Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29346.t1 | XP_003626273.1 | 97.8 | 489 | 11 | 0 | 1 | 489 | 1 | 489 | 3.30E-263 | 917.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29346.t1 | Q9SVT8 | 76.4 | 478 | 108 | 2 | 2 | 474 | 3 | 480 | 1.6e-202 | 706.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29346.t1 | G7KYM3 | 97.8 | 489 | 11 | 0 | 1 | 489 | 1 | 489 | 2.4e-263 | 917.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29346 | MS.gene058774 | PPI |
| MS.gene29346 | MS.gene005052 | PPI |
| MS.gene29346 | MS.gene74897 | PPI |
| MS.gene29346 | MS.gene058775 | PPI |
| MS.gene29346 | MS.gene005054 | PPI |
| MS.gene07605 | MS.gene29346 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29346.t1 | MTR_7g113340 | 97.751 | 489 | 11 | 0 | 1 | 489 | 1 | 489 | 0.0 | 969 |
| MS.gene29346.t1 | MTR_7g098930 | 90.000 | 490 | 48 | 1 | 1 | 489 | 1 | 490 | 0.0 | 885 |
| MS.gene29346.t1 | MTR_1g045550 | 73.849 | 478 | 123 | 2 | 1 | 477 | 1 | 477 | 0.0 | 730 |
| MS.gene29346.t1 | MTR_1g079760 | 72.393 | 489 | 129 | 3 | 1 | 485 | 1 | 487 | 0.0 | 701 |
| MS.gene29346.t1 | MTR_3g463730 | 65.169 | 445 | 148 | 5 | 41 | 483 | 8 | 447 | 0.0 | 574 |
| MS.gene29346.t1 | MTR_7g115050 | 28.283 | 396 | 230 | 16 | 112 | 489 | 100 | 459 | 4.20e-23 | 102 |
| MS.gene29346.t1 | MTR_1g036410 | 26.439 | 469 | 278 | 17 | 47 | 486 | 24 | 454 | 9.50e-21 | 95.5 |
| MS.gene29346.t1 | MTR_8g074750 | 25.328 | 458 | 282 | 14 | 47 | 480 | 30 | 451 | 3.80e-17 | 84.3 |
| MS.gene29346.t1 | MTR_7g069640 | 27.224 | 371 | 225 | 10 | 123 | 485 | 129 | 462 | 5.72e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29346.t1 | AT4G13510 | 72.385 | 478 | 128 | 3 | 5 | 481 | 2 | 476 | 0.0 | 727 |
| MS.gene29346.t1 | AT3G24290 | 73.319 | 476 | 124 | 2 | 5 | 480 | 6 | 478 | 0.0 | 721 |
| MS.gene29346.t1 | AT4G28700 | 75.732 | 478 | 111 | 2 | 2 | 474 | 3 | 480 | 0.0 | 719 |
| MS.gene29346.t1 | AT3G24300 | 71.458 | 480 | 133 | 3 | 5 | 483 | 6 | 482 | 0.0 | 711 |
| MS.gene29346.t1 | AT1G64780 | 71.984 | 489 | 128 | 5 | 2 | 483 | 4 | 490 | 0.0 | 700 |
| MS.gene29346.t1 | AT2G38290 | 26.013 | 469 | 283 | 15 | 47 | 488 | 20 | 451 | 1.30e-14 | 76.6 |
| MS.gene29346.t1 | AT2G38290 | 27.596 | 366 | 216 | 12 | 135 | 488 | 7 | 335 | 6.62e-13 | 70.5 |
Find 110 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACATGTTGTTCAGATTT+TGG | 0.184817 | 7.2:+3850335 | MS.gene29346:CDS |
| CTTAATATTGTAAAAGCTTA+TGG | 0.207812 | 7.2:+3849874 | MS.gene29346:CDS |
| GGTTCTCCTGATAGACCTTA+TGG | 0.231859 | 7.2:+3850279 | MS.gene29346:CDS |
| TTCATGGTGGTTGTGGTACT+TGG | 0.252134 | 7.2:+3850199 | MS.gene29346:CDS |
| CGATTGTTGCTCATTGGTTT+TGG | 0.263369 | 7.2:+3849590 | MS.gene29346:CDS |
| TAGTGGTACTTTAGTTGTTT+TGG | 0.264485 | 7.2:+3849801 | MS.gene29346:CDS |
| TACTTCAAATGCACGTCTTT+TGG | 0.271844 | 7.2:-3850517 | None:intergenic |
| TATGTGAATGAAGTTTATTC+TGG | 0.286396 | 7.2:+3850258 | MS.gene29346:CDS |
| GTACCACTATGTCCTCTAAT+TGG | 0.291911 | 7.2:-3849787 | None:intergenic |
