TGG | 0.449525 | 6.4:-242622 | MS.gene74439:CDS |
| ATACTCTCTAACACGGTAAA+CGG | 0.452426 | 6.4:+238135 | None:intergenic |
| AGGTCATTGTAATGGCCATT+TGG | 0.452481 | 6.4:+238999 | None:intergenic |
| TGGACCTCCTTGGCCTAGTA+AGG | 0.454375 | 6.4:+240155 | None:intergenic |
| GAAATTTAGTTGGGTTGAGT+TGG | 0.458957 | 6.4:-238250 | MS.gene74439:CDS |
| ATGATTCCAATGATAGCAAC+AGG | 0.459170 | 6.4:+239802 | None:intergenic |
| AAGTTAGGGAGAAATTTAGT+TGG | 0.461080 | 6.4:-238260 | MS.gene74439:CDS |
| TGGAATCATTGGTGGTGTCT+TGG | 0.462057 | 6.4:-239788 | MS.gene74439:CDS |
| TATAGGTATCTCCTGTAATT+GGG | 0.463801 | 6.4:-237830 | MS.gene74439:intron |
| TGTTGTTGTGGTTGTTCTAA+GGG | 0.467171 | 6.4:-239935 | MS.gene74439:CDS |
| ACTGTAGCACCATACATGTT+TGG | 0.469306 | 6.4:+242037 | None:intergenic |
| CAGACAATCATAGAATCAAA+TGG | 0.472741 | 6.4:-240134 | MS.gene74439:CDS |
| TCATAGAATCAAATGGAAAT+GGG | 0.475108 | 6.4:-240127 | MS.gene74439:CDS |
| AGAAAAGGAGGACTGAGGAA+TGG | 0.475415 | 6.4:-238284 | MS.gene74439:CDS |
| TATGATTGTCTGGACCTCCT+TGG | 0.475695 | 6.4:+240145 | None:intergenic |
| GTTGAGTTGGCTGAGAGAGA+AGG | 0.476587 | 6.4:-238237 | MS.gene74439:CDS |
| TCTTCTTCATAAGATCCTTA+GGG | 0.478357 | 6.4:-239749 | MS.gene74439:CDS |
| TCTAACTGCATCATCATTTG+TGG | 0.478902 | 6.4:+238959 | None:intergenic |
| ATAACGTGCGGAGCTTCATC+CGG | 0.480503 | 6.4:-240066 | MS.gene74439:CDS |
| AACGGAGTTGTATTAGTAAG+AGG | 0.483998 | 6.4:+238153 | None:intergenic |
| GACTTGTCTGAAAAGGATCC+GGG | 0.484758 | 6.4:+238098 | None:intergenic |
| TTCTATTCCTCTTTAGAAGT+GGG | 0.485308 | 6.4:+243060 | None:intergenic |
| GTACCGAAGTATCAAGCCTC+CGG | 0.488238 | 6.4:-238054 | MS.gene74439:CDS |
| GTTTCAGCAGGTCTAGACTT+AGG | 0.488980 | 6.4:-240219 | MS.gene74439:CDS |
| GTGCAGCTTCCTTGATGGCA+GGG | 0.493087 | 6.4:-238719 | MS.gene74439:CDS |
| TTGATACTGAGAGACTTAGA+AGG | 0.494892 | 6.4:+239138 | None:intergenic |
| TAAAAGTGCTTAAGAAGAAG+TGG | 0.498900 | 6.4:-238317 | MS.gene74439:CDS |
| TCCGGTTATGGACGCCTCCT+CGG | 0.498980 | 6.4:-238795 | MS.gene74439:CDS |
| TACCGAAGTATCAAGCCTCC+GGG | 0.505661 | 6.4:-238053 | MS.gene74439:CDS |
| TAGAAGAGGTTGCAAGTTGG+TGG | 0.509173 | 6.4:-239996 | MS.gene74439:CDS |
| TTGTGGATGCAGGTACTTGA+TGG | 0.511370 | 6.4:-242191 | MS.gene74439:intron |
| TGAATGACCCACTTCTAAAG+AGG | 0.516959 | 6.4:-243067 | MS.gene74439:CDS |
| CTTCAAGGCATCTACAATGT+TGG | 0.518026 | 6.4:+238431 | None:intergenic |
| TCTCATTGACCCTGCCATCA+AGG | 0.518494 | 6.4:+238710 | None:intergenic |
| TCATTGAACTTTGTCATGAA+GGG | 0.520123 | 6.4:-239909 | MS.gene74439:CDS |
| GGTCTAGACTTAGGAAAAGA+AGG | 0.522749 | 6.4:-240210 | MS.gene74439:CDS |
| ACCCCGGAGGCTTGATACTT+CGG | 0.527507 | 6.4:+238051 | None:intergenic |
| TTGCTGTTGAGAATATTTCA+GGG | 0.529034 | 6.4:-242544 | MS.gene74439:CDS |
| CCTCACTTGGCAAATTCTAA+GGG | 0.529946 | 6.4:-237759 | MS.gene74439:CDS |
| ACTTATCGATGTTAAATCAT+CGG | 0.530638 | 6.4:-238484 | MS.gene74439:CDS |
| AGCATAGGAGCTGTTTCAGC+AGG | 0.530901 | 6.4:-240231 | MS.gene74439:CDS |
| GAAGTCCGACTTGTCTGAAA+AGG | 0.531100 | 6.4:+238091 | None:intergenic |
| GTTCTATTCCTCTTTAGAAG+TGG | 0.532243 | 6.4:+243059 | None:intergenic |
| GAACGCTGCCGACCGGTGCT+CGG | 0.535675 | 6.4:+240028 | None:intergenic |
| TTGAGTTGGCTGAGAGAGAA+GGG | 0.539951 | 6.4:-238236 | MS.gene74439:CDS |
| GAATGTATCCAACAACAGTA+AGG | 0.541275 | 6.4:+242513 | None:intergenic |
| CCCTTAGAATTTGCCAAGTG+AGG | 0.548090 | 6.4:+237759 | None:intergenic |
| AGCTTCATCCGGTGTTTGCG+CGG | 0.552855 | 6.4:-240055 | MS.gene74439:CDS |
| TTTGCTCCAACAAGAGCAAG+TGG | 0.553142 | 6.4:+243023 | None:intergenic |
| GAAAAGAGAACGCTGCCGAC+CGG | 0.555821 | 6.4:+240021 | None:intergenic |
| GGTTGTTAGTTTCCGCGGCG+TGG | 0.556402 | 6.4:-238463 | MS.gene74439:CDS |
| GGGAACATTGAAGATGTTGT+TGG | 0.556934 | 6.4:-238216 | MS.gene74439:CDS |
| GAGATGATACTTCATTTGAA+AGG | 0.556971 | 6.4:-238564 | MS.gene74439:CDS |
| TTGCGCGGCTTTCCGAGCAC+CGG | 0.557923 | 6.4:-240040 | MS.gene74439:CDS |
| GCTATCATTGGAATCATTGG+TGG | 0.559699 | 6.4:-239796 | MS.gene74439:CDS |
| ATTGCTTCCTTACTAGGCCA+AGG | 0.560032 | 6.4:-240162 | MS.gene74439:CDS |
| GAAAGAGAAAAGGAGGACTG+AGG | 0.560078 | 6.4:-238289 | MS.gene74439:CDS |
| TTGTAGATAATTGGAAGCAT+AGG | 0.565624 | 6.4:-240246 | MS.gene74439:intron |
| TTGTAGCACAGCTGTTGTTG+TGG | 0.568013 | 6.4:-239947 | MS.gene74439:CDS |
| GCGGCTTTCCGAGCACCGGT+CGG | 0.568076 | 6.4:-240036 | MS.gene74439:CDS |
| CACATCAATGAATGAAAACA+TGG | 0.568773 | 6.4:-243129 | None:intergenic |
| GTTGAGATAGTAAAATTGCA+TGG | 0.571266 | 6.4:-238363 | MS.gene74439:CDS |
| AATTGGGATCTTGACAAGGC+AGG | 0.571504 | 6.4:-237814 | MS.gene74439:CDS |
