Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29468.t1 | XP_003616384.1 | 92.2 | 218 | 10 | 2 | 1 | 218 | 1 | 211 | 1.00E-102 | 382.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29468.t1 | Q6NLC8 | 54.7 | 190 | 77 | 6 | 1 | 183 | 1 | 188 | 9.7e-46 | 184.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29468.t1 | G7KBN9 | 92.2 | 218 | 10 | 2 | 1 | 218 | 1 | 211 | 7.3e-103 | 382.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049264 | MS.gene29468 | 0.827274 | 1.71E-54 | -1.69E-46 |
| MS.gene061188 | MS.gene29468 | 0.804985 | 1.66E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29468 | MS.gene59144 | PPI |
| MS.gene29468 | MS.gene83133 | PPI |
| MS.gene29468 | MS.gene026608 | PPI |
| MS.gene29468 | MS.gene006970 | PPI |
| MS.gene29468 | MS.gene62991 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29468.t1 | MTR_5g079610 | 92.202 | 218 | 10 | 2 | 1 | 218 | 1 | 211 | 2.50e-141 | 393 |
| MS.gene29468.t1 | MTR_3g067730 | 60.088 | 228 | 67 | 7 | 1 | 216 | 1 | 216 | 8.51e-77 | 230 |
| MS.gene29468.t1 | MTR_1g030740 | 48.558 | 208 | 97 | 4 | 1 | 206 | 1 | 200 | 1.48e-58 | 184 |
| MS.gene29468.t1 | MTR_4g085100 | 48.325 | 209 | 93 | 5 | 1 | 205 | 1 | 198 | 7.42e-52 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29468.t1 | AT1G66480 | 57.062 | 177 | 67 | 6 | 1 | 170 | 1 | 175 | 4.71e-60 | 188 |
| MS.gene29468.t1 | AT5G37840 | 54.011 | 187 | 78 | 4 | 1 | 185 | 1 | 181 | 2.27e-57 | 181 |
| MS.gene29468.t1 | AT2G01340 | 52.907 | 172 | 69 | 5 | 1 | 171 | 1 | 161 | 3.79e-53 | 170 |
| MS.gene29468.t1 | AT1G71015 | 50.000 | 170 | 76 | 4 | 1 | 170 | 1 | 161 | 5.48e-40 | 136 |
| MS.gene29468.t1 | AT1G71015 | 50.000 | 170 | 76 | 4 | 1 | 170 | 1 | 161 | 5.48e-40 | 136 |
Find 59 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTACTCACTATATATTTA+AGG | 0.115188 | 5.3:+64391142 | None:intergenic |
| ACAACTTCGTTTGATGTTAT+TGG | 0.130160 | 5.3:+64392877 | None:intergenic |
| GAAACCACCATCATCAAATT+TGG | 0.171380 | 5.3:-64392593 | MS.gene29468:CDS |
| GAAGATTATGAGTTTGTATA+TGG | 0.218361 | 5.3:-64392464 | MS.gene29468:CDS |
| CATCAAATTTGGGCTTTGAT+AGG | 0.291266 | 5.3:-64392582 | MS.gene29468:CDS |
| GGCTTTGATAGGCCCTTTGA+TGG | 0.319942 | 5.3:-64392571 | MS.gene29468:CDS |
| GAGTTCTTGATTTGGCTCTA+AGG | 0.329180 | 5.3:+64392786 | None:intergenic |
| CAGTAAAACACTTCGGGCTT+AGG | 0.337959 | 5.3:-64392816 | MS.gene29468:CDS |
| GCTAAGATTATGAAGATAGA+TGG | 0.365523 | 5.3:-64392922 | MS.gene29468:CDS |
| CTCAAGCAGTAAAACACTTC+GGG | 0.366167 | 5.3:-64392822 | MS.gene29468:CDS |
| TTGGGCTTGAGTTCTTGATT+TGG | 0.367392 | 5.3:+64392778 | None:intergenic |
| TACATACCCCACGAGGCTTT+CGG | 0.379415 | 5.3:+64392392 | None:intergenic |
| GGGTACGTTCTAGTGGAATA+AGG | 0.387824 | 5.3:-64392687 | MS.gene29468:CDS |
