Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29519.t1 | XP_003616475.1 | 100 | 361 | 0 | 0 | 8 | 368 | 1 | 361 | 3.20E-194 | 687.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29519.t1 | O22287 | 91.1 | 361 | 32 | 0 | 8 | 368 | 1 | 361 | 1.5e-179 | 630.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29519.t1 | G7KGV6 | 100.0 | 361 | 0 | 0 | 8 | 368 | 1 | 361 | 2.3e-194 | 687.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29519 | MS.gene20834 | PPI |
| MS.gene20783 | MS.gene29519 | PPI |
| MS.gene70588 | MS.gene29519 | PPI |
| MS.gene29519 | MS.gene022258 | PPI |
| MS.gene25915 | MS.gene29519 | PPI |
| MS.gene074391 | MS.gene29519 | PPI |
| MS.gene29519 | MS.gene07262 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29519.t1 | MTR_5g080770 | 100.000 | 361 | 0 | 0 | 8 | 368 | 1 | 361 | 0.0 | 734 |
| MS.gene29519.t1 | MTR_3g069070 | 93.075 | 361 | 25 | 0 | 8 | 368 | 1 | 361 | 0.0 | 684 |
| MS.gene29519.t1 | MTR_3g069070 | 92.384 | 302 | 23 | 0 | 67 | 368 | 1 | 302 | 0.0 | 572 |
| MS.gene29519.t1 | MTR_4g133690 | 77.562 | 361 | 24 | 3 | 8 | 368 | 1 | 304 | 0.0 | 537 |
| MS.gene29519.t1 | MTR_3g078570 | 32.000 | 400 | 224 | 7 | 10 | 361 | 10 | 409 | 5.16e-63 | 207 |
| MS.gene29519.t1 | MTR_6g008840 | 32.432 | 407 | 226 | 8 | 10 | 368 | 9 | 414 | 5.05e-61 | 202 |
| MS.gene29519.t1 | MTR_3g078570 | 31.755 | 359 | 206 | 6 | 10 | 329 | 10 | 368 | 8.94e-57 | 190 |
| MS.gene29519.t1 | MTR_4g071670 | 31.034 | 232 | 108 | 6 | 175 | 368 | 3 | 220 | 7.24e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29519.t1 | AT2G39770 | 91.690 | 361 | 30 | 0 | 8 | 368 | 1 | 361 | 0.0 | 680 |
| MS.gene29519.t1 | AT2G39770 | 91.690 | 361 | 30 | 0 | 8 | 368 | 1 | 361 | 0.0 | 680 |
| MS.gene29519.t1 | AT2G39770 | 91.690 | 361 | 30 | 0 | 8 | 368 | 1 | 361 | 0.0 | 680 |
| MS.gene29519.t1 | AT3G55590 | 85.165 | 364 | 51 | 1 | 8 | 368 | 1 | 364 | 0.0 | 637 |
| MS.gene29519.t1 | AT4G30570 | 76.292 | 329 | 77 | 1 | 28 | 355 | 1 | 329 | 0.0 | 516 |
| MS.gene29519.t1 | AT1G74910 | 30.788 | 406 | 233 | 8 | 10 | 368 | 11 | 415 | 1.59e-62 | 206 |
| MS.gene29519.t1 | AT1G74910 | 30.788 | 406 | 233 | 8 | 10 | 368 | 11 | 415 | 1.59e-62 | 206 |
| MS.gene29519.t1 | AT2G04650 | 31.552 | 393 | 228 | 7 | 10 | 361 | 8 | 400 | 1.58e-61 | 203 |
| MS.gene29519.t1 | AT2G04650 | 31.169 | 385 | 226 | 6 | 16 | 361 | 4 | 388 | 4.84e-61 | 201 |
| MS.gene29519.t1 | AT1G74910 | 30.685 | 365 | 215 | 6 | 10 | 336 | 11 | 375 | 7.87e-57 | 190 |
Find 113 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGGTCCTTCCTGGTTTC+TGG | 0.049637 | 5.3:+65072436 | MS.gene29519:CDS |
| GAGACATCCCTCGCCAATTT+TGG | 0.195747 | 5.3:-65072589 | None:intergenic |
| CCTATTGAATCCCTCTGTTT+TGG | 0.205302 | 5.3:+65072338 | MS.gene29519:CDS |
| TACCTCTGGTTGGTAATTAA+TGG | 0.211786 | 5.3:-65071746 | None:intergenic |
| CACAATGAAGGCATTGATTC+TGG | 0.231325 | 5.3:+65071312 | MS.gene29519:CDS |