| GGGAGGTGGTGGAAGATTAT+TGG | 0.298602 | 7.2:+3850311 | MS.gene29346:CDS |
| CATTTAGTTGGTGCTGTTGC+TGG | 0.308317 | 7.2:+3849700 | MS.gene29346:CDS |
| TATGGTCAATGGAGTGCTAT+TGG | 0.327941 | 7.2:+3849913 | MS.gene29346:CDS |
| TGCTTGGGTGAGTATTACTA+TGG | 0.328895 | 7.2:+3850365 | MS.gene29346:CDS |
| TGGCAAAAGCCCATTGAAAA+AGG | 0.329634 | 7.2:-3849471 | None:intergenic |
| TGATCAAATCTACCAATTCT+TGG | 0.336025 | 7.2:-3849748 | None:intergenic |
| AACAATCCATAAGGTCTATC+AGG | 0.338141 | 7.2:-3850285 | None:intergenic |
| CTTGAAGCTGCACAACTTCA+TGG | 0.342709 | 7.2:+3850183 | MS.gene29346:CDS |
| GCAGCTCTCACTACTTTGTT+TGG | 0.346350 | 7.2:+3849973 | MS.gene29346:CDS |
| TGTGGTGTTGTTCATTTAGT+TGG | 0.354549 | 7.2:+3849688 | MS.gene29346:CDS |
| TTGTGGATTTGTTGCTGCTT+GGG | 0.357633 | 7.2:+3850110 | MS.gene29346:CDS |
| TCATGGTGGTTGTGGTACTT+GGG | 0.382463 | 7.2:+3850200 | MS.gene29346:CDS |
| CCATGGGCTGCAATTATTTG+TGG | 0.385626 | 7.2:+3850093 | MS.gene29346:CDS |
| TTTATCCGATTGTTGCTCAT+TGG | 0.385751 | 7.2:+3849584 | MS.gene29346:CDS |
| CGAGGTAGAGATGGAAGGTT+TGG | 0.387091 | 7.2:+3850437 | MS.gene29346:CDS |
| TTACTTTGGTTTGGTTGGTA+TGG | 0.390915 | 7.2:+3849832 | MS.gene29346:CDS |
| ATTGGTTAACATAATGTTCA+TGG | 0.391374 | 7.2:-3849305 | None:intergenic |
| TGCTGATGGTTGGGGTAGTC+CGG | 0.394425 | 7.2:+3849615 | MS.gene29346:CDS |
| ATGGAGGTCGGAGGCGGAAC+AGG | 0.394802 | 7.2:-3849086 | None:intergenic |
| GGATTGTTGTTGGGAGGTGG+TGG | 0.409187 | 7.2:+3850300 | MS.gene29346:CDS |
| GGTGTTCTGTTGTGGATCCA+TGG | 0.413692 | 7.2:+3850076 | MS.gene29346:CDS |
| TTTGTGGATTTGTTGCTGCT+TGG | 0.421882 | 7.2:+3850109 | MS.gene29346:CDS |
| AATGTTCTTGATGCCGCAAT+AGG | 0.425840 | 7.2:+3849325 | MS.gene29346:CDS |
| TTTATTGAAGGACCAAGAAT+TGG | 0.431351 | 7.2:+3849736 | MS.gene29346:CDS |
| CGCTGCTGCCGAGGAGAGCA+TGG | 0.436798 | 7.2:-3849105 | None:intergenic |
| TTTGGTAAACGTATGCAAAC+AGG | 0.437183 | 7.2:+3849991 | MS.gene29346:CDS |
| GGTGAAAGTGTTCCAATTAG+AGG | 0.444019 | 7.2:+3849775 | MS.gene29346:CDS |
| GGTGAAAGTGGTAATTACTA+TGG | 0.445774 | 7.2:+3849895 | MS.gene29346:CDS |
| ATGGTCAATGGAGTGCTATT+GGG | 0.445910 | 7.2:+3849914 | MS.gene29346:CDS |
| TATGGATTGTTGTTGGGAGG+TGG | 0.448346 | 7.2:+3850297 | MS.gene29346:CDS |
| TTCATAAATTGAATTTGCTT+AGG | 0.449482 | 7.2:+3850406 | MS.gene29346:CDS |
| GATGTATGTAATGGTTTGCT+TGG | 0.461730 | 7.2:+3850030 | MS.gene29346:CDS |
| AGACCTTATGGATTGTTGTT+GGG | 0.467628 | 7.2:+3850291 | MS.gene29346:CDS |
| GCTGTCACAACTACATTGGC+TGG | 0.468245 | 7.2:+3849943 | MS.gene29346:CDS |
| TTTAACTAGCCATGGTGGAT+TGG | 0.471431 | 7.2:+3850461 | MS.gene29346:CDS |
| TTTCCGATGAAACCGTTTGA+AGG | 0.478481 | 7.2:-3849394 | None:intergenic |
| GTATGTAATGGTTTGCTTGG+TGG | 0.479792 | 7.2:+3850033 | MS.gene29346:CDS |
| GAAGCCGCCACAGATGTATT+CGG | 0.481005 | 7.2:-3849146 | None:intergenic |
| AACTGCAGGGTGTTCTGTTG+TGG | 0.482968 | 7.2:+3850068 | MS.gene29346:CDS |
| TAGACCTTATGGATTGTTGT+TGG | 0.483036 | 7.2:+3850290 | MS.gene29346:CDS |
