Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29113.t1 | XP_003601147.2 | 93.9 | 379 | 23 | 0 | 1 | 379 | 1 | 379 | 1.40E-187 | 665.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29113.t1 | F4I8K2 | 44.4 | 313 | 169 | 3 | 33 | 344 | 41 | 349 | 1.6e-67 | 258.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29113.t1 | G7J473 | 93.9 | 379 | 23 | 0 | 1 | 379 | 1 | 379 | 9.8e-188 | 665.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36213 | MS.gene29113 | PPI |
| MS.gene34568 | MS.gene29113 | PPI |
| MS.gene98262 | MS.gene29113 | PPI |
| MS.gene89034 | MS.gene29113 | PPI |
| MS.gene039460 | MS.gene29113 | PPI |
| MS.gene92601 | MS.gene29113 | PPI |
| MS.gene86383 | MS.gene29113 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29113.t1 | MTR_3g073530 | 97.889 | 379 | 8 | 0 | 1 | 379 | 1 | 379 | 0.0 | 763 |
| MS.gene29113.t1 | MTR_2g097210 | 40.974 | 349 | 196 | 3 | 35 | 379 | 39 | 381 | 2.05e-86 | 267 |
| MS.gene29113.t1 | MTR_4g021755 | 41.796 | 323 | 183 | 3 | 21 | 343 | 23 | 340 | 5.84e-84 | 261 |
| MS.gene29113.t1 | MTR_7g498280 | 43.548 | 310 | 165 | 2 | 28 | 334 | 23 | 325 | 7.00e-78 | 243 |
| MS.gene29113.t1 | MTR_7g061780 | 43.974 | 307 | 163 | 4 | 18 | 323 | 5 | 303 | 2.10e-74 | 234 |
| MS.gene29113.t1 | MTR_1g101310 | 40.789 | 304 | 158 | 2 | 37 | 334 | 30 | 317 | 2.82e-68 | 218 |
| MS.gene29113.t1 | MTR_2g097210 | 44.403 | 268 | 142 | 2 | 35 | 301 | 39 | 300 | 7.91e-64 | 206 |
| MS.gene29113.t1 | MTR_2g103600 | 42.481 | 266 | 145 | 3 | 42 | 300 | 33 | 297 | 2.23e-62 | 202 |
| MS.gene29113.t1 | MTR_2g088290 | 27.737 | 274 | 138 | 7 | 64 | 337 | 5 | 218 | 1.59e-19 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29113.t1 | AT1G77860 | 55.172 | 348 | 151 | 3 | 33 | 379 | 41 | 384 | 1.69e-139 | 402 |
| MS.gene29113.t1 | AT1G77860 | 54.140 | 314 | 139 | 3 | 33 | 345 | 41 | 350 | 3.40e-119 | 349 |
| MS.gene29113.t1 | AT2G29050 | 42.136 | 337 | 190 | 3 | 43 | 379 | 57 | 388 | 1.47e-92 | 283 |
| MS.gene29113.t1 | AT1G63120 | 42.761 | 297 | 152 | 3 | 42 | 332 | 33 | 317 | 5.51e-78 | 243 |
| MS.gene29113.t1 | AT3G53780 | 39.466 | 337 | 194 | 4 | 43 | 379 | 67 | 393 | 1.83e-76 | 241 |
| MS.gene29113.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 1.83e-75 | 236 |
| MS.gene29113.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 1.83e-75 | 236 |
| MS.gene29113.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 1.83e-75 | 236 |
| MS.gene29113.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 1.83e-75 | 236 |
| MS.gene29113.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 1.83e-75 | 236 |
| MS.gene29113.t1 | AT5G07250 | 39.938 | 323 | 175 | 5 | 20 | 334 | 34 | 345 | 1.16e-73 | 233 |
| MS.gene29113.t1 | AT2G29050 | 40.418 | 287 | 135 | 5 | 43 | 301 | 57 | 335 | 7.65e-64 | 207 |
| MS.gene29113.t1 | AT3G53780 | 37.410 | 278 | 165 | 3 | 102 | 379 | 1 | 269 | 6.86e-62 | 200 |
| MS.gene29113.t1 | AT1G52580 | 40.625 | 288 | 157 | 6 | 20 | 301 | 7 | 286 | 4.58e-58 | 191 |
| MS.gene29113.t1 | AT3G53780 | 46.341 | 205 | 109 | 1 | 59 | 263 | 83 | 286 | 4.95e-57 | 189 |
| MS.gene29113.t1 | AT4G23070 | 38.365 | 318 | 189 | 2 | 13 | 330 | 2 | 312 | 7.50e-55 | 183 |