| TTCATCTTCGGGCTGAACCT+TGG | 0.389122 | 5.3:+64392729 | None:intergenic |
| TCATCTTCGGGCTGAACCTT+GGG | 0.401043 | 5.3:+64392730 | None:intergenic |
| AAACCACCATCATCAAATTT+GGG | 0.402951 | 5.3:-64392592 | MS.gene29468:CDS |
| ACTACTCACTATATATTTAA+GGG | 0.405042 | 5.3:+64391143 | None:intergenic |
| AGTTCTTGATTTGGCTCTAA+GGG | 0.425177 | 5.3:+64392787 | None:intergenic |
| GACTTTCTTCAATCTCCATT+GGG | 0.425939 | 5.3:+64390328 | None:intergenic |
| GGACTTTCTTCAATCTCCAT+TGG | 0.427544 | 5.3:+64390327 | None:intergenic |
| AGCCCAGTTGGAAAAGTTGA+TGG | 0.431835 | 5.3:-64392518 | MS.gene29468:CDS |
| AGTAAAACACTTCGGGCTTA+GGG | 0.449480 | 5.3:-64392815 | MS.gene29468:CDS |
| TATTGAGGAGCTGCTTCAAC+AGG | 0.453324 | 5.3:+64390306 | None:intergenic |
| TTGATGGAAGAGAGTAATGA+TGG | 0.466806 | 5.3:-64392502 | MS.gene29468:CDS |
| CACTAACGAAATATCTGAAA+CGG | 0.473609 | 5.3:+64392615 | None:intergenic |
| GAATCAAGTAAAACATGGTT+GGG | 0.474525 | 5.3:+64392844 | None:intergenic |
| CCACTAGAACGTACCCTCCT+AGG | 0.478189 | 5.3:+64392694 | None:intergenic |
| AGAATCAAGTAAAACATGGT+TGG | 0.486013 | 5.3:+64392843 | None:intergenic |
| GAACCTTGGGTAAATCTACT+AGG | 0.494957 | 5.3:+64392743 | None:intergenic |
| TAATGATGGGTCTGAGGTGG+CGG | 0.497077 | 5.3:-64392488 | MS.gene29468:CDS |
| CACCCTCATGGACCCATCAA+AGG | 0.503885 | 5.3:+64392558 | None:intergenic |
| AATAAGGAACGTGGATGCTA+AGG | 0.505115 | 5.3:-64392671 | MS.gene29468:CDS |
| AAGATTATGAGTTTGTATAT+GGG | 0.514266 | 5.3:-64392463 | MS.gene29468:CDS |
| AAGCCTCATCTTCACCCTCA+TGG | 0.515255 | 5.3:+64392546 | None:intergenic |
| ATGAGTTTGTATATGGGTAG+CGG | 0.520469 | 5.3:-64392457 | MS.gene29468:CDS |
| ACCCTCATGGACCCATCAAA+GGG | 0.521258 | 5.3:+64392559 | None:intergenic |
| GCTTTGATAGGCCCTTTGAT+GGG | 0.524979 | 5.3:-64392570 | MS.gene29468:CDS |
| CCTAGGAGGGTACGTTCTAG+TGG | 0.534238 | 5.3:-64392694 | MS.gene29468:CDS |
| AAGCCCAAATTTGATGATGG+TGG | 0.537750 | 5.3:+64392589 | None:intergenic |
| GAGGCTTCCTAAAGCCCAGT+TGG | 0.560896 | 5.3:-64392530 | MS.gene29468:CDS |
| TCAAAGCCCAAATTTGATGA+TGG | 0.561669 | 5.3:+64392586 | None:intergenic |
| TCTCAAGCAGTAAAACACTT+CGG | 0.563644 | 5.3:-64392823 | MS.gene29468:CDS |
| CCAATCATGGGAAACACCAT+AGG | 0.564589 | 5.3:-64392958 | None:intergenic |
| ATAAGGAACGTGGATGCTAA+GGG | 0.588791 | 5.3:-64392670 | MS.gene29468:CDS |
| GGCCCTTTGATGGGTCCATG+AGG | 0.590646 | 5.3:-64392561 | MS.gene29468:CDS |
| GGTCCATGAGGGTGAAGATG+AGG | 0.594224 | 5.3:-64392549 | MS.gene29468:CDS |
| CCATAGAGGAAATACTATTG+AGG | 0.594976 | 5.3:+64390291 | None:intergenic |
| CTTGAGAATCAAGTAAAACA+TGG | 0.599048 | 5.3:+64392839 | None:intergenic |
| CTTCCTAGTAGATTTACCCA+AGG | 0.604663 | 5.3:-64392746 | MS.gene29468:CDS |