| TGGAGTTTGCGCTGCTGCCG+AGG | 0.483187 | 7.2:-3849114 | None:intergenic |
| GTAAAAGCTTATGGTGAAAG+TGG | 0.486953 | 7.2:+3849883 | MS.gene29346:CDS |
| GTGGTAATTACTATGGTCAA+TGG | 0.487253 | 7.2:+3849902 | MS.gene29346:CDS |
| AACAATCGGATAAACTAAAC+CGG | 0.492578 | 7.2:-3849575 | None:intergenic |
| ACACCTTCAAACGGTTTCAT+CGG | 0.497352 | 7.2:+3849391 | MS.gene29346:CDS |
| GGATTGGCTTATGAGTATCA+TGG | 0.498989 | 7.2:+3850477 | MS.gene29346:CDS |
| TTGAAGGTGTTCCAAAAGCT+AGG | 0.502612 | 7.2:-3849378 | None:intergenic |
| GACGTGCATTTGAAGTATGA+TGG | 0.505539 | 7.2:+3850523 | MS.gene29346:CDS |
| GTCTTCACCCGAGGTAGAGA+TGG | 0.506405 | 7.2:+3850428 | MS.gene29346:CDS |
| GAGAGCATGGAGGTCGGAGG+CGG | 0.507437 | 7.2:-3849092 | None:intergenic |
| CAAGGTAAGCTGAGAAGAGA+AGG | 0.507589 | 7.2:-3849222 | None:intergenic |
| GATTGGCTTATGAGTATCAT+GGG | 0.514594 | 7.2:+3850478 | MS.gene29346:CDS |
| CATGGTGGTTGTGGTACTTG+GGG | 0.523447 | 7.2:+3850201 | MS.gene29346:CDS |
| AAACCTTCCATCTCTACCTC+GGG | 0.523781 | 7.2:-3850435 | None:intergenic |
| GTGTTCTGTTGTGGATCCAT+GGG | 0.527050 | 7.2:+3850077 | MS.gene29346:CDS |
| TCCGACCTCCATGCTCTCCT+CGG | 0.531527 | 7.2:+3849097 | MS.gene29346:CDS |
| AGTGTTAGTGATGTATGTAA+TGG | 0.532742 | 7.2:+3850021 | MS.gene29346:CDS |
| AACGTATGCAAACAGGCCAT+TGG | 0.534415 | 7.2:+3849998 | MS.gene29346:CDS |
| CAAAACCAATGAGCAACAAT+CGG | 0.537973 | 7.2:-3849589 | None:intergenic |
| GTCGATGAATTTGTTTGCGA+CGG | 0.538058 | 7.2:-3849173 | None:intergenic |
| CCTCCCAACAACAATCCATA+AGG | 0.542714 | 7.2:-3850294 | None:intergenic |
| GGTTTGGATTTAACTAGCCA+TGG | 0.543424 | 7.2:+3850453 | MS.gene29346:CDS |
| GCACAACTTCATGGTGGTTG+TGG | 0.547365 | 7.2:+3850192 | MS.gene29346:CDS |
| TGTGATACCTGCTGCAGCAA+TGG | 0.548951 | 7.2:-3849491 | None:intergenic |
| TGAAGGTGTTCCAAAAGCTA+GGG | 0.557787 | 7.2:-3849377 | None:intergenic |
| CCACAAATAATTGCAGCCCA+TGG | 0.565527 | 7.2:-3850093 | None:intergenic |
| CATAGCAAAACCTAATTGCA+TGG | 0.568771 | 7.2:-3849251 | None:intergenic |
| CGTAATCAAAAGATTGTGAA+GGG | 0.572177 | 7.2:-3849441 | None:intergenic |
| ATGGTGGTTGTGGTACTTGG+GGG | 0.572938 | 7.2:+3850202 | MS.gene29346:CDS |
| CCTTATGGATTGTTGTTGGG+AGG | 0.579167 | 7.2:+3850294 | MS.gene29346:CDS |
| GATGTATTCGGCAGCAGCAG+TGG | 0.582784 | 7.2:-3849134 | None:intergenic |
| GTTCTTGATGCCGCAATAGG+TGG | 0.583754 | 7.2:+3849328 | MS.gene29346:CDS |
| TGAAGTTGTGCAGCTTCAAG+AGG | 0.588771 | 7.2:-3850180 | None:intergenic |
| GTAAGTGTTGTCGACAGCAT+AGG | 0.594110 | 7.2:-3849200 | None:intergenic |
| ACAATATTAAGAAAAGAACC+AGG | 0.596151 | 7.2:-3849862 | None:intergenic |
| CAAACCTTCCATCTCTACCT+CGG | 0.602079 | 7.2:-3850436 | None:intergenic |
| CCGTAATCAAAAGATTGTGA+AGG | 0.603065 | 7.2:-3849442 | None:intergenic |
| TCACCCGAGGTAGAGATGGA+AGG | 0.608823 | 7.2:+3850432 | MS.gene29346:CDS |
| GCCGAGGAGAGCATGGAGGT+CGG | 0.609685 | 7.2:-3849098 | None:intergenic |
| TATTGCGGCATCAAGAACAT+TGG | 0.610961 | 7.2:-3849323 | None:intergenic |
| GGCTTATGAGTATCATGGGG+AGG | 0.611944 | 7.2:+3850482 | MS.gene29346:CDS |