| MS.gene29113.t1 | AT1G12750 | 46.995 | 183 | 90 | 2 | 33 | 208 | 7 | 189 | 5.46e-51 | 169 |
| MS.gene29113.t1 | AT1G12750 | 46.995 | 183 | 90 | 2 | 33 | 208 | 7 | 189 | 5.97e-51 | 170 |
| MS.gene29113.t1 | AT5G07250 | 33.438 | 320 | 153 | 6 | 20 | 334 | 34 | 298 | 3.03e-47 | 163 |
| MS.gene29113.t1 | AT1G25290 | 33.333 | 150 | 96 | 3 | 108 | 256 | 159 | 305 | 2.17e-15 | 77.0 |
| MS.gene29113.t1 | AT1G25290 | 31.410 | 156 | 98 | 3 | 108 | 256 | 159 | 312 | 5.59e-14 | 72.8 |
Find 71 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTCTTGCAGTTCTTTA+TGG | 0.123493 | 3.4:-72186495 | MS.gene29113:CDS |
| GGTTCTTCTGGTGCTCTATT+TGG | 0.207313 | 3.4:-72187073 | MS.gene29113:CDS |
| ATCCCTGCTGTTGGTTCTTC+TGG | 0.258304 | 3.4:-72187085 | MS.gene29113:CDS |
| CATTGCTTTCAGAACTTGTT+TGG | 0.286947 | 3.4:-72187039 | MS.gene29113:CDS |
| AGCTAGACAGACCAGTTTCT+AGG | 0.291064 | 3.4:-72186689 | MS.gene29113:CDS |
| TTGTTGTAGGTTGGATGAAA+TGG | 0.322277 | 3.4:-72187742 | MS.gene29113:intron |
| ATTCGCCTAGAGCAGGAGTT+TGG | 0.324869 | 3.4:-72187597 | MS.gene29113:CDS |
| CACTTGACGATGACATGTTT+GGG | 0.326016 | 3.4:-72185628 | MS.gene29113:CDS |
| CACATGGGTGATTTCTGTTA+TGG | 0.348185 | 3.4:-72188183 | MS.gene29113:CDS |
| CTGGAAATATCATACCAAAA+AGG | 0.371080 | 3.4:-72187014 | MS.gene29113:intron |
| TTTGTGTGCAACTTCCTCAT+TGG | 0.377263 | 3.4:-72186879 | MS.gene29113:CDS |
| CTTTACTTGGAGCTACTTGT+TGG | 0.382692 | 3.4:+72186766 | None:intergenic |
| TCGGCGGCGGAGACGGCGGC+TGG | 0.392000 | 3.4:+72188211 | None:intergenic |
| TTTCAGAACTTGTTTGGAAC+TGG | 0.393026 | 3.4:-72187033 | MS.gene29113:CDS |
| TCACTTGACGATGACATGTT+TGG | 0.398308 | 3.4:-72185629 | MS.gene29113:CDS |
| TCAATTTGATCTCCTTTACT+TGG | 0.399081 | 3.4:+72186753 | None:intergenic |
| GGTGCTCTATTTGGATTACT+AGG | 0.406774 | 3.4:-72187064 | MS.gene29113:CDS |
| TTCGCCTAGAGCAGGAGTTT+GGG | 0.411077 | 3.4:-72187596 | MS.gene29113:CDS |
| AGAGAAACAATCCTAGAAAC+TGG | 0.416199 | 3.4:+72186678 | None:intergenic |
| TTCTATATATGCAGATTGGC+TGG | 0.416350 | 3.4:-72186519 | MS.gene29113:intron |
| AGTGCAATCACCGTGAGAAT+TGG | 0.418544 | 3.4:+72188106 | None:intergenic |
| CTTGCTGAAAATCCTCTGTT+AGG | 0.431045 | 3.4:-72188050 | MS.gene29113:CDS |
| TGACGGAACGTCATCAAACT+TGG | 0.448219 | 3.4:-72187698 | MS.gene29113:CDS |
| CTTCAAAACATCCCTGCTGT+TGG | 0.452199 | 3.4:-72187094 | MS.gene29113:CDS |
| TTTGGGGAATGGCAACTTCA+AGG | 0.458362 | 3.4:-72185611 | MS.gene29113:CDS |
| AAAGGAATACAGTCAACATA+TGG | 0.463674 | 3.4:+72186441 | None:intergenic |
| CTCTGCAGTGTCATCTATGT+TGG | 0.465016 | 3.4:-72187621 | MS.gene29113:CDS |
| TGTCAACTCGGCGGCGGAGA+CGG | 0.480816 | 3.4:+72188204 | None:intergenic |
| TGTTGTAGGTTGGATGAAAT+GGG | 0.486882 | 3.4:-72187741 | MS.gene29113:intron |
| TTTATATCAGGATTCCTCCT+TGG | 0.489553 | 3.4:-72186816 | MS.gene29113:CDS |
| ACTGTATTCCTTTCACAAGC+TGG | 0.494213 | 3.4:-72186431 | MS.gene29113:CDS |
| TTAGCTGTATACCTCACAAA+AGG | 0.504592 | 3.4:+72186389 | None:intergenic |
| TCGAGTGGGAGCTTCTTCGC+TGG | 0.511254 | 3.4:+72188260 | None:intergenic |
| TGGCGATGAAGAACCCTAGT+TGG | 0.512974 | 3.4:+72188153 | None:intergenic |