| CTCTAGAAGAGGTTGCAAGT+TGG | 0.572319 | 6.4:-239999 | MS.gene74439:CDS |
| CTTCTCATAGCGAAAACCGT+TGG | 0.573502 | 6.4:-238612 | MS.gene74439:CDS |
| GTTGATACTCCAAACATGTA+TGG | 0.573662 | 6.4:-242046 | MS.gene74439:CDS |
| GATTGGAGAAGTAGATCAAG+AGG | 0.573791 | 6.4:-242653 | MS.gene74439:CDS |
| TGGATTGAAACTATCTCCAA+CGG | 0.578364 | 6.4:+238596 | None:intergenic |
| TCGGAAAGCCGCGCAAACAC+CGG | 0.578839 | 6.4:+240047 | None:intergenic |
| GTATGTCAGTAGCAAAAGCC+CGG | 0.580126 | 6.4:-238116 | MS.gene74439:CDS |
| TGATGAGATTATAAACCCTA+AGG | 0.584245 | 6.4:+239734 | None:intergenic |
| ATTCCTGGTCCAGCAGCAGT+TGG | 0.584448 | 6.4:+242097 | None:intergenic |
| TCATCGGTTGTTAGTTTCCG+CGG | 0.588305 | 6.4:-238468 | MS.gene74439:CDS |
| GAGTAGCTAGGTCATTGTAA+TGG | 0.593124 | 6.4:+238991 | None:intergenic |
| ACGGATAAGTTTCTCATCCA+CGG | 0.601847 | 6.4:+238513 | None:intergenic |
| CTGTAATTGGGATCTTGACA+AGG | 0.604557 | 6.4:-237818 | MS.gene74439:CDS |
| TCATCACCATCATCCATCAC+AGG | 0.610057 | 6.4:+238387 | None:intergenic |
| GTTGTTGTGGTTGTTCTAAG+GGG | 0.610678 | 6.4:-239934 | MS.gene74439:CDS |
| AAGGTTTCATTAGGATTCCG+AGG | 0.614036 | 6.4:+238778 | None:intergenic |
| TGGTGAGTAGAAGAGTAGCT+AGG | 0.615693 | 6.4:+238979 | None:intergenic |
| TGTGGATGCAGGTACTTGAT+GGG | 0.619489 | 6.4:-242190 | MS.gene74439:intron |
| AGTATCATCTCATAAACACT+TGG | 0.623736 | 6.4:+238576 | None:intergenic |
| CACATTGATAAATCATCACA+TGG | 0.624696 | 6.4:+239065 | None:intergenic |
| AACATCGATAAGTTCTCCGA+CGG | 0.627072 | 6.4:+238494 | None:intergenic |
| CTTTGTCATGAAGGGAAATG+TGG | 0.644144 | 6.4:-239901 | MS.gene74439:CDS |
| GAAGGTCCATTAGTACACAT+AGG | 0.663760 | 6.4:-240192 | MS.gene74439:CDS |
| GCTTCCTTACTAGGCCAAGG+AGG | 0.666145 | 6.4:-240159 | MS.gene74439:CDS |
| TGGATGAGAAACTTATCCGT+CGG | 0.675381 | 6.4:-238510 | MS.gene74439:CDS |
| TGGATGCTGATCCCGAACCG+TGG | 0.693651 | 6.4:-238530 | MS.gene74439:CDS |
| TACTGACATACTCTCTAACA+CGG | 0.697763 | 6.4:+238128 | None:intergenic |
| GTTTAATGAACTCACCCCGG+AGG | 0.703242 | 6.4:+238038 | None:intergenic |
| ATCAATGAATGAAAACATGG+AGG | 0.708106 | 6.4:-243126 | None:intergenic |
| GTTTCATTAGGATTCCGAGG+AGG | 0.719783 | 6.4:+238781 | None:intergenic |
| ACCGAAGTATCAAGCCTCCG+GGG | 0.721508 | 6.4:-238052 | MS.gene74439:intron |
| CGTCGTGACCTAATAACGTG+CGG | 0.726121 | 6.4:-240078 | MS.gene74439:CDS |
| GAAAATGGTTGATACTCATG+AGG | 0.728396 | 6.4:+238915 | None:intergenic |
| CGCACGTTATTAGGTCACGA+CGG | 0.763375 | 6.4:+240079 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr6.4:239220-239239 | MS.gene74439:intron | 0.0% |
| !! | ATTATAAAAATAAAATATAT+GGG | + | chr6.4:238403-238422 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr6.4:239219-239238 | MS.gene74439:intron | 0.0% |
| !!! | TTAAAATTAAATAATATTTT+TGG | + | chr6.4:239066-239085 | None:intergenic | 0.0% |
| !! | AAATATAATGATGTTATTAT+CGG | - | chr6.4:238584-238603 | MS.gene74439:CDS | 10.0% |
| !! | AAGATTAGATATATATATAT+AGG | + | chr6.4:239462-239481 | None:intergenic | 10.0% |
| !! | AGATTAGATATATATATATA+GGG | + | chr6.4:239461-239480 | None:intergenic | 10.0% |
| !! | TTGAAAAAAATGTTATAATT+CGG | - | chr6.4:241305-241324 | MS.gene74439:intron | 10.0% |
| !!! | AATTAAATAATATTTTTGGT+AGG | + | chr6.4:239062-239081 | None:intergenic | 10.0% |
| !!! | ACATTATTTTATATTTTTTG+AGG | + | chr6.4:240011-240030 | None:intergenic | 10.0% |
| !!! | ATTTTCCAAAAATTATATTA+AGG | - | chr6.4:239096-239115 | MS.gene74439:CDS | 10.0% |
| !!! | ATTTTTATAATGAGAAATTT+TGG | - | chr6.4:238412-238431 | MS.gene74439:CDS | 10.0% |
| !!! | CATTATTTTATATTTTTTGA+GGG | + | chr6.4:240010-240029 | None:intergenic | 10.0% |
| !!! | TTTTACTTAAAATAATTGAT+GGG | - | chr6.4:239633-239652 | MS.gene74439:intron | 10.0% |
| !!! | TTTTTACTTAAAATAATTGA+TGG | - | chr6.4:239632-239651 | MS.gene74439:intron | 10.0% |
| !! | AAAAATATCAAGATTGAAAA+TGG | + | chr6.4:241965-241984 | None:intergenic | 15.0% |
| !! | ATAAAAATAAAATATATGGG+AGG | + | chr6.4:238400-238419 | None:intergenic | 15.0% |
| !! | ATTAAATAACTTCAATTAAG+TGG | + | chr6.4:238125-238144 | None:intergenic | 15.0% |
| !! | TAAAAATAAAATATATGGGA+GGG | + | chr6.4:238399-238418 | None:intergenic | 15.0% |
| !! | TTTAACATTTGATTAAAAGA+TGG | - | chr6.4:239603-239622 | MS.gene74439:intron | 15.0% |
| !!! | ATATCTAATCTTAAAGTTTT+AGG | - | chr6.4:239470-239489 | MS.gene74439:intron | 15.0% |
| !!! | GTTATTGTTATTTTTGTAAA+AGG | - | chr6.4:240136-240155 | MS.gene74439:CDS | 15.0% |
| !!! | TTCAACCTTAATATAATTTT+TGG | + | chr6.4:239104-239123 | None:intergenic | 15.0% |