| GACAGCTGTCACAACTACAT+TGG | 0.613672 | 7.2:+3849939 | MS.gene29346:CDS |
| ATACATCACTAACACTCCAA+TGG | 0.614445 | 7.2:-3850014 | None:intergenic |
| GCTGCAGCAGGTATCACAAG+TGG | 0.627953 | 7.2:+3849496 | MS.gene29346:CDS |
| TTGGATTTAACTAGCCATGG+TGG | 0.630060 | 7.2:+3850456 | MS.gene29346:CDS |
| CAATATTAAGAAAAGAACCA+GGG | 0.637822 | 7.2:-3849861 | None:intergenic |
| GTCAATGGAGTGCTATTGGG+AGG | 0.640296 | 7.2:+3849917 | MS.gene29346:CDS |
| GTTCCAATTAGAGGACATAG+TGG | 0.643396 | 7.2:+3849784 | MS.gene29346:CDS |
| GCTTGGGTGAGTATTACTAT+GGG | 0.643839 | 7.2:+3850366 | MS.gene29346:CDS |
| GGAACAGGTGAAAGTAGCCA+TGG | 0.643886 | 7.2:-3849071 | None:intergenic |
| AATTGGTAGATTTGATCACG+AGG | 0.645044 | 7.2:+3849753 | MS.gene29346:CDS |
| ATGGTTGGGGTAGTCCGGTG+CGG | 0.658541 | 7.2:+3849620 | MS.gene29346:CDS |
| GAGGAGAGCATGGAGGTCGG+AGG | 0.668518 | 7.2:-3849095 | None:intergenic |
| GCTGCTGCCGAATACATCTG+TGG | 0.675707 | 7.2:+3849139 | MS.gene29346:CDS |
| TTTGCTTAGGTCTTCACCCG+AGG | 0.680243 | 7.2:+3850419 | MS.gene29346:CDS |
| ATTGGTAGATTTGATCACGA+GGG | 0.681956 | 7.2:+3849754 | MS.gene29346:CDS |
| GCTGCCGAATACATCTGTGG+CGG | 0.687449 | 7.2:+3849142 | MS.gene29346:CDS |
| ACTCATAAGCCAATCCACCA+TGG | 0.688384 | 7.2:-3850470 | None:intergenic |
| TGCTGCCGAGGAGAGCATGG+AGG | 0.694743 | 7.2:-3849102 | None:intergenic |
| GAAGCTGCACAACTTCATGG+TGG | 0.721100 | 7.2:+3850186 | MS.gene29346:CDS |
| ATTGGCTTATGAGTATCATG+GGG | 0.743279 | 7.2:+3850479 | MS.gene29346:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATATTGTAAAAGCTTA+TGG | + | chr7.2:3849874-3849893 | MS.gene29346:CDS | 20.0% |
| !!! | ATTTATTCATCGTTTTTAAC+CGG | + | chr7.2:3849556-3849575 | MS.gene29346:CDS | 20.0% |
| !!! | TTCATAAATTGAATTTGCTT+AGG | + | chr7.2:3850406-3850425 | MS.gene29346:CDS | 20.0% |
| ! | ACAATATTAAGAAAAGAACC+AGG | - | chr7.2:3849865-3849884 | None:intergenic | 25.0% |
| ! | ATTGGTTAACATAATGTTCA+TGG | - | chr7.2:3849308-3849327 | None:intergenic | 25.0% |
| ! | CAATATTAAGAAAAGAACCA+GGG | - | chr7.2:3849864-3849883 | None:intergenic | 25.0% |
| ! | TATGTGAATGAAGTTTATTC+TGG | + | chr7.2:3850258-3850277 | MS.gene29346:CDS | 25.0% |
| !!! | GGCATTTTTTTCTATGTTTT+TGG | + | chr7.2:3849349-3849368 | MS.gene29346:CDS | 25.0% |
| !!! | TTCATCGGAAAACATTTTTT+TGG | + | chr7.2:3849406-3849425 | MS.gene29346:CDS | 25.0% |
| !!! | TTTTGGGAACTTTTTTACTT+TGG | + | chr7.2:3849818-3849837 | MS.gene29346:CDS | 25.0% |
| AACAATCGGATAAACTAAAC+CGG | - | chr7.2:3849578-3849597 | None:intergenic | 30.0% | |
| AGTGTTAGTGATGTATGTAA+TGG | + | chr7.2:3850021-3850040 | MS.gene29346:CDS | 30.0% | |
| CGTAATCAAAAGATTGTGAA+GGG | - | chr7.2:3849444-3849463 | None:intergenic | 30.0% | |
| TGATCAAATCTACCAATTCT+TGG | - | chr7.2:3849751-3849770 | None:intergenic | 30.0% | |
| TTTATTGAAGGACCAAGAAT+TGG | + | chr7.2:3849736-3849755 | MS.gene29346:CDS | 30.0% | |
| ! | CATAATGTTCATGGTGTTTT+TGG | - | chr7.2:3849299-3849318 | None:intergenic | 30.0% |