| AACACTCACTTTGACATGGA+AGG | 0.515961 | 3.4:+72188026 | None:intergenic |
| CAACAAGTAGCTCCAAGTAA+AGG | 0.517154 | 3.4:-72186765 | MS.gene29113:CDS |
| AACGAGAACCTTCCAAGAGA+TGG | 0.532436 | 3.4:+72188080 | None:intergenic |
| GAGCTACTTGTTGGAACTGA+GGG | 0.533208 | 3.4:+72186775 | None:intergenic |
| TCCGCCGCCGAGTTGACACA+TGG | 0.533397 | 3.4:-72188199 | MS.gene29113:CDS |
| TGTTGGAATTCGCCTAGAGC+AGG | 0.535446 | 3.4:-72187604 | MS.gene29113:CDS |
| TTGCAGTGCCAGCTTGTGAA+AGG | 0.539450 | 3.4:+72186423 | None:intergenic |
| GCACCAGAAGAACCAACAGC+AGG | 0.542650 | 3.4:+72187082 | None:intergenic |
| GATTTGAGCTGCGGATCTTG+AGG | 0.543922 | 3.4:+72188233 | None:intergenic |
| GTTATGGTGTTAATCCAACT+AGG | 0.549878 | 3.4:-72188167 | MS.gene29113:CDS |
| AATCCTTGCTCGAGAGATGT+TGG | 0.561141 | 3.4:+72185576 | None:intergenic |
| CAACTCGGCGGCGGAGACGG+CGG | 0.566686 | 3.4:+72188207 | None:intergenic |
| ACGGCCCAAACTCCTGCTCT+AGG | 0.571688 | 3.4:+72187592 | None:intergenic |
| CCCATGTGTCAACTCGGCGG+CGG | 0.585405 | 3.4:+72188198 | None:intergenic |
| CGGCGGCTGGATTTGAGCTG+CGG | 0.587185 | 3.4:+72188224 | None:intergenic |
| TTATGGTGTTAATCCAACTA+GGG | 0.587660 | 3.4:-72188166 | MS.gene29113:CDS |
| ACGATGACATGTTTGGGGAA+TGG | 0.594814 | 3.4:-72185622 | MS.gene29113:CDS |
| AAATCACCCATGTGTCAACT+CGG | 0.596088 | 3.4:+72188192 | None:intergenic |
| TGCAGAGATTGATCGCAAGA+TGG | 0.597021 | 3.4:+72187637 | None:intergenic |
| AAACATACAGCAGAGTGAAG+AGG | 0.602409 | 3.4:+72186652 | None:intergenic |
| CACCAGAAGAACCAACAGCA+GGG | 0.607545 | 3.4:+72187083 | None:intergenic |
| TTTGAACACTCACTTTGACA+TGG | 0.608414 | 3.4:+72188022 | None:intergenic |
| ACTTGACGATGACATGTTTG+GGG | 0.614976 | 3.4:-72185627 | MS.gene29113:CDS |
| GGAGCTACTTGTTGGAACTG+AGG | 0.624497 | 3.4:+72186774 | None:intergenic |
| GATTGCTTCACCAATTCTCA+CGG | 0.629587 | 3.4:-72188116 | MS.gene29113:CDS |
| CGAATAGAAGAACAGTTCCA+AGG | 0.630132 | 3.4:+72186799 | None:intergenic |
| GGATCTTGAGGAAGATCGAG+TGG | 0.634181 | 3.4:+72188245 | None:intergenic |
| ACACCAACATCTCTCGAGCA+AGG | 0.643888 | 3.4:-72185579 | MS.gene29113:CDS |
| ACATCAACAGTTATTGCACA+TGG | 0.663755 | 3.4:-72186467 | MS.gene29113:CDS |
| GATCTTGAGGAAGATCGAGT+GGG | 0.666629 | 3.4:+72188246 | None:intergenic |
| CATAAGGCAGAAAACCAATG+AGG | 0.670425 | 3.4:+72186865 | None:intergenic |
| GACATGGAAGGACCTAACAG+AGG | 0.687166 | 3.4:+72188038 | None:intergenic |
| AGCTACTTGTTGGAACTGAG+GGG | 0.687207 | 3.4:+72186776 | None:intergenic |
| CCGCCGCCGAGTTGACACAT+GGG | 0.690890 | 3.4:-72188198 | MS.gene29113:CDS |
| TCACCCATGTGTCAACTCGG+CGG | 0.730803 | 3.4:+72188195 | None:intergenic |
| ATAGAAGAACAGTTCCAAGG+AGG | 0.740367 | 3.4:+72186802 | None:intergenic |
| GCAATCGTTGACGAGCATCG+TGG | 0.744729 | 3.4:+72188133 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAATCAAATTTTATCA+TGG | + | chr3.4:72187591-72187610 | None:intergenic | 10.0% |
| !!! | TTATTTTCTCAAAATATTAT+TGG | - | chr3.4:72186552-72186571 | MS.gene29113:intron | 10.0% |
| !!! | TTTTATTCTATTTAATTTGA+GGG | - | chr3.4:72187249-72187268 | MS.gene29113:intron | 10.0% |
| !! | AATTAGAAAAGAAATTTACA+CGG | + | chr3.4:72186284-72186303 | None:intergenic | 15.0% |
