Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28964.t1 | XP_003607270.1 | 97.4 | 190 | 5 | 0 | 1 | 190 | 1 | 190 | 3.70E-93 | 350.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28964.t1 | Q9Y3E5 | 55.3 | 132 | 55 | 2 | 62 | 189 | 47 | 178 | 1.9e-29 | 130.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28964.t1 | G7JPK0 | 97.4 | 190 | 5 | 0 | 1 | 190 | 1 | 190 | 2.7e-93 | 350.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene073078 | MS.gene28964 | PPI |
| MS.gene28964 | MS.gene91826 | PPI |
| MS.gene28964 | MS.gene78764 | PPI |
| MS.gene28964 | MS.gene053952 | PPI |
| MS.gene042719 | MS.gene28964 | PPI |
| MS.gene28964 | MS.gene35379 | PPI |
| MS.gene43071 | MS.gene28964 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28964.t1 | MTR_4g075280 | 97.368 | 190 | 5 | 0 | 1 | 190 | 1 | 190 | 1.04e-135 | 377 |
| MS.gene28964.t1 | MTR_3g109700 | 45.865 | 133 | 68 | 3 | 60 | 190 | 63 | 193 | 9.34e-34 | 119 |
| MS.gene28964.t1 | MTR_3g109700 | 44.444 | 108 | 57 | 2 | 57 | 163 | 60 | 165 | 9.22e-26 | 97.8 |
| MS.gene28964.t1 | MTR_3g109700 | 44.860 | 107 | 56 | 2 | 57 | 162 | 60 | 164 | 2.48e-25 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28964.t1 | AT5G16870 | 69.474 | 190 | 37 | 4 | 1 | 190 | 1 | 169 | 4.62e-86 | 251 |
| MS.gene28964.t1 | AT3G03010 | 69.318 | 176 | 41 | 2 | 17 | 190 | 15 | 179 | 7.16e-80 | 236 |
| MS.gene28964.t1 | AT3G03010 | 69.318 | 176 | 41 | 2 | 17 | 190 | 15 | 179 | 7.16e-80 | 236 |
| MS.gene28964.t1 | AT3G03010 | 69.318 | 176 | 41 | 2 | 17 | 190 | 15 | 179 | 7.16e-80 | 236 |
| MS.gene28964.t1 | AT3G03010 | 61.719 | 128 | 36 | 2 | 17 | 142 | 15 | 131 | 1.72e-45 | 147 |
| MS.gene28964.t1 | AT3G03010 | 61.719 | 128 | 36 | 2 | 17 | 142 | 15 | 131 | 1.72e-45 | 147 |
| MS.gene28964.t1 | AT4G32900 | 48.718 | 117 | 59 | 1 | 75 | 190 | 77 | 193 | 6.50e-34 | 119 |
| MS.gene28964.t1 | AT4G32900 | 45.556 | 90 | 49 | 0 | 75 | 164 | 77 | 166 | 1.98e-24 | 94.4 |
| MS.gene28964.t1 | AT4G32900 | 45.556 | 90 | 49 | 0 | 75 | 164 | 77 | 166 | 1.98e-24 | 94.4 |
| MS.gene28964.t1 | AT4G32900 | 46.875 | 64 | 34 | 0 | 75 | 138 | 77 | 140 | 4.41e-16 | 72.0 |
Find 30 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAGTTGGTCTTTGATTT+TGG | 0.042547 | 4.4:-34802181 | None:intergenic |
| TGTTAGAAATGATCTTAAAA+TGG | 0.178309 | 4.4:+34802337 | MS.gene28964:CDS |
| CTTGCTTTGGGTTACTTCAT+TGG | 0.226259 | 4.4:+34802051 | MS.gene28964:CDS |
| GTCATGGTTGAGTGCAATTT+TGG | 0.265900 | 4.4:+34802014 | MS.gene28964:CDS |
| TGGTGCTGGTTATCTTGCTT+TGG | 0.338108 | 4.4:+34802038 | MS.gene28964:CDS |
| GGTGCTGGTTATCTTGCTTT+GGG | 0.344764 | 4.4:+34802039 | MS.gene28964:CDS |
