AlfalfaGEDB | MS.gene28935

M. sativa cultivar XinJiangDaYe / MS.gene28935

KEGG: -
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28935.t1	RHN61630.1	98.5	135	2	0	1	135	10	144	2.20E-71	278.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28935.t1	F4I1H5	47.8	134	67	2	1	133	10	141	1.4e-26	120.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28935.t1	A0A072ULN9	98.5	135	2	0	1	135	1	135	1.6e-71	278.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050767	MS.gene28935	0.806944	6.43E-50	-1.69E-46
MS.gene050770	MS.gene28935	0.808843	2.54E-50	-1.69E-46
MS.gene052290	MS.gene28935	0.821853	3.24E-53	-1.69E-46
MS.gene052293	MS.gene28935	0.938947	2.89E-99	-1.69E-46
MS.gene054376	MS.gene28935	0.806531	7.86E-50	-1.69E-46
MS.gene055254	MS.gene28935	0.816822	4.54E-52	-1.69E-46
MS.gene055397	MS.gene28935	0.813002	3.19E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene003386	MS.gene28935	PPI
MS.gene052293	MS.gene28935	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28935.t1	MTR_4g075760	98.519	135	2	0	1	135	1	135	4.98e-99	280
MS.gene28935.t1	MTR_4g072910	40.230	87	45	4	9	92	14	96	4.39e-11	56.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28935.t1	AT1G29450	50.833	120	57	1	1	118	10	129	3.35e-34	116
MS.gene28935.t1	AT1G29450	50.833	120	57	1	1	118	10	129	3.35e-34	116
MS.gene28935.t1	AT1G29430	50.000	116	55	2	5	119	15	128	6.88e-34	115
MS.gene28935.t1	AT1G29420	57.009	107	45	1	1	106	10	116	2.96e-33	114
MS.gene28935.t1	AT1G29420	57.009	107	45	1	1	106	50	156	1.25e-32	113
MS.gene28935.t1	AT1G29510	54.902	102	45	1	5	105	15	116	3.88e-32	111
MS.gene28935.t1	AT5G27780	55.140	107	46	1	1	105	11	117	3.98e-32	111
MS.gene28935.t1	AT1G29500	51.429	105	49	1	1	105	10	112	9.18e-32	110
MS.gene28935.t1	AT1G29460	42.553	141	71	2	1	133	10	148	9.47e-32	110
MS.gene28935.t1	AT1G29460	42.553	141	71	2	1	133	48	186	1.02e-31	111

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Find 26 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCTTCTCCACGTCTTC+GGG	0.423323	4.4:-34483238	None:intergenic
AAATGGTCCGAGGAAGTGTT+CGG	0.456406	4.4:+34483133	MS.gene28935:CDS
AACATAATAGGTCCATTCCC+TGG	0.597389	4.4:-34483160	None:intergenic
AACTCTTCATCAGTAAATAA+GGG	0.445037	4.4:+34483025	MS.gene28935:CDS
AAGATCATGACAGGGATTAA+AGG	0.342898	4.4:-34483296	None:intergenic
AATGAACAAATAATTATCTA+TGG	0.367557	4.4:+34483328	MS.gene28935:CDS
AGAACAGATTCCCGAAGACG+TGG	0.599588	4.4:+34483228	MS.gene28935:CDS
AGAACTCTTTAAATGGTCCG+AGG	0.631606	4.4:+34483123	MS.gene28935:CDS
AGGAAGTGTTCGGATTACCA+GGG	0.722902	4.4:+34483143	MS.gene28935:CDS
CAAAGCCTTCTCCACGTCTT+CGG	0.381612	4.4:-34483239	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAACTCTTCATCAGTAAATA+AGG	+	chr4.4:34483024-34483043	MS.gene28935:CDS	30.0%
AAGATCATGACAGGGATTAA+AGG	-	chr4.4:34483299-34483318	None:intergenic	35.0%
TCATATCCACTTCGTTTCTT+GGG	-	chr4.4:34483006-34483025	None:intergenic	35.0%
TCCAAGAAAACACTATCACA+CGG	-	chr4.4:34483187-34483206	None:intergenic	35.0%
TTAATCCCTGTCATGATCTT+AGG	+	chr4.4:34483299-34483318	MS.gene28935:CDS	35.0%
TTCATATCCACTTCGTTTCT+TGG	-	chr4.4:34483007-34483026	None:intergenic	35.0%
TTCGTGCTAAGATACTTTAG+AGG	-	chr4.4:34483094-34483113	None:intergenic	35.0%
AACATAATAGGTCCATTCCC+TGG	-	chr4.4:34483163-34483182	None:intergenic	40.0%
AGAACTCTTTAAATGGTCCG+AGG	+	chr4.4:34483123-34483142	MS.gene28935:CDS	40.0%
CTATCACACGGCAACATAAT+AGG	-	chr4.4:34483175-34483194	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	34482950	34483357	34482950	ID=MS.gene28935
chr4.4	mRNA	34482950	34483357	34482950	ID=MS.gene28935.t1;Parent=MS.gene28935
chr4.4	exon	34482950	34483357	34482950	ID=MS.gene28935.t1.exon1;Parent=MS.gene28935.t1
chr4.4	CDS	34482950	34483357	34482950	ID=cds.MS.gene28935.t1;Parent=MS.gene28935.t1

Gene Sequence

>MS.gene28935

ATGGCGAAAAAGTGGCAGAAAATGGCGGTCGAAAAGCGCAAGAGGATCTCATACCCAAGAAACGAAGTGGATATGAACTCTTCATCAGTAAATAAGGGTCACTTTGTTGTTTACAGCATTGATCGCAAGCGATTTGTGGTTCCTCTAAAGTATCTTAGCACGAACGTGTTTAGAGAACTCTTTAAATGGTCCGAGGAAGTGTTCGGATTACCAGGGAATGGACCTATTATGTTGCCGTGTGATAGTGTTTTCTTGGACTATGCAATCTCGTTAGTTCAAGAACAGATTCCCGAAGACGTGGAGAAGGCTTTGATCACTTTCATGTATGCTTGTCACAACGAGGCATCCTTTAATCCCTGTCATGATCTTAGGCAAAAAAATGAACAAATAATTATCTATGGCTTTTGA

Protein sequence

>MS.gene28935.t1

MAKKWQKMAVEKRKRISYPRNEVDMNSSSVNKGHFVVYSIDRKRFVVPLKYLSTNVFRELFKWSEEVFGLPGNGPIMLPCDSVFLDYAISLVQEQIPEDVEKALITFMYACHNEASFNPCHDLRQKNEQIIIYGF