| !! | TAAAAATTACAGTTTACATT+AGG | - | chr3.4:72188007-72188026 | MS.gene29113:intron | 15.0% |
| !! | TTCAATAAATTTAACCAAAT+AGG | - | chr3.4:72187699-72187718 | MS.gene29113:CDS | 15.0% |
| !! | TTTAAATGCACAATAATAAA+TGG | - | chr3.4:72187561-72187580 | MS.gene29113:intron | 15.0% |
| !!! | AATTTCTTTTCTAATTCATT+TGG | - | chr3.4:72186288-72186307 | MS.gene29113:intron | 15.0% |
| !!! | GAATTTCTTTTTCAATTTAA+TGG | + | chr3.4:72187682-72187701 | None:intergenic | 15.0% |
| !!! | GTTTTATTCTATTTAATTTG+AGG | - | chr3.4:72187248-72187267 | MS.gene29113:intron | 15.0% |
| !!! | TTTATTCTATTTAATTTGAG+GGG | - | chr3.4:72187250-72187269 | MS.gene29113:intron | 15.0% |
| !!! | TTTGTTTTTAATTTACAGTA+AGG | - | chr3.4:72186680-72186699 | MS.gene29113:CDS | 15.0% |
| !!! | TTTTTGATCAATTTTTTCTT+TGG | - | chr3.4:72186912-72186931 | MS.gene29113:CDS | 15.0% |
| !! | AGTGATTAATTAAAGTGAAA+TGG | - | chr3.4:72185960-72185979 | MS.gene29113:intron | 20.0% |
| !!! | GTGATATAATGAATTTTGTT+AGG | + | chr3.4:72187518-72187537 | None:intergenic | 20.0% |
| !!! | TGAAATTGAACTTCATTTTA+GGG | - | chr3.4:72186028-72186047 | MS.gene29113:intron | 20.0% |
| !!! | TGAATTTGAGTTTCTAATTT+AGG | - | chr3.4:72185879-72185898 | MS.gene29113:intron | 20.0% |
| !!! | TTCATTTTAGGGTTAATTTA+GGG | - | chr3.4:72186039-72186058 | MS.gene29113:intron | 20.0% |
| !!! | TTTACATTAGGTTGAATAAT+AGG | - | chr3.4:72188019-72188038 | MS.gene29113:intron | 20.0% |
| !!! | TTTTAATTTACAGTAAGGAT+TGG | - | chr3.4:72186685-72186704 | MS.gene29113:CDS | 20.0% |
| ! | ACCTCTTCAGATTAAAAATT+AGG | + | chr3.4:72187623-72187642 | None:intergenic | 25.0% |
| ! | CATCAAATCATTAAATGAGA+AGG | - | chr3.4:72187308-72187327 | MS.gene29113:intron | 25.0% |
| ! | CTGTGTTTAATGTCTAATTT+AGG | - | chr3.4:72185931-72185950 | MS.gene29113:intron | 25.0% |
| ! | CTTGAAAAATTGTCTACATA+AGG | + | chr3.4:72187008-72187027 | None:intergenic | 25.0% |
| ! | TTCTTTCTATATATGCAGAT+TGG | - | chr3.4:72187331-72187350 | MS.gene29113:intron | 25.0% |
| ! | TTTGCATCATTTCAATCAAT+TGG | + | chr3.4:72186461-72186480 | None:intergenic | 25.0% |
| !! | GTGAAATTGAACTTCATTTT+AGG | - | chr3.4:72186027-72186046 | MS.gene29113:intron | 25.0% |
| !! | TTGATTTTGTCTCTGTATAT+CGG | - | chr3.4:72187969-72187988 | MS.gene29113:intron | 25.0% |
| !!! | CTTCATTTTAGGGTTAATTT+AGG | - | chr3.4:72186038-72186057 | MS.gene29113:intron | 25.0% |
| !!! | TATATACTATCTGCTTTTGT+GGG | - | chr3.4:72186715-72186734 | MS.gene29113:CDS | 25.0% |
| !!! | TTGATCAATTTTTTCTTTGG+TGG | - | chr3.4:72186915-72186934 | MS.gene29113:intron | 25.0% |
| AAAGGAATACAGTCAACATA+TGG | + | chr3.4:72187416-72187435 | None:intergenic | 30.0% | |
| AAGAAAAAGAGAAGCCATTA+AGG | + | chr3.4:72186743-72186762 | None:intergenic | 30.0% | |
| CTGGAAATATCATACCAAAA+AGG | - | chr3.4:72186840-72186859 | MS.gene29113:CDS | 30.0% | |
| TCAATTTGATCTCCTTTACT+TGG | + | chr3.4:72187104-72187123 | None:intergenic | 30.0% | |
| TTTAATGATTTGATGCATGC+CGG | + | chr3.4:72187303-72187322 | None:intergenic | 30.0% | |
| ! | GCCTAATTTTTAATCTGAAG+AGG | - | chr3.4:72187619-72187638 | MS.gene29113:CDS | 30.0% |
| ! | GGAATTTTATAATGCAACGA+TGG | - | chr3.4:72186069-72186088 | MS.gene29113:intron | 30.0% |