| !!! | TTTTTACCTATCATATTAAT+CGG | - | chr6.4:242043-242062 | MS.gene74439:CDS | 15.0% |
| !! | AAATATCAGATCATCATATT+AGG | + | chr6.4:239537-239556 | None:intergenic | 20.0% |
| !! | AACAAAATTCAAATCTCTTT+AGG | + | chr6.4:239012-239031 | None:intergenic | 20.0% |
| !! | ACAAAAACTTATATGATAAG+TGG | + | chr6.4:241475-241494 | None:intergenic | 20.0% |
| !! | ACAAAATTCAAATCTCTTTA+GGG | + | chr6.4:239011-239030 | None:intergenic | 20.0% |
| !! | ACCAAATAGATCAAATATAT+TGG | + | chr6.4:239578-239597 | None:intergenic | 20.0% |
| !! | TAGTAAATCATTTGAACTTT+AGG | + | chr6.4:240580-240599 | None:intergenic | 20.0% |
| !! | TCCAATATATTTGATCTATT+TGG | - | chr6.4:239574-239593 | MS.gene74439:intron | 20.0% |
| !! | TCTTTAGATTATGTGATTAA+TGG | - | chr6.4:241657-241676 | MS.gene74439:intron | 20.0% |
| !!! | ATATTAGGTTTAATCACTTT+TGG | - | chr6.4:241998-242017 | MS.gene74439:intron | 20.0% |
| !!! | TGTATGGTCTTATAATTATA+AGG | + | chr6.4:239035-239054 | None:intergenic | 20.0% |
| !!! | TGTCTATTGTCTTATTTAAT+AGG | - | chr6.4:239834-239853 | MS.gene74439:CDS | 20.0% |
| !!! | TTATGTTTTTGAAACGTATA+AGG | + | chr6.4:240093-240112 | None:intergenic | 20.0% |
| ! | AAAAACTGATAGAATGTTGT+AGG | + | chr6.4:243083-243102 | None:intergenic | 25.0% |
| ! | AAACAATTCAATTGTCCAAA+TGG | - | chr6.4:241848-241867 | MS.gene74439:intron | 25.0% |
| ! | AAGATCCTTCCTAAAAAAAA+GGG | - | chr6.4:238089-238108 | MS.gene74439:CDS | 25.0% |
| ! | AATCATAAATGTCTCATCTA+AGG | - | chr6.4:241183-241202 | MS.gene74439:intron | 25.0% |
| ! | ACTTATCGATGTTAAATCAT+CGG | - | chr6.4:242378-242397 | MS.gene74439:intron | 25.0% |
| ! | AGAAGAACAATCATTGTTAT+CGG | + | chr6.4:242235-242254 | None:intergenic | 25.0% |
| ! | ATCATAAATGTCTCATCTAA+GGG | - | chr6.4:241184-241203 | MS.gene74439:intron | 25.0% |
| ! | ATCATAGAATCAAATGGAAA+TGG | - | chr6.4:240734-240753 | MS.gene74439:intron | 25.0% |
| ! | ATGGGATTTCTATATTTCTT+GGG | - | chr6.4:238690-238709 | MS.gene74439:CDS | 25.0% |
| ! | CAAGAATCAAGAAAAGAAAT+TGG | - | chr6.4:239675-239694 | MS.gene74439:intron | 25.0% |
| ! | CATTTACTCTTGTAGATAAT+TGG | - | chr6.4:240607-240626 | MS.gene74439:intron | 25.0% |
| ! | GAAATCAAAGCTTATCTTAA+TGG | - | chr6.4:238792-238811 | MS.gene74439:CDS | 25.0% |
| ! | GACATTTATGATTTAACCTT+AGG | + | chr6.4:241176-241195 | None:intergenic | 25.0% |
| ! | TAAAATAAGTCGATCTAAAC+AGG | + | chr6.4:242881-242900 | None:intergenic | 25.0% |
| ! | TAAGCTGAAAAAACAACTTA+TGG | + | chr6.4:242972-242991 | None:intergenic | 25.0% |
| ! | TAATGCTAGATGTAGTAAAA+TGG | - | chr6.4:240160-240179 | MS.gene74439:CDS | 25.0% |
| ! | TATTTGTGTAAGGTTTCATT+AGG | + | chr6.4:242096-242115 | None:intergenic | 25.0% |
| ! | TCATAGAATCAAATGGAAAT+GGG | - | chr6.4:240735-240754 | MS.gene74439:intron | 25.0% |
| ! | TCTGACATTAACTCAAATTT+CGG | - | chr6.4:241607-241626 | MS.gene74439:intron | 25.0% |
| ! | TGCAATACATAATCTTGAAA+TGG | - | chr6.4:238240-238259 | MS.gene74439:CDS | 25.0% |
| ! | TTCACACTATATTGCATATT+AGG | - | chr6.4:241983-242002 | MS.gene74439:intron | 25.0% |
| ! | TTCATAATAGCTCAAAAACA+AGG | - | chr6.4:238061-238080 | MS.gene74439:CDS | 25.0% |
| ! | TTCATTATCATCTCAAAGAT+GGG | - | chr6.4:239738-239757 | MS.gene74439:CDS | 25.0% |
| ! | TTTCATTATCATCTCAAAGA+TGG | - | chr6.4:239737-239756 | MS.gene74439:CDS | 25.0% |
| !! | AATTAAGTTACTCATTTTGC+AGG | - | chr6.4:238159-238178 | MS.gene74439:CDS | 25.0% |
| !! | ACTACAATTTAAAACCTTGA+TGG | - | chr6.4:238642-238661 | MS.gene74439:CDS | 25.0% |
| !! | AGATGATAATGAAAAAGGTT+GGG | + | chr6.4:239731-239750 | None:intergenic | 25.0% |
| !! | CAATTTCTTTTCTTGATTCT+TGG | + | chr6.4:239677-239696 | None:intergenic | 25.0% |
| !! | TATAATGAGAGCATATCAAA+AGG | + | chr6.4:243016-243035 | None:intergenic | 25.0% |
| !! | TTAAGATAAGCTTTGATTTC+AGG | + | chr6.4:238792-238811 | None:intergenic | 25.0% |
| !! | TTTTGATATGCTCTCATTAT+AGG | - | chr6.4:243015-243034 | MS.gene74439:CDS | 25.0% |
| !!! | CTATAAGTTGATTATTCAGA+CGG | - | chr6.4:240331-240350 | MS.gene74439:intron | 25.0% |
| !!! | CTTTGAGATGATAATGAAAA+AGG | + | chr6.4:239736-239755 | None:intergenic | 25.0% |
| !!! | GTCACAATTATTTTTAACGA+AGG | + | chr6.4:238624-238643 | None:intergenic | 25.0% |
| !!! | TCATTCATTGGATTTTTTTC+TGG | + | chr6.4:237782-237801 | None:intergenic | 25.0% |
| AAGTAATCTCATCTAACCTA+AGG | - | chr6.4:241157-241176 | MS.gene74439:intron | 30.0% | |
| AAGTTAGGGAGAAATTTAGT+TGG | - | chr6.4:242602-242621 | MS.gene74439:CDS | 30.0% | |
| ACACCTTCATAAAAAGTAGT+TGG | + | chr6.4:239337-239356 | None:intergenic | 30.0% | |
| ACATAACAATCACACAAGAT+AGG | + | chr6.4:239817-239836 | None:intergenic | 30.0% | |