| GCTTACCTTTGTTACCATTA+TGG | 0.253775 | 5.3:-65072109 | None:intergenic |
| TGCATTTCCAGTAGTATTAT+TGG | 0.270402 | 5.3:+65072714 | MS.gene29519:CDS |
| GTTGATGAGCCATCAAAATA+TGG | 0.294988 | 5.3:+65072222 | MS.gene29519:CDS |
| GCATTTCCAGTAGTATTATT+GGG | 0.340951 | 5.3:+65072715 | MS.gene29519:CDS |
| GTGGACGAAACAGCCAAAAT+TGG | 0.347283 | 5.3:+65072576 | MS.gene29519:CDS |
| GCATTGTTGAGTCTGGTGTT+AGG | 0.363709 | 5.3:+65072643 | MS.gene29519:CDS |
| CACTGGCTTGAGGCTTTACC+TGG | 0.369547 | 5.3:+65072488 | MS.gene29519:CDS |
| AAAATATGGGGTGGTTGTTA+TGG | 0.370396 | 5.3:+65072236 | MS.gene29519:CDS |
| GCAAAATCAACAAGAGGCTT+AGG | 0.374674 | 5.3:-65071379 | None:intergenic |
| CTATATGCAATGGTCCTTCC+TGG | 0.379450 | 5.3:+65072429 | MS.gene29519:CDS |
| GGCATTCCACTGTCGGGCAA+TGG | 0.380847 | 5.3:+65072739 | MS.gene29519:CDS |
| CTTCCCCTCCATGGGATTTG+TGG | 0.384607 | 5.3:-65072083 | None:intergenic |
| TGCAAGCATGTTTCTTGATC+CGG | 0.388859 | 5.3:-65072695 | None:intergenic |
| TGAAGGCATTGATTCTGGTT+GGG | 0.402317 | 5.3:+65071317 | MS.gene29519:CDS |
| AATTCAATCATTTCTTTAAG+TGG | 0.409592 | 5.3:-65072060 | None:intergenic |
| ATTTCAGATAGAGGCTCTTA+AGG | 0.411528 | 5.3:+65071696 | MS.gene29519:intron |
| GCATTCCACTGTCGGGCAAT+GGG | 0.416812 | 5.3:+65072740 | MS.gene29519:CDS |
| ATTTGTCTTAATCTCCTTGT+GGG | 0.419610 | 5.3:-65072844 | None:intergenic |
| TCGCAAGAAACTGAACCATT+AGG | 0.421123 | 5.3:+65071943 | MS.gene29519:CDS |
| GCCGGTGGCTCTAACATTGT+GGG | 0.431030 | 5.3:+65072543 | MS.gene29519:CDS |
| CCTGATGTCGCTATCGGTCC+TGG | 0.434526 | 5.3:+65072618 | MS.gene29519:CDS |
| CCTGGCTGCATTGTTGAGTC+TGG | 0.437150 | 5.3:+65072636 | MS.gene29519:CDS |
| CTTTACCTGATGCAGAATCA+TGG | 0.441184 | 5.3:-65071410 | None:intergenic |
| CAAACCCATGATTCTGCATC+AGG | 0.445402 | 5.3:+65071405 | MS.gene29519:CDS |
| ATGCCACCCAATAATACTAC+TGG | 0.456491 | 5.3:-65072721 | None:intergenic |
| GAAGGCATTGATTCTGGTTG+GGG | 0.475018 | 5.3:+65071318 | MS.gene29519:CDS |
| ATTGGCGAGGGATGTCTCAT+TGG | 0.477910 | 5.3:+65072594 | MS.gene29519:CDS |
| GTTGTTATGGAGGAGACAAC+AGG | 0.478358 | 5.3:+65072249 | MS.gene29519:CDS |
| GTTGGTAACAAAATCAATGC+TGG | 0.478891 | 5.3:+65072309 | MS.gene29519:CDS |
| CCAAAACAGAGGGATTCAAT+AGG | 0.480924 | 5.3:-65072338 | None:intergenic |
| GAAGAAGTCTTCTTCGAAGT+TGG | 0.483283 | 5.3:+65072521 | MS.gene29519:CDS |
| GGTTATGTTGAATTTCTTGA+AGG | 0.483467 | 5.3:+65071885 | MS.gene29519:intron |
| ATATGGGGTGGTTGTTATGG+AGG | 0.483471 | 5.3:+65072239 | MS.gene29519:CDS |
| GCACAGTAATGCGAGGAGTC+CGG | 0.487294 | 5.3:+65072676 | MS.gene29519:CDS |
| TTGATGAGCCATCAAAATAT+GGG | 0.488066 | 5.3:+65072223 | MS.gene29519:CDS |
| TTGTTACCAACAAACAACTT+TGG | 0.493157 | 5.3:-65072297 | None:intergenic |
| ATTGGGTGGCATTCCACTGT+CGG | 0.494027 | 5.3:+65072732 | MS.gene29519:CDS |
| ATGAAGGCATTGATTCTGGT+TGG | 0.494195 | 5.3:+65071316 | MS.gene29519:CDS |
| TTATGGAAGCTTCCCCTCCA+TGG | 0.496188 | 5.3:-65072092 | None:intergenic |