| ! | GGGTTAATTTAGGGTTTAAA+AGG | - | chr3.4:72186048-72186067 | MS.gene29113:intron | 30.0% |
| ! | GTTTCTAATTTAGGTTTCAG+AGG | - | chr3.4:72185888-72185907 | MS.gene29113:intron | 30.0% |
| ! | GTTTGTTGATATTAACTGCA+AGG | - | chr3.4:72187652-72187671 | MS.gene29113:CDS | 30.0% |
| ! | TCTACGAAAGAACTTTTTGA+CGG | - | chr3.4:72186139-72186158 | MS.gene29113:intron | 30.0% |
| ! | TGATTTTGTAATGTCAGTGT+TGG | - | chr3.4:72186384-72186403 | MS.gene29113:intron | 30.0% |
| ! | TTATGGTGTTAATCCAACTA+GGG | - | chr3.4:72185688-72185707 | MS.gene29113:intron | 30.0% |
| !! | CTATATACTATCTGCTTTTG+TGG | - | chr3.4:72186714-72186733 | MS.gene29113:CDS | 30.0% |
| !! | CTGTACTTGGTGTTTAATTT+AGG | - | chr3.4:72185985-72186004 | MS.gene29113:intron | 30.0% |
| !! | TGAGTTGAATTGAGTTTTGT+TGG | + | chr3.4:72188090-72188109 | None:intergenic | 30.0% |
| !!! | GAGTTGAATTGAGTTTTGTT+GGG | + | chr3.4:72188089-72188108 | None:intergenic | 30.0% |
| !!! | GTAGACAATTTTTCAAGCAT+TGG | - | chr3.4:72187011-72187030 | MS.gene29113:intron | 30.0% |
| AACAATGAGAAACAGCTATG+AGG | + | chr3.4:72186880-72186899 | None:intergenic | 35.0% | |
| AAGTGAAATGGAACTGTACT+TGG | - | chr3.4:72185972-72185991 | MS.gene29113:intron | 35.0% | |
| AATCTGAAGAGGTCAATTGT+TGG | - | chr3.4:72187630-72187649 | MS.gene29113:CDS | 35.0% | |
| ACACCGGATACACATTTAAT+CGG | - | chr3.4:72186424-72186443 | MS.gene29113:CDS | 35.0% | |
| ACATCAACAGTTATTGCACA+TGG | - | chr3.4:72187387-72187406 | MS.gene29113:intron | 35.0% | |
| AGAGAAACAATCCTAGAAAC+TGG | + | chr3.4:72187179-72187198 | None:intergenic | 35.0% | |
| ATCTATAAAGCAGAGAACAG+TGG | + | chr3.4:72186603-72186622 | None:intergenic | 35.0% | |
| CAACCGATTAAATGTGTATC+CGG | + | chr3.4:72186430-72186449 | None:intergenic | 35.0% | |
| CTTCTATCTATTGTGCTTTC+CGG | - | chr3.4:72187281-72187300 | MS.gene29113:intron | 35.0% | |
| GCTGACATAACATTCCTATT+TGG | + | chr3.4:72187716-72187735 | None:intergenic | 35.0% | |
| TACTAACTGATATGTGTCAC+TGG | - | chr3.4:72187737-72187756 | MS.gene29113:intron | 35.0% | |
| TGTCTTCTTGCAGTTCTTTA+TGG | - | chr3.4:72187359-72187378 | MS.gene29113:intron | 35.0% | |
| TGTTAGTAGTTTACCTGCTT+TGG | - | chr3.4:72187774-72187793 | MS.gene29113:intron | 35.0% | |
| TTAGCTGTATACCTCACAAA+AGG | + | chr3.4:72187468-72187487 | None:intergenic | 35.0% | |
| TTCTATATATGCAGATTGGC+TGG | - | chr3.4:72187335-72187354 | MS.gene29113:intron | 35.0% | |
| TTGAATGTATCCACATGTGT+CGG | + | chr3.4:72186527-72186546 | None:intergenic | 35.0% | |
| TTTATATCAGGATTCCTCCT+TGG | - | chr3.4:72187038-72187057 | MS.gene29113:CDS | 35.0% | |
| TTTGAACACTCACTTTGACA+TGG | + | chr3.4:72185835-72185854 | None:intergenic | 35.0% | |
| ! | CATTGCTTTCAGAACTTGTT+TGG | - | chr3.4:72186815-72186834 | MS.gene29113:CDS | 35.0% |
| ! | CGAAAAACTAAGCACCTTTT+TGG | + | chr3.4:72186857-72186876 | None:intergenic | 35.0% |
| ! | GATTTGTTTCCATACTAGTC+AGG | - | chr3.4:72187883-72187902 | MS.gene29113:intron | 35.0% |
| ! | GTTATGGTGTTAATCCAACT+AGG | - | chr3.4:72185687-72185706 | MS.gene29113:intron | 35.0% |
| ! | TGAGGTATACAGCTAACTTT+TGG | - | chr3.4:72187472-72187491 | MS.gene29113:intron | 35.0% |