| AACATTGGGTCTCTACAAAA+AGG | 0.347125 | 4.4:+34802917 | MS.gene28964:CDS |
| CATTACCTATTTAAAGCCTT+TGG | 0.351201 | 4.4:-34802954 | None:intergenic |
| GAGAATTGCCATCACCGTTC+TGG | 0.354128 | 4.4:-34805089 | None:intergenic |
| GAGCTCCAAAGGCTTTAAAT+AGG | 0.364463 | 4.4:+34802949 | MS.gene28964:CDS |
| GTTAGAAATGATCTTAAAAT+GGG | 0.382687 | 4.4:+34802338 | MS.gene28964:CDS |
| ACCTCATCTACCACTTCAAC+AGG | 0.461920 | 4.4:-34805227 | None:intergenic |
| TATTTAAAGCCTTTGGAGCT+CGG | 0.471485 | 4.4:-34802947 | None:intergenic |
| AATGATCTTAAAATGGGTAA+AGG | 0.501457 | 4.4:+34802344 | MS.gene28964:CDS |
| AGAACGGTGATGGCAATTCT+CGG | 0.504068 | 4.4:+34805091 | MS.gene28964:CDS |
| GAAAGATTGCAGCTCAATGC+AGG | 0.516623 | 4.4:+34802366 | MS.gene28964:CDS |
| GGAGATGTCTGCACAGCCTA+AGG | 0.521064 | 4.4:+34803060 | MS.gene28964:CDS |
| TGAAAGTGAAGAAGATATGC+TGG | 0.522958 | 4.4:+34803096 | MS.gene28964:CDS |
| TCTAGATTCCAGAACGGTGA+TGG | 0.534748 | 4.4:+34805081 | MS.gene28964:intron |
| ACTCATATCACAATTGATGC+TGG | 0.549551 | 4.4:+34804500 | MS.gene28964:CDS |
| GGTTCTTTACCGAGCTCCAA+AGG | 0.550602 | 4.4:+34802938 | MS.gene28964:CDS |
| GCATCAATTGTGATATGAGT+AGG | 0.570579 | 4.4:-34804497 | None:intergenic |
| CAAGCTGTTCAACCTCAAGT+TGG | 0.585211 | 4.4:-34802194 | None:intergenic |
| ACCTGTTGAAGTGGTAGATG+AGG | 0.590585 | 4.4:+34805226 | MS.gene28964:CDS |
| GAAGTGGTAGATGAGGTAAC+TGG | 0.597036 | 4.4:+34805233 | MS.gene28964:CDS |
| ATGTGCAGGACCTGTTGAAG+TGG | 0.631821 | 4.4:+34805217 | MS.gene28964:intron |
| GTTTCTTCTAGATTCCAGAA+CGG | 0.652178 | 4.4:+34805075 | MS.gene28964:intron |
| TGATTGAAATGGAAATGTCA+TGG | 0.672695 | 4.4:+34801998 | None:intergenic |
| CAAAATCAAAGACCAACTTG+AGG | 0.704651 | 4.4:+34802182 | MS.gene28964:CDS |
| GTGGTAGATGAGGTAACTGG+TGG | 0.714457 | 4.4:+34805236 | MS.gene28964:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATCCTTTTAATTTATT+AGG | + | chr4.4:34803748-34803767 | MS.gene28964:intron | 10.0% |
| !! | ATCCAGAAAAAAAATATAAA+CGG | + | chr4.4:34802852-34802871 | MS.gene28964:intron | 15.0% |
| !! | ATTAATCAAATGATATCATT+AGG | + | chr4.4:34803779-34803798 | MS.gene28964:intron | 15.0% |
| !! | TTATTATTCTAATAACACTA+TGG | + | chr4.4:34804010-34804029 | MS.gene28964:intron | 15.0% |
| !! | TTGACAAGAAAAAATATAAA+TGG | - | chr4.4:34805141-34805160 | None:intergenic | 15.0% |
| !!! | AATTACTAGCTTTATTTTAA+TGG | + | chr4.4:34802276-34802295 | MS.gene28964:intron | 15.0% |
| !!! | AGGATATTTTTCTTTTAATT+TGG | - | chr4.4:34803737-34803756 | None:intergenic | 15.0% |
| !!! | ATTACTAGCTTTATTTTAAT+GGG | + | chr4.4:34802277-34802296 | MS.gene28964:intron | 15.0% |
