Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29360.t1 | XP_003601259.1 | 99.1 | 219 | 2 | 0 | 2 | 220 | 558 | 776 | 2.30E-115 | 424.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29360.t1 | Q8L5Y9 | 90.4 | 218 | 21 | 0 | 3 | 220 | 565 | 782 | 2.6e-107 | 389.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29360.t1 | G7J5F4 | 99.1 | 219 | 2 | 0 | 2 | 220 | 558 | 776 | 1.7e-115 | 424.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene29360 | 0.835806 | 1.35E-56 | -1.69E-46 |
| MS.gene052389 | MS.gene29360 | 0.816293 | 5.96E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene29360 | 0.831761 | 1.39E-55 | -1.69E-46 |
| MS.gene054826 | MS.gene29360 | 0.863605 | 2.21E-64 | -1.69E-46 |
| MS.gene054930 | MS.gene29360 | 0.819972 | 8.77E-53 | -1.69E-46 |
| MS.gene05595 | MS.gene29360 | 0.804066 | 2.58E-49 | -1.69E-46 |
| MS.gene057929 | MS.gene29360 | 0.806365 | 8.52E-50 | -1.69E-46 |
| MS.gene058650 | MS.gene29360 | 0.814592 | 1.42E-51 | -1.69E-46 |
| MS.gene058651 | MS.gene29360 | 0.833472 | 5.23E-56 | -1.69E-46 |
| MS.gene05872 | MS.gene29360 | 0.833399 | 5.45E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29360.t1 | MTR_3g077740 | 99.087 | 219 | 2 | 0 | 2 | 220 | 558 | 776 | 4.27e-151 | 442 |
| MS.gene29360.t1 | MTR_1g076720 | 36.916 | 214 | 126 | 4 | 6 | 217 | 64 | 270 | 4.21e-41 | 143 |
| MS.gene29360.t1 | MTR_6g060550 | 35.514 | 214 | 129 | 4 | 6 | 217 | 62 | 268 | 4.78e-40 | 140 |
| MS.gene29360.t1 | MTR_6g060550 | 35.514 | 214 | 129 | 4 | 6 | 217 | 62 | 268 | 7.80e-40 | 140 |
| MS.gene29360.t1 | MTR_6g060550 | 35.981 | 214 | 128 | 4 | 6 | 217 | 103 | 309 | 1.17e-39 | 140 |
| MS.gene29360.t1 | MTR_1g076730 | 36.279 | 215 | 129 | 3 | 5 | 217 | 216 | 424 | 1.34e-37 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29360.t1 | AT4G32180 | 90.367 | 218 | 21 | 0 | 3 | 220 | 565 | 782 | 3.45e-137 | 403 |
| MS.gene29360.t1 | AT4G32180 | 90.367 | 218 | 21 | 0 | 3 | 220 | 565 | 782 | 3.45e-137 | 403 |
| MS.gene29360.t1 | AT4G32180 | 90.367 | 218 | 21 | 0 | 3 | 220 | 565 | 782 | 7.77e-136 | 403 |
| MS.gene29360.t1 | AT2G17320 | 38.785 | 214 | 122 | 4 | 6 | 217 | 56 | 262 | 7.59e-44 | 150 |
| MS.gene29360.t1 | AT2G17320 | 38.785 | 214 | 122 | 4 | 6 | 217 | 56 | 262 | 8.53e-44 | 150 |
| MS.gene29360.t1 | AT4G35360 | 38.785 | 214 | 122 | 4 | 6 | 217 | 62 | 268 | 5.78e-43 | 148 |
| MS.gene29360.t1 | AT4G35360 | 38.785 | 214 | 122 | 4 | 6 | 217 | 62 | 268 | 5.78e-43 | 148 |
| MS.gene29360.t1 | AT2G17340 | 37.981 | 208 | 120 | 4 | 12 | 217 | 68 | 268 | 1.44e-41 | 145 |
| MS.gene29360.t1 | AT4G35360 | 41.765 | 170 | 91 | 3 | 49 | 217 | 9 | 171 | 1.01e-39 | 137 |
Find 60 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTGTTTGTTGATAATTC+AGG | 0.264371 | 3.2:+68717131 | MS.gene29360:CDS |
| TCAGGTGCTGACATTGTTCT+AGG | 0.266086 | 3.2:+68717149 | MS.gene29360:CDS |
| CCTCTGCTTTATACTTCTAT+AGG | 0.299214 | 3.2:-68716108 | None:intergenic |