| ! | TAGTGGTACTTTAGTTGTTT+TGG | + | chr7.2:3849801-3849820 | MS.gene29346:CDS | 30.0% |
| !! | AGTGGTACTTTAGTTGTTTT+GGG | + | chr7.2:3849802-3849821 | MS.gene29346:CDS | 30.0% |
| !! | CCTTCACAATCTTTTGATTA+CGG | + | chr7.2:3849442-3849461 | MS.gene29346:CDS | 30.0% |
| !! | CTTCACAATCTTTTGATTAC+GGG | + | chr7.2:3849443-3849462 | MS.gene29346:CDS | 30.0% |
| !! | GAAAATCTTTTGTTTGGTTC+TGG | + | chr7.2:3849646-3849665 | MS.gene29346:CDS | 30.0% |
| !!! | CTTTTTTACTTTGGTTTGGT+TGG | + | chr7.2:3849827-3849846 | MS.gene29346:CDS | 30.0% |
| !!! | GGAACTTTTTTACTTTGGTT+TGG | + | chr7.2:3849823-3849842 | MS.gene29346:CDS | 30.0% |
| AACAATCCATAAGGTCTATC+AGG | - | chr7.2:3850288-3850307 | None:intergenic | 35.0% | |
| AATTGGTAGATTTGATCACG+AGG | + | chr7.2:3849753-3849772 | MS.gene29346:CDS | 35.0% | |
| ATACATCACTAACACTCCAA+TGG | - | chr7.2:3850017-3850036 | None:intergenic | 35.0% | |
| ATTGGTAGATTTGATCACGA+GGG | + | chr7.2:3849754-3849773 | MS.gene29346:CDS | 35.0% | |
| CAAAACCAATGAGCAACAAT+CGG | - | chr7.2:3849592-3849611 | None:intergenic | 35.0% | |
| CATAGCAAAACCTAATTGCA+TGG | - | chr7.2:3849254-3849273 | None:intergenic | 35.0% | |
| CCGTAATCAAAAGATTGTGA+AGG | - | chr7.2:3849445-3849464 | None:intergenic | 35.0% | |
| CTAATTGCATGGCAAAAACA+AGG | - | chr7.2:3849243-3849262 | None:intergenic | 35.0% | |
| GAAAAAAATGCCACCTATTG+CGG | - | chr7.2:3849341-3849360 | None:intergenic | 35.0% | |
| GGTGAAAGTGGTAATTACTA+TGG | + | chr7.2:3849895-3849914 | MS.gene29346:CDS | 35.0% | |
| GTAAAAGCTTATGGTGAAAG+TGG | + | chr7.2:3849883-3849902 | MS.gene29346:CDS | 35.0% | |
| GTGGTAATTACTATGGTCAA+TGG | + | chr7.2:3849902-3849921 | MS.gene29346:CDS | 35.0% | |
| TTTATCCGATTGTTGCTCAT+TGG | + | chr7.2:3849584-3849603 | MS.gene29346:CDS | 35.0% | |
| TTTGGTAAACGTATGCAAAC+AGG | + | chr7.2:3849991-3850010 | MS.gene29346:CDS | 35.0% | |
| ! | AGACCTTATGGATTGTTGTT+GGG | + | chr7.2:3850291-3850310 | MS.gene29346:CDS | 35.0% |
| ! | ATTGGCTTATGAGTATCATG+GGG | + | chr7.2:3850479-3850498 | MS.gene29346:CDS | 35.0% |
| ! | CGGTCTGAAAATCTTTTGTT+TGG | + | chr7.2:3849640-3849659 | MS.gene29346:CDS | 35.0% |
| ! | TACTTCAAATGCACGTCTTT+TGG | - | chr7.2:3850520-3850539 | None:intergenic | 35.0% |
| ! | TAGACCTTATGGATTGTTGT+TGG | + | chr7.2:3850290-3850309 | MS.gene29346:CDS | 35.0% |
| ! | TGCACATGTTGTTCAGATTT+TGG | + | chr7.2:3850335-3850354 | MS.gene29346:CDS | 35.0% |
| !! | GATGTATGTAATGGTTTGCT+TGG | + | chr7.2:3850030-3850049 | MS.gene29346:CDS | 35.0% |
| !! | GATTGGCTTATGAGTATCAT+GGG | + | chr7.2:3850478-3850497 | MS.gene29346:CDS | 35.0% |
| !! | TGTGGTGTTGTTCATTTAGT+TGG | + | chr7.2:3849688-3849707 | MS.gene29346:CDS | 35.0% |
| !! | TTACTTTGGTTTGGTTGGTA+TGG | + | chr7.2:3849832-3849851 | MS.gene29346:CDS | 35.0% |
| !!! | ACGGGTTTTTCCTTTTTCAA+TGG | + | chr7.2:3849461-3849480 | MS.gene29346:CDS | 35.0% |
| !!! | CGGGTTTTTCCTTTTTCAAT+GGG | + | chr7.2:3849462-3849481 | MS.gene29346:CDS | 35.0% |
| !!! | CTTGTTTTTGCCATGCAATT+AGG | + | chr7.2:3849241-3849260 | MS.gene29346:CDS | 35.0% |