| ! | TGTTGTAGGTTGGATGAAAT+GGG | - | chr3.4:72186113-72186132 | MS.gene29113:intron | 35.0% |
| ! | TTGTTGTAGGTTGGATGAAA+TGG | - | chr3.4:72186112-72186131 | MS.gene29113:intron | 35.0% |
| ! | TTTCAGAACTTGTTTGGAAC+TGG | - | chr3.4:72186821-72186840 | MS.gene29113:CDS | 35.0% |
| !!! | AGCATTGGTGGTTTTATATC+AGG | - | chr3.4:72187026-72187045 | MS.gene29113:CDS | 35.0% |
| !!! | GACAATTTTTCAAGCATTGG+TGG | - | chr3.4:72187014-72187033 | MS.gene29113:intron | 35.0% |
| !!! | TTGAATTGAGTTTTGTTGGG+AGG | + | chr3.4:72188086-72188105 | None:intergenic | 35.0% |
| !!! | TTTTTTCTTTGGTGGAATGC+AGG | - | chr3.4:72186923-72186942 | MS.gene29113:intron | 35.0% |
| AAAAGTCCAGCGTGCAAAAA+TGG | + | chr3.4:72186197-72186216 | None:intergenic | 40.0% | |
| AAACATACAGCAGAGTGAAG+AGG | + | chr3.4:72187205-72187224 | None:intergenic | 40.0% | |
| AAATCACCCATGTGTCAACT+CGG | + | chr3.4:72185665-72185684 | None:intergenic | 40.0% | |
| AACACTCACTTTGACATGGA+AGG | + | chr3.4:72185831-72185850 | None:intergenic | 40.0% | |
| AATCACTTCCACTTCCACTT+CGG | + | chr3.4:72186369-72186388 | None:intergenic | 40.0% | |
| ACTGTATTCCTTTCACAAGC+TGG | - | chr3.4:72187423-72187442 | MS.gene29113:intron | 40.0% | |
| ACTTGACGATGACATGTTTG+GGG | - | chr3.4:72188227-72188246 | MS.gene29113:CDS | 40.0% | |
| ATAGAAGAACAGTTCCAAGG+AGG | + | chr3.4:72187055-72187074 | None:intergenic | 40.0% | |
| ATATAGCTAGTAGCCAAAGC+AGG | + | chr3.4:72187790-72187809 | None:intergenic | 40.0% | |
| ATTGCCAACAAGAAACAGTG+TGG | + | chr3.4:72187818-72187837 | None:intergenic | 40.0% | |
| CAACAAGTAGCTCCAAGTAA+AGG | - | chr3.4:72187089-72187108 | MS.gene29113:CDS | 40.0% | |
| CACATGGGTGATTTCTGTTA+TGG | - | chr3.4:72185671-72185690 | MS.gene29113:intron | 40.0% | |
| CACTTGACGATGACATGTTT+GGG | - | chr3.4:72188226-72188245 | MS.gene29113:CDS | 40.0% | |
| CATAAGGCAGAAAACCAATG+AGG | + | chr3.4:72186992-72187011 | None:intergenic | 40.0% | |
| CGAATAGAAGAACAGTTCCA+AGG | + | chr3.4:72187058-72187077 | None:intergenic | 40.0% | |
| CGGATACACATTTAATCGGT+TGG | - | chr3.4:72186428-72186447 | MS.gene29113:CDS | 40.0% | |
| CTTGCTGAAAATCCTCTGTT+AGG | - | chr3.4:72185804-72185823 | MS.gene29113:intron | 40.0% | |
| CTTTACTTGGAGCTACTTGT+TGG | + | chr3.4:72187091-72187110 | None:intergenic | 40.0% | |
| GATTGCTTCACCAATTCTCA+CGG | - | chr3.4:72185738-72185757 | MS.gene29113:intron | 40.0% | |
| GGTGCTCTATTTGGATTACT+AGG | - | chr3.4:72186790-72186809 | MS.gene29113:CDS | 40.0% | |
| TCACTTGACGATGACATGTT+TGG | - | chr3.4:72188225-72188244 | MS.gene29113:CDS | 40.0% | |
| TGACAAACACATGCTTATGC+TGG | - | chr3.4:72188162-72188181 | MS.gene29113:CDS | 40.0% | |
| TGTACTACAACTGCAGACAA+TGG | - | chr3.4:72188192-72188211 | MS.gene29113:CDS | 40.0% | |
| TTTGTGTGCAACTTCCTCAT+TGG | - | chr3.4:72186975-72186994 | MS.gene29113:intron | 40.0% | |
| ! | AACAGAGGATTTTCAGCAAG+AGG | + | chr3.4:72185804-72185823 | None:intergenic | 40.0% |
| ! | AGACAGAGAAACCTTTTGTG+AGG | - | chr3.4:72187454-72187473 | MS.gene29113:intron | 40.0% |
| ! | CTGTTGTTGTTGTTGTAGGT+TGG | - | chr3.4:72186103-72186122 | MS.gene29113:intron | 40.0% |
| ! | CTTTCCACACTGTTTCTTGT+TGG | - | chr3.4:72187811-72187830 | MS.gene29113:intron | 40.0% |