| GGGTAGCGGTGGTGATGCGG+CGG | 0.614054 | 5.3:-64392443 | MS.gene29468:CDS |
| GCCCTTTGATGGGTCCATGA+GGG | 0.621686 | 5.3:-64392560 | MS.gene29468:CDS |
| GGTGATGCGGCGGAGCATGA+CGG | 0.634118 | 5.3:-64392433 | MS.gene29468:CDS |
| TATGGGTAGCGGTGGTGATG+CGG | 0.636003 | 5.3:-64392446 | MS.gene29468:CDS |
| GAGTAATGATGGGTCTGAGG+TGG | 0.637797 | 5.3:-64392491 | MS.gene29468:CDS |
| AGAGAGTAATGATGGGTCTG+AGG | 0.645019 | 5.3:-64392494 | MS.gene29468:CDS |
| TGATGGAAGAGAGTAATGAT+GGG | 0.646933 | 5.3:-64392501 | MS.gene29468:CDS |
| TTCTAGTGGAATAAGGAACG+TGG | 0.683798 | 5.3:-64392680 | MS.gene29468:CDS |
| AGTTTGTATATGGGTAGCGG+TGG | 0.722789 | 5.3:-64392454 | MS.gene29468:CDS |
| ACGTACCCTCCTAGGTAACG+AGG | 0.744483 | 5.3:+64392702 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATTTTTTTTTAGAAAAT+GGG | + | chr5.3:64391175-64391194 | None:intergenic | 10.0% |
| !!! | TTTTGTAATAATTTCTTTTA+TGG | - | chr5.3:64391526-64391545 | MS.gene29468:intron | 10.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr5.3:64391244-64391263 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr5.3:64391245-64391264 | None:intergenic | 15.0% |
| !!! | AACTCAATTACTTTTTTTTA+GGG | - | chr5.3:64391902-64391921 | MS.gene29468:intron | 15.0% |
| !!! | ATTTTACTTGCTTAAAAATT+AGG | + | chr5.3:64392313-64392332 | None:intergenic | 15.0% |
| !!! | GAACATTTTTTTTTAGAAAA+TGG | + | chr5.3:64391176-64391195 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | + | chr5.3:64391310-64391329 | None:intergenic | 15.0% |
| !!! | TTTTGTTGTTATTATTATCT+TGG | - | chr5.3:64390913-64390932 | MS.gene29468:intron | 15.0% |
| !! | AAAATAACATTCTTTCAAAG+TGG | - | chr5.3:64391013-64391032 | MS.gene29468:intron | 20.0% |
| !! | AAATTTCGCTACATTAAATT+TGG | - | chr5.3:64392166-64392185 | MS.gene29468:intron | 20.0% |
| !! | AACTACTCACTATATATTTA+AGG | + | chr5.3:64392118-64392137 | None:intergenic | 20.0% |
| !! | AAGATTATGAGTTTGTATAT+GGG | - | chr5.3:64390794-64390813 | MS.gene29468:intron | 20.0% |
| !! | AATAACTTAGTACCTAAAAT+AGG | + | chr5.3:64392839-64392858 | None:intergenic | 20.0% |
| !! | ACTACTCACTATATATTTAA+GGG | + | chr5.3:64392117-64392136 | None:intergenic | 20.0% |
| !! | TAGTAAGAAGAATAAATCAA+AGG | + | chr5.3:64391596-64391615 | None:intergenic | 20.0% |
| !!! | AAACTTATTAAAGGAGATTT+TGG | - | chr5.3:64392530-64392549 | MS.gene29468:CDS | 20.0% |
| !!! | AAGACTTTGGATTTTAATAA+AGG | - | chr5.3:64392063-64392082 | MS.gene29468:intron | 20.0% |
| !!! | AATAACATGTAGATTTTGTT+TGG | - | chr5.3:64392621-64392640 | MS.gene29468:CDS | 20.0% |
| !!! | AATTCATTAACACAATTTTG+TGG | + | chr5.3:64392865-64392884 | None:intergenic | 20.0% |
| !!! | ATAACATTATGACGTTTTAA+GGG | + | chr5.3:64391464-64391483 | None:intergenic | 20.0% |