| TGGAGGGGAAGCTTCCATAA+TGG | 0.497290 | 5.3:+65072095 | MS.gene29519:CDS |
| TTGGGTGGCATTCCACTGTC+GGG | 0.498250 | 5.3:+65072733 | MS.gene29519:CDS |
| GTGGAGAATATGACTATCCT+TGG | 0.500881 | 5.3:+65072768 | MS.gene29519:CDS |
| TGGAGTCACTGAAGTGGTAC+TGG | 0.502053 | 5.3:+65071723 | MS.gene29519:CDS |
| GGTCCTTCCTGGTTTCTGGA+TGG | 0.503601 | 5.3:+65072440 | MS.gene29519:CDS |
| TTAGGGACACTGAGTGTCAA+TGG | 0.504104 | 5.3:-65071361 | None:intergenic |
| AGACCTCACATGACAATCTC+TGG | 0.504323 | 5.3:-65072876 | None:intergenic |
| TTTACCTGATGCAGAATCAT+GGG | 0.506591 | 5.3:-65071409 | None:intergenic |
| GGCCGGTGGCTCTAACATTG+TGG | 0.507298 | 5.3:+65072542 | MS.gene29519:CDS |
| TATGGAAGCTTCCCCTCCAT+GGG | 0.509917 | 5.3:-65072091 | None:intergenic |
| CAAAATCAACAAGAGGCTTA+GGG | 0.510775 | 5.3:-65071378 | None:intergenic |
| CCAGGACCGATAGCGACATC+AGG | 0.513487 | 5.3:-65072618 | None:intergenic |
| ATAGAGGCTCTTAAGGCGAC+TGG | 0.515685 | 5.3:+65071703 | MS.gene29519:CDS |
| TGTCGGGCAATGGGCTCGAG+TGG | 0.517470 | 5.3:+65072749 | MS.gene29519:CDS |
| CCCCACAATGTTAGAGCCAC+CGG | 0.519548 | 5.3:-65072544 | None:intergenic |
| ATTCAATCATTTCTTTAAGT+GGG | 0.523853 | 5.3:-65072059 | None:intergenic |
| ATTGGACCTGATGTCGCTAT+CGG | 0.527457 | 5.3:+65072612 | MS.gene29519:CDS |
| CAAAGGACTTATCACAATGA+AGG | 0.529483 | 5.3:+65071300 | MS.gene29519:CDS |
| CAACCGAGGGACTATATCAC+TGG | 0.534394 | 5.3:+65072471 | MS.gene29519:CDS |
| TATTTGTCTTAATCTCCTTG+TGG | 0.538459 | 5.3:-65072845 | None:intergenic |
| AAGTCTTCTTCGAAGTTGGC+CGG | 0.541250 | 5.3:+65072525 | MS.gene29519:CDS |
| TGATCCTCCTTACCTCTGGT+TGG | 0.553108 | 5.3:-65071756 | None:intergenic |
| CCTGGTTTCTGGATGGACAT+CGG | 0.557795 | 5.3:+65072447 | MS.gene29519:CDS |
| ACTGAACCATTAGGAACTGC+AGG | 0.559054 | 5.3:+65071952 | MS.gene29519:CDS |
| TCGAGCCCATTGCCCGACAG+TGG | 0.567442 | 5.3:-65072745 | None:intergenic |
| ACTTCTTCCTCAGTGAGTCC+AGG | 0.572292 | 5.3:-65072506 | None:intergenic |
| GACAAGCTGATAGATGACTC+TGG | 0.573827 | 5.3:+65071994 | MS.gene29519:CDS |
| TTCAATTCGATCCAAAACAG+AGG | 0.573855 | 5.3:-65072349 | None:intergenic |
| CCGATGTCCATCCAGAAACC+AGG | 0.575033 | 5.3:-65072447 | None:intergenic |
| AGGCATTGATTCTGGTTGGG+GGG | 0.577286 | 5.3:+65071320 | MS.gene29519:CDS |
| TCAATTCGATCCAAAACAGA+GGG | 0.579956 | 5.3:-65072348 | None:intergenic |
| CATTGTGGGGAATGTTATTG+TGG | 0.580703 | 5.3:+65072557 | MS.gene29519:CDS |
| ATTGAATTCCACAAATCCCA+TGG | 0.584474 | 5.3:+65072075 | MS.gene29519:CDS |
| AATTCCACAAATCCCATGGA+GGG | 0.587789 | 5.3:+65072079 | MS.gene29519:CDS |
| TATGGAGGAGACAACAGGGC+AGG | 0.589773 | 5.3:+65072254 | MS.gene29519:CDS |
| GCTTGTCCCTAGCAAGAGCA+AGG | 0.593241 | 5.3:-65071978 | None:intergenic |
| AGCTTCCATAATGGTAACAA+AGG | 0.594491 | 5.3:+65072104 | MS.gene29519:CDS |
| ATAATCTCTCAGGAAAACAA+AGG | 0.597060 | 5.3:+65071283 | None:intergenic |
| TTGTCCCTAGCAAGAGCAAG+GGG | 0.600214 | 5.3:-65071976 | None:intergenic |