| !!! | TAAGTATTGTTTGATTTTTA+GGG | + | chr4.4:34803128-34803147 | MS.gene28964:intron | 15.0% |
| !!! | TTTTTTTTAATGCTACTATA+AGG | - | chr4.4:34804641-34804660 | None:intergenic | 15.0% |
| !! | AACTTATTTGATATATTGAC+TGG | + | chr4.4:34804263-34804282 | MS.gene28964:intron | 20.0% |
| !! | AATCAATTAACAAGAAGATA+AGG | - | chr4.4:34804564-34804583 | None:intergenic | 20.0% |
| !! | ATCAATTAACAAGAAGATAA+GGG | - | chr4.4:34804563-34804582 | None:intergenic | 20.0% |
| !! | CTAAGCAATAATAATCTATT+TGG | - | chr4.4:34802708-34802727 | None:intergenic | 20.0% |
| !! | GTTAGAAATGATCTTAAAAT+GGG | + | chr4.4:34802338-34802357 | MS.gene28964:CDS | 20.0% |
| !! | TCAAATATGTCAATCTAATT+AGG | + | chr4.4:34802651-34802670 | MS.gene28964:intron | 20.0% |
| !! | TGTTAGAAATGATCTTAAAA+TGG | + | chr4.4:34802337-34802356 | MS.gene28964:CDS | 20.0% |
| !! | TGTTTAATCAATGAAAGTAA+AGG | + | chr4.4:34803423-34803442 | MS.gene28964:intron | 20.0% |
| !! | TTATATTCAAACTTGAAACT+TGG | + | chr4.4:34803512-34803531 | MS.gene28964:intron | 20.0% |
| !! | TTTCAGCCTAATAAATTAAA+AGG | - | chr4.4:34803757-34803776 | None:intergenic | 20.0% |
| !!! | AAAAAAGTATAGCATAAACA+AGG | + | chr4.4:34804162-34804181 | MS.gene28964:intron | 20.0% |
| !!! | AACGTCTTTTATTATTGTAA+AGG | + | chr4.4:34804064-34804083 | MS.gene28964:intron | 20.0% |
| !!! | GTAAGTATTGTTTGATTTTT+AGG | + | chr4.4:34803127-34803146 | MS.gene28964:intron | 20.0% |
| !!! | TATATTTTTTCTTGTCAACT+TGG | + | chr4.4:34805143-34805162 | MS.gene28964:intron | 20.0% |
| !!! | TTTACTTTCATTGATTAAAC+AGG | - | chr4.4:34803424-34803443 | None:intergenic | 20.0% |
| !!! | TTTATTTTCTATTTTTCTCC+TGG | - | chr4.4:34803325-34803344 | None:intergenic | 20.0% |
| ! | AAACTTCAATGTATAAGATG+AGG | - | chr4.4:34804813-34804832 | None:intergenic | 25.0% |
| ! | AATGATCTTAAAATGGGTAA+AGG | + | chr4.4:34802344-34802363 | MS.gene28964:CDS | 25.0% |
| ! | AATGTATAAGATGAGGATAA+TGG | - | chr4.4:34804806-34804825 | None:intergenic | 25.0% |
| ! | ACAACAAGTATCTACAAAAA+AGG | - | chr4.4:34802320-34802339 | None:intergenic | 25.0% |
| ! | ACACCAAATAAACACTATTA+TGG | + | chr4.4:34803252-34803271 | MS.gene28964:intron | 25.0% |
| ! | ATAAATGGTCATTCTATTAG+AGG | - | chr4.4:34805126-34805145 | None:intergenic | 25.0% |
| ! | ATATCATTAGGATTATGTCT+AGG | + | chr4.4:34803791-34803810 | MS.gene28964:intron | 25.0% |
| ! | ATGCAAATTGTCATGTATAT+TGG | + | chr4.4:34804681-34804700 | MS.gene28964:intron | 25.0% |
| ! | ATTTCAGATCTAATTGTACA+TGG | - | chr4.4:34804738-34804757 | None:intergenic | 25.0% |
| ! | CAACCATAATAGTGTTTATT+TGG | - | chr4.4:34803258-34803277 | None:intergenic | 25.0% |
| ! | CAACGAAAAAACAAAAGAAA+AGG | - | chr4.4:34804974-34804993 | None:intergenic | 25.0% |