| AAAAGCATCACCCCTTCTTT+TGG | 0.318392 | 3.2:-68715242 | None:intergenic |
| GTTAGGCTTGGCCAATCTAT+TGG | 0.318807 | 3.2:+68716043 | MS.gene29360:CDS |
| CTCTTCAAAGAGAGAATGTT+AGG | 0.349289 | 3.2:+68717071 | MS.gene29360:CDS |
| GCAGCCTCAGCTACAATATC+AGG | 0.349938 | 3.2:-68717862 | None:intergenic |
| TTCCCTCATTTCCAATAGAT+TGG | 0.358243 | 3.2:-68716054 | None:intergenic |
| TTCTATAGGCATCAACAAAC+TGG | 0.374707 | 3.2:-68716094 | None:intergenic |
| CCTTCTGCATACGGCAAGTT+AGG | 0.380263 | 3.2:+68716026 | MS.gene29360:CDS |
| GTTTGTAGAACTTGATAGTA+TGG | 0.382267 | 3.2:+68716272 | MS.gene29360:CDS |
| TGTTCTAGGGATGCTTCCTC+TGG | 0.402559 | 3.2:+68717163 | MS.gene29360:CDS |
| ATCATCAGTTCCACCTTCAC+TGG | 0.473649 | 3.2:-68715218 | None:intergenic |
| AACAGTAAAGCTCTTCTATG+AGG | 0.474599 | 3.2:-68717116 | None:intergenic |
| AGACTGCTTACTCTAATTGA+AGG | 0.478438 | 3.2:+68716813 | MS.gene29360:CDS |
| TAGGGATGCTTCCTCTGGCT+AGG | 0.486511 | 3.2:+68717168 | MS.gene29360:CDS |
| AATGAGGGAAGAGTGCTTGA+GGG | 0.489682 | 3.2:+68716067 | MS.gene29360:CDS |
| TAAAATGCGCAGACCTTGGC+GGG | 0.497032 | 3.2:+68716932 | MS.gene29360:CDS |
| TGCATACGGCAAGTTAGGCT+TGG | 0.498634 | 3.2:+68716031 | MS.gene29360:CDS |
| TGTGTTGATCTCTATCATAA+AGG | 0.501529 | 3.2:+68716876 | MS.gene29360:CDS |
| AAAGAGAGAATGTTAGGGAC+CGG | 0.506027 | 3.2:+68717077 | MS.gene29360:CDS |
| AGGGATGCTTCCTCTGGCTA+GGG | 0.513859 | 3.2:+68717169 | MS.gene29360:CDS |
| GCAATAAAATGCGCAGACCT+TGG | 0.515821 | 3.2:+68716928 | MS.gene29360:CDS |
| GAACTGATGATGCCAAAAGA+AGG | 0.520146 | 3.2:+68715230 | MS.gene29360:CDS |
| TGGCCAATCTATTGGAAATG+AGG | 0.520415 | 3.2:+68716051 | MS.gene29360:CDS |
| ATGGAGGAGCCTTCTGCATA+CGG | 0.524279 | 3.2:+68716017 | MS.gene29360:CDS |
| GTCATTATTACCTTGACAAG+TGG | 0.524525 | 3.2:-68715282 | None:intergenic |
| GGCCAATCTATTGGAAATGA+GGG | 0.531273 | 3.2:+68716052 | MS.gene29360:CDS |
| ACATCAAATGAATAGGTTGA+TGG | 0.531786 | 3.2:+68715998 | MS.gene29360:intron |
| ACAGTAAAGCTCTTCTATGA+GGG | 0.532783 | 3.2:-68717115 | None:intergenic |
| TCAAGTTCTACAAACAAGTC+AGG | 0.533102 | 3.2:-68716264 | None:intergenic |
| TGTGGATAATAGGGAAAATG+AGG | 0.541454 | 3.2:+68716224 | MS.gene29360:intron |
| TATTGTAGCTGAGGCTGCCA+AGG | 0.545712 | 3.2:+68717867 | MS.gene29360:CDS |
| ATAAAATGCGCAGACCTTGG+CGG | 0.549032 | 3.2:+68716931 | MS.gene29360:CDS |
| AAATGAGGGAAGAGTGCTTG+AGG | 0.549228 | 3.2:+68716066 | MS.gene29360:CDS |
| AAGAGAGAATGTTAGGGACC+GGG | 0.558973 | 3.2:+68717078 | MS.gene29360:CDS |
| TCATTATTACCTTGACAAGT+GGG | 0.560771 | 3.2:-68715281 | None:intergenic |
| CAGGTGCTGACATTGTTCTA+GGG | 0.564205 | 3.2:+68717150 | MS.gene29360:CDS |
| GCTTCCTGATATTGTAGCTG+AGG | 0.576697 | 3.2:+68717858 | MS.gene29360:CDS |
| GCAGTCACATCATTCAAAGC+AGG | 0.576932 | 3.2:-68717829 | None:intergenic |
| CAGGCTGTTGCCAGTGAAGG+TGG | 0.580036 | 3.2:+68715208 | MS.gene29360:CDS |