| AAGGCATTGATTCTGGTTGG+GGG | 0.602293 | 5.3:+65071319 | MS.gene29519:CDS |
| TTGTTAGCAAAATCAACAAG+AGG | 0.603818 | 5.3:-65071385 | None:intergenic |
| CGAAACAGCCAAAATTGGCG+AGG | 0.610805 | 5.3:+65072581 | MS.gene29519:CDS |
| CCAGACTCAACAATGCAGCC+AGG | 0.618646 | 5.3:-65072636 | None:intergenic |
| TTTGTCTTAATCTCCTTGTG+GGG | 0.619933 | 5.3:-65072843 | None:intergenic |
| CTTGTCCCTAGCAAGAGCAA+GGG | 0.621120 | 5.3:-65071977 | None:intergenic |
| TGTGATGAGATTTACAGCAA+TGG | 0.623004 | 5.3:+65072807 | MS.gene29519:CDS |
| TTTCCAGTAGTATTATTGGG+TGG | 0.628400 | 5.3:+65072718 | MS.gene29519:CDS |
| AAACATGAACATCTTCTCCA+AGG | 0.629278 | 5.3:-65072785 | None:intergenic |
| CCGGTGGCTCTAACATTGTG+GGG | 0.634245 | 5.3:+65072544 | MS.gene29519:CDS |
| TCTTCTTCGAAGTTGGCCGG+TGG | 0.634593 | 5.3:+65072528 | MS.gene29519:CDS |
| AAGCCAGTGATATAGTCCCT+CGG | 0.642817 | 5.3:-65072474 | None:intergenic |
| GGCGACTGGAGTCACTGAAG+TGG | 0.645491 | 5.3:+65071717 | MS.gene29519:CDS |
| GATGGACATCGGACAACCGA+GGG | 0.646783 | 5.3:+65072458 | MS.gene29519:CDS |
| GGGACTATATCACTGGCTTG+AGG | 0.648940 | 5.3:+65072478 | MS.gene29519:CDS |
| ATTCCACAAATCCCATGGAG+GGG | 0.651317 | 5.3:+65072080 | MS.gene29519:CDS |
| TCGCGCTGCACAGTAATGCG+AGG | 0.663076 | 5.3:+65072669 | MS.gene29519:CDS |
| GATTTACAGCAATGGTGGTG+TGG | 0.663263 | 5.3:+65072815 | MS.gene29519:CDS |
| TGATGAGCCATCAAAATATG+GGG | 0.663348 | 5.3:+65072224 | MS.gene29519:CDS |
| GGCCATTAATTACCAACCAG+AGG | 0.667310 | 5.3:+65071744 | MS.gene29519:CDS |
| GGATGGACATCGGACAACCG+AGG | 0.667624 | 5.3:+65072457 | MS.gene29519:CDS |
| TTGTTATGGAGGAGACAACA+GGG | 0.671972 | 5.3:+65072250 | MS.gene29519:CDS |
| GAAACAGCCAAAATTGGCGA+GGG | 0.673370 | 5.3:+65072582 | MS.gene29519:CDS |
| AAGCCAGAGATTGTCATGTG+AGG | 0.678411 | 5.3:+65072873 | MS.gene29519:CDS |
| GGCTTTACCTGGACTCACTG+AGG | 0.679034 | 5.3:+65072499 | MS.gene29519:CDS |
| GAATTCCACAAATCCCATGG+AGG | 0.679237 | 5.3:+65072078 | MS.gene29519:CDS |
| GATGAGATTTACAGCAATGG+TGG | 0.690673 | 5.3:+65072810 | MS.gene29519:CDS |
| TGTCCATCCAGAAACCAGGA+AGG | 0.712182 | 5.3:-65072443 | None:intergenic |
| TGTCCCTAGCAAGAGCAAGG+GGG | 0.727307 | 5.3:-65071975 | None:intergenic |
| TGAGCCATCAAAATATGGGG+TGG | 0.761819 | 5.3:+65072227 | MS.gene29519:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACAGATATAAAACTTAT+AGG | - | chr5.3:65071454-65071473 | None:intergenic | 15.0% |
| !! | TAACAGATATAAAACTTATA+GGG | - | chr5.3:65071453-65071472 | None:intergenic | 15.0% |
| !!! | AAATTTCTTTATTTTGACTT+TGG | + | chr5.3:65071845-65071864 | MS.gene29519:intron | 15.0% |
| !!! | ATTTAATTTTGCCATATTAA+GGG | - | chr5.3:65071675-65071694 | None:intergenic | 15.0% |
| !!! | GAAGTCATTTAATTTTAAAA+AGG | - | chr5.3:65071578-65071597 | None:intergenic | 15.0% |
| !!! | TGTTTGCATTATTATTTTAT+TGG | - | chr5.3:65072134-65072153 | None:intergenic | 15.0% |