| !!! | ATTAGATAGTTTCCTATTTT+AGG | - | chr5.3:64392824-64392843 | MS.gene29468:CDS | 20.0% |
| !!! | ATTTCTTTTATGGTTTTTCT+AGG | - | chr5.3:64391536-64391555 | MS.gene29468:intron | 20.0% |
| !!! | CATATATTGATTGCATTTTA+AGG | + | chr5.3:64392237-64392256 | None:intergenic | 20.0% |
| !!! | GAACTCAATTACTTTTTTTT+AGG | - | chr5.3:64391901-64391920 | MS.gene29468:intron | 20.0% |
| !!! | TATAACATTATGACGTTTTA+AGG | + | chr5.3:64391465-64391484 | None:intergenic | 20.0% |
| ! | AAACAATTTAAGTGTGTGTT+TGG | + | chr5.3:64392770-64392789 | None:intergenic | 25.0% |
| ! | AAGAAGAATAAATCAAAGGA+AGG | + | chr5.3:64391592-64391611 | None:intergenic | 25.0% |
| ! | AGCACATATAGTAGAAAAAT+TGG | + | chr5.3:64391673-64391692 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr5.3:64391286-64391305 | None:intergenic | 25.0% |
| ! | GAAGATTATGAGTTTGTATA+TGG | - | chr5.3:64390793-64390812 | MS.gene29468:intron | 25.0% |
| ! | GAATACGAGGAAAAAAAATA+AGG | + | chr5.3:64391413-64391432 | None:intergenic | 25.0% |
| ! | GGCACAATAAAACTTATTAA+AGG | - | chr5.3:64392521-64392540 | MS.gene29468:CDS | 25.0% |
| ! | TAAATCAAAGGAAGGAAAAT+CGG | + | chr5.3:64391584-64391603 | None:intergenic | 25.0% |
| ! | TACTTCAAATAATGTCAAAC+AGG | - | chr5.3:64392342-64392361 | MS.gene29468:intron | 25.0% |
| ! | TGTATAAATAAAGGAGAAAG+TGG | + | chr5.3:64391301-64391320 | None:intergenic | 25.0% |
| ! | TTCATGTTAGAATTCGAATT+TGG | - | chr5.3:64391837-64391856 | MS.gene29468:intron | 25.0% |
| ! | TTTAATGTATAGTTTCTTCG+TGG | - | chr5.3:64392280-64392299 | MS.gene29468:intron | 25.0% |
| !! | ACTAGGAAGTAAATTTTCTT+GGG | + | chr5.3:64390500-64390519 | None:intergenic | 25.0% |
| !! | TACTAGGAAGTAAATTTTCT+TGG | + | chr5.3:64390501-64390520 | None:intergenic | 25.0% |
| !! | TATTGGAGTTTTTACTTTGA+AGG | + | chr5.3:64390366-64390385 | None:intergenic | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | + | chr5.3:64391198-64391217 | None:intergenic | 25.0% |
| AAACCACCATCATCAAATTT+GGG | - | chr5.3:64390665-64390684 | MS.gene29468:intron | 30.0% | |
| AAATCAAAGGAAGGAAAATC+GGG | + | chr5.3:64391583-64391602 | None:intergenic | 30.0% | |
| ACAACTTCGTTTGATGTTAT+TGG | + | chr5.3:64390383-64390402 | None:intergenic | 30.0% | |
| AGAATCAAGTAAAACATGGT+TGG | + | chr5.3:64390417-64390436 | None:intergenic | 30.0% | |
| ATAGAAGCTTAACAAGACTT+TGG | - | chr5.3:64392050-64392069 | MS.gene29468:intron | 30.0% | |
| CACTAACGAAATATCTGAAA+CGG | + | chr5.3:64390645-64390664 | None:intergenic | 30.0% | |
| CTAAAGTAGGTCAATTAAAC+CGG | - | chr5.3:64391344-64391363 | MS.gene29468:intron | 30.0% | |
| CTTGAGAATCAAGTAAAACA+TGG | + | chr5.3:64390421-64390440 | None:intergenic | 30.0% | |
| GAATCAAGTAAAACATGGTT+GGG | + | chr5.3:64390416-64390435 | None:intergenic | 30.0% | |