| CCTAACTTGCCGTATGCAGA+AGG | 0.581095 | 3.2:-68716026 | None:intergenic |
| AGAACTTGATAGTATGGATG+AGG | 0.590772 | 3.2:+68716278 | MS.gene29360:CDS |
| TTAATTCCACCTACCCGCCA+AGG | 0.591741 | 3.2:-68716945 | None:intergenic |
| TCTTCAAAGAGAGAATGTTA+GGG | 0.595349 | 3.2:+68717072 | MS.gene29360:CDS |
| ATAGAGATCAACACATGCAC+GGG | 0.596357 | 3.2:-68716868 | None:intergenic |
| GCTAGGGAGCTCCTCCGTCG+TGG | 0.596909 | 3.2:+68717185 | MS.gene29360:CDS |
| GATAGAGATCAACACATGCA+CGG | 0.617200 | 3.2:-68716869 | None:intergenic |
| TTTGAATGATGTGACTGCAA+TGG | 0.622671 | 3.2:+68717834 | MS.gene29360:CDS |
| AACTGATGATGCCAAAAGAA+GGG | 0.624687 | 3.2:+68715231 | MS.gene29360:CDS |
| AGAGAGAATGTTAGGGACCG+GGG | 0.628373 | 3.2:+68717079 | MS.gene29360:CDS |
| TCAAATGAATAGGTTGATGG+AGG | 0.647737 | 3.2:+68716001 | MS.gene29360:intron |
| CCTATAGAAGTATAAAGCAG+AGG | 0.649593 | 3.2:+68716108 | MS.gene29360:CDS |
| CAGTAAAGCTCTTCTATGAG+GGG | 0.649740 | 3.2:-68717114 | None:intergenic |
| ATGCAGGCTGTTGCCAGTGA+AGG | 0.652213 | 3.2:+68715205 | MS.gene29360:CDS |
| CGGAGGAGCTCCCTAGCCAG+AGG | 0.661956 | 3.2:-68717179 | None:intergenic |
| AGTAAAGCTCTTCTATGAGG+GGG | 0.666765 | 3.2:-68717113 | None:intergenic |
| TCACTTCAGTTCCACGACGG+AGG | 0.674137 | 3.2:-68717196 | None:intergenic |
| ACTGATGATGCCAAAAGAAG+GGG | 0.688906 | 3.2:+68715232 | MS.gene29360:CDS |
| AACTCACTTCAGTTCCACGA+CGG | 0.704303 | 3.2:-68717199 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCATTTTTTTAAGATT+TGG | + | chr3.2:68716482-68716501 | MS.gene29360:intron | 10.0% |
| !!! | AATTTAGTAATTTTAATGAA+TGG | + | chr3.2:68717327-68717346 | MS.gene29360:intron | 10.0% |
| !!! | AATTTATATTTTTATCCTGT+GGG | - | chr3.2:68715709-68715728 | None:intergenic | 15.0% |
| !!! | ATTTTCTAGTTTCTATATTT+TGG | + | chr3.2:68717223-68717242 | MS.gene29360:intron | 15.0% |
| !!! | TAATAAGTTTTCAAAAATCA+TGG | + | chr3.2:68715940-68715959 | MS.gene29360:intron | 15.0% |
| !! | AAAAATATAAATTGCTCAGA+TGG | + | chr3.2:68715716-68715735 | MS.gene29360:intron | 20.0% |
| !! | ATAGTATAAACAAGTGATAA+TGG | - | chr3.2:68716719-68716738 | None:intergenic | 20.0% |
| !! | TAGTATAAACAAGTGATAAT+GGG | - | chr3.2:68716718-68716737 | None:intergenic | 20.0% |
| !! | TAGTATAATTATTGAAGCAT+GGG | + | chr3.2:68715328-68715347 | MS.gene29360:intron | 20.0% |
| !! | TCAAAAAAATCCAAAACAAA+CGG | + | chr3.2:68716691-68716710 | MS.gene29360:intron | 20.0% |
| !! | TGTACAGATTTAAATAGAAA+AGG | - | chr3.2:68716142-68716161 | None:intergenic | 20.0% |
| !! | TTAGTATAATTATTGAAGCA+TGG | + | chr3.2:68715327-68715346 | MS.gene29360:intron | 20.0% |
| !! | TTCTAGCATAAAAAGATTTA+AGG | + | chr3.2:68715634-68715653 | MS.gene29360:intron | 20.0% |
| !!! | AGTAATTTTAATGAATGGAT+TGG | + | chr3.2:68717332-68717351 | MS.gene29360:intron | 20.0% |
| !!! | ATCTTTTTATGCTAGAAATT+TGG | - | chr3.2:68715631-68715650 | None:intergenic | 20.0% |