| ! | GATTGCACTTTTCCATCTCT+TGG | - | chr3.4:72185762-72185781 | MS.gene29113:intron | 40.0% |
| ! | GCACTGACATTGTGTATTGA+AGG | - | chr3.4:72186489-72186508 | MS.gene29113:CDS | 40.0% |
| ! | GTTGCTGTTGTTGTTGTTGT+AGG | - | chr3.4:72186099-72186118 | MS.gene29113:intron | 40.0% |
| ! | TTGTGTATTGAAGGCGTGTT+TGG | - | chr3.4:72186498-72186517 | MS.gene29113:CDS | 40.0% |
| !! | TGTTTCTATGTTTTCCGCAC+TGG | - | chr3.4:72186315-72186334 | MS.gene29113:intron | 40.0% |
| AACGAGAACCTTCCAAGAGA+TGG | + | chr3.4:72185777-72185796 | None:intergenic | 45.0% | |
| AATCCTTGCTCGAGAGATGT+TGG | + | chr3.4:72188281-72188300 | None:intergenic | 45.0% | |
| ACGACACATAGATACCGAAG+TGG | - | chr3.4:72186352-72186371 | MS.gene29113:intron | 45.0% | |
| ACGATGACATGTTTGGGGAA+TGG | - | chr3.4:72188232-72188251 | MS.gene29113:CDS | 45.0% | |
| AGCTAGACAGACCAGTTTCT+AGG | - | chr3.4:72187165-72187184 | MS.gene29113:intron | 45.0% | |
| AGTGCAATCACCGTGAGAAT+TGG | + | chr3.4:72185751-72185770 | None:intergenic | 45.0% | |
| CATAGATACCGAAGTGGAAG+TGG | - | chr3.4:72186358-72186377 | MS.gene29113:intron | 45.0% | |
| CTCTGCAGTGTCATCTATGT+TGG | - | chr3.4:72186233-72186252 | MS.gene29113:intron | 45.0% | |
| CTTCAAAACATCCCTGCTGT+TGG | - | chr3.4:72186760-72186779 | MS.gene29113:CDS | 45.0% | |
| GATCTTGAGGAAGATCGAGT+GGG | + | chr3.4:72185611-72185630 | None:intergenic | 45.0% | |
| GGTTCTTCTGGTGCTCTATT+TGG | - | chr3.4:72186781-72186800 | MS.gene29113:CDS | 45.0% | |
| GTGAGACATGTGTTAGACAC+CGG | - | chr3.4:72186408-72186427 | MS.gene29113:CDS | 45.0% | |
| TGACGGAACGTCATCAAACT+TGG | - | chr3.4:72186156-72186175 | MS.gene29113:intron | 45.0% | |
| TGCAGAGATTGATCGCAAGA+TGG | + | chr3.4:72186220-72186239 | None:intergenic | 45.0% | |
| TGTGAGCTTCCTGACTAGTA+TGG | + | chr3.4:72187895-72187914 | None:intergenic | 45.0% | |
| TTTGGGGAATGGCAACTTCA+AGG | - | chr3.4:72188243-72188262 | MS.gene29113:CDS | 45.0% | |
| ! | AGCTACTTGTTGGAACTGAG+GGG | + | chr3.4:72187081-72187100 | None:intergenic | 45.0% |
| ! | GAGCTACTTGTTGGAACTGA+GGG | + | chr3.4:72187082-72187101 | None:intergenic | 45.0% |
| ! | GCACTTTTCCATCTCTTGGA+AGG | - | chr3.4:72185766-72185785 | MS.gene29113:intron | 45.0% |
| ! | TGCTTTTGTGGGTGCCTTAA+TGG | - | chr3.4:72186726-72186745 | MS.gene29113:CDS | 45.0% |
| !! | ACGTTTCCATTTTTGCACGC+TGG | - | chr3.4:72186188-72186207 | MS.gene29113:intron | 45.0% |
| ACACCAACATCTCTCGAGCA+AGG | - | chr3.4:72188275-72188294 | MS.gene29113:CDS | 50.0% | |
| ATTCGCCTAGAGCAGGAGTT+TGG | - | chr3.4:72186257-72186276 | MS.gene29113:intron | 50.0% | |
| CACCAGAAGAACCAACAGCA+GGG | + | chr3.4:72186774-72186793 | None:intergenic | 50.0% | |
| CGGTATCTATGTGTCGTGTC+CGG | + | chr3.4:72186349-72186368 | None:intergenic | 50.0% | |
| GACATGGAAGGACCTAACAG+AGG | + | chr3.4:72185819-72185838 | None:intergenic | 50.0% | |
| GATTTGAGCTGCGGATCTTG+AGG | + | chr3.4:72185624-72185643 | None:intergenic | 50.0% | |
| GGATCTTGAGGAAGATCGAG+TGG | + | chr3.4:72185612-72185631 | None:intergenic | 50.0% | |
| TGGCGATGAAGAACCCTAGT+TGG | + | chr3.4:72185704-72185723 | None:intergenic | 50.0% | |
| TGTTGGAATTCGCCTAGAGC+AGG | - | chr3.4:72186250-72186269 | MS.gene29113:intron | 50.0% | |
