Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29030.t1 | XP_003601147.2 | 93.2 | 340 | 23 | 0 | 1 | 340 | 1 | 340 | 6.10E-163 | 583.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29030.t1 | F4I8K2 | 44.7 | 309 | 166 | 3 | 33 | 340 | 41 | 345 | 1.4e-67 | 258.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29030.t1 | G7J473 | 93.2 | 340 | 23 | 0 | 1 | 340 | 1 | 340 | 4.4e-163 | 583.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene89034 | MS.gene29030 | PPI |
| MS.gene039460 | MS.gene29030 | PPI |
| MS.gene92601 | MS.gene29030 | PPI |
| MS.gene29030 | MS.gene98262 | PPI |
| MS.gene86383 | MS.gene29030 | PPI |
| MS.gene36213 | MS.gene29030 | PPI |
| MS.gene34568 | MS.gene29030 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29030.t1 | MTR_3g073530 | 97.647 | 340 | 8 | 0 | 1 | 340 | 1 | 340 | 0.0 | 680 |
| MS.gene29030.t1 | MTR_4g021755 | 42.320 | 319 | 179 | 3 | 21 | 339 | 23 | 336 | 2.15e-84 | 261 |
| MS.gene29030.t1 | MTR_7g498280 | 44.932 | 296 | 153 | 2 | 42 | 334 | 37 | 325 | 2.39e-78 | 243 |
| MS.gene29030.t1 | MTR_2g097210 | 42.581 | 310 | 168 | 3 | 35 | 340 | 39 | 342 | 2.86e-78 | 244 |
| MS.gene29030.t1 | MTR_7g061780 | 43.974 | 307 | 163 | 4 | 18 | 323 | 5 | 303 | 7.06e-75 | 234 |
| MS.gene29030.t1 | MTR_1g101310 | 40.656 | 305 | 159 | 2 | 37 | 335 | 30 | 318 | 6.69e-69 | 218 |
| MS.gene29030.t1 | MTR_2g097210 | 44.403 | 268 | 142 | 2 | 35 | 301 | 39 | 300 | 2.54e-64 | 206 |
| MS.gene29030.t1 | MTR_2g103600 | 42.481 | 266 | 145 | 3 | 42 | 300 | 33 | 297 | 4.74e-63 | 203 |
| MS.gene29030.t1 | MTR_2g088290 | 27.737 | 274 | 138 | 7 | 64 | 337 | 5 | 218 | 9.85e-20 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29030.t1 | AT1G77860 | 54.693 | 309 | 135 | 3 | 33 | 340 | 41 | 345 | 1.91e-119 | 348 |
| MS.gene29030.t1 | AT1G77860 | 54.693 | 309 | 135 | 3 | 33 | 340 | 41 | 345 | 4.73e-119 | 349 |
| MS.gene29030.t1 | AT2G29050 | 44.295 | 298 | 161 | 3 | 43 | 340 | 57 | 349 | 1.46e-84 | 261 |
| MS.gene29030.t1 | AT1G63120 | 42.761 | 297 | 152 | 3 | 42 | 332 | 33 | 317 | 1.22e-78 | 243 |
| MS.gene29030.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 5.69e-76 | 236 |
| MS.gene29030.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 5.69e-76 | 236 |
| MS.gene29030.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 5.69e-76 | 236 |
| MS.gene29030.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 5.69e-76 | 236 |
| MS.gene29030.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 5.69e-76 | 236 |
| MS.gene29030.t1 | AT5G07250 | 39.938 | 323 | 175 | 5 | 20 | 334 | 34 | 345 | 2.79e-74 | 233 |
| MS.gene29030.t1 | AT3G53780 | 39.394 | 297 | 170 | 4 | 43 | 339 | 67 | 353 | 6.89e-67 | 216 |