| !!! | GTTATTGATTTTGCTGGTTG+TGG | + | chr7.2:3849670-3849689 | MS.gene29346:CDS | 35.0% |
| !!! | TCTGGTGTTATTGATTTTGC+TGG | + | chr7.2:3849664-3849683 | MS.gene29346:CDS | 35.0% |
| !!! | TTTTGGGGTGCTTTTATTGA+AGG | + | chr7.2:3849724-3849743 | MS.gene29346:CDS | 35.0% |
| AATGTTCTTGATGCCGCAAT+AGG | + | chr7.2:3849325-3849344 | MS.gene29346:CDS | 40.0% | |
| ACACCTTCAAACGGTTTCAT+CGG | + | chr7.2:3849391-3849410 | MS.gene29346:CDS | 40.0% | |
| GCTTGGGTGAGTATTACTAT+GGG | + | chr7.2:3850366-3850385 | MS.gene29346:CDS | 40.0% | |
| GGTTTGGATTTAACTAGCCA+TGG | + | chr7.2:3850453-3850472 | MS.gene29346:CDS | 40.0% | |
| GTACCACTATGTCCTCTAAT+TGG | - | chr7.2:3849790-3849809 | None:intergenic | 40.0% | |
| GTTCCAATTAGAGGACATAG+TGG | + | chr7.2:3849784-3849803 | MS.gene29346:CDS | 40.0% | |
| TATTGCGGCATCAAGAACAT+TGG | - | chr7.2:3849326-3849345 | None:intergenic | 40.0% | |
| TGCTTGGGTGAGTATTACTA+TGG | + | chr7.2:3850365-3850384 | MS.gene29346:CDS | 40.0% | |
| TGGCAAAAGCCCATTGAAAA+AGG | - | chr7.2:3849474-3849493 | None:intergenic | 40.0% | |
| TTGGATTTAACTAGCCATGG+TGG | + | chr7.2:3850456-3850475 | MS.gene29346:CDS | 40.0% | |
| TTTCCGATGAAACCGTTTGA+AGG | - | chr7.2:3849397-3849416 | None:intergenic | 40.0% | |
| ! | AAAAGATTTTCAGACCGCAC+CGG | - | chr7.2:3849637-3849656 | None:intergenic | 40.0% |
| ! | ATGGTCAATGGAGTGCTATT+GGG | + | chr7.2:3849914-3849933 | MS.gene29346:CDS | 40.0% |
| ! | GTCGATGAATTTGTTTGCGA+CGG | - | chr7.2:3849176-3849195 | None:intergenic | 40.0% |
| ! | GTTTTGCTGCTATAACTGCA+GGG | + | chr7.2:3850055-3850074 | MS.gene29346:CDS | 40.0% |
| ! | TATGGTCAATGGAGTGCTAT+TGG | + | chr7.2:3849913-3849932 | MS.gene29346:CDS | 40.0% |
| !! | GGATTGGCTTATGAGTATCA+TGG | + | chr7.2:3850477-3850496 | MS.gene29346:CDS | 40.0% |
| !! | GGTGAAAGTGTTCCAATTAG+AGG | + | chr7.2:3849775-3849794 | MS.gene29346:CDS | 40.0% |
| !! | GTATGTAATGGTTTGCTTGG+TGG | + | chr7.2:3850033-3850052 | MS.gene29346:CDS | 40.0% |
| !! | GTTGCTGCTTGGGTTTTAAT+TGG | + | chr7.2:3850120-3850139 | MS.gene29346:CDS | 40.0% |
| !! | TGAAGGTGTTCCAAAAGCTA+GGG | - | chr7.2:3849380-3849399 | None:intergenic | 40.0% |
| !! | TTGAAGGTGTTCCAAAAGCT+AGG | - | chr7.2:3849381-3849400 | None:intergenic | 40.0% |
| !! | TTGTGGATTTGTTGCTGCTT+GGG | + | chr7.2:3850110-3850129 | MS.gene29346:CDS | 40.0% |
| !! | TTTAACTAGCCATGGTGGAT+TGG | + | chr7.2:3850461-3850480 | MS.gene29346:CDS | 40.0% |
| !! | TTTGTGGATTTGTTGCTGCT+TGG | + | chr7.2:3850109-3850128 | MS.gene29346:CDS | 40.0% |
| !!! | AGATTTTGGCTGTTGTTGCT+TGG | + | chr7.2:3850349-3850368 | MS.gene29346:CDS | 40.0% |
| !!! | CGATTGTTGCTCATTGGTTT+TGG | + | chr7.2:3849590-3849609 | MS.gene29346:CDS | 40.0% |
| !!! | GATTTTGGCTGTTGTTGCTT+GGG | + | chr7.2:3850350-3850369 | MS.gene29346:CDS | 40.0% |
| !!! | GCTTTTGGAACACCTTCAAA+CGG | + | chr7.2:3849382-3849401 | MS.gene29346:CDS | 40.0% |
| !!! | GTTTTTGGCACGAATAGAAC+CGG | - | chr7.2:3849284-3849303 | None:intergenic | 40.0% |
| !!! | TTTGGTTTTGCCCTAGCTTT+TGG | + | chr7.2:3849367-3849386 | MS.gene29346:CDS | 40.0% |