| GCAATCAATATATGAAGTAG+AGG | - | chr5.3:64392243-64392262 | MS.gene29468:intron | 30.0% | |
| GCTAAGATTATGAAGATAGA+TGG | - | chr5.3:64390335-64390354 | MS.gene29468:CDS | 30.0% | |
| GTGATAAAACTAGACATGAT+AGG | + | chr5.3:64391731-64391750 | None:intergenic | 30.0% | |
| TAAAGTAGGTCAATTAAACC+GGG | - | chr5.3:64391345-64391364 | MS.gene29468:intron | 30.0% | |
| TAGTGTTTGTGTAAGAATCA+CGG | + | chr5.3:64392742-64392761 | None:intergenic | 30.0% | |
| TCAAATACCCAATTTAGCAA+GGG | - | chr5.3:64392558-64392577 | MS.gene29468:CDS | 30.0% | |
| TCTGTGTGAAAAACTAAAGT+AGG | - | chr5.3:64391331-64391350 | MS.gene29468:intron | 30.0% | |
| TTCAAATACCCAATTTAGCA+AGG | - | chr5.3:64392557-64392576 | MS.gene29468:CDS | 30.0% | |
| ! | CTATGTGAAAAGGATTTTGA+AGG | - | chr5.3:64392365-64392384 | MS.gene29468:intron | 30.0% |
| ! | GAAAACAAGCTTATGTGTTT+TGG | + | chr5.3:64391648-64391667 | None:intergenic | 30.0% |
| !! | TCTACATGTTATTTCTTCTC+TGG | + | chr5.3:64392614-64392633 | None:intergenic | 30.0% |
| !!! | AGCTTTTTTGCTTTTTCCTA+TGG | + | chr5.3:64390318-64390337 | None:intergenic | 30.0% |
| !!! | TAACGAGGTTTTTTCATCTT+CGG | + | chr5.3:64390543-64390562 | None:intergenic | 30.0% |
| AATACTCGTCGTTTACTTGT+TGG | - | chr5.3:64392495-64392514 | MS.gene29468:CDS | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr5.3:64391162-64391181 | None:intergenic | 35.0% | |
| ATGAAAAAACCTCGTTACCT+AGG | - | chr5.3:64390546-64390565 | MS.gene29468:intron | 35.0% | |
| ATGAGTTTGTATATGGGTAG+CGG | - | chr5.3:64390800-64390819 | MS.gene29468:intron | 35.0% | |
| CAAATACCCAATTTAGCAAG+GGG | - | chr5.3:64392559-64392578 | MS.gene29468:CDS | 35.0% | |
| GAAACCACCATCATCAAATT+TGG | - | chr5.3:64390664-64390683 | MS.gene29468:intron | 35.0% | |
| GACTTTCTTCAATCTCCATT+GGG | + | chr5.3:64392932-64392951 | None:intergenic | 35.0% | |
| GGGATTTGAACTCAATTACT+TGG | - | chr5.3:64391922-64391941 | MS.gene29468:intron | 35.0% | |
| TCAAAGCCCAAATTTGATGA+TGG | + | chr5.3:64390674-64390693 | None:intergenic | 35.0% | |
| TCTCAAGCAGTAAAACACTT+CGG | - | chr5.3:64390434-64390453 | MS.gene29468:intron | 35.0% | |
| TGATGGAAGAGAGTAATGAT+GGG | - | chr5.3:64390756-64390775 | MS.gene29468:intron | 35.0% | |
| TGTTTAGCGTAGCATAGATA+AGG | + | chr5.3:64391770-64391789 | None:intergenic | 35.0% | |
| TGTTTGGTATCACATTGAGT+AGG | - | chr5.3:64392637-64392656 | MS.gene29468:CDS | 35.0% | |
| TTGAAATCCGCAACAAGAAA+AGG | + | chr5.3:64391115-64391134 | None:intergenic | 35.0% | |
| TTGATGGAAGAGAGTAATGA+TGG | - | chr5.3:64390755-64390774 | MS.gene29468:intron | 35.0% | |
| ! | ATTTTGCCCCTTGCTAAATT+GGG | + | chr5.3:64392568-64392587 | None:intergenic | 35.0% |
| ! | CATCAAATTTGGGCTTTGAT+AGG | - | chr5.3:64390675-64390694 | MS.gene29468:intron | 35.0% |