| ! | CTTTAAATAGGTAATGTCAT+TGG | + | chr4.4:34802961-34802980 | MS.gene28964:intron | 25.0% |
| ! | GCAATAATAATCTATTTGGA+AGG | - | chr4.4:34802704-34802723 | None:intergenic | 25.0% |
| ! | GCTTAAATATCTCCAAAATT+AGG | + | chr4.4:34804344-34804363 | MS.gene28964:intron | 25.0% |
| ! | TTCTGGATTAAAAACAAAAC+AGG | - | chr4.4:34802840-34802859 | None:intergenic | 25.0% |
| ! | TTTGTATCTGTATGATATGA+AGG | + | chr4.4:34805005-34805024 | MS.gene28964:intron | 25.0% |
| !! | AACATGAAAGAACCTAATTT+TGG | - | chr4.4:34804359-34804378 | None:intergenic | 25.0% |
| !! | AATGAGTTGAAAACAGTTTA+TGG | + | chr4.4:34802559-34802578 | MS.gene28964:intron | 25.0% |
| !! | AGGCAAAAAATAGTAGATTT+TGG | + | chr4.4:34803366-34803385 | MS.gene28964:intron | 25.0% |
| !! | AGGGATGTATATTTCATTTT+AGG | - | chr4.4:34804783-34804802 | None:intergenic | 25.0% |
| !! | GGATGTATATTTCATTTTAG+GGG | - | chr4.4:34804781-34804800 | None:intergenic | 25.0% |
| !! | GGGATGTATATTTCATTTTA+GGG | - | chr4.4:34804782-34804801 | None:intergenic | 25.0% |
| !! | GGTTTAACAGTTAGATATTT+TGG | + | chr4.4:34804100-34804119 | MS.gene28964:intron | 25.0% |
| !! | TACAAAAGCTATCTTTAGAA+AGG | - | chr4.4:34804425-34804444 | None:intergenic | 25.0% |
| !!! | GACCGTTTATATTTTTTTTC+TGG | - | chr4.4:34802857-34802876 | None:intergenic | 25.0% |
| !!! | TATTCTCGAAGATTTTAAGA+TGG | + | chr4.4:34802221-34802240 | MS.gene28964:CDS | 25.0% |
| AAAATAGTCCAACCTATTAG+AGG | - | chr4.4:34804220-34804239 | None:intergenic | 30.0% | |
| AAATTGTCATGTATATTGGC+TGG | + | chr4.4:34804685-34804704 | MS.gene28964:intron | 30.0% | |
| AAGTAAAGGATGACTAGAAA+AGG | + | chr4.4:34803437-34803456 | MS.gene28964:intron | 30.0% | |
| ACTAACACTGCAATCATATT+AGG | + | chr4.4:34803554-34803573 | MS.gene28964:intron | 30.0% | |
| AGGTAAAAGTTCCAATTATG+TGG | - | chr4.4:34804602-34804621 | None:intergenic | 30.0% | |
| AGTAAAGGATGACTAGAAAA+GGG | + | chr4.4:34803438-34803457 | MS.gene28964:intron | 30.0% | |
| ATACGTAGCAGTGTATAATT+TGG | + | chr4.4:34803639-34803658 | MS.gene28964:intron | 30.0% | |
| ATACTTGTAGAAACTGTCTA+AGG | + | chr4.4:34803398-34803417 | MS.gene28964:intron | 30.0% | |
| CACAGTTATAGACAATACAA+AGG | - | chr4.4:34804899-34804918 | None:intergenic | 30.0% | |
| CTATATGCAATGAAAAGCAA+GGG | + | chr4.4:34803889-34803908 | MS.gene28964:intron | 30.0% | |
| CTGTTTCAAAAGAAATGTTG+TGG | + | chr4.4:34803585-34803604 | MS.gene28964:intron | 30.0% | |
| TACGTAGCAGTGTATAATTT+GGG | + | chr4.4:34803640-34803659 | MS.gene28964:intron | 30.0% | |
| TGTAATGTTCTCCACATAAT+TGG | + | chr4.4:34804588-34804607 | MS.gene28964:intron | 30.0% | |