| AGTATCATCTCATAAACACT+TGG | + | chr6.4:242289-242308 | None:intergenic | 30.0% | |
| AGTTAGGGAGAAATTTAGTT+GGG | - | chr6.4:242603-242622 | MS.gene74439:CDS | 30.0% | |
| AGTTGAATTATGACCTAACA+CGG | - | chr6.4:240307-240326 | MS.gene74439:intron | 30.0% | |
| ATAAAAGACACCTTCACAAA+AGG | + | chr6.4:239282-239301 | None:intergenic | 30.0% | |
| ATCACATCAGTATGTCAATA+TGG | - | chr6.4:241749-241768 | MS.gene74439:intron | 30.0% | |
| ATCCACAATTTATACCATCA+AGG | + | chr6.4:238659-238678 | None:intergenic | 30.0% | |
| ATCTTCTTCATAAGATCCTT+AGG | - | chr6.4:241112-241131 | MS.gene74439:intron | 30.0% | |
| ATGAAGAACTAATGTAGACA+TGG | + | chr6.4:238046-238065 | None:intergenic | 30.0% | |
| ATTATGTGTAGTGTTCTTCA+AGG | + | chr6.4:242449-242468 | None:intergenic | 30.0% | |
| ATTTAATAGGACCACTATTG+TGG | - | chr6.4:239847-239866 | MS.gene74439:CDS | 30.0% | |
| CAAGAAAAGAAATTGGAAGT+AGG | - | chr6.4:239682-239701 | MS.gene74439:intron | 30.0% | |
| CAAGATCCTTCCTAAAAAAA+AGG | - | chr6.4:238088-238107 | MS.gene74439:CDS | 30.0% | |
| CACATTGATAAATCATCACA+TGG | + | chr6.4:241800-241819 | None:intergenic | 30.0% | |
| CAGACAATCATAGAATCAAA+TGG | - | chr6.4:240728-240747 | MS.gene74439:intron | 30.0% | |
| CATTAACTCAAATTTCGGAA+AGG | - | chr6.4:241612-241631 | MS.gene74439:intron | 30.0% | |
| CATTTGATTCTATGATTGTC+TGG | + | chr6.4:240730-240749 | None:intergenic | 30.0% | |
| CCATGATCAATATTTGTGTA+AGG | + | chr6.4:242106-242125 | None:intergenic | 30.0% | |
| CCTTACACAAATATTGATCA+TGG | - | chr6.4:242103-242122 | MS.gene74439:CDS | 30.0% | |
| GAGAATTTCTACTTTATTGC+AGG | - | chr6.4:241681-241700 | MS.gene74439:intron | 30.0% | |
| GAGATGATACTTCATTTGAA+AGG | - | chr6.4:242298-242317 | MS.gene74439:intron | 30.0% | |
| GATGGGATTTCTATATTTCT+TGG | - | chr6.4:238689-238708 | MS.gene74439:CDS | 30.0% | |
| GTCAATAGTATTCATGATGA+AGG | - | chr6.4:239959-239978 | MS.gene74439:CDS | 30.0% | |
| GTTGAGATAGTAAAATTGCA+TGG | - | chr6.4:242499-242518 | MS.gene74439:intron | 30.0% | |
| TAATCATATGTGGAAGACAT+CGG | - | chr6.4:241330-241349 | MS.gene74439:intron | 30.0% | |
| TATAAACTCCTTACTGTTGT+TGG | - | chr6.4:238341-238360 | MS.gene74439:CDS | 30.0% | |
| TATAGGTATCTCCTGTAATT+GGG | - | chr6.4:243032-243051 | MS.gene74439:CDS | 30.0% | |
| TCATTATCATCTCAAAGATG+GGG | - | chr6.4:239739-239758 | MS.gene74439:CDS | 30.0% | |
| TCATTGAACTTTGTCATGAA+GGG | - | chr6.4:240953-240972 | MS.gene74439:intron | 30.0% | |
| TCTTCTTCATAAGATCCTTA+GGG | - | chr6.4:241113-241132 | MS.gene74439:intron | 30.0% | |
| TCTTGATTCTTGGAGTTATT+GGG | + | chr6.4:239667-239686 | None:intergenic | 30.0% | |
| TGATGAGATTATAAACCCTA+AGG | + | chr6.4:241131-241150 | None:intergenic | 30.0% | |
| TGATGTTCAAATCACATATG+CGG | - | chr6.4:239501-239520 | MS.gene74439:intron | 30.0% | |
| TGGTTATTTGCATTTCTTGT+TGG | - | chr6.4:238260-238279 | MS.gene74439:CDS | 30.0% | |
| TTATAGGTATCTCCTGTAAT+TGG | - | chr6.4:243031-243050 | MS.gene74439:CDS | 30.0% | |
| TTATCAATGTGTCCTACAAA+TGG | - | chr6.4:241809-241828 | MS.gene74439:intron | 30.0% | |
| TTCATTGAACTTTGTCATGA+AGG | - | chr6.4:240952-240971 | MS.gene74439:intron | 30.0% | |
| TTCTTGATTCTTGGAGTTAT+TGG | + | chr6.4:239668-239687 | None:intergenic | 30.0% | |
| TTGAAGAACACTACACATAA+TGG | - | chr6.4:242448-242467 | MS.gene74439:intron | 30.0% | |
| TTGGATACATTCAACAAGAA+AGG | - | chr6.4:238360-238379 | MS.gene74439:CDS | 30.0% | |
| TTTAATAGGACCACTATTGT+GGG | - | chr6.4:239848-239867 | MS.gene74439:CDS | 30.0% | |
| TTTCTACTTTATTGCAGGAA+AGG | - | chr6.4:241686-241705 | MS.gene74439:intron | 30.0% | |
| ! | AACCTTGATGGTATAAATTG+TGG | - | chr6.4:238654-238673 | MS.gene74439:CDS | 30.0% |
| ! | GAGATGATAATGAAAAAGGT+TGG | + | chr6.4:239732-239751 | None:intergenic | 30.0% |
| ! | GTTTGACCACAATTTTGTAT+CGG | - | chr6.4:240414-240433 | MS.gene74439:intron | 30.0% |
| ! | GTTTGACCACAATTTTGTAT+CGG | + | chr6.4:240433-240414 | None:intergenic | 30.0% |
| ! | TTCTATTCCTCTTTAGAAGT+GGG | + | chr6.4:237805-237824 | None:intergenic | 30.0% |
| ! | TTGCTGTTGAGAATATTTCA+GGG | - | chr6.4:238318-238337 | MS.gene74439:CDS | 30.0% |
| ! | TTGTAGATAATTGGAAGCAT+AGG | - | chr6.4:240616-240635 | MS.gene74439:intron | 30.0% |
| ! | TTTCCTGATTTTCCATTTGT+AGG | + | chr6.4:241824-241843 | None:intergenic | 30.0% |
| ! | TTTGAAAGGCTTACCTTTTA+TGG | - | chr6.4:242312-242331 | MS.gene74439:intron | 30.0% |
| !! | AGTGGTTTTTGAAAGAGAAA+AGG | - | chr6.4:242563-242582 | MS.gene74439:CDS | 30.0% |
| !! | ATGATTTGTTCAAGCAAGAT+TGG | - | chr6.4:238192-238211 | MS.gene74439:CDS | 30.0% |