| ! | TATTTTGCCCCTTGCTAAAT+TGG | + | chr5.3:64392569-64392588 | None:intergenic | 35.0% |
| ! | TTCCATCAACTTTTCCAACT+GGG | + | chr5.3:64390744-64390763 | None:intergenic | 35.0% |
| !! | AGTTCTTGATTTGGCTCTAA+GGG | + | chr5.3:64390473-64390492 | None:intergenic | 35.0% |
| !!! | AACGAGGTTTTTTCATCTTC+GGG | + | chr5.3:64390542-64390561 | None:intergenic | 35.0% |
| !!! | TTTTTTTCCTCGTATTCTCG+TGG | - | chr5.3:64391416-64391435 | MS.gene29468:intron | 35.0% |
| AAAAAACCTCGTTACCTAGG+AGG | - | chr5.3:64390549-64390568 | MS.gene29468:intron | 40.0% | |
| AAAAACCTCGTTACCTAGGA+GGG | - | chr5.3:64390550-64390569 | MS.gene29468:intron | 40.0% | |
| AACTGCAAGTTGTTCTCTAG+CGG | + | chr5.3:64392408-64392427 | None:intergenic | 40.0% | |
| AAGGAAAATCGGGTCAAAAG+AGG | + | chr5.3:64391573-64391592 | None:intergenic | 40.0% | |
| AATAAGGAACGTGGATGCTA+AGG | - | chr5.3:64390586-64390605 | MS.gene29468:intron | 40.0% | |
| AGTAAAACACTTCGGGCTTA+GGG | - | chr5.3:64390442-64390461 | MS.gene29468:intron | 40.0% | |
| ATAAGGAACGTGGATGCTAA+GGG | - | chr5.3:64390587-64390606 | MS.gene29468:intron | 40.0% | |
| ATACTTATACATACCCCACG+AGG | + | chr5.3:64390875-64390894 | None:intergenic | 40.0% | |
| CATAGATAAGGATGTTGCGT+TGG | + | chr5.3:64391758-64391777 | None:intergenic | 40.0% | |
| CTCAAGCAGTAAAACACTTC+GGG | - | chr5.3:64390435-64390454 | MS.gene29468:intron | 40.0% | |
| CTTCCTAGTAGATTTACCCA+AGG | - | chr5.3:64390511-64390530 | MS.gene29468:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr5.3:64391161-64391180 | None:intergenic | 40.0% | |
| GAACCTTGGGTAAATCTACT+AGG | + | chr5.3:64390517-64390536 | None:intergenic | 40.0% | |
| GGACTTTCTTCAATCTCCAT+TGG | + | chr5.3:64392933-64392952 | None:intergenic | 40.0% | |
| GTCAAACAGGCTATGTGAAA+AGG | - | chr5.3:64392355-64392374 | MS.gene29468:intron | 40.0% | |
| TTCGTTGTGGCGTTTCATAA+TGG | - | chr5.3:64391044-64391063 | MS.gene29468:intron | 40.0% | |
| TTCTAGTGGAATAAGGAACG+TGG | - | chr5.3:64390577-64390596 | MS.gene29468:intron | 40.0% | |
| TTGGGCTTGAGTTCTTGATT+TGG | + | chr5.3:64390482-64390501 | None:intergenic | 40.0% | |
| ! | AACTTTTCCAACTGGGCTTT+AGG | + | chr5.3:64390737-64390756 | None:intergenic | 40.0% |
| ! | CTTCCATCAACTTTTCCAAC+TGG | + | chr5.3:64390745-64390764 | None:intergenic | 40.0% |
| ! | TTGTTCTCTAGCGGTTTGTT+AGG | + | chr5.3:64392399-64392418 | None:intergenic | 40.0% |
| !! | AAGCCCAAATTTGATGATGG+TGG | + | chr5.3:64390671-64390690 | None:intergenic | 40.0% |
| !! | GAGTTCTTGATTTGGCTCTA+AGG | + | chr5.3:64390474-64390493 | None:intergenic | 40.0% |
| AGCCCAGTTGGAAAAGTTGA+TGG | - | chr5.3:64390739-64390758 | MS.gene29468:intron | 45.0% | |
| AGTGGCTTGAAGTTTCGTTG+TGG | - | chr5.3:64391031-64391050 | MS.gene29468:intron | 45.0% | |