| MS.gene29030.t1 | AT2G29050 | 40.418 | 287 | 135 | 5 | 43 | 301 | 57 | 335 | 1.70e-64 | 208 |
| MS.gene29030.t1 | AT1G52580 | 40.625 | 288 | 157 | 6 | 20 | 301 | 7 | 286 | 9.77e-59 | 192 |
| MS.gene29030.t1 | AT3G53780 | 46.341 | 205 | 109 | 1 | 59 | 263 | 83 | 286 | 7.98e-58 | 189 |
| MS.gene29030.t1 | AT4G23070 | 38.365 | 318 | 189 | 2 | 13 | 330 | 2 | 312 | 2.06e-55 | 183 |
| MS.gene29030.t1 | AT3G53780 | 36.975 | 238 | 141 | 3 | 102 | 339 | 1 | 229 | 1.58e-52 | 174 |
| MS.gene29030.t1 | AT1G12750 | 47.253 | 182 | 89 | 2 | 34 | 208 | 8 | 189 | 1.80e-51 | 169 |
| MS.gene29030.t1 | AT1G12750 | 47.253 | 182 | 89 | 2 | 34 | 208 | 8 | 189 | 2.07e-51 | 170 |
| MS.gene29030.t1 | AT5G07250 | 33.125 | 320 | 154 | 6 | 20 | 334 | 34 | 298 | 1.66e-47 | 162 |
| MS.gene29030.t1 | AT1G25290 | 33.333 | 150 | 96 | 3 | 108 | 256 | 159 | 305 | 1.36e-15 | 77.0 |
| MS.gene29030.t1 | AT1G25290 | 32.484 | 157 | 95 | 4 | 108 | 256 | 159 | 312 | 4.07e-14 | 72.8 |
Find 64 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTCTTGCAGTTCTTTA+TGG | 0.123493 | 3.4:-72131886 | MS.gene29030:CDS |
| GGTTCTTCTGGTGCTCTATT+TGG | 0.207313 | 3.4:-72132464 | MS.gene29030:CDS |
| ATCCCTGCTGTTGGTTCTTC+TGG | 0.258304 | 3.4:-72132476 | MS.gene29030:CDS |
| CATTGCTTTCAGAACTTGTT+TGG | 0.286947 | 3.4:-72132430 | MS.gene29030:CDS |
| AGCTAGACAGACCAGTTTCT+AGG | 0.291064 | 3.4:-72132080 | MS.gene29030:CDS |
| TTGTTGTAGGTTGGATGAAA+TGG | 0.322277 | 3.4:-72133133 | MS.gene29030:intron |
| ATTCGCCTAGAGCAGGAGTT+TGG | 0.324869 | 3.4:-72132988 | MS.gene29030:CDS |
| CACATGGGTGATTTCTGTTA+TGG | 0.348185 | 3.4:-72133574 | MS.gene29030:CDS |
| CTGGAAATATCATACCAAAA+AGG | 0.371080 | 3.4:-72132405 | MS.gene29030:intron |
| TTTGTGTGCAACTTCCTCAT+TGG | 0.377263 | 3.4:-72132270 | MS.gene29030:CDS |
| CTTTACTTGGAGCTACTTGT+TGG | 0.382692 | 3.4:+72132157 | None:intergenic |
| TCGGCGGCGGAGACGGCGGC+TGG | 0.392000 | 3.4:+72133602 | None:intergenic |
| TTTCAGAACTTGTTTGGAAC+TGG | 0.393026 | 3.4:-72132424 | MS.gene29030:CDS |
| TCAATTTGATCTCCTTTACT+TGG | 0.399081 | 3.4:+72132144 | None:intergenic |
| GGTGCTCTATTTGGATTACT+AGG | 0.406774 | 3.4:-72132455 | MS.gene29030:CDS |
| TTCGCCTAGAGCAGGAGTTT+GGG | 0.411077 | 3.4:-72132987 | MS.gene29030:CDS |
| AGAGAAACAATCCTAGAAAC+TGG | 0.416199 | 3.4:+72132069 | None:intergenic |
| TTCTATATATGCAGATTGGC+TGG | 0.416350 | 3.4:-72131910 | MS.gene29030:intron |
| AGTGCAATCACCGTGAGAAT+TGG | 0.418544 | 3.4:+72133497 | None:intergenic |
| CTTGCTGAAAATCCTCTGTT+AGG | 0.431045 | 3.4:-72133441 | MS.gene29030:CDS |
| TGACGGAACGTCATCAAACT+TGG | 0.448219 | 3.4:-72133089 | MS.gene29030:CDS |