| !! | AATTAAATGATTTCAGATAG+AGG | + | chr5.3:65071687-65071706 | MS.gene29519:intron | 20.0% |
| !! | AATTCAATCATTTCTTTAAG+TGG | - | chr5.3:65072063-65072082 | None:intergenic | 20.0% |
| !! | ATTCAATCATTTCTTTAAGT+GGG | - | chr5.3:65072062-65072081 | None:intergenic | 20.0% |
| !!! | CATTTAATTTTGCCATATTA+AGG | - | chr5.3:65071676-65071695 | None:intergenic | 20.0% |
| !!! | TATTTCTATTTCCCTTAATA+TGG | + | chr5.3:65071661-65071680 | MS.gene29519:intron | 20.0% |
| !!! | TTATGTTCTAGAATATGTTT+GGG | + | chr5.3:65071470-65071489 | MS.gene29519:intron | 20.0% |
| ! | ATCCTTCAAAAACAAAATTG+TGG | + | chr5.3:65071819-65071838 | MS.gene29519:intron | 25.0% |
| ! | GTTCTACACAAATAAAAAAG+TGG | - | chr5.3:65071616-65071635 | None:intergenic | 25.0% |
| ! | TCACTGTTAAGAACAAAAAA+TGG | - | chr5.3:65072024-65072043 | None:intergenic | 25.0% |
| !!! | AATTTCTTTTTCGATAGAAG+TGG | - | chr5.3:65072382-65072401 | None:intergenic | 25.0% |
| !!! | ATTTCTTTTTCGATAGAAGT+GGG | - | chr5.3:65072381-65072400 | None:intergenic | 25.0% |
| !!! | GTTATGTTCTAGAATATGTT+TGG | + | chr5.3:65071469-65071488 | MS.gene29519:intron | 25.0% |
| !!! | TAAAACAGTGTTTTAAGAAG+AGG | - | chr5.3:65071795-65071814 | None:intergenic | 25.0% |
| AATCGAAAATCTGTGTTATG+TGG | - | chr5.3:65071554-65071573 | None:intergenic | 30.0% | |
| AATTCAACATAACCTGAAGT+AGG | - | chr5.3:65071879-65071898 | None:intergenic | 30.0% | |
| AGAGAAAAAGCTATATGCAA+TGG | + | chr5.3:65072419-65072438 | MS.gene29519:CDS | 30.0% | |
| ATTTGTCTTAATCTCCTTGT+GGG | - | chr5.3:65072847-65072866 | None:intergenic | 30.0% | |
| GAAAAACCAAAGTTGTTTGT+TGG | + | chr5.3:65072291-65072310 | MS.gene29519:CDS | 30.0% | |
| GCATTTCCAGTAGTATTATT+GGG | + | chr5.3:65072715-65072734 | MS.gene29519:CDS | 30.0% | |
| GGTTATGTTGAATTTCTTGA+AGG | + | chr5.3:65071885-65071904 | MS.gene29519:intron | 30.0% | |
| TATGCACATAAATACATGAC+AGG | - | chr5.3:65071638-65071657 | None:intergenic | 30.0% | |
| TATTTGTCTTAATCTCCTTG+TGG | - | chr5.3:65072848-65072867 | None:intergenic | 30.0% | |
| TGCATTTCCAGTAGTATTAT+TGG | + | chr5.3:65072714-65072733 | MS.gene29519:CDS | 30.0% | |
| TTGATGAGCCATCAAAATAT+GGG | + | chr5.3:65072223-65072242 | MS.gene29519:CDS | 30.0% | |
| TTGTTACCAACAAACAACTT+TGG | - | chr5.3:65072300-65072319 | None:intergenic | 30.0% | |
| TTGTTAGCAAAATCAACAAG+AGG | - | chr5.3:65071388-65071407 | None:intergenic | 30.0% | |
| !!! | AGCCACAATTTTGTTTTTGA+AGG | - | chr5.3:65071824-65071843 | None:intergenic | 30.0% |
| !!! | ATTTTTTCGTCTACTTGTGT+AGG | + | chr5.3:65072200-65072219 | MS.gene29519:intron | 30.0% |
| AAAATATGGGGTGGTTGTTA+TGG | + | chr5.3:65072236-65072255 | MS.gene29519:CDS | 35.0% | |
| AAACATGAACATCTTCTCCA+AGG | - | chr5.3:65072788-65072807 | None:intergenic | 35.0% | |
| AGCTTCCATAATGGTAACAA+AGG | + | chr5.3:65072104-65072123 | MS.gene29519:CDS | 35.0% | |
| ATTGAATTCCACAAATCCCA+TGG | + | chr5.3:65072075-65072094 | MS.gene29519:CDS | 35.0% | |