| !! | TAAAAGTGCTTAAGAAGAAG+TGG | - | chr6.4:242545-242564 | MS.gene74439:CDS | 30.0% |
| !! | TAATTCGGTGTAATCATATG+TGG | - | chr6.4:241320-241339 | MS.gene74439:intron | 30.0% |
| !! | TGGTGTTACTAAAGAAGAAA+TGG | - | chr6.4:242666-242685 | MS.gene74439:CDS | 30.0% |
| !!! | ACACCAACTACTTTTTATGA+AGG | - | chr6.4:239331-239350 | MS.gene74439:intron | 30.0% |
| !!! | ATTTTTGGTAGGAGTTTGTA+TGG | + | chr6.4:239051-239070 | None:intergenic | 30.0% |
| !!! | TGCTACAGTTTTGTTTGTTA+AGG | - | chr6.4:238839-238858 | MS.gene74439:CDS | 30.0% |
| AAAGTGAAAATCACACCTTG+AGG | - | chr6.4:239380-239399 | MS.gene74439:intron | 35.0% | |
| AAATATATTGGATCTGCCAG+AGG | + | chr6.4:239566-239585 | None:intergenic | 35.0% | |
| AACGGAGTTGTATTAGTAAG+AGG | + | chr6.4:242712-242731 | None:intergenic | 35.0% | |
| AATCATATGTGGAAGACATC+GGG | - | chr6.4:241331-241350 | MS.gene74439:intron | 35.0% | |
| AGGACCACATGTTTGTTTAA+AGG | + | chr6.4:240229-240248 | None:intergenic | 35.0% | |
| ATACTCTCTAACACGGTAAA+CGG | + | chr6.4:242730-242749 | None:intergenic | 35.0% | |
| ATCAACTTATAGACCGTGTT+AGG | + | chr6.4:240323-240342 | None:intergenic | 35.0% | |
| ATGATTCCAATGATAGCAAC+AGG | + | chr6.4:241063-241082 | None:intergenic | 35.0% | |
| ATGGTATAAATTGTGGATGC+AGG | - | chr6.4:238661-238680 | MS.gene74439:CDS | 35.0% | |
| ATTGTTCCTGTTGCTATCAT+TGG | - | chr6.4:241054-241073 | MS.gene74439:intron | 35.0% | |
| CACCTTCATAAAAAGTAGTG+TGG | + | chr6.4:239425-239444 | None:intergenic | 35.0% | |
| CATATGATCAAACGCATGTT+TGG | - | chr6.4:237923-237942 | MS.gene74439:intron | 35.0% | |
| CATCAATTGGTCAAGATACA+AGG | - | chr6.4:239893-239912 | MS.gene74439:CDS | 35.0% | |
| GAATGTATCCAACAACAGTA+AGG | + | chr6.4:238352-238371 | None:intergenic | 35.0% | |
| GATCATATAGTCTCAAGAGA+CGG | + | chr6.4:238501-238520 | None:intergenic | 35.0% | |
| GTTGATACTCCAAACATGTA+TGG | - | chr6.4:238816-238835 | MS.gene74439:CDS | 35.0% | |
| GTTGCTATCATTGGAATCAT+TGG | - | chr6.4:241063-241082 | MS.gene74439:intron | 35.0% | |
| TACTGACATACTCTCTAACA+CGG | + | chr6.4:242737-242756 | None:intergenic | 35.0% | |
| TATGTTTAATGAACTCACCC+CGG | + | chr6.4:242830-242849 | None:intergenic | 35.0% | |
| TCTAACTGCATCATCATTTG+TGG | + | chr6.4:241906-241925 | None:intergenic | 35.0% | |
| TGGATTGAAACTATCTCCAA+CGG | + | chr6.4:242269-242288 | None:intergenic | 35.0% | |
| TGTCCTACAAATGGAAAATC+AGG | - | chr6.4:241818-241837 | MS.gene74439:intron | 35.0% | |
| TGTTGTTGTGGTTGTTCTAA+GGG | - | chr6.4:240927-240946 | MS.gene74439:intron | 35.0% | |
| TTAAACAAACATGTGGTCCT+AGG | - | chr6.4:240229-240248 | MS.gene74439:CDS | 35.0% | |
| TTAATAGGACCACTATTGTG+GGG | - | chr6.4:239849-239868 | MS.gene74439:CDS | 35.0% | |
| TTGATACTGAGAGACTTAGA+AGG | + | chr6.4:241727-241746 | None:intergenic | 35.0% | |
| TTTAGAAGTGGGTCATTCAT+TGG | + | chr6.4:237794-237813 | None:intergenic | 35.0% | |
| TTTCTTGTTGGACTTCTTAC+TGG | - | chr6.4:238272-238291 | MS.gene74439:CDS | 35.0% | |
| ! | ACATAATGGTTTTCCTGTGA+TGG | - | chr6.4:242462-242481 | MS.gene74439:intron | 35.0% |
| ! | ATAGAAGACACCTTTTGTGA+AGG | - | chr6.4:239269-239288 | MS.gene74439:intron | 35.0% |
| ! | ATATTAATCGGTTCCGGTTA+TGG | - | chr6.4:242055-242074 | MS.gene74439:CDS | 35.0% |
| ! | CACATGGTGTACATTTTACT+AGG | + | chr6.4:241784-241803 | None:intergenic | 35.0% |
| ! | CCTATCATATTAATCGGTTC+CGG | - | chr6.4:242049-242068 | MS.gene74439:CDS | 35.0% |
| ! | GAAAATGGTTGATACTCATG+AGG | + | chr6.4:241950-241969 | None:intergenic | 35.0% |
| ! | GGTGTACATTTTACTAGGAA+GGG | + | chr6.4:241779-241798 | None:intergenic | 35.0% |
| ! | GTTCTATTCCTCTTTAGAAG+TGG | + | chr6.4:237806-237825 | None:intergenic | 35.0% |
| ! | TCTATCAGTTTTTCCTCACT+TGG | - | chr6.4:243090-243109 | MS.gene74439:CDS | 35.0% |
| ! | TGGTGTACATTTTACTAGGA+AGG | + | chr6.4:241780-241799 | None:intergenic | 35.0% |
| ! | TGTATGACTAAGAGCATGAT+TGG | - | chr6.4:241418-241437 | MS.gene74439:intron | 35.0% |
| ! | TTTTATCAAGTCACACCTCA+AGG | + | chr6.4:239398-239417 | None:intergenic | 35.0% |
| !! | AAATGTGGTCTTTTTGGTGA+AGG | - | chr6.4:240976-240995 | MS.gene74439:intron | 35.0% |
| !! | CTTGCTGTTGAGAATATTTC+AGG | - | chr6.4:238317-238336 | MS.gene74439:CDS | 35.0% |
| !! | GAAATTTAGTTGGGTTGAGT+TGG | - | chr6.4:242612-242631 | MS.gene74439:CDS | 35.0% |
| !! | GGTTTTTGAAAGAGAAAAGG+AGG | - | chr6.4:242566-242585 | MS.gene74439:CDS | 35.0% |
| !! | GTTAAGGTGAGTTTGTTACA+AGG | - | chr6.4:238855-238874 | MS.gene74439:CDS | 35.0% |
| !! | TCTGATATTTTAGATGCCTC+TGG | - | chr6.4:239547-239566 | MS.gene74439:intron | 35.0% |