| CTTCAAAACATCCCTGCTGT+TGG | 0.452199 | 3.4:-72132485 | MS.gene29030:CDS |
| AAAGGAATACAGTCAACATA+TGG | 0.463674 | 3.4:+72131832 | None:intergenic |
| CTCTGCAGTGTCATCTATGT+TGG | 0.465016 | 3.4:-72133012 | MS.gene29030:CDS |
| TGTCAACTCGGCGGCGGAGA+CGG | 0.480816 | 3.4:+72133595 | None:intergenic |
| TGTTGTAGGTTGGATGAAAT+GGG | 0.486882 | 3.4:-72133132 | MS.gene29030:intron |
| TTTATATCAGGATTCCTCCT+TGG | 0.489553 | 3.4:-72132207 | MS.gene29030:CDS |
| ACTGTATTCCTTTCACAAGC+TGG | 0.494213 | 3.4:-72131822 | MS.gene29030:CDS |
| TTAGCTGTATACCTCACAAA+AGG | 0.504592 | 3.4:+72131780 | None:intergenic |
| TCGAGTGGGAGCTTCTTCGC+TGG | 0.511254 | 3.4:+72133651 | None:intergenic |
| TGGCGATGAAGAACCCTAGT+TGG | 0.512974 | 3.4:+72133544 | None:intergenic |
| AACACTCACTTTGACATGGA+AGG | 0.515961 | 3.4:+72133417 | None:intergenic |
| CAACAAGTAGCTCCAAGTAA+AGG | 0.517154 | 3.4:-72132156 | MS.gene29030:CDS |
| AACGAGAACCTTCCAAGAGA+TGG | 0.532436 | 3.4:+72133471 | None:intergenic |
| GAGCTACTTGTTGGAACTGA+GGG | 0.533208 | 3.4:+72132166 | None:intergenic |
| TCCGCCGCCGAGTTGACACA+TGG | 0.533397 | 3.4:-72133590 | MS.gene29030:CDS |
| TGTTGGAATTCGCCTAGAGC+AGG | 0.535446 | 3.4:-72132995 | MS.gene29030:CDS |
| TTGCAGTGCCAGCTTGTGAA+AGG | 0.539450 | 3.4:+72131814 | None:intergenic |
| GCACCAGAAGAACCAACAGC+AGG | 0.542650 | 3.4:+72132473 | None:intergenic |
| GATTTGAGCTGCGGATCTTG+AGG | 0.543922 | 3.4:+72133624 | None:intergenic |
| GTTATGGTGTTAATCCAACT+AGG | 0.549878 | 3.4:-72133558 | MS.gene29030:CDS |
| CAACTCGGCGGCGGAGACGG+CGG | 0.566686 | 3.4:+72133598 | None:intergenic |
| ACGGCCCAAACTCCTGCTCT+AGG | 0.571688 | 3.4:+72132983 | None:intergenic |
| CCCATGTGTCAACTCGGCGG+CGG | 0.585405 | 3.4:+72133589 | None:intergenic |
| CGGCGGCTGGATTTGAGCTG+CGG | 0.587185 | 3.4:+72133615 | None:intergenic |
| TTATGGTGTTAATCCAACTA+GGG | 0.587660 | 3.4:-72133557 | MS.gene29030:CDS |
| AAATCACCCATGTGTCAACT+CGG | 0.596088 | 3.4:+72133583 | None:intergenic |
| TGCAGAGATTGATCGCAAGA+TGG | 0.597021 | 3.4:+72133028 | None:intergenic |
| AAACATACAGCAGAGTGAAG+AGG | 0.602409 | 3.4:+72132043 | None:intergenic |
| CACCAGAAGAACCAACAGCA+GGG | 0.607545 | 3.4:+72132474 | None:intergenic |
| TTTGAACACTCACTTTGACA+TGG | 0.608414 | 3.4:+72133413 | None:intergenic |
| GGAGCTACTTGTTGGAACTG+AGG | 0.624497 | 3.4:+72132165 | None:intergenic |
| GATTGCTTCACCAATTCTCA+CGG | 0.629587 | 3.4:-72133507 | MS.gene29030:CDS |
| CGAATAGAAGAACAGTTCCA+AGG | 0.630132 | 3.4:+72132190 | None:intergenic |
| GGATCTTGAGGAAGATCGAG+TGG | 0.634181 | 3.4:+72133636 | None:intergenic |
| ACATCAACAGTTATTGCACA+TGG | 0.663755 | 3.4:-72131858 | MS.gene29030:CDS |
| GATCTTGAGGAAGATCGAGT+GGG | 0.666629 | 3.4:+72133637 | None:intergenic |