| TTATTGTAAAGGAACTCTTG+TGG | + | chr4.4:34804075-34804094 | MS.gene28964:intron | 30.0% | |
| TTGTTTGGATAAGCACTTAA+TGG | + | chr4.4:34802419-34802438 | MS.gene28964:intron | 30.0% | |
| ! | AATTGTCATGTATATTGGCT+GGG | + | chr4.4:34804686-34804705 | MS.gene28964:intron | 30.0% |
| ! | ATCCTTTTGACATTTGAACT+AGG | + | chr4.4:34803346-34803365 | MS.gene28964:intron | 30.0% |
| ! | ATTTTGTAGTCATGCAACAT+TGG | + | chr4.4:34802902-34802921 | MS.gene28964:intron | 30.0% |
| ! | CATTACCTATTTAAAGCCTT+TGG | - | chr4.4:34802957-34802976 | None:intergenic | 30.0% |
| ! | CTCATTTTCATTACTTATCC+AGG | - | chr4.4:34802545-34802564 | None:intergenic | 30.0% |
| ! | GGTGTTAATTTGATCTTGTT+TGG | + | chr4.4:34802404-34802423 | MS.gene28964:intron | 30.0% |
| ! | TTTTGTAGTCATGCAACATT+GGG | + | chr4.4:34802903-34802922 | MS.gene28964:intron | 30.0% |
| !! | AACACTATTATGGTTGCTTT+TGG | + | chr4.4:34803262-34803281 | MS.gene28964:intron | 30.0% |
| !! | TATAAGATGAGGATAATGGA+GGG | - | chr4.4:34804802-34804821 | None:intergenic | 30.0% |
| !! | TCAATTTTGACAACAACCTT+AGG | - | chr4.4:34803079-34803098 | None:intergenic | 30.0% |
| !! | TTGGGCTTTAAACAATGATT+GGG | + | chr4.4:34803658-34803677 | MS.gene28964:intron | 30.0% |
| !! | TTTGGGCTTTAAACAATGAT+TGG | + | chr4.4:34803657-34803676 | MS.gene28964:intron | 30.0% |
| !!! | TAGATATTTTGGTAATCTGC+CGG | + | chr4.4:34804111-34804130 | MS.gene28964:intron | 30.0% |
| !!! | TCAAGTTGGTCTTTGATTTT+GGG | - | chr4.4:34802183-34802202 | None:intergenic | 30.0% |
| AACATTGGGTCTCTACAAAA+AGG | + | chr4.4:34802917-34802936 | MS.gene28964:CDS | 35.0% | |
| AAGGCAGTAAAATAACACAC+AGG | - | chr4.4:34804622-34804641 | None:intergenic | 35.0% | |
| ACATATTTGAGCTTACCTAC+AGG | - | chr4.4:34802641-34802660 | None:intergenic | 35.0% | |
| ACTCATATCACAATTGATGC+TGG | + | chr4.4:34804500-34804519 | MS.gene28964:CDS | 35.0% | |
| ATACTGTCAGAACCTCTAAT+AGG | + | chr4.4:34804205-34804224 | MS.gene28964:intron | 35.0% | |
| ATTTAAGCGAACTATGGAAG+AGG | - | chr4.4:34804332-34804351 | None:intergenic | 35.0% | |
| CAAAATCAAAGACCAACTTG+AGG | + | chr4.4:34802182-34802201 | MS.gene28964:CDS | 35.0% | |
| CAATGCAAGACATGAAACTT+AGG | + | chr4.4:34803475-34803494 | MS.gene28964:intron | 35.0% | |
| CTTTAAACAATGATTGGGCA+GGG | + | chr4.4:34803663-34803682 | MS.gene28964:intron | 35.0% | |
| GAACATAGTTAATGTTGCAC+AGG | - | chr4.4:34803158-34803177 | None:intergenic | 35.0% | |
| GCATCAATTGTGATATGAGT+AGG | - | chr4.4:34804500-34804519 | None:intergenic | 35.0% | |
| GCTATATGCAATGAAAAGCA+AGG | + | chr4.4:34803888-34803907 | MS.gene28964:intron | 35.0% | |
| GGAGATATTTAAGCGAACTA+TGG | - | chr4.4:34804338-34804357 | None:intergenic | 35.0% | |