| !!! | ATTTTTCCATGTGTAATATT+GGG | + | chr3.2:68716359-68716378 | MS.gene29360:intron | 20.0% |
| !!! | CAATTTATATTTTTATCCTG+TGG | - | chr3.2:68715710-68715729 | None:intergenic | 20.0% |
| !!! | GTTTAGAAAGAAATAGATTT+TGG | + | chr3.2:68716529-68716548 | MS.gene29360:intron | 20.0% |
| !!! | TCTATTTCTTTCTAAACATA+AGG | - | chr3.2:68716526-68716545 | None:intergenic | 20.0% |
| !!! | TTATTTGTATGATTTGTATG+TGG | + | chr3.2:68716206-68716225 | MS.gene29360:intron | 20.0% |
| !!! | TTTTTATACCAAGATAACAA+TGG | + | chr3.2:68717776-68717795 | MS.gene29360:intron | 20.0% |
| ! | AGAGGATTGTAGTATTAATA+AGG | - | chr3.2:68716308-68716327 | None:intergenic | 25.0% |
| ! | ATATCGTATCCACAAAAAAT+AGG | - | chr3.2:68715537-68715556 | None:intergenic | 25.0% |
| ! | ATTTAACTGAAGTATAACAC+AGG | - | chr3.2:68717535-68717554 | None:intergenic | 25.0% |
| ! | ATTTCTACCATTGATATTTG+CGG | + | chr3.2:68717710-68717729 | MS.gene29360:intron | 25.0% |
| ! | CAAGTAATATTATGATCGAT+TGG | + | chr3.2:68717448-68717467 | MS.gene29360:intron | 25.0% |
| ! | TAAATCTCCAAAGTCAAATA+TGG | + | chr3.2:68717379-68717398 | MS.gene29360:intron | 25.0% |
| ! | TATTCAACTATCAACTATGA+TGG | - | chr3.2:68717005-68717024 | None:intergenic | 25.0% |
| !! | ATGATTTGTATGTGGATAAT+AGG | + | chr3.2:68716214-68716233 | MS.gene29360:intron | 25.0% |
| !! | CATTTTTCCATGTGTAATAT+TGG | + | chr3.2:68716358-68716377 | MS.gene29360:intron | 25.0% |
| !! | TGAAATAGCTTTTCATTTTG+AGG | + | chr3.2:68716562-68716581 | MS.gene29360:intron | 25.0% |
| !! | TGATTTGTATGTGGATAATA+GGG | + | chr3.2:68716215-68716234 | MS.gene29360:intron | 25.0% |
| !!! | TTACTGTTTGTTGATAATTC+AGG | + | chr3.2:68717131-68717150 | MS.gene29360:CDS | 25.0% |
| AAAAATAGGATCATGGTGTT+TGG | - | chr3.2:68715523-68715542 | None:intergenic | 30.0% | |
| AAGATTTATAGTGCGTTTCA+TGG | + | chr3.2:68715443-68715462 | MS.gene29360:intron | 30.0% | |
| ACTTCATAATCAACCCAATT+TGG | - | chr3.2:68715786-68715805 | None:intergenic | 30.0% | |
| AGATTTATTAGAAGCTAGAG+CGG | - | chr3.2:68716751-68716770 | None:intergenic | 30.0% | |
| ATCCACAAAAAATAGGATCA+TGG | - | chr3.2:68715530-68715549 | None:intergenic | 30.0% | |
| ATCTGTTATCTTTGATCAAC+TGG | + | chr3.2:68715405-68715424 | MS.gene29360:intron | 30.0% | |
| GTCACAAAAACGAACAAATT+AGG | - | chr3.2:68715575-68715594 | None:intergenic | 30.0% | |
| TATCACTCTAGTTATCTAGA+TGG | + | chr3.2:68715351-68715370 | MS.gene29360:intron | 30.0% | |
| TCATTATTACCTTGACAAGT+GGG | - | chr3.2:68715284-68715303 | None:intergenic | 30.0% | |
| TCTTCAAAGAGAGAATGTTA+GGG | + | chr3.2:68717072-68717091 | MS.gene29360:CDS | 30.0% | |
| TTATACTAAGCTATCAAAGC+AGG | - | chr3.2:68715316-68715335 | None:intergenic | 30.0% | |
| TTTCTACCATTGATATTTGC+GGG | + | chr3.2:68717711-68717730 | MS.gene29360:intron | 30.0% | |
| ! | ACATCAAATGAATAGGTTGA+TGG | + | chr3.2:68715998-68716017 | MS.gene29360:intron | 30.0% |
| ! | GTTTGTAGAACTTGATAGTA+TGG | + | chr3.2:68716272-68716291 | MS.gene29360:CDS | 30.0% |