| CATAAGGCAGAAAACCAATG+AGG | 0.670425 | 3.4:+72132256 | None:intergenic |
| GACATGGAAGGACCTAACAG+AGG | 0.687166 | 3.4:+72133429 | None:intergenic |
| AGCTACTTGTTGGAACTGAG+GGG | 0.687207 | 3.4:+72132167 | None:intergenic |
| CCGCCGCCGAGTTGACACAT+GGG | 0.690890 | 3.4:-72133589 | MS.gene29030:CDS |
| TCACCCATGTGTCAACTCGG+CGG | 0.730803 | 3.4:+72133586 | None:intergenic |
| ATAGAAGAACAGTTCCAAGG+AGG | 0.740367 | 3.4:+72132193 | None:intergenic |
| GCAATCGTTGACGAGCATCG+TGG | 0.744729 | 3.4:+72133524 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCTCAAAATATTAT+TGG | - | chr3.4:72132795-72132814 | MS.gene29030:intron | 10.0% |
| !!! | TTTTATTCTATTTAATTTGA+GGG | - | chr3.4:72133492-72133511 | MS.gene29030:CDS | 10.0% |
| !! | AATTAGAAAAGAAATTTACA+CGG | + | chr3.4:72132527-72132546 | None:intergenic | 15.0% |
| !!! | AATTTCTTTTCTAATTCATT+TGG | - | chr3.4:72132531-72132550 | MS.gene29030:CDS | 15.0% |
| !!! | GTTTTATTCTATTTAATTTG+AGG | - | chr3.4:72133491-72133510 | MS.gene29030:CDS | 15.0% |
| !!! | TTTATTCTATTTAATTTGAG+GGG | - | chr3.4:72133493-72133512 | MS.gene29030:CDS | 15.0% |
| !!! | TTTGTTTTTAATTTACAGTA+AGG | - | chr3.4:72132923-72132942 | MS.gene29030:intron | 15.0% |
| !!! | TTTTTGATCAATTTTTTCTT+TGG | - | chr3.4:72133155-72133174 | MS.gene29030:intron | 15.0% |
| !! | AGTGATTAATTAAAGTGAAA+TGG | - | chr3.4:72132203-72132222 | MS.gene29030:CDS | 20.0% |
| !!! | TGAAATTGAACTTCATTTTA+GGG | - | chr3.4:72132271-72132290 | MS.gene29030:CDS | 20.0% |
| !!! | TGAATTTGAGTTTCTAATTT+AGG | - | chr3.4:72132122-72132141 | MS.gene29030:CDS | 20.0% |
| !!! | TTCATTTTAGGGTTAATTTA+GGG | - | chr3.4:72132282-72132301 | MS.gene29030:CDS | 20.0% |
| !!! | TTTTAATTTACAGTAAGGAT+TGG | - | chr3.4:72132928-72132947 | MS.gene29030:intron | 20.0% |
| ! | CATCAAATCATTAAATGAGA+AGG | - | chr3.4:72133551-72133570 | MS.gene29030:CDS | 25.0% |
| ! | CTGTGTTTAATGTCTAATTT+AGG | - | chr3.4:72132174-72132193 | MS.gene29030:CDS | 25.0% |
| ! | CTTGAAAAATTGTCTACATA+AGG | + | chr3.4:72133251-72133270 | None:intergenic | 25.0% |
| ! | TTCTTTCTATATATGCAGAT+TGG | - | chr3.4:72133574-72133593 | MS.gene29030:CDS | 25.0% |
| ! | TTTGCATCATTTCAATCAAT+TGG | + | chr3.4:72132704-72132723 | None:intergenic | 25.0% |
| !! | GTGAAATTGAACTTCATTTT+AGG | - | chr3.4:72132270-72132289 | MS.gene29030:CDS | 25.0% |
| !!! | CTTCATTTTAGGGTTAATTT+AGG | - | chr3.4:72132281-72132300 | MS.gene29030:CDS | 25.0% |
| !!! | TATATACTATCTGCTTTTGT+GGG | - | chr3.4:72132958-72132977 | MS.gene29030:intron | 25.0% |
| !!! | TTGATCAATTTTTTCTTTGG+TGG | - | chr3.4:72133158-72133177 | MS.gene29030:intron | 25.0% |