| !!! | CACCACACTACTTTTTATGA+AGG | - | chr6.4:239420-239439 | MS.gene74439:intron | 35.0% |
| !!! | TCTTGTGTGCCCTTTTTTTT+AGG | + | chr6.4:238101-238120 | None:intergenic | 35.0% |
| AAAAGCCAGACCAAATCAGA+CGG | - | chr6.4:240276-240295 | MS.gene74439:intron | 40.0% | |
| AACATCGATAAGTTCTCCGA+CGG | + | chr6.4:242371-242390 | None:intergenic | 40.0% | |
| AAGGTTTCATTAGGATTCCG+AGG | + | chr6.4:242087-242106 | None:intergenic | 40.0% | |
| ACGGATAAGTTTCTCATCCA+CGG | + | chr6.4:242352-242371 | None:intergenic | 40.0% | |
| ACTGTAGCACCATACATGTT+TGG | + | chr6.4:238828-238847 | None:intergenic | 40.0% | |
| AGGTCATTGTAATGGCCATT+TGG | + | chr6.4:241866-241885 | None:intergenic | 40.0% | |
| CAGAATGAGTGTATGACCTA+AGG | - | chr6.4:239768-239787 | MS.gene74439:CDS | 40.0% | |
| CAGCTTCCTATGTGTACTAA+TGG | + | chr6.4:240679-240698 | None:intergenic | 40.0% | |
| CATCTGATATTGAGTCTACG+AGG | + | chr6.4:238546-238565 | None:intergenic | 40.0% | |
| CCGGAACCGATTAATATGAT+AGG | + | chr6.4:242052-242071 | None:intergenic | 40.0% | |
| CCTCACTTGGCAAATTCTAA+GGG | - | chr6.4:243103-243122 | MS.gene74439:CDS | 40.0% | |
| CGGTAGCAAAAGAAGATTGT+TGG | + | chr6.4:242215-242234 | None:intergenic | 40.0% | |
| CTCGTGTATCTCATATCGAT+CGG | - | chr6.4:238016-238035 | MS.gene74439:intron | 40.0% | |
| CTGATTTCAACCGTCTGATT+TGG | + | chr6.4:240289-240308 | None:intergenic | 40.0% | |
| CTGTAATTGGGATCTTGACA+AGG | - | chr6.4:243044-243063 | MS.gene74439:CDS | 40.0% | |
| CTGTTGTTGTGGTTGTTCTA+AGG | - | chr6.4:240926-240945 | MS.gene74439:intron | 40.0% | |
| CTTAGGTCATACACTCATTC+TGG | + | chr6.4:239770-239789 | None:intergenic | 40.0% | |
| CTTGTCAAGATCCCAATTAC+AGG | + | chr6.4:243046-243065 | None:intergenic | 40.0% | |
| CTTTGTCATGAAGGGAAATG+TGG | - | chr6.4:240961-240980 | MS.gene74439:intron | 40.0% | |
| GAAGGTCCATTAGTACACAT+AGG | - | chr6.4:240670-240689 | MS.gene74439:intron | 40.0% | |
| GACGAACCGATACAAAATTG+TGG | - | chr6.4:240500-240519 | MS.gene74439:intron | 40.0% | |
| GACGAACCGATACAAAATTG+TGG | + | chr6.4:240519-240500 | None:intergenic | 40.0% | |
| GAGTAGCTAGGTCATTGTAA+TGG | + | chr6.4:241874-241893 | None:intergenic | 40.0% | |
| GATTGGAGAAGTAGATCAAG+AGG | - | chr6.4:238209-238228 | MS.gene74439:CDS | 40.0% | |
| GCAGCCTTTAAACAAACATG+TGG | - | chr6.4:240222-240241 | MS.gene74439:CDS | 40.0% | |
| GCTATCATTGGAATCATTGG+TGG | - | chr6.4:241066-241085 | MS.gene74439:intron | 40.0% | |
| GGGAACATTGAAGATGTTGT+TGG | - | chr6.4:242646-242665 | MS.gene74439:CDS | 40.0% | |
| GGTCTAGACTTAGGAAAAGA+AGG | - | chr6.4:240652-240671 | MS.gene74439:intron | 40.0% | |
| TAAGTTTCTCATCCACGGTT+CGG | + | chr6.4:242347-242366 | None:intergenic | 40.0% | |
| TAGGATTTGATGTGTGGAAG+CGG | - | chr6.4:239701-239720 | MS.gene74439:intron | 40.0% | |
| TCAAATCCACTTGCTCTTGT+TGG | - | chr6.4:237833-237852 | MS.gene74439:intron | 40.0% | |
| TCCTCACTTGGCAAATTCTA+AGG | - | chr6.4:243102-243121 | MS.gene74439:CDS | 40.0% | |
| TCTTGACCAATTGATGTGCA+AGG | + | chr6.4:239889-239908 | None:intergenic | 40.0% | |
| TGGAAGTAGGATTTGATGTG+TGG | - | chr6.4:239695-239714 | MS.gene74439:intron | 40.0% | |
| TGGATGAGAAACTTATCCGT+CGG | - | chr6.4:242352-242371 | MS.gene74439:intron | 40.0% | |
| TTATCATCTCAAAGATGGGG+CGG | - | chr6.4:239742-239761 | MS.gene74439:CDS | 40.0% | |
| ! | CTTCAAGGCATCTACAATGT+TGG | + | chr6.4:242434-242453 | None:intergenic | 40.0% |
| ! | GAAGGGAAATGTGGTCTTTT+TGG | - | chr6.4:240970-240989 | MS.gene74439:intron | 40.0% |
| ! | GCTTTGATTTCAGGTATTCC+TGG | + | chr6.4:238783-238802 | None:intergenic | 40.0% |
| ! | GTTGTTGTGGTTGTTCTAAG+GGG | - | chr6.4:240928-240947 | MS.gene74439:intron | 40.0% |
| ! | TGAATGACCCACTTCTAAAG+AGG | - | chr6.4:237795-237814 | MS.gene74439:CDS | 40.0% |
| !! | CAGCTTATTTTCACGAGCTT+AGG | - | chr6.4:242985-243004 | MS.gene74439:intron | 40.0% |
| !! | CATGGTTTGTTAGCTGTTCT+TGG | - | chr6.4:242121-242140 | MS.gene74439:CDS | 40.0% |
| !! | CGTTCTCTTTTCTCTAGAAG+AGG | - | chr6.4:240852-240871 | MS.gene74439:intron | 40.0% |
| !! | TCGGTTCGTCTTGTTTAAAG+TGG | + | chr6.4:240452-240433 | None:intergenic | 40.0% |
| !!! | GTGTGCCCTTTTTTTTAGGA+AGG | + | chr6.4:238097-238116 | None:intergenic | 40.0% |
| !!! | TGGTCTGGCTTTTAAAACAC+CGG | + | chr6.4:240269-240288 | None:intergenic | 40.0% |
| AAGTTTCTCATCCACGGTTC+GGG | + | chr6.4:242346-242365 | None:intergenic | 45.0% | |
| AATTGGGATCTTGACAAGGC+AGG | - | chr6.4:243048-243067 | MS.gene74439:CDS | 45.0% | |
| ACAGACACTCCTCAGATTAG+AGG | + | chr6.4:241360-241379 | None:intergenic | 45.0% | |
| AGAAAAGGAGGACTGAGGAA+TGG | - | chr6.4:242578-242597 | MS.gene74439:CDS | 45.0% | |