| AAACCTTCCATCTCTACCTC+GGG | - | chr7.2:3850438-3850457 | None:intergenic | 45.0% | |
| AACGTATGCAAACAGGCCAT+TGG | + | chr7.2:3849998-3850017 | MS.gene29346:CDS | 45.0% | |
| ACTCATAAGCCAATCCACCA+TGG | - | chr7.2:3850473-3850492 | None:intergenic | 45.0% | |
| CAAACCTTCCATCTCTACCT+CGG | - | chr7.2:3850439-3850458 | None:intergenic | 45.0% | |
| CAAGGTAAGCTGAGAAGAGA+AGG | - | chr7.2:3849225-3849244 | None:intergenic | 45.0% | |
| CCACAAATAATTGCAGCCCA+TGG | - | chr7.2:3850096-3850115 | None:intergenic | 45.0% | |
| CCTCCCAACAACAATCCATA+AGG | - | chr7.2:3850297-3850316 | None:intergenic | 45.0% | |
| CTTGAAGCTGCACAACTTCA+TGG | + | chr7.2:3850183-3850202 | MS.gene29346:CDS | 45.0% | |
| GACAGCTGTCACAACTACAT+TGG | + | chr7.2:3849939-3849958 | MS.gene29346:CDS | 45.0% | |
| GCAGCTCTCACTACTTTGTT+TGG | + | chr7.2:3849973-3849992 | MS.gene29346:CDS | 45.0% | |
| GGTTCTCCTGATAGACCTTA+TGG | + | chr7.2:3850279-3850298 | MS.gene29346:CDS | 45.0% | |
| GTGTTCTGTTGTGGATCCAT+GGG | + | chr7.2:3850077-3850096 | MS.gene29346:CDS | 45.0% | |
| TCATGGTGGTTGTGGTACTT+GGG | + | chr7.2:3850200-3850219 | MS.gene29346:CDS | 45.0% | |
| TGAAGTTGTGCAGCTTCAAG+AGG | - | chr7.2:3850183-3850202 | None:intergenic | 45.0% | |
| TTCATGGTGGTTGTGGTACT+TGG | + | chr7.2:3850199-3850218 | MS.gene29346:CDS | 45.0% | |
| ! | CCATGGGCTGCAATTATTTG+TGG | + | chr7.2:3850093-3850112 | MS.gene29346:CDS | 45.0% |
| ! | CCTTATGGATTGTTGTTGGG+AGG | + | chr7.2:3850294-3850313 | MS.gene29346:CDS | 45.0% |
| ! | GGTTTTGCTGCTATAACTGC+AGG | + | chr7.2:3850054-3850073 | MS.gene29346:CDS | 45.0% |
| ! | GTAAGTGTTGTCGACAGCAT+AGG | - | chr7.2:3849203-3849222 | None:intergenic | 45.0% |
| ! | TATGGATTGTTGTTGGGAGG+TGG | + | chr7.2:3850297-3850316 | MS.gene29346:CDS | 45.0% |
| ! | TTTTGGTCTGCTGATGGTTG+GGG | + | chr7.2:3849607-3849626 | MS.gene29346:CDS | 45.0% |
| !! | CATTTAGTTGGTGCTGTTGC+TGG | + | chr7.2:3849700-3849719 | MS.gene29346:CDS | 45.0% |
| !! | GGTTTTGCTATGCTTTGTGC+CGG | + | chr7.2:3849262-3849281 | MS.gene29346:CDS | 45.0% |
| !! | GTTTTGGTCTGCTGATGGTT+GGG | + | chr7.2:3849606-3849625 | MS.gene29346:CDS | 45.0% |
| !!! | CATTGGTTTTGGTCTGCTGA+TGG | + | chr7.2:3849601-3849620 | MS.gene29346:CDS | 45.0% |
| !!! | GGTTGGTATGGTTTTAACCC+TGG | + | chr7.2:3849844-3849863 | MS.gene29346:CDS | 45.0% |
| !!! | TGGTGCTGTTGCTGGTTTTT+GGG | + | chr7.2:3849708-3849727 | MS.gene29346:CDS | 45.0% |
| !!! | TTGGTGCTGTTGCTGGTTTT+TGG | + | chr7.2:3849707-3849726 | MS.gene29346:CDS | 45.0% |
| ATGGTGGTTGTGGTACTTGG+GGG | + | chr7.2:3850202-3850221 | MS.gene29346:CDS | 50.0% | |
| CATGGTGGTTGTGGTACTTG+GGG | + | chr7.2:3850201-3850220 | MS.gene29346:CDS | 50.0% | |
| CGAGGTAGAGATGGAAGGTT+TGG | + | chr7.2:3850437-3850456 | MS.gene29346:CDS | 50.0% | |
| GAAGCCGCCACAGATGTATT+CGG | - | chr7.2:3849149-3849168 | None:intergenic | 50.0% | |
| GAAGCTGCACAACTTCATGG+TGG | + | chr7.2:3850186-3850205 | MS.gene29346:CDS | 50.0% | |