| ! | TGTGTTGATCTCTATCATAA+AGG | + | chr3.2:68716876-68716895 | MS.gene29360:CDS | 30.0% |
| AAAGAACCCGCAAATATCAA+TGG | - | chr3.2:68717720-68717739 | None:intergenic | 35.0% | |
| AACAACATGCATTTCACAAG+AGG | - | chr3.2:68715834-68715853 | None:intergenic | 35.0% | |
| AACAGTAAAGCTCTTCTATG+AGG | - | chr3.2:68717119-68717138 | None:intergenic | 35.0% | |
| AAGTATTCCAGCTCCAAATT+GGG | + | chr3.2:68715770-68715789 | MS.gene29360:intron | 35.0% | |
| ACAGTAAAGCTCTTCTATGA+GGG | - | chr3.2:68717118-68717137 | None:intergenic | 35.0% | |
| ACCAAAGAGTCTCATATTAC+TGG | - | chr3.2:68716782-68716801 | None:intergenic | 35.0% | |
| AGACTGCTTACTCTAATTGA+AGG | + | chr3.2:68716813-68716832 | MS.gene29360:CDS | 35.0% | |
| ATGAAGCTCAAATCTCAGAA+AGG | - | chr3.2:68717298-68717317 | None:intergenic | 35.0% | |
| ATTGATATTTGCGGGTTCTT+TGG | + | chr3.2:68717719-68717738 | MS.gene29360:intron | 35.0% | |
| CACTTGCACATCAAATGAAT+AGG | + | chr3.2:68715991-68716010 | MS.gene29360:intron | 35.0% | |
| CCTCTGCTTTATACTTCTAT+AGG | - | chr3.2:68716111-68716130 | None:intergenic | 35.0% | |
| CTCTTCAAAGAGAGAATGTT+AGG | + | chr3.2:68717071-68717090 | MS.gene29360:CDS | 35.0% | |
| GAAACTTGTGCAACAACAAA+TGG | + | chr3.2:68715373-68715392 | MS.gene29360:intron | 35.0% | |
| GTCATTATTACCTTGACAAG+TGG | - | chr3.2:68715285-68715304 | None:intergenic | 35.0% | |
| TAAGTATTCCAGCTCCAAAT+TGG | + | chr3.2:68715769-68715788 | MS.gene29360:intron | 35.0% | |
| TACTGTAACAACAAACTAGC+TGG | - | chr3.2:68717563-68717582 | None:intergenic | 35.0% | |
| TCAAGTTCTACAAACAAGTC+AGG | - | chr3.2:68716267-68716286 | None:intergenic | 35.0% | |
| TGTGGATAATAGGGAAAATG+AGG | + | chr3.2:68716224-68716243 | MS.gene29360:intron | 35.0% | |
| TTCCCTCATTTCCAATAGAT+TGG | - | chr3.2:68716057-68716076 | None:intergenic | 35.0% | |
| TTCTATAGGCATCAACAAAC+TGG | - | chr3.2:68716097-68716116 | None:intergenic | 35.0% | |
| TTGATGTGCAAGTGCATTAA+TGG | - | chr3.2:68715985-68716004 | None:intergenic | 35.0% | |
| TTTGAATGATGTGACTGCAA+TGG | + | chr3.2:68717834-68717853 | MS.gene29360:CDS | 35.0% | |
| ! | AACTGATGATGCCAAAAGAA+GGG | + | chr3.2:68715231-68715250 | MS.gene29360:CDS | 35.0% |
| ! | AGAACTTGATAGTATGGATG+AGG | + | chr3.2:68716278-68716297 | MS.gene29360:CDS | 35.0% |
| ! | ATCCTCTCAATTTTCCCTAT+AGG | + | chr3.2:68716321-68716340 | MS.gene29360:intron | 35.0% |
| ! | CCTATAGAAGTATAAAGCAG+AGG | + | chr3.2:68716108-68716127 | MS.gene29360:CDS | 35.0% |
| ! | GCTAGAAATTTGGTTGACTT+TGG | - | chr3.2:68715621-68715640 | None:intergenic | 35.0% |
| ! | GTTCAGAGTTTCAATCGTTT+TGG | + | chr3.2:68715874-68715893 | MS.gene29360:intron | 35.0% |
| ! | TCCTCTCAATTTTCCCTATA+GGG | + | chr3.2:68716322-68716341 | MS.gene29360:intron | 35.0% |
| ! | TGGCTACATTCTAGTTAAAC+TGG | + | chr3.2:68717352-68717371 | MS.gene29360:intron | 35.0% |