| ATATCATACTTCCTCCGTCC+CGG | - | chr5.3:64391140-64391159 | MS.gene29468:intron | 45.0% | |
| ATTCTCGTGGCATTTGGCAA+AGG | - | chr5.3:64391429-64391448 | MS.gene29468:intron | 45.0% | |
| CAGTAAAACACTTCGGGCTT+AGG | - | chr5.3:64390441-64390460 | MS.gene29468:intron | 45.0% | |
| GACTTGCGTGAAATTGCATG+TGG | - | chr5.3:64391074-64391093 | MS.gene29468:intron | 45.0% | |
| GCTTTGATAGGCCCTTTGAT+GGG | - | chr5.3:64390687-64390706 | MS.gene29468:intron | 45.0% | |
| GGGTACGTTCTAGTGGAATA+AGG | - | chr5.3:64390570-64390589 | MS.gene29468:intron | 45.0% | |
| GTAGGTCAATTAAACCGGGA+CGG | - | chr5.3:64391349-64391368 | MS.gene29468:intron | 45.0% | |
| TATTGAGGAGCTGCTTCAAC+AGG | + | chr5.3:64392954-64392973 | None:intergenic | 45.0% | |
| TGCATGTGGTTGCAAAGACA+GGG | - | chr5.3:64391088-64391107 | MS.gene29468:intron | 45.0% | |
| TTGCATGTGGTTGCAAAGAC+AGG | - | chr5.3:64391087-64391106 | MS.gene29468:intron | 45.0% | |
| ! | ACAGGGTCCTTTTCTTGTTG+CGG | - | chr5.3:64391105-64391124 | MS.gene29468:intron | 45.0% |
| ! | AGCATGACGGTGATGTTTTG+CGG | - | chr5.3:64390837-64390856 | MS.gene29468:intron | 45.0% |
| ! | AGTTTGTATATGGGTAGCGG+TGG | - | chr5.3:64390803-64390822 | MS.gene29468:intron | 45.0% |
| ! | TCGTCGTTTACTTGTTGGTC+TGG | - | chr5.3:64392500-64392519 | MS.gene29468:CDS | 45.0% |
| !! | ACGAGTGAGTTTTAGCCCAA+TGG | - | chr5.3:64392914-64392933 | MS.gene29468:CDS | 45.0% |
| !! | AGAGAGTAATGATGGGTCTG+AGG | - | chr5.3:64390763-64390782 | MS.gene29468:intron | 45.0% |
| !! | AAAAATAAAATATTATTGAA+GGG | - | chr5.3:64391794-64391813 | MS.gene29468:intron | 5.0% |
| !! | AATTATTACAAAATATTTAA+AGG | + | chr5.3:64391519-64391538 | None:intergenic | 5.0% |
| !! | TAAAAATAAAATATTATTGA+AGG | - | chr5.3:64391793-64391812 | MS.gene29468:intron | 5.0% |
| !!! | ATAAAAAATAAATAAACTTT+TGG | - | chr5.3:64391384-64391403 | MS.gene29468:intron | 5.0% |
| !!! | TTTATATTTTAATACTTAAT+TGG | - | chr5.3:64391979-64391998 | MS.gene29468:intron | 5.0% |
| AAGCCTCATCTTCACCCTCA+TGG | + | chr5.3:64390714-64390733 | None:intergenic | 50.0% | |
| ACCCTCATGGACCCATCAAA+GGG | + | chr5.3:64390701-64390720 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr5.3:64391157-64391176 | None:intergenic | 50.0% | |
| CCAAATGCCACGAGAATACG+AGG | + | chr5.3:64391426-64391445 | None:intergenic | 50.0% | |
| CCTCGTATTCTCGTGGCATT+TGG | - | chr5.3:64391423-64391442 | MS.gene29468:intron | 50.0% | |
| GTCAATTAAACCGGGACGGA+GGG | - | chr5.3:64391353-64391372 | MS.gene29468:intron | 50.0% | |
| TACATACCCCACGAGGCTTT+CGG | + | chr5.3:64390868-64390887 | None:intergenic | 50.0% | |
| TCATCTTCGGGCTGAACCTT+GGG | + | chr5.3:64390530-64390549 | None:intergenic | 50.0% | |