| GCACAACTTCATGGTGGTTG+TGG | + | chr7.2:3850192-3850211 | MS.gene29346:CDS | 50.0% | |
| GCTGTCACAACTACATTGGC+TGG | + | chr7.2:3849943-3849962 | MS.gene29346:CDS | 50.0% | |
| GGCTTATGAGTATCATGGGG+AGG | + | chr7.2:3850482-3850501 | MS.gene29346:CDS | 50.0% | |
| GGTGTTCTGTTGTGGATCCA+TGG | + | chr7.2:3850076-3850095 | MS.gene29346:CDS | 50.0% | |
| GTTCTTGATGCCGCAATAGG+TGG | + | chr7.2:3849328-3849347 | MS.gene29346:CDS | 50.0% | |
| TGTGATACCTGCTGCAGCAA+TGG | - | chr7.2:3849494-3849513 | None:intergenic | 50.0% | |
| TTTGCTTAGGTCTTCACCCG+AGG | + | chr7.2:3850419-3850438 | MS.gene29346:CDS | 50.0% | |
| ! | AACTGCAGGGTGTTCTGTTG+TGG | + | chr7.2:3850068-3850087 | MS.gene29346:CDS | 50.0% |
| ! | GTCAATGGAGTGCTATTGGG+AGG | + | chr7.2:3849917-3849936 | MS.gene29346:CDS | 50.0% |
| !! | GGGAGGTGGTGGAAGATTAT+TGG | + | chr7.2:3850311-3850330 | MS.gene29346:CDS | 50.0% |
| !! | GGTTTTGGTCTGCTGATGGT+TGG | + | chr7.2:3849605-3849624 | MS.gene29346:CDS | 50.0% |
| !!! | GGTGCTGTTGCTGGTTTTTG+GGG | + | chr7.2:3849709-3849728 | MS.gene29346:CDS | 50.0% |
| GATGTATTCGGCAGCAGCAG+TGG | - | chr7.2:3849137-3849156 | None:intergenic | 55.0% | |
| GCTGCAGCAGGTATCACAAG+TGG | + | chr7.2:3849496-3849515 | MS.gene29346:CDS | 55.0% | |
| GCTGCCGAATACATCTGTGG+CGG | + | chr7.2:3849142-3849161 | MS.gene29346:CDS | 55.0% | |
| GCTGCTGCCGAATACATCTG+TGG | + | chr7.2:3849139-3849158 | MS.gene29346:CDS | 55.0% | |
| GTCTTCACCCGAGGTAGAGA+TGG | + | chr7.2:3850428-3850447 | MS.gene29346:CDS | 55.0% | |
| TCACCCGAGGTAGAGATGGA+AGG | + | chr7.2:3850432-3850451 | MS.gene29346:CDS | 55.0% | |
| TGCTGATGGTTGGGGTAGTC+CGG | + | chr7.2:3849615-3849634 | MS.gene29346:CDS | 55.0% | |
| ! | GCTTTTGCCATTGCTGCAGC+AGG | + | chr7.2:3849484-3849503 | MS.gene29346:CDS | 55.0% |
| ! | GGATTGTTGTTGGGAGGTGG+TGG | + | chr7.2:3850300-3850319 | MS.gene29346:CDS | 55.0% |
| ATGGTTGGGGTAGTCCGGTG+CGG | + | chr7.2:3849620-3849639 | MS.gene29346:CDS | 60.0% | |
| TCCGACCTCCATGCTCTCCT+CGG | + | chr7.2:3849097-3849116 | MS.gene29346:CDS | 60.0% | |
| ATGGAGGTCGGAGGCGGAAC+AGG | - | chr7.2:3849089-3849108 | None:intergenic | 65.0% | |
| TGGAGTTTGCGCTGCTGCCG+AGG | - | chr7.2:3849117-3849136 | None:intergenic | 65.0% | |
| ! | GAGAGCATGGAGGTCGGAGG+CGG | - | chr7.2:3849095-3849114 | None:intergenic | 65.0% |
| ! | GAGGAGAGCATGGAGGTCGG+AGG | - | chr7.2:3849098-3849117 | None:intergenic | 65.0% |
| ! | GCCGAGGAGAGCATGGAGGT+CGG | - | chr7.2:3849101-3849120 | None:intergenic | 65.0% |
| ! | TGCTGCCGAGGAGAGCATGG+AGG | - | chr7.2:3849105-3849124 | None:intergenic | 65.0% |
| CGCTGCTGCCGAGGAGAGCA+TGG | - | chr7.2:3849108-3849127 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 3849073 | 3850542 | 3849073 | ID=MS.gene29346 |
| chr7.2 | mRNA | 3849073 | 3850542 | 3849073 | ID=MS.gene29346.t1;Parent=MS.gene29346 |
| chr7.2 | exon | 3849073 | 3850542 | 3849073 | ID=MS.gene29346.t1.exon1;Parent=MS.gene29346.t1 |
| chr7.2 | CDS | 3849073 | 3850542 | 3849073 | ID=cds.MS.gene29346.t1;Parent=MS.gene29346.t1 |
| Gene Sequence |
| Protein sequence |