| AAAGGAATACAGTCAACATA+TGG | + | chr3.4:72133659-72133678 | None:intergenic | 30.0% | |
| AAGAAAAAGAGAAGCCATTA+AGG | + | chr3.4:72132986-72133005 | None:intergenic | 30.0% | |
| CTGGAAATATCATACCAAAA+AGG | - | chr3.4:72133083-72133102 | MS.gene29030:CDS | 30.0% | |
| TCAATTTGATCTCCTTTACT+TGG | + | chr3.4:72133347-72133366 | None:intergenic | 30.0% | |
| TTTAATGATTTGATGCATGC+CGG | + | chr3.4:72133546-72133565 | None:intergenic | 30.0% | |
| ! | GGAATTTTATAATGCAACGA+TGG | - | chr3.4:72132312-72132331 | MS.gene29030:intron | 30.0% |
| ! | GGGTTAATTTAGGGTTTAAA+AGG | - | chr3.4:72132291-72132310 | MS.gene29030:CDS | 30.0% |
| ! | GTTTCTAATTTAGGTTTCAG+AGG | - | chr3.4:72132131-72132150 | MS.gene29030:CDS | 30.0% |
| ! | TCTACGAAAGAACTTTTTGA+CGG | - | chr3.4:72132382-72132401 | MS.gene29030:intron | 30.0% |
| ! | TGATTTTGTAATGTCAGTGT+TGG | - | chr3.4:72132627-72132646 | MS.gene29030:intron | 30.0% |
| ! | TTATGGTGTTAATCCAACTA+GGG | - | chr3.4:72131931-72131950 | MS.gene29030:intron | 30.0% |
| !! | CTATATACTATCTGCTTTTG+TGG | - | chr3.4:72132957-72132976 | MS.gene29030:intron | 30.0% |
| !! | CTGTACTTGGTGTTTAATTT+AGG | - | chr3.4:72132228-72132247 | MS.gene29030:CDS | 30.0% |
| !!! | GTAGACAATTTTTCAAGCAT+TGG | - | chr3.4:72133254-72133273 | MS.gene29030:intron | 30.0% |
| AACAATGAGAAACAGCTATG+AGG | + | chr3.4:72133123-72133142 | None:intergenic | 35.0% | |
| AAGTGAAATGGAACTGTACT+TGG | - | chr3.4:72132215-72132234 | MS.gene29030:CDS | 35.0% | |
| ACACCGGATACACATTTAAT+CGG | - | chr3.4:72132667-72132686 | MS.gene29030:intron | 35.0% | |
| ACATCAACAGTTATTGCACA+TGG | - | chr3.4:72133630-72133649 | MS.gene29030:CDS | 35.0% | |
| AGAGAAACAATCCTAGAAAC+TGG | + | chr3.4:72133422-72133441 | None:intergenic | 35.0% | |
| ATCTATAAAGCAGAGAACAG+TGG | + | chr3.4:72132846-72132865 | None:intergenic | 35.0% | |
| CAACCGATTAAATGTGTATC+CGG | + | chr3.4:72132673-72132692 | None:intergenic | 35.0% | |
| CTTCTATCTATTGTGCTTTC+CGG | - | chr3.4:72133524-72133543 | MS.gene29030:CDS | 35.0% | |
| TGTCTTCTTGCAGTTCTTTA+TGG | - | chr3.4:72133602-72133621 | MS.gene29030:CDS | 35.0% | |
| TTCTATATATGCAGATTGGC+TGG | - | chr3.4:72133578-72133597 | MS.gene29030:CDS | 35.0% | |
| TTGAATGTATCCACATGTGT+CGG | + | chr3.4:72132770-72132789 | None:intergenic | 35.0% | |
| TTTATATCAGGATTCCTCCT+TGG | - | chr3.4:72133281-72133300 | MS.gene29030:intron | 35.0% | |
| TTTGAACACTCACTTTGACA+TGG | + | chr3.4:72132078-72132097 | None:intergenic | 35.0% | |
| ! | CATTGCTTTCAGAACTTGTT+TGG | - | chr3.4:72133058-72133077 | MS.gene29030:CDS | 35.0% |
| ! | CGAAAAACTAAGCACCTTTT+TGG | + | chr3.4:72133100-72133119 | None:intergenic | 35.0% |
| ! | GTTATGGTGTTAATCCAACT+AGG | - | chr3.4:72131930-72131949 | MS.gene29030:intron | 35.0% |