| GTTTCTTCTAGATTCCAGAA+CGG | + | chr4.4:34805075-34805094 | MS.gene28964:intron | 35.0% | |
| TATTTGTTTGCGAGAGCTTA+TGG | - | chr4.4:34802603-34802622 | None:intergenic | 35.0% | |
| TGAAAGTGAAGAAGATATGC+TGG | + | chr4.4:34803096-34803115 | MS.gene28964:CDS | 35.0% | |
| TGCAGGTATGTAATCTTTGT+TGG | + | chr4.4:34802383-34802402 | MS.gene28964:intron | 35.0% | |
| TGCCTAGTTCAAATGTCAAA+AGG | - | chr4.4:34803351-34803370 | None:intergenic | 35.0% | |
| TGTTGTTCTATAAGCTATCC+TGG | + | chr4.4:34802524-34802543 | MS.gene28964:intron | 35.0% | |
| TTAACATGATGTTCATGTGC+AGG | + | chr4.4:34805203-34805222 | MS.gene28964:intron | 35.0% | |
| ! | ACAAGAACAGTTCGTCTTTT+AGG | - | chr4.4:34803948-34803967 | None:intergenic | 35.0% |
| ! | CAAGAACAGTTCGTCTTTTA+GGG | - | chr4.4:34803947-34803966 | None:intergenic | 35.0% |
| ! | GTATAAGATGAGGATAATGG+AGG | - | chr4.4:34804803-34804822 | None:intergenic | 35.0% |
| ! | TTTTCTTCAGAAAGCAAGCA+TGG | - | chr4.4:34804859-34804878 | None:intergenic | 35.0% |
| !! | ATACTGTCTTTTGCTGTGTT+AGG | + | chr4.4:34804451-34804470 | MS.gene28964:intron | 35.0% |
| !! | GTTTTTCAATGTCAATGTGC+AGG | + | chr4.4:34803035-34803054 | MS.gene28964:intron | 35.0% |
| !! | TATTTAAAGCCTTTGGAGCT+CGG | - | chr4.4:34802950-34802969 | None:intergenic | 35.0% |
| !! | TCTTTTGCTGTGTTAGGAAA+GGG | + | chr4.4:34804457-34804476 | MS.gene28964:intron | 35.0% |
| !! | TGGATAGGCATTTTTAAGCA+TGG | - | chr4.4:34804839-34804858 | None:intergenic | 35.0% |
| !!! | ACTATTATGGTTGCTTTTGG+TGG | + | chr4.4:34803265-34803284 | MS.gene28964:intron | 35.0% |
| !!! | AGATATTTTGGTAATCTGCC+GGG | + | chr4.4:34804112-34804131 | MS.gene28964:intron | 35.0% |
| !!! | CTATTATGGTTGCTTTTGGT+GGG | + | chr4.4:34803266-34803285 | MS.gene28964:intron | 35.0% |
| !!! | CTCAAGTTGGTCTTTGATTT+TGG | - | chr4.4:34802184-34802203 | None:intergenic | 35.0% |
| AATGAAAAGCAAGGGAGAGT+AGG | + | chr4.4:34803897-34803916 | MS.gene28964:intron | 40.0% | |
| CATTAGGATTATGTCTAGGC+TGG | + | chr4.4:34803795-34803814 | MS.gene28964:intron | 40.0% | |
| GATTGCACCAAGTGAGTATT+TGG | + | chr4.4:34804532-34804551 | MS.gene28964:intron | 40.0% | |
| GGTAGTTCCAAATACTCACT+TGG | - | chr4.4:34804542-34804561 | None:intergenic | 40.0% | |
| GTGGCTGATTAATCATTGTG+AGG | + | chr4.4:34803604-34803623 | MS.gene28964:intron | 40.0% | |
| TAGCCTAGTGATTTACATCC+CGG | - | chr4.4:34804133-34804152 | None:intergenic | 40.0% | |
| TGCTTAGATTGCGACATTCT+AGG | + | chr4.4:34802721-34802740 | MS.gene28964:intron | 40.0% | |
| TGTAAAGGAACTCTTGTGGA+AGG | + | chr4.4:34804079-34804098 | MS.gene28964:intron | 40.0% | |
| TGTCAGAACCTCTAATAGGT+TGG | + | chr4.4:34804209-34804228 | MS.gene28964:intron | 40.0% | |