| AGCTGCATTGCTTCCTTACT+AGG | - | chr6.4:240694-240713 | MS.gene74439:intron | 45.0% | |
| ATCGGGATACCTCTAATCTG+AGG | - | chr6.4:241348-241367 | MS.gene74439:intron | 45.0% | |
| ATGAAGCTCCGCACGTTATT+AGG | + | chr6.4:240795-240814 | None:intergenic | 45.0% | |
| ATGAGTGTATGACCTAAGGC+AGG | - | chr6.4:239772-239791 | MS.gene74439:CDS | 45.0% | |
| ATTGCTTCCTTACTAGGCCA+AGG | - | chr6.4:240700-240719 | MS.gene74439:intron | 45.0% | |
| CATATGTGTCTGTGCTACAG+AGG | + | chr6.4:237909-237928 | None:intergenic | 45.0% | |
| CATTTGACACTCCAACACGA+CGG | + | chr6.4:239141-239160 | None:intergenic | 45.0% | |
| CCCTTAGAATTTGCCAAGTG+AGG | + | chr6.4:243106-243125 | None:intergenic | 45.0% | |
| CGACTTGTCTGAAAAGGATC+CGG | + | chr6.4:242768-242787 | None:intergenic | 45.0% | |
| CTTCTCATAGCGAAAACCGT+TGG | - | chr6.4:242250-242269 | MS.gene74439:intron | 45.0% | |
| GAAAAGGAGGACTGAGGAAT+GGG | - | chr6.4:242579-242598 | MS.gene74439:CDS | 45.0% | |
| GAAAGAGAAAAGGAGGACTG+AGG | - | chr6.4:242573-242592 | MS.gene74439:CDS | 45.0% | |
| GACTGAGGAATGGGAAGTTA+GGG | - | chr6.4:242588-242607 | MS.gene74439:CDS | 45.0% | |
| GACTTGTCTGAAAAGGATCC+GGG | + | chr6.4:242767-242786 | None:intergenic | 45.0% | |
| GATGTCGATGTGTCAGTGTT+CGG | + | chr6.4:241276-241295 | None:intergenic | 45.0% | |
| GTATGTCAGTAGCAAAAGCC+CGG | - | chr6.4:242746-242765 | MS.gene74439:intron | 45.0% | |
| GTTTCAGCAGGTCTAGACTT+AGG | - | chr6.4:240643-240662 | MS.gene74439:intron | 45.0% | |
| GTTTCATTAGGATTCCGAGG+AGG | + | chr6.4:242084-242103 | None:intergenic | 45.0% | |
| TATCATCTCAAAGATGGGGC+GGG | - | chr6.4:239743-239762 | MS.gene74439:CDS | 45.0% | |
| TATGATTGTCTGGACCTCCT+TGG | + | chr6.4:240720-240739 | None:intergenic | 45.0% | |
| TCATCACCATCATCCATCAC+AGG | + | chr6.4:242478-242497 | None:intergenic | 45.0% | |
| TCGGGATCAGCATCCATAAA+AGG | + | chr6.4:242328-242347 | None:intergenic | 45.0% | |
| TGAGTGTATGACCTAAGGCA+GGG | - | chr6.4:239773-239792 | MS.gene74439:CDS | 45.0% | |
| TGGTGAGTAGAAGAGTAGCT+AGG | + | chr6.4:241886-241905 | None:intergenic | 45.0% | |
| TGTGGATGCAGGTACTTGAT+GGG | - | chr6.4:238672-238691 | MS.gene74439:CDS | 45.0% | |
| TTGTAGCACAGCTGTTGTTG+TGG | - | chr6.4:240915-240934 | MS.gene74439:intron | 45.0% | |
| TTGTGGATGCAGGTACTTGA+TGG | - | chr6.4:238671-238690 | MS.gene74439:CDS | 45.0% | |
| TTTGCTCCAACAAGAGCAAG+TGG | + | chr6.4:237842-237861 | None:intergenic | 45.0% | |
| ! | CGGATCCTTTTCAGACAAGT+CGG | - | chr6.4:242766-242785 | MS.gene74439:intron | 45.0% |
| ! | CTCTAGAAGAGGTTGCAAGT+TGG | - | chr6.4:240863-240882 | MS.gene74439:intron | 45.0% |
| ! | GAAGTCCGACTTGTCTGAAA+AGG | + | chr6.4:242774-242793 | None:intergenic | 45.0% |
| ! | TAGAAGAGGTTGCAAGTTGG+TGG | - | chr6.4:240866-240885 | MS.gene74439:intron | 45.0% |
| ! | TCATCGGTTGTTAGTTTCCG+CGG | - | chr6.4:242394-242413 | MS.gene74439:intron | 45.0% |
| ! | TTTGGCATTGCTGTTCCATC+AGG | - | chr6.4:242016-242035 | MS.gene74439:intron | 45.0% |
| !! | GGAATCATTGGTGGTGTCTT+GGG | - | chr6.4:241075-241094 | MS.gene74439:intron | 45.0% |
| !! | TGGAATCATTGGTGGTGTCT+TGG | - | chr6.4:241074-241093 | MS.gene74439:intron | 45.0% |
| !! | TGTGGTCTTTTTGGTGAAGG+TGG | - | chr6.4:240979-240998 | MS.gene74439:intron | 45.0% |
| !! | TTCAACCGTCTGATTTGGTC+TGG | + | chr6.4:240284-240303 | None:intergenic | 45.0% |
| !! | TTGAGTTGGCTGAGAGAGAA+GGG | - | chr6.4:242626-242645 | MS.gene74439:CDS | 45.0% |
| !!! | GGAGAAGTGCTCTTTTATGG+AGG | - | chr6.4:240887-240906 | MS.gene74439:intron | 45.0% |
| !!! | GGTGGAGAAGTGCTCTTTTA+TGG | - | chr6.4:240884-240903 | MS.gene74439:intron | 45.0% |
| !!! | GGTTTTCCTGTGATGGATGA+TGG | - | chr6.4:242469-242488 | MS.gene74439:intron | 45.0% |
| !! | CATTATAAAAATAAAATATA+TGG | + | chr6.4:238404-238423 | None:intergenic | 5.0% |
| !!! | TTTTAAAATAAATTAATGAA+GGG | - | chr6.4:238937-238956 | MS.gene74439:CDS | 5.0% |
| !!! | TTTTTAAAATAAATTAATGA+AGG | - | chr6.4:238936-238955 | MS.gene74439:CDS | 5.0% |
| ATAACGTGCGGAGCTTCATC+CGG | - | chr6.4:240796-240815 | MS.gene74439:intron | 50.0% | |
| ATGTGCAAGGCCAAGGTTTG+TGG | + | chr6.4:239876-239895 | None:intergenic | 50.0% | |
| CCAATTGATGTGCAAGGCCA+AGG | + | chr6.4:239883-239902 | None:intergenic | 50.0% | |
| CGAGACTGACACGTTAACGT+TGG | + | chr6.4:238000-238019 | None:intergenic | 50.0% | |
| CGCACGTTATTAGGTCACGA+CGG | + | chr6.4:240786-240805 | None:intergenic | 50.0% | |
| CGTCGTGACCTAATAACGTG+CGG | - | chr6.4:240784-240803 | MS.gene74439:intron | 50.0% | |
| CTAGGCTCTATGACTCTGTC+CGG | - | chr6.4:240247-240266 | MS.gene74439:intron | 50.0% | |