| TTCGCCTAGAGCAGGAGTTT+GGG | - | chr3.4:72186258-72186277 | MS.gene29113:intron | 50.0% | |
| TTGCAGTGCCAGCTTGTGAA+AGG | + | chr3.4:72187434-72187453 | None:intergenic | 50.0% | |
| ! | GGAGCTACTTGTTGGAACTG+AGG | + | chr3.4:72187083-72187102 | None:intergenic | 50.0% |
| !! | ATCCCTGCTGTTGGTTCTTC+TGG | - | chr3.4:72186769-72186788 | MS.gene29113:CDS | 50.0% |
| !! | TGTTTGGTGTCCGACACATG+TGG | - | chr3.4:72186514-72186533 | MS.gene29113:intron | 50.0% |
| GCACCAGAAGAACCAACAGC+AGG | + | chr3.4:72186775-72186794 | None:intergenic | 55.0% | |
| TCACCCATGTGTCAACTCGG+CGG | + | chr3.4:72185662-72185681 | None:intergenic | 55.0% | |
| ! | GCAATCGTTGACGAGCATCG+TGG | + | chr3.4:72185724-72185743 | None:intergenic | 55.0% |
| ! | TTCCGCACTGGCACAAACAC+CGG | - | chr3.4:72186327-72186346 | MS.gene29113:intron | 55.0% |
| ACGGCCCAAACTCCTGCTCT+AGG | + | chr3.4:72186265-72186284 | None:intergenic | 60.0% | |
| GTCCGGTGTTTGTGCCAGTG+CGG | + | chr3.4:72186332-72186351 | None:intergenic | 60.0% | |
| TCGAGTGGGAGCTTCTTCGC+TGG | + | chr3.4:72185597-72185616 | None:intergenic | 60.0% | |
| CCCATGTGTCAACTCGGCGG+CGG | + | chr3.4:72185659-72185678 | None:intergenic | 65.0% | |
| CGGCGGCTGGATTTGAGCTG+CGG | + | chr3.4:72185633-72185652 | None:intergenic | 65.0% | |
| TGTCAACTCGGCGGCGGAGA+CGG | + | chr3.4:72185653-72185672 | None:intergenic | 65.0% | |
| ! | CCGCCGCCGAGTTGACACAT+GGG | - | chr3.4:72185656-72185675 | MS.gene29113:intron | 65.0% |
| ! | TCCGCCGCCGAGTTGACACA+TGG | - | chr3.4:72185655-72185674 | MS.gene29113:intron | 65.0% |
| CAACTCGGCGGCGGAGACGG+CGG | + | chr3.4:72185650-72185669 | None:intergenic | 75.0% | |
| ! | TCGGCGGCGGAGACGGCGGC+TGG | + | chr3.4:72185646-72185665 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 72185549 | 72188327 | 72185549 | ID=MS.gene29113 |
| chr3.4 | mRNA | 72185549 | 72188327 | 72185549 | ID=MS.gene29113.t1;Parent=MS.gene29113 |
| chr3.4 | exon | 72188035 | 72188327 | 72188035 | ID=MS.gene29113.t1.exon1;Parent=MS.gene29113.t1 |
| chr3.4 | CDS | 72188035 | 72188327 | 72188035 | ID=cds.MS.gene29113.t1;Parent=MS.gene29113.t1 |
| chr3.4 | exon | 72187592 | 72187755 | 72187592 | ID=MS.gene29113.t1.exon2;Parent=MS.gene29113.t1 |
| chr3.4 | CDS | 72187592 | 72187755 | 72187592 | ID=cds.MS.gene29113.t1;Parent=MS.gene29113.t1 |
| chr3.4 | exon | 72187015 | 72187178 | 72187015 | ID=MS.gene29113.t1.exon3;Parent=MS.gene29113.t1 |
| chr3.4 | CDS | 72187015 | 72187178 | 72187015 | ID=cds.MS.gene29113.t1;Parent=MS.gene29113.t1 |
| chr3.4 | exon | 72186660 | 72186931 | 72186660 | ID=MS.gene29113.t1.exon4;Parent=MS.gene29113.t1 |
| chr3.4 | CDS | 72186660 | 72186931 | 72186660 | ID=cds.MS.gene29113.t1;Parent=MS.gene29113.t1 |
| chr3.4 | exon | 72186401 | 72186527 | 72186401 | ID=MS.gene29113.t1.exon5;Parent=MS.gene29113.t1 |
| chr3.4 | CDS | 72186401 | 72186527 | 72186401 | ID=cds.MS.gene29113.t1;Parent=MS.gene29113.t1 |
| chr3.4 | exon | 72185549 | 72185668 | 72185549 | ID=MS.gene29113.t1.exon6;Parent=MS.gene29113.t1 |
| chr3.4 | CDS | 72185549 | 72185668 | 72185549 | ID=cds.MS.gene29113.t1;Parent=MS.gene29113.t1 |
| Gene Sequence |
| Protein sequence |