| ! | TGTTGTAGGTTGGATGAAAT+GGG | - | chr3.4:72132356-72132375 | MS.gene29030:intron | 35.0% |
| ! | TTGTTGTAGGTTGGATGAAA+TGG | - | chr3.4:72132355-72132374 | MS.gene29030:intron | 35.0% |
| ! | TTTCAGAACTTGTTTGGAAC+TGG | - | chr3.4:72133064-72133083 | MS.gene29030:CDS | 35.0% |
| !!! | AGCATTGGTGGTTTTATATC+AGG | - | chr3.4:72133269-72133288 | MS.gene29030:intron | 35.0% |
| !!! | GACAATTTTTCAAGCATTGG+TGG | - | chr3.4:72133257-72133276 | MS.gene29030:intron | 35.0% |
| !!! | TTTTTTCTTTGGTGGAATGC+AGG | - | chr3.4:72133166-72133185 | MS.gene29030:intron | 35.0% |
| AAAAGTCCAGCGTGCAAAAA+TGG | + | chr3.4:72132440-72132459 | None:intergenic | 40.0% | |
| AAACATACAGCAGAGTGAAG+AGG | + | chr3.4:72133448-72133467 | None:intergenic | 40.0% | |
| AAATCACCCATGTGTCAACT+CGG | + | chr3.4:72131908-72131927 | None:intergenic | 40.0% | |
| AACACTCACTTTGACATGGA+AGG | + | chr3.4:72132074-72132093 | None:intergenic | 40.0% | |
| AATCACTTCCACTTCCACTT+CGG | + | chr3.4:72132612-72132631 | None:intergenic | 40.0% | |
| ACTGTATTCCTTTCACAAGC+TGG | - | chr3.4:72133666-72133685 | MS.gene29030:CDS | 40.0% | |
| ATAGAAGAACAGTTCCAAGG+AGG | + | chr3.4:72133298-72133317 | None:intergenic | 40.0% | |
| CAACAAGTAGCTCCAAGTAA+AGG | - | chr3.4:72133332-72133351 | MS.gene29030:intron | 40.0% | |
| CACATGGGTGATTTCTGTTA+TGG | - | chr3.4:72131914-72131933 | MS.gene29030:intron | 40.0% | |
| CATAAGGCAGAAAACCAATG+AGG | + | chr3.4:72133235-72133254 | None:intergenic | 40.0% | |
| CGAATAGAAGAACAGTTCCA+AGG | + | chr3.4:72133301-72133320 | None:intergenic | 40.0% | |
| CGGATACACATTTAATCGGT+TGG | - | chr3.4:72132671-72132690 | MS.gene29030:intron | 40.0% | |
| CTTGCTGAAAATCCTCTGTT+AGG | - | chr3.4:72132047-72132066 | MS.gene29030:intron | 40.0% | |
| CTTTACTTGGAGCTACTTGT+TGG | + | chr3.4:72133334-72133353 | None:intergenic | 40.0% | |
| GATTGCTTCACCAATTCTCA+CGG | - | chr3.4:72131981-72132000 | MS.gene29030:intron | 40.0% | |
| GGTGCTCTATTTGGATTACT+AGG | - | chr3.4:72133033-72133052 | MS.gene29030:CDS | 40.0% | |
| TTTGTGTGCAACTTCCTCAT+TGG | - | chr3.4:72133218-72133237 | MS.gene29030:intron | 40.0% | |
| ! | AACAGAGGATTTTCAGCAAG+AGG | + | chr3.4:72132047-72132066 | None:intergenic | 40.0% |
| ! | CTGTTGTTGTTGTTGTAGGT+TGG | - | chr3.4:72132346-72132365 | MS.gene29030:intron | 40.0% |
| ! | GATTGCACTTTTCCATCTCT+TGG | - | chr3.4:72132005-72132024 | MS.gene29030:intron | 40.0% |
| ! | GCACTGACATTGTGTATTGA+AGG | - | chr3.4:72132732-72132751 | MS.gene29030:intron | 40.0% |
| ! | GTTGCTGTTGTTGTTGTTGT+AGG | - | chr3.4:72132342-72132361 | MS.gene29030:intron | 40.0% |
| ! | TTGTGTATTGAAGGCGTGTT+TGG | - | chr3.4:72132741-72132760 | MS.gene29030:intron | 40.0% |