| GGACTGAGGAATGGGAAGTT+AGG | - | chr6.4:242587-242606 | MS.gene74439:CDS | 50.0% | |
| GTATGACCTAAGGCAGGGTA+AGG | - | chr6.4:239778-239797 | MS.gene74439:CDS | 50.0% | |
| GTTTAATGAACTCACCCCGG+AGG | + | chr6.4:242827-242846 | None:intergenic | 50.0% | |
| TCTCATTGACCCTGCCATCA+AGG | + | chr6.4:242155-242174 | None:intergenic | 50.0% | |
| TGTGAGTAGTACCGTCGTGT+TGG | - | chr6.4:239127-239146 | MS.gene74439:CDS | 50.0% | |
| TGTGCAAGGCCAAGGTTTGT+GGG | + | chr6.4:239875-239894 | None:intergenic | 50.0% | |
| ! | AGCATAGGAGCTGTTTCAGC+AGG | - | chr6.4:240631-240650 | MS.gene74439:intron | 50.0% |
| ! | CTTTTGCCTTACCCTGCCTT+AGG | + | chr6.4:239787-239806 | None:intergenic | 50.0% |
| ! | GTACCGAAGTATCAAGCCTC+CGG | - | chr6.4:242808-242827 | MS.gene74439:intron | 50.0% |
| ! | TACCGAAGTATCAAGCCTCC+GGG | - | chr6.4:242809-242828 | MS.gene74439:intron | 50.0% |
| ! | TCTTGGTGCAGCTTCCTTGA+TGG | - | chr6.4:242138-242157 | MS.gene74439:CDS | 50.0% |
| ! | TGTTTTGCTCCAACTGCTGC+TGG | - | chr6.4:238756-238775 | MS.gene74439:CDS | 50.0% |
| !! | CCTTGGCCTTGCACATCAAT+TGG | - | chr6.4:239880-239899 | MS.gene74439:CDS | 50.0% |
| !! | GTTGAGTTGGCTGAGAGAGA+AGG | - | chr6.4:242625-242644 | MS.gene74439:CDS | 50.0% |
| ACCCCGGAGGCTTGATACTT+CGG | + | chr6.4:242814-242833 | None:intergenic | 55.0% | |
| AGCTTCATCCGGTGTTTGCG+CGG | - | chr6.4:240807-240826 | MS.gene74439:intron | 55.0% | |
| ATTCCTGGTCCAGCAGCAGT+TGG | + | chr6.4:238768-238787 | None:intergenic | 55.0% | |
| ATTGTGGGGCCCACAAACCT+TGG | - | chr6.4:239863-239882 | MS.gene74439:CDS | 55.0% | |
| CGGACAGAGTCATAGAGCCT+AGG | + | chr6.4:240249-240268 | None:intergenic | 55.0% | |
| GAAAAGAGAACGCTGCCGAC+CGG | + | chr6.4:240844-240863 | None:intergenic | 55.0% | |
| GCTTCCTTACTAGGCCAAGG+AGG | - | chr6.4:240703-240722 | MS.gene74439:intron | 55.0% | |
| GTTTGTGGGCCCCACAATAG+TGG | + | chr6.4:239861-239880 | None:intergenic | 55.0% | |
| TAGTTTCCGCGGCGTGGAAA+AGG | - | chr6.4:242405-242424 | MS.gene74439:intron | 55.0% | |
| TGGACCTCCTTGGCCTAGTA+AGG | + | chr6.4:240710-240729 | None:intergenic | 55.0% | |
| ! | ACCGAAGTATCAAGCCTCCG+GGG | - | chr6.4:242810-242829 | MS.gene74439:intron | 55.0% |
| ! | GTGCAGCTTCCTTGATGGCA+GGG | - | chr6.4:242143-242162 | MS.gene74439:CDS | 55.0% |
| TCCGGTTATGGACGCCTCCT+CGG | - | chr6.4:242067-242086 | MS.gene74439:CDS | 60.0% | |
| TCGGAAAGCCGCGCAAACAC+CGG | + | chr6.4:240818-240837 | None:intergenic | 60.0% | |
| TGGATGCTGATCCCGAACCG+TGG | - | chr6.4:242332-242351 | MS.gene74439:intron | 60.0% | |
| ! | GGTGCAGCTTCCTTGATGGC+AGG | - | chr6.4:242142-242161 | MS.gene74439:CDS | 60.0% |
| ! | GGTTGTTAGTTTCCGCGGCG+TGG | - | chr6.4:242399-242418 | MS.gene74439:intron | 60.0% |
| ! | TGGCAACCTTTTCCACGCCG+CGG | + | chr6.4:242414-242433 | None:intergenic | 60.0% |
| !! | TCCGAGGAGGCGTCCATAAC+CGG | + | chr6.4:242071-242090 | None:intergenic | 60.0% |
| GCTCCAACTGCTGCTGGACC+AGG | - | chr6.4:238762-238781 | MS.gene74439:CDS | 65.0% | |
| TTGCGCGGCTTTCCGAGCAC+CGG | - | chr6.4:240822-240841 | MS.gene74439:intron | 65.0% | |
| GAACGCTGCCGACCGGTGCT+CGG | + | chr6.4:240837-240856 | None:intergenic | 70.0% | |
| !! | GCGGCTTTCCGAGCACCGGT+CGG | - | chr6.4:240826-240845 | MS.gene74439:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 237740 | 243144 | 237740 | ID=MS.gene74439 |
| chr6.4 | mRNA | 237740 | 243144 | 237740 | ID=MS.gene74439.t1;Parent=MS.gene74439 |
| chr6.4 | exon | 242993 | 243144 | 242993 | ID=MS.gene74439.t1.exon1;Parent=MS.gene74439.t1 |
| chr6.4 | CDS | 242993 | 243144 | 242993 | ID=cds.MS.gene74439.t1;Parent=MS.gene74439.t1 |
| chr6.4 | exon | 242503 | 242703 | 242503 | ID=MS.gene74439.t1.exon2;Parent=MS.gene74439.t1 |
| chr6.4 | CDS | 242503 | 242703 | 242503 | ID=cds.MS.gene74439.t1;Parent=MS.gene74439.t1 |
| chr6.4 | exon | 242024 | 242201 | 242024 | ID=MS.gene74439.t1.exon3;Parent=MS.gene74439.t1 |
| chr6.4 | CDS | 242024 | 242201 | 242024 | ID=cds.MS.gene74439.t1;Parent=MS.gene74439.t1 |
| chr6.4 | exon | 239730 | 240262 | 239730 | ID=MS.gene74439.t1.exon4;Parent=MS.gene74439.t1 |
| chr6.4 | CDS | 239730 | 240262 | 239730 | ID=cds.MS.gene74439.t1;Parent=MS.gene74439.t1 |
| chr6.4 | exon | 238053 | 239181 | 238053 | ID=MS.gene74439.t1.exon5;Parent=MS.gene74439.t1 |
| chr6.4 | CDS | 238053 | 239181 | 238053 | ID=cds.MS.gene74439.t1;Parent=MS.gene74439.t1 |
| chr6.4 | exon | 237740 | 237847 | 237740 | ID=MS.gene74439.t1.exon6;Parent=MS.gene74439.t1 |
| chr6.4 | CDS | 237740 | 237847 | 237740 | ID=cds.MS.gene74439.t1;Parent=MS.gene74439.t1 |
| Gene Sequence |
| Protein sequence |