| ATTTCAGATAGAGGCTCTTA+AGG | + | chr5.3:65071696-65071715 | MS.gene29519:intron | 35.0% | |
| CAAAATCAACAAGAGGCTTA+GGG | - | chr5.3:65071381-65071400 | None:intergenic | 35.0% | |
| CAAAGGACTTATCACAATGA+AGG | + | chr5.3:65071300-65071319 | MS.gene29519:CDS | 35.0% | |
| GCTTACCTTTGTTACCATTA+TGG | - | chr5.3:65072112-65072131 | None:intergenic | 35.0% | |
| TCAATTCGATCCAAAACAGA+GGG | - | chr5.3:65072351-65072370 | None:intergenic | 35.0% | |
| TGATGAGCCATCAAAATATG+GGG | + | chr5.3:65072224-65072243 | MS.gene29519:CDS | 35.0% | |
| TGTGATGAGATTTACAGCAA+TGG | + | chr5.3:65072807-65072826 | MS.gene29519:CDS | 35.0% | |
| TGTTGAATGCTTTCTAAACC+CGG | + | chr5.3:65071504-65071523 | MS.gene29519:intron | 35.0% | |
| TTAATTACCAACCAGAGGTA+AGG | + | chr5.3:65071749-65071768 | MS.gene29519:intron | 35.0% | |
| TTCAATTCGATCCAAAACAG+AGG | - | chr5.3:65072352-65072371 | None:intergenic | 35.0% | |
| TTTACCTGATGCAGAATCAT+GGG | - | chr5.3:65071412-65071431 | None:intergenic | 35.0% | |
| TTTCCAGTAGTATTATTGGG+TGG | + | chr5.3:65072718-65072737 | MS.gene29519:CDS | 35.0% | |
| TTTGTCTTAATCTCCTTGTG+GGG | - | chr5.3:65072846-65072865 | None:intergenic | 35.0% | |
| ! | GTTGATGAGCCATCAAAATA+TGG | + | chr5.3:65072222-65072241 | MS.gene29519:CDS | 35.0% |
| ! | TTTTGGATCGAATTGAACTG+AGG | + | chr5.3:65072355-65072374 | MS.gene29519:CDS | 35.0% |
| ! | TTTTTCTCTGCAGCAATCTT+TGG | - | chr5.3:65072408-65072427 | None:intergenic | 35.0% |
| !! | GTTGGTAACAAAATCAATGC+TGG | + | chr5.3:65072309-65072328 | MS.gene29519:CDS | 35.0% |
| !! | TACCTCTGGTTGGTAATTAA+TGG | - | chr5.3:65071749-65071768 | None:intergenic | 35.0% |
| !!! | AAGGATTTTGAAGCAAAGCT+TGG | + | chr5.3:65071904-65071923 | MS.gene29519:CDS | 35.0% |
| AATTCCACAAATCCCATGGA+GGG | + | chr5.3:65072079-65072098 | MS.gene29519:CDS | 40.0% | |
| ATGCCACCCAATAATACTAC+TGG | - | chr5.3:65072724-65072743 | None:intergenic | 40.0% | |
| CATTGTGGGGAATGTTATTG+TGG | + | chr5.3:65072557-65072576 | MS.gene29519:CDS | 40.0% | |
| CCAAAACAGAGGGATTCAAT+AGG | - | chr5.3:65072341-65072360 | None:intergenic | 40.0% | |
| CTTTACCTGATGCAGAATCA+TGG | - | chr5.3:65071413-65071432 | None:intergenic | 40.0% | |
| GAAGAAGTCTTCTTCGAAGT+TGG | + | chr5.3:65072521-65072540 | MS.gene29519:CDS | 40.0% | |
| GATGAGATTTACAGCAATGG+TGG | + | chr5.3:65072810-65072829 | MS.gene29519:CDS | 40.0% | |
| GCAAAATCAACAAGAGGCTT+AGG | - | chr5.3:65071382-65071401 | None:intergenic | 40.0% | |
| GTGGAGAATATGACTATCCT+TGG | + | chr5.3:65072768-65072787 | MS.gene29519:CDS | 40.0% | |
| TCGCAAGAAACTGAACCATT+AGG | + | chr5.3:65071943-65071962 | MS.gene29519:CDS | 40.0% | |
| TGCAAGCATGTTTCTTGATC+CGG | - | chr5.3:65072698-65072717 | None:intergenic | 40.0% | |
| TTGGCAATACTTCCTACTTC+AGG | + | chr5.3:65071864-65071883 | MS.gene29519:intron | 40.0% | |
| TTGTTATGGAGGAGACAACA+GGG | + | chr5.3:65072250-65072269 | MS.gene29519:CDS | 40.0% | |
| ! | AAAGCATCAGAATCAGATGC+CGG | - | chr5.3:65071526-65071545 | None:intergenic | 40.0% |