| !! | TGTTTCTATGTTTTCCGCAC+TGG | - | chr3.4:72132558-72132577 | MS.gene29030:intron | 40.0% |
| AACGAGAACCTTCCAAGAGA+TGG | + | chr3.4:72132020-72132039 | None:intergenic | 45.0% | |
| ACGACACATAGATACCGAAG+TGG | - | chr3.4:72132595-72132614 | MS.gene29030:intron | 45.0% | |
| AGCTAGACAGACCAGTTTCT+AGG | - | chr3.4:72133408-72133427 | MS.gene29030:intron | 45.0% | |
| AGTGCAATCACCGTGAGAAT+TGG | + | chr3.4:72131994-72132013 | None:intergenic | 45.0% | |
| CATAGATACCGAAGTGGAAG+TGG | - | chr3.4:72132601-72132620 | MS.gene29030:intron | 45.0% | |
| CTCTGCAGTGTCATCTATGT+TGG | - | chr3.4:72132476-72132495 | MS.gene29030:CDS | 45.0% | |
| CTTCAAAACATCCCTGCTGT+TGG | - | chr3.4:72133003-72133022 | MS.gene29030:CDS | 45.0% | |
| GATCTTGAGGAAGATCGAGT+GGG | + | chr3.4:72131854-72131873 | None:intergenic | 45.0% | |
| GGTTCTTCTGGTGCTCTATT+TGG | - | chr3.4:72133024-72133043 | MS.gene29030:CDS | 45.0% | |
| GTGAGACATGTGTTAGACAC+CGG | - | chr3.4:72132651-72132670 | MS.gene29030:intron | 45.0% | |
| TGACGGAACGTCATCAAACT+TGG | - | chr3.4:72132399-72132418 | MS.gene29030:intron | 45.0% | |
| TGCAGAGATTGATCGCAAGA+TGG | + | chr3.4:72132463-72132482 | None:intergenic | 45.0% | |
| ! | AGCTACTTGTTGGAACTGAG+GGG | + | chr3.4:72133324-72133343 | None:intergenic | 45.0% |
| ! | GAGCTACTTGTTGGAACTGA+GGG | + | chr3.4:72133325-72133344 | None:intergenic | 45.0% |
| ! | GCACTTTTCCATCTCTTGGA+AGG | - | chr3.4:72132009-72132028 | MS.gene29030:intron | 45.0% |
| ! | TGCTTTTGTGGGTGCCTTAA+TGG | - | chr3.4:72132969-72132988 | MS.gene29030:intron | 45.0% |
| !! | ACGTTTCCATTTTTGCACGC+TGG | - | chr3.4:72132431-72132450 | MS.gene29030:CDS | 45.0% |
| ATTCGCCTAGAGCAGGAGTT+TGG | - | chr3.4:72132500-72132519 | MS.gene29030:CDS | 50.0% | |
| CACCAGAAGAACCAACAGCA+GGG | + | chr3.4:72133017-72133036 | None:intergenic | 50.0% | |
| CGGTATCTATGTGTCGTGTC+CGG | + | chr3.4:72132592-72132611 | None:intergenic | 50.0% | |
| GACATGGAAGGACCTAACAG+AGG | + | chr3.4:72132062-72132081 | None:intergenic | 50.0% | |
| GATTTGAGCTGCGGATCTTG+AGG | + | chr3.4:72131867-72131886 | None:intergenic | 50.0% | |
| GGATCTTGAGGAAGATCGAG+TGG | + | chr3.4:72131855-72131874 | None:intergenic | 50.0% | |
| TGGCGATGAAGAACCCTAGT+TGG | + | chr3.4:72131947-72131966 | None:intergenic | 50.0% | |
| TGTTGGAATTCGCCTAGAGC+AGG | - | chr3.4:72132493-72132512 | MS.gene29030:CDS | 50.0% | |
| TTCGCCTAGAGCAGGAGTTT+GGG | - | chr3.4:72132501-72132520 | MS.gene29030:CDS | 50.0% | |
| TTGCAGTGCCAGCTTGTGAA+AGG | + | chr3.4:72133677-72133696 | None:intergenic | 50.0% | |
| ! | GGAGCTACTTGTTGGAACTG+AGG | + | chr3.4:72133326-72133345 | None:intergenic | 50.0% |