| ! | TTCCTCTTTCACAGTTTTAC+TGG | + | chr3.2:68715670-68715689 | MS.gene29360:intron | 35.0% |
| !! | GTTCGTTTTTGTGACAACTT+GGG | + | chr3.2:68715580-68715599 | MS.gene29360:intron | 35.0% |
| !! | TCAAATGAATAGGTTGATGG+AGG | + | chr3.2:68716001-68716020 | MS.gene29360:intron | 35.0% |
| !! | TGTTCGTTTTTGTGACAACT+TGG | + | chr3.2:68715579-68715598 | MS.gene29360:intron | 35.0% |
| !!! | CACCATGATCCTATTTTTTG+TGG | + | chr3.2:68715525-68715544 | MS.gene29360:intron | 35.0% |
| AAAAAAACTGCGCCAAAGAG+AGG | - | chr3.2:68717421-68717440 | None:intergenic | 40.0% | |
| AAAAAACTGCGCCAAAGAGA+GGG | - | chr3.2:68717420-68717439 | None:intergenic | 40.0% | |
| AAACTGTGAAAGAGGAAGAG+TGG | - | chr3.2:68715667-68715686 | None:intergenic | 40.0% | |
| AAAGAGAGAATGTTAGGGAC+CGG | + | chr3.2:68717077-68717096 | MS.gene29360:CDS | 40.0% | |
| AACGCACCCAATATTACACA+TGG | - | chr3.2:68716368-68716387 | None:intergenic | 40.0% | |
| ACCAAGATAACAATGGATGC+AGG | + | chr3.2:68717783-68717802 | MS.gene29360:intron | 40.0% | |
| ACCTGCATCCATTGTTATCT+TGG | - | chr3.2:68717787-68717806 | None:intergenic | 40.0% | |
| AGCCAGTAAAACTGTGAAAG+AGG | - | chr3.2:68715675-68715694 | None:intergenic | 40.0% | |
| AGTAAAGCTCTTCTATGAGG+GGG | - | chr3.2:68717116-68717135 | None:intergenic | 40.0% | |
| ATAGAGATCAACACATGCAC+GGG | - | chr3.2:68716871-68716890 | None:intergenic | 40.0% | |
| ATATGAGACTCTTTGGTTGC+AGG | + | chr3.2:68716785-68716804 | MS.gene29360:intron | 40.0% | |
| ATGCTCAAATTCCCTCTCTT+TGG | + | chr3.2:68717406-68717425 | MS.gene29360:intron | 40.0% | |
| CAGTAAAGCTCTTCTATGAG+GGG | - | chr3.2:68717117-68717136 | None:intergenic | 40.0% | |
| CTTGTTAAGCTTGCATAGTC+AGG | + | chr3.2:68717607-68717626 | MS.gene29360:intron | 40.0% | |
| GAGAGGAATTTGAGAAAGAC+AGG | - | chr3.2:68717683-68717702 | None:intergenic | 40.0% | |
| GATAGAGATCAACACATGCA+CGG | - | chr3.2:68716872-68716891 | None:intergenic | 40.0% | |
| GCCAGTAATATGAGACTCTT+TGG | + | chr3.2:68716778-68716797 | MS.gene29360:intron | 40.0% | |
| GGAGCTGGAATACTTATTTC+TGG | - | chr3.2:68715765-68715784 | None:intergenic | 40.0% | |
| GGCCAATCTATTGGAAATGA+GGG | + | chr3.2:68716052-68716071 | MS.gene29360:CDS | 40.0% | |
| TGGCCAATCTATTGGAAATG+AGG | + | chr3.2:68716051-68716070 | MS.gene29360:CDS | 40.0% | |
| ! | ACTGATGATGCCAAAAGAAG+GGG | + | chr3.2:68715232-68715251 | MS.gene29360:CDS | 40.0% |
| ! | CATGCAGCCATATTTGACTT+TGG | - | chr3.2:68717389-68717408 | None:intergenic | 40.0% |
| ! | CCTCTCAATTTTCCCTATAG+GGG | + | chr3.2:68716323-68716342 | MS.gene29360:intron | 40.0% |
| ! | CTCTCAATTTTCCCTATAGG+GGG | + | chr3.2:68716324-68716343 | MS.gene29360:intron | 40.0% |
| ! | GAACTGATGATGCCAAAAGA+AGG | + | chr3.2:68715230-68715249 | MS.gene29360:CDS | 40.0% |
| ! | TAATCAACCCAATTTGGAGC+TGG | - | chr3.2:68715780-68715799 | None:intergenic | 40.0% |
| ! | TCGCTGCAAACATTTTTGAC+TGG | + | chr3.2:68716841-68716860 | MS.gene29360:CDS | 40.0% |