| TTCATCTTCGGGCTGAACCT+TGG | + | chr5.3:64390531-64390550 | None:intergenic | 50.0% | |
| ! | GGCTTTGATAGGCCCTTTGA+TGG | - | chr5.3:64390686-64390705 | MS.gene29468:intron | 50.0% |
| !! | GAGTAATGATGGGTCTGAGG+TGG | - | chr5.3:64390766-64390785 | MS.gene29468:intron | 50.0% |
| !! | TAATGATGGGTCTGAGGTGG+CGG | - | chr5.3:64390769-64390788 | MS.gene29468:intron | 50.0% |
| ACGTACCCTCCTAGGTAACG+AGG | + | chr5.3:64390558-64390577 | None:intergenic | 55.0% | |
| ATCAAGTACTCCCTCCGTCC+CGG | + | chr5.3:64391366-64391385 | None:intergenic | 55.0% | |
| CACCCTCATGGACCCATCAA+AGG | + | chr5.3:64390702-64390721 | None:intergenic | 55.0% | |
| CCACTAGAACGTACCCTCCT+AGG | + | chr5.3:64390566-64390585 | None:intergenic | 55.0% | |
| GAGGCTTCCTAAAGCCCAGT+TGG | - | chr5.3:64390727-64390746 | MS.gene29468:intron | 55.0% | |
| GCTAAACCGAAAGCCTCGTG+GGG | - | chr5.3:64390859-64390878 | MS.gene29468:intron | 55.0% | |
| GGCTAAACCGAAAGCCTCGT+GGG | - | chr5.3:64390858-64390877 | MS.gene29468:intron | 55.0% | |
| GGTCAATTAAACCGGGACGG+AGG | - | chr5.3:64391352-64391371 | MS.gene29468:intron | 55.0% | |
| GGTCCATGAGGGTGAAGATG+AGG | - | chr5.3:64390708-64390727 | MS.gene29468:intron | 55.0% | |
| ! | CCTAGGAGGGTACGTTCTAG+TGG | - | chr5.3:64390563-64390582 | MS.gene29468:intron | 55.0% |
| ! | GCCCTTTGATGGGTCCATGA+GGG | - | chr5.3:64390697-64390716 | MS.gene29468:intron | 55.0% |
| ! | TATGGGTAGCGGTGGTGATG+CGG | - | chr5.3:64390811-64390830 | MS.gene29468:intron | 55.0% |
| CGGCTAAACCGAAAGCCTCG+TGG | - | chr5.3:64390857-64390876 | MS.gene29468:intron | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr5.3:64391154-64391173 | None:intergenic | 60.0% | |
| ! | GGCCCTTTGATGGGTCCATG+AGG | - | chr5.3:64390696-64390715 | MS.gene29468:intron | 60.0% |
| GGTGATGCGGCGGAGCATGA+CGG | - | chr5.3:64390824-64390843 | MS.gene29468:intron | 65.0% | |
| ! | GGGTAGCGGTGGTGATGCGG+CGG | - | chr5.3:64390814-64390833 | MS.gene29468:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 64390305 | 64392974 | 64390305 | ID=MS.gene29468 |
| chr5.3 | mRNA | 64390305 | 64392974 | 64390305 | ID=MS.gene29468.t1;Parent=MS.gene29468 |
| chr5.3 | exon | 64392404 | 64392974 | 64392404 | ID=MS.gene29468.t1.exon1;Parent=MS.gene29468.t1 |
| chr5.3 | CDS | 64392404 | 64392974 | 64392404 | ID=cds.MS.gene29468.t1;Parent=MS.gene29468.t1 |
| chr5.3 | exon | 64391152 | 64391174 | 64391152 | ID=MS.gene29468.t1.exon2;Parent=MS.gene29468.t1 |
| chr5.3 | CDS | 64391152 | 64391174 | 64391152 | ID=cds.MS.gene29468.t1;Parent=MS.gene29468.t1 |
| chr5.3 | exon | 64390305 | 64390367 | 64390305 | ID=MS.gene29468.t1.exon3;Parent=MS.gene29468.t1 |
| chr5.3 | CDS | 64390305 | 64390367 | 64390305 | ID=cds.MS.gene29468.t1;Parent=MS.gene29468.t1 |
| Gene Sequence |
| Protein sequence |