| !! | ATCCCTGCTGTTGGTTCTTC+TGG | - | chr3.4:72133012-72133031 | MS.gene29030:CDS | 50.0% |
| !! | TGTTTGGTGTCCGACACATG+TGG | - | chr3.4:72132757-72132776 | MS.gene29030:intron | 50.0% |
| GCACCAGAAGAACCAACAGC+AGG | + | chr3.4:72133018-72133037 | None:intergenic | 55.0% | |
| TCACCCATGTGTCAACTCGG+CGG | + | chr3.4:72131905-72131924 | None:intergenic | 55.0% | |
| ! | GCAATCGTTGACGAGCATCG+TGG | + | chr3.4:72131967-72131986 | None:intergenic | 55.0% |
| ! | TTCCGCACTGGCACAAACAC+CGG | - | chr3.4:72132570-72132589 | MS.gene29030:intron | 55.0% |
| ACGGCCCAAACTCCTGCTCT+AGG | + | chr3.4:72132508-72132527 | None:intergenic | 60.0% | |
| GTCCGGTGTTTGTGCCAGTG+CGG | + | chr3.4:72132575-72132594 | None:intergenic | 60.0% | |
| TCGAGTGGGAGCTTCTTCGC+TGG | + | chr3.4:72131840-72131859 | None:intergenic | 60.0% | |
| CCCATGTGTCAACTCGGCGG+CGG | + | chr3.4:72131902-72131921 | None:intergenic | 65.0% | |
| CGGCGGCTGGATTTGAGCTG+CGG | + | chr3.4:72131876-72131895 | None:intergenic | 65.0% | |
| TGTCAACTCGGCGGCGGAGA+CGG | + | chr3.4:72131896-72131915 | None:intergenic | 65.0% | |
| ! | CCGCCGCCGAGTTGACACAT+GGG | - | chr3.4:72131899-72131918 | MS.gene29030:CDS | 65.0% |
| ! | TCCGCCGCCGAGTTGACACA+TGG | - | chr3.4:72131898-72131917 | MS.gene29030:CDS | 65.0% |
| CAACTCGGCGGCGGAGACGG+CGG | + | chr3.4:72131893-72131912 | None:intergenic | 75.0% | |
| ! | TCGGCGGCGGAGACGGCGGC+TGG | + | chr3.4:72131889-72131908 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 72131792 | 72133718 | 72131792 | ID=MS.gene29030 |
| chr3.4 | mRNA | 72131792 | 72133718 | 72131792 | ID=MS.gene29030.t1;Parent=MS.gene29030 |
| chr3.4 | exon | 72133426 | 72133718 | 72133426 | ID=MS.gene29030.t1.exon1;Parent=MS.gene29030.t1 |
| chr3.4 | CDS | 72133426 | 72133718 | 72133426 | ID=cds.MS.gene29030.t1;Parent=MS.gene29030.t1 |
| chr3.4 | exon | 72132983 | 72133146 | 72132983 | ID=MS.gene29030.t1.exon2;Parent=MS.gene29030.t1 |
| chr3.4 | CDS | 72132983 | 72133146 | 72132983 | ID=cds.MS.gene29030.t1;Parent=MS.gene29030.t1 |
| chr3.4 | exon | 72132406 | 72132569 | 72132406 | ID=MS.gene29030.t1.exon3;Parent=MS.gene29030.t1 |
| chr3.4 | CDS | 72132406 | 72132569 | 72132406 | ID=cds.MS.gene29030.t1;Parent=MS.gene29030.t1 |
| chr3.4 | exon | 72132051 | 72132322 | 72132051 | ID=MS.gene29030.t1.exon4;Parent=MS.gene29030.t1 |
| chr3.4 | CDS | 72132051 | 72132322 | 72132051 | ID=cds.MS.gene29030.t1;Parent=MS.gene29030.t1 |
| chr3.4 | exon | 72131792 | 72131918 | 72131792 | ID=MS.gene29030.t1.exon5;Parent=MS.gene29030.t1 |
| chr3.4 | CDS | 72131792 | 72131918 | 72131792 | ID=cds.MS.gene29030.t1;Parent=MS.gene29030.t1 |
| Gene Sequence |
| Protein sequence |