| ! | TCTCAATTTTCCCTATAGGG+GGG | + | chr3.2:68716325-68716344 | MS.gene29360:intron | 40.0% |
| ! | TCTTTCACAGTTTTACTGGC+TGG | + | chr3.2:68715674-68715693 | MS.gene29360:intron | 40.0% |
| !! | AATATTGACTCCCCCCTATA+GGG | - | chr3.2:68716338-68716357 | None:intergenic | 40.0% |
| !! | CGCTGCAAACATTTTTGACT+GGG | + | chr3.2:68716842-68716861 | MS.gene29360:CDS | 40.0% |
| !! | GCTGCAAACATTTTTGACTG+GGG | + | chr3.2:68716843-68716862 | MS.gene29360:CDS | 40.0% |
| !!! | AAAAGCATCACCCCTTCTTT+TGG | - | chr3.2:68715245-68715264 | None:intergenic | 40.0% |
| !!! | GATAATGGGTCCGTTTGTTT+TGG | - | chr3.2:68716704-68716723 | None:intergenic | 40.0% |
| AACTCACTTCAGTTCCACGA+CGG | - | chr3.2:68717202-68717221 | None:intergenic | 45.0% | |
| AAGAGAGAATGTTAGGGACC+GGG | + | chr3.2:68717078-68717097 | MS.gene29360:CDS | 45.0% | |
| ATAAAATGCGCAGACCTTGG+CGG | + | chr3.2:68716931-68716950 | MS.gene29360:CDS | 45.0% | |
| ATCATCAGTTCCACCTTCAC+TGG | - | chr3.2:68715221-68715240 | None:intergenic | 45.0% | |
| CCCCTATAGGGAAAATTGAG+AGG | - | chr3.2:68716326-68716345 | None:intergenic | 45.0% | |
| GCAATAAAATGCGCAGACCT+TGG | + | chr3.2:68716928-68716947 | MS.gene29360:CDS | 45.0% | |
| GCAGTCACATCATTCAAAGC+AGG | - | chr3.2:68717832-68717851 | None:intergenic | 45.0% | |
| GCTTCCTGATATTGTAGCTG+AGG | + | chr3.2:68717858-68717877 | MS.gene29360:CDS | 45.0% | |
| GTTAGGCTTGGCCAATCTAT+TGG | + | chr3.2:68716043-68716062 | MS.gene29360:CDS | 45.0% | |
| TGGCTGCTATACAGTCACTT+TGG | + | chr3.2:68717739-68717758 | MS.gene29360:intron | 45.0% | |
| TGGTAGAAATTCGTGCAGAG+AGG | - | chr3.2:68717700-68717719 | None:intergenic | 45.0% | |
| !! | AAATGAGGGAAGAGTGCTTG+AGG | + | chr3.2:68716066-68716085 | MS.gene29360:CDS | 45.0% |
| !! | AATGAGGGAAGAGTGCTTGA+GGG | + | chr3.2:68716067-68716086 | MS.gene29360:CDS | 45.0% |
| !! | CAGGTGCTGACATTGTTCTA+GGG | + | chr3.2:68717150-68717169 | MS.gene29360:CDS | 45.0% |
| !! | GAATATTGACTCCCCCCTAT+AGG | - | chr3.2:68716339-68716358 | None:intergenic | 45.0% |
| !! | TCAGGTGCTGACATTGTTCT+AGG | + | chr3.2:68717149-68717168 | MS.gene29360:CDS | 45.0% |
| !! | AAAAAAAAAAAAAATTATGT+TGG | - | chr3.2:68717028-68717047 | None:intergenic | 5.0% |
| !!! | AAATTATTTTTTTAACAAAA+TGG | + | chr3.2:68716589-68716608 | MS.gene29360:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTAATCT+AGG | + | chr3.2:68717034-68717053 | MS.gene29360:intron | 5.0% |
| AGAGAGAATGTTAGGGACCG+GGG | + | chr3.2:68717079-68717098 | MS.gene29360:CDS | 50.0% | |
| ATGGAGGAGCCTTCTGCATA+CGG | + | chr3.2:68716017-68716036 | MS.gene29360:CDS | 50.0% | |
| CCTTCTGCATACGGCAAGTT+AGG | + | chr3.2:68716026-68716045 | MS.gene29360:CDS | 50.0% | |
| GCAGCCTCAGCTACAATATC+AGG | - | chr3.2:68717865-68717884 | None:intergenic | 50.0% | |
| GCAGTGCAGTGTGTAATTGC+AGG | - | chr3.2:68717642-68717661 | None:intergenic | 50.0% | |
| TAAAATGCGCAGACCTTGGC+GGG | + | chr3.2:68716932-68716951 | MS.gene29360:CDS | 50.0% | |