| ! | CCTATTGAATCCCTCTGTTT+TGG | + | chr5.3:65072338-65072357 | MS.gene29519:CDS | 40.0% |
| !! | ACAACCACCCCATATTTTGA+TGG | - | chr5.3:65072234-65072253 | None:intergenic | 40.0% |
| !! | ATGAAGGCATTGATTCTGGT+TGG | + | chr5.3:65071316-65071335 | MS.gene29519:CDS | 40.0% |
| !! | CACAATGAAGGCATTGATTC+TGG | + | chr5.3:65071312-65071331 | MS.gene29519:CDS | 40.0% |
| !! | TGAAGGCATTGATTCTGGTT+GGG | + | chr5.3:65071317-65071336 | MS.gene29519:CDS | 40.0% |
| AAGCATCAGAATCAGATGCC+GGG | - | chr5.3:65071525-65071544 | None:intergenic | 45.0% | |
| AAGCCAGTGATATAGTCCCT+CGG | - | chr5.3:65072477-65072496 | None:intergenic | 45.0% | |
| AAGTCTTCTTCGAAGTTGGC+CGG | + | chr5.3:65072525-65072544 | MS.gene29519:CDS | 45.0% | |
| ACTGAACCATTAGGAACTGC+AGG | + | chr5.3:65071952-65071971 | MS.gene29519:CDS | 45.0% | |
| ATATGGGGTGGTTGTTATGG+AGG | + | chr5.3:65072239-65072258 | MS.gene29519:CDS | 45.0% | |
| ATTACCAACCAGAGGTAAGG+AGG | + | chr5.3:65071752-65071771 | MS.gene29519:intron | 45.0% | |
| ATTCCACAAATCCCATGGAG+GGG | + | chr5.3:65072080-65072099 | MS.gene29519:CDS | 45.0% | |
| ATTGGACCTGATGTCGCTAT+CGG | + | chr5.3:65072612-65072631 | MS.gene29519:CDS | 45.0% | |
| CAAACCCATGATTCTGCATC+AGG | + | chr5.3:65071405-65071424 | MS.gene29519:CDS | 45.0% | |
| CTATATGCAATGGTCCTTCC+TGG | + | chr5.3:65072429-65072448 | MS.gene29519:CDS | 45.0% | |
| GAAACAGCCAAAATTGGCGA+GGG | + | chr5.3:65072582-65072601 | MS.gene29519:CDS | 45.0% | |
| GAATTCCACAAATCCCATGG+AGG | + | chr5.3:65072078-65072097 | MS.gene29519:CDS | 45.0% | |
| GACAAGCTGATAGATGACTC+TGG | + | chr5.3:65071994-65072013 | MS.gene29519:CDS | 45.0% | |
| GCATTGTTGAGTCTGGTGTT+AGG | + | chr5.3:65072643-65072662 | MS.gene29519:CDS | 45.0% | |
| GGCCATTAATTACCAACCAG+AGG | + | chr5.3:65071744-65071763 | MS.gene29519:CDS | 45.0% | |
| GTGGACGAAACAGCCAAAAT+TGG | + | chr5.3:65072576-65072595 | MS.gene29519:CDS | 45.0% | |
| GTTGTTATGGAGGAGACAAC+AGG | + | chr5.3:65072249-65072268 | MS.gene29519:CDS | 45.0% | |
| TGAGCCATCAAAATATGGGG+TGG | + | chr5.3:65072227-65072246 | MS.gene29519:CDS | 45.0% | |
| TTAGGGACACTGAGTGTCAA+TGG | - | chr5.3:65071364-65071383 | None:intergenic | 45.0% | |
| ! | GATTTACAGCAATGGTGGTG+TGG | + | chr5.3:65072815-65072834 | MS.gene29519:CDS | 45.0% |
| !! | AAGGCATTGATTCTGGTTGG+GGG | + | chr5.3:65071319-65071338 | MS.gene29519:CDS | 45.0% |
| !! | GAAGGCATTGATTCTGGTTG+GGG | + | chr5.3:65071318-65071337 | MS.gene29519:CDS | 45.0% |
| ACTTCTTCCTCAGTGAGTCC+AGG | - | chr5.3:65072509-65072528 | None:intergenic | 50.0% | |
| AGTGTGATCCTCCTTACCTC+TGG | - | chr5.3:65071763-65071782 | None:intergenic | 50.0% | |
| ATAGAGGCTCTTAAGGCGAC+TGG | + | chr5.3:65071703-65071722 | MS.gene29519:CDS | 50.0% | |
| ATTGGCGAGGGATGTCTCAT+TGG | + | chr5.3:65072594-65072613 | MS.gene29519:CDS | 50.0% | |
| ATTGGGTGGCATTCCACTGT+CGG | + | chr5.3:65072732-65072751 | MS.gene29519:CDS | 50.0% | |