| TTCAATGTCAATGTGCAGGT+GGG | + | chr4.4:34803039-34803058 | MS.gene28964:intron | 40.0% | |
| TTCAGAAAGCAAGCATGGAT+AGG | - | chr4.4:34804854-34804873 | None:intergenic | 40.0% | |
| TTTCAATGTCAATGTGCAGG+TGG | + | chr4.4:34803038-34803057 | MS.gene28964:intron | 40.0% | |
| ! | ATGTCATTGGTTGAGCTTGT+TGG | + | chr4.4:34802974-34802993 | MS.gene28964:intron | 40.0% |
| ! | CTTGCTTTGGGTTACTTCAT+TGG | + | chr4.4:34802051-34802070 | MS.gene28964:CDS | 40.0% |
| ! | GCTTTAAACAATGATTGGGC+AGG | + | chr4.4:34803662-34803681 | MS.gene28964:intron | 40.0% |
| ! | GTCATGGTTGAGTGCAATTT+TGG | + | chr4.4:34802014-34802033 | MS.gene28964:CDS | 40.0% |
| !! | CATACTTGCTTGCTGTACAT+TGG | + | chr4.4:34803207-34803226 | MS.gene28964:intron | 40.0% |
| !! | GAGCTCCAAAGGCTTTAAAT+AGG | + | chr4.4:34802949-34802968 | MS.gene28964:CDS | 40.0% |
| !! | GTCTTTTGCTGTGTTAGGAA+AGG | + | chr4.4:34804456-34804475 | MS.gene28964:intron | 40.0% |
| !! | TGGTTGAGTGCAATTTTGGT+TGG | + | chr4.4:34802018-34802037 | MS.gene28964:CDS | 40.0% |
| AAACAATGATTGGGCAGGGA+GGG | + | chr4.4:34803667-34803686 | MS.gene28964:intron | 45.0% | |
| ACCTCATCTACCACTTCAAC+AGG | - | chr4.4:34805230-34805249 | None:intergenic | 45.0% | |
| ACCTGTTGAAGTGGTAGATG+AGG | + | chr4.4:34805226-34805245 | MS.gene28964:CDS | 45.0% | |
| ACTAGAGAAGTTCAGCAACC+AGG | + | chr4.4:34803304-34803323 | MS.gene28964:intron | 45.0% | |
| CAAGCTGTTCAACCTCAAGT+TGG | - | chr4.4:34802197-34802216 | None:intergenic | 45.0% | |
| GAAAGATTGCAGCTCAATGC+AGG | + | chr4.4:34802366-34802385 | MS.gene28964:CDS | 45.0% | |
| GAAGTGGTAGATGAGGTAAC+TGG | + | chr4.4:34805233-34805252 | MS.gene28964:CDS | 45.0% | |
| TAAACAATGATTGGGCAGGG+AGG | + | chr4.4:34803666-34803685 | MS.gene28964:intron | 45.0% | |
| TCGTAAGTGCTTATGCCTGT+AGG | + | chr4.4:34802623-34802642 | MS.gene28964:intron | 45.0% | |
| TCTAGATTCCAGAACGGTGA+TGG | + | chr4.4:34805081-34805100 | MS.gene28964:intron | 45.0% | |
| TGCAGTGTTAGTGAGCATAG+AGG | - | chr4.4:34803546-34803565 | None:intergenic | 45.0% | |
| ! | AGAACGGTGATGGCAATTCT+CGG | + | chr4.4:34805091-34805110 | MS.gene28964:CDS | 45.0% |
| !! | GAACAGTTCGTCTTTTAGGG+TGG | - | chr4.4:34803944-34803963 | None:intergenic | 45.0% |
| !! | GGTGCTGGTTATCTTGCTTT+GGG | + | chr4.4:34802039-34802058 | MS.gene28964:CDS | 45.0% |
| !! | TGGTGCTGGTTATCTTGCTT+TGG | + | chr4.4:34802038-34802057 | MS.gene28964:CDS | 45.0% |
| !!! | AGTGCAATTTTGGTTGGTGC+TGG | + | chr4.4:34802024-34802043 | MS.gene28964:CDS | 45.0% |
| !!! | AAATAAAATTTAAGATAAAA+TGG | - | chr4.4:34804388-34804407 | None:intergenic | 5.0% |
| AACAATGATTGGGCAGGGAG+GGG | + | chr4.4:34803668-34803687 | MS.gene28964:intron | 50.0% | |