| TGCATACGGCAAGTTAGGCT+TGG | + | chr3.2:68716031-68716050 | MS.gene29360:CDS | 50.0% | |
| TTAATTCCACCTACCCGCCA+AGG | - | chr3.2:68716948-68716967 | None:intergenic | 50.0% | |
| ! | CCTAACTTGCCGTATGCAGA+AGG | - | chr3.2:68716029-68716048 | None:intergenic | 50.0% |
| ! | CGTTTTCTGCCCACTTGTCA+AGG | + | chr3.2:68715272-68715291 | MS.gene29360:CDS | 50.0% |
| !! | TGTTCTAGGGATGCTTCCTC+TGG | + | chr3.2:68717163-68717182 | MS.gene29360:CDS | 50.0% |
| AGGGATGCTTCCTCTGGCTA+GGG | + | chr3.2:68717169-68717188 | MS.gene29360:CDS | 55.0% | |
| ATGCAGGCTGTTGCCAGTGA+AGG | + | chr3.2:68715205-68715224 | MS.gene29360:CDS | 55.0% | |
| GGCTGGATCATGAATCCCAC+AGG | + | chr3.2:68715691-68715710 | MS.gene29360:intron | 55.0% | |
| TAGGGATGCTTCCTCTGGCT+AGG | + | chr3.2:68717168-68717187 | MS.gene29360:CDS | 55.0% | |
| TCACTTCAGTTCCACGACGG+AGG | - | chr3.2:68717199-68717218 | None:intergenic | 55.0% | |
| AGGGGGCTTCTTCTTGTCCC+CGG | - | chr3.2:68717099-68717118 | None:intergenic | 60.0% | |
| CAGGCTGTTGCCAGTGAAGG+TGG | + | chr3.2:68715208-68715227 | MS.gene29360:CDS | 60.0% | |
| ! | ATGCGCAGACCTTGGCGGGT+AGG | + | chr3.2:68716936-68716955 | MS.gene29360:intron | 65.0% |
| CGGAGGAGCTCCCTAGCCAG+AGG | - | chr3.2:68717182-68717201 | None:intergenic | 70.0% | |
| GCTAGGGAGCTCCTCCGTCG+TGG | + | chr3.2:68717185-68717204 | MS.gene29360:CDS | 70.0% | |
| ! | CGCAGACCTTGGCGGGTAGG+TGG | + | chr3.2:68716939-68716958 | MS.gene29360:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 68715205 | 68717888 | 68715205 | ID=MS.gene29360 |
| chr3.2 | mRNA | 68715205 | 68717888 | 68715205 | ID=MS.gene29360.t1;Parent=MS.gene29360 |
| chr3.2 | exon | 68715205 | 68715293 | 68715205 | ID=MS.gene29360.t1.exon1;Parent=MS.gene29360.t1 |
| chr3.2 | CDS | 68715205 | 68715293 | 68715205 | ID=cds.MS.gene29360.t1;Parent=MS.gene29360.t1 |
| chr3.2 | exon | 68716013 | 68716129 | 68716013 | ID=MS.gene29360.t1.exon2;Parent=MS.gene29360.t1 |
| chr3.2 | CDS | 68716013 | 68716129 | 68716013 | ID=cds.MS.gene29360.t1;Parent=MS.gene29360.t1 |
| chr3.2 | exon | 68716236 | 68716299 | 68716236 | ID=MS.gene29360.t1.exon3;Parent=MS.gene29360.t1 |
| chr3.2 | CDS | 68716236 | 68716299 | 68716236 | ID=cds.MS.gene29360.t1;Parent=MS.gene29360.t1 |
| chr3.2 | exon | 68716807 | 68716953 | 68716807 | ID=MS.gene29360.t1.exon4;Parent=MS.gene29360.t1 |
| chr3.2 | CDS | 68716807 | 68716953 | 68716807 | ID=cds.MS.gene29360.t1;Parent=MS.gene29360.t1 |
| chr3.2 | exon | 68717056 | 68717214 | 68717056 | ID=MS.gene29360.t1.exon5;Parent=MS.gene29360.t1 |
| chr3.2 | CDS | 68717056 | 68717214 | 68717056 | ID=cds.MS.gene29360.t1;Parent=MS.gene29360.t1 |
| chr3.2 | exon | 68717805 | 68717888 | 68717805 | ID=MS.gene29360.t1.exon6;Parent=MS.gene29360.t1 |
| chr3.2 | CDS | 68717805 | 68717888 | 68717805 | ID=cds.MS.gene29360.t1;Parent=MS.gene29360.t1 |
| Gene Sequence |
| Protein sequence |