| CAACCGAGGGACTATATCAC+TGG | + | chr5.3:65072471-65072490 | MS.gene29519:CDS | 50.0% | |
| CAATGGTCCTTCCTGGTTTC+TGG | + | chr5.3:65072436-65072455 | MS.gene29519:CDS | 50.0% | |
| CGAAACAGCCAAAATTGGCG+AGG | + | chr5.3:65072581-65072600 | MS.gene29519:CDS | 50.0% | |
| CTTGTCCCTAGCAAGAGCAA+GGG | - | chr5.3:65071980-65071999 | None:intergenic | 50.0% | |
| TATGGAAGCTTCCCCTCCAT+GGG | - | chr5.3:65072094-65072113 | None:intergenic | 50.0% | |
| TGATCCTCCTTACCTCTGGT+TGG | - | chr5.3:65071759-65071778 | None:intergenic | 50.0% | |
| TGGAGGGGAAGCTTCCATAA+TGG | + | chr5.3:65072095-65072114 | MS.gene29519:CDS | 50.0% | |
| TGGAGTCACTGAAGTGGTAC+TGG | + | chr5.3:65071723-65071742 | MS.gene29519:CDS | 50.0% | |
| TGTCCATCCAGAAACCAGGA+AGG | - | chr5.3:65072446-65072465 | None:intergenic | 50.0% | |
| TTATGGAAGCTTCCCCTCCA+TGG | - | chr5.3:65072095-65072114 | None:intergenic | 50.0% | |
| TTGTCCCTAGCAAGAGCAAG+GGG | - | chr5.3:65071979-65071998 | None:intergenic | 50.0% | |
| ! | CCTGGTTTCTGGATGGACAT+CGG | + | chr5.3:65072447-65072466 | MS.gene29519:CDS | 50.0% |
| ! | GAGACATCCCTCGCCAATTT+TGG | - | chr5.3:65072592-65072611 | None:intergenic | 50.0% |
| ! | TTGATTCTGGTTGGGGGGTT+TGG | + | chr5.3:65071325-65071344 | MS.gene29519:CDS | 50.0% |
| !! | AGGCATTGATTCTGGTTGGG+GGG | + | chr5.3:65071320-65071339 | MS.gene29519:CDS | 50.0% |
| !! | GGGACTATATCACTGGCTTG+AGG | + | chr5.3:65072478-65072497 | MS.gene29519:CDS | 50.0% |
| CCAGACTCAACAATGCAGCC+AGG | - | chr5.3:65072639-65072658 | None:intergenic | 55.0% | |
| CCCCACAATGTTAGAGCCAC+CGG | - | chr5.3:65072547-65072566 | None:intergenic | 55.0% | |
| CCGATGTCCATCCAGAAACC+AGG | - | chr5.3:65072450-65072469 | None:intergenic | 55.0% | |
| CCTGGCTGCATTGTTGAGTC+TGG | + | chr5.3:65072636-65072655 | MS.gene29519:CDS | 55.0% | |
| CTTCCCCTCCATGGGATTTG+TGG | - | chr5.3:65072086-65072105 | None:intergenic | 55.0% | |
| GATGGACATCGGACAACCGA+GGG | + | chr5.3:65072458-65072477 | MS.gene29519:CDS | 55.0% | |
| GCACAGTAATGCGAGGAGTC+CGG | + | chr5.3:65072676-65072695 | MS.gene29519:CDS | 55.0% | |
| GCATTCCACTGTCGGGCAAT+GGG | + | chr5.3:65072740-65072759 | MS.gene29519:CDS | 55.0% | |
| GCTTGTCCCTAGCAAGAGCA+AGG | - | chr5.3:65071981-65072000 | None:intergenic | 55.0% | |
| GGCTTTACCTGGACTCACTG+AGG | + | chr5.3:65072499-65072518 | MS.gene29519:CDS | 55.0% | |
| TATGGAGGAGACAACAGGGC+AGG | + | chr5.3:65072254-65072273 | MS.gene29519:CDS | 55.0% | |
| TCTTCTTCGAAGTTGGCCGG+TGG | + | chr5.3:65072528-65072547 | MS.gene29519:CDS | 55.0% | |
| TGTCCCTAGCAAGAGCAAGG+GGG | - | chr5.3:65071978-65071997 | None:intergenic | 55.0% | |
| TTGGGTGGCATTCCACTGTC+GGG | + | chr5.3:65072733-65072752 | MS.gene29519:CDS | 55.0% | |
| ! | GGGGGTTTGGAACTAGGTTG+AGG | + | chr5.3:65071338-65071357 | MS.gene29519:CDS | 55.0% |
| ! | GGTCCTTCCTGGTTTCTGGA+TGG | + | chr5.3:65072440-65072459 | MS.gene29519:CDS | 55.0% |
| ! | TGGTTGGGGGGTTTGGAACT+AGG