| AGATCCCTCATTCGCGTGAA+GGG | + | chr4.4:34802791-34802810 | MS.gene28964:intron | 50.0% | |
| ATGTGCAGGACCTGTTGAAG+TGG | + | chr4.4:34805217-34805236 | MS.gene28964:intron | 50.0% | |
| CTGCCGGGATGTAAATCACT+AGG | + | chr4.4:34804127-34804146 | MS.gene28964:intron | 50.0% | |
| GAGAATTGCCATCACCGTTC+TGG | - | chr4.4:34805092-34805111 | None:intergenic | 50.0% | |
| GGTTCTTTACCGAGCTCCAA+AGG | + | chr4.4:34802938-34802957 | MS.gene28964:CDS | 50.0% | |
| GTGGTAGATGAGGTAACTGG+TGG | + | chr4.4:34805236-34805255 | MS.gene28964:CDS | 50.0% | |
| TTCACCCTTCACGCGAATGA+GGG | - | chr4.4:34802798-34802817 | None:intergenic | 50.0% | |
| GAGATCCCTCATTCGCGTGA+AGG | + | chr4.4:34802790-34802809 | MS.gene28964:intron | 55.0% | |
| GGAGATGTCTGCACAGCCTA+AGG | + | chr4.4:34803060-34803079 | MS.gene28964:CDS | 55.0% | |
| GTTCACCCTTCACGCGAATG+AGG | - | chr4.4:34802799-34802818 | None:intergenic | 55.0% | |
| GATTGGGCAGGGAGGGGAAG+TGG | + | chr4.4:34803674-34803693 | MS.gene28964:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 34802006 | 34805274 | 34802006 | ID=MS.gene28964 |
| chr4.4 | mRNA | 34802006 | 34805274 | 34802006 | ID=MS.gene28964.t1;Parent=MS.gene28964 |
| chr4.4 | exon | 34802006 | 34802242 | 34802006 | ID=MS.gene28964.t1.exon1;Parent=MS.gene28964.t1 |
| chr4.4 | CDS | 34802006 | 34802242 | 34802006 | ID=cds.MS.gene28964.t1;Parent=MS.gene28964.t1 |
| chr4.4 | exon | 34802329 | 34802387 | 34802329 | ID=MS.gene28964.t1.exon2;Parent=MS.gene28964.t1 |
| chr4.4 | CDS | 34802329 | 34802387 | 34802329 | ID=cds.MS.gene28964.t1;Parent=MS.gene28964.t1 |
| chr4.4 | exon | 34802911 | 34802970 | 34802911 | ID=MS.gene28964.t1.exon3;Parent=MS.gene28964.t1 |
| chr4.4 | CDS | 34802911 | 34802970 | 34802911 | ID=cds.MS.gene28964.t1;Parent=MS.gene28964.t1 |
| chr4.4 | exon | 34803057 | 34803126 | 34803057 | ID=MS.gene28964.t1.exon4;Parent=MS.gene28964.t1 |
| chr4.4 | CDS | 34803057 | 34803126 | 34803057 | ID=cds.MS.gene28964.t1;Parent=MS.gene28964.t1 |
| chr4.4 | exon | 34804473 | 34804542 | 34804473 | ID=MS.gene28964.t1.exon5;Parent=MS.gene28964.t1 |
| chr4.4 | CDS | 34804473 | 34804542 | 34804473 | ID=cds.MS.gene28964.t1;Parent=MS.gene28964.t1 |
| chr4.4 | exon | 34805086 | 34805112 | 34805086 | ID=MS.gene28964.t1.exon6;Parent=MS.gene28964.t1 |
| chr4.4 | CDS | 34805086 | 34805112 | 34805086 | ID=cds.MS.gene28964.t1;Parent=MS.gene28964.t1 |
| chr4.4 | exon | 34805225 | 34805274 | 34805225 | ID=MS.gene28964.t1.exon7;Parent=MS.gene28964.t1 |
| chr4.4 | CDS | 34805225 | 34805274 | 34805225 | ID=cds.MS.gene28964.t1;Parent=MS.gene28964.t1 |
| Gene Sequence |
| Protein sequence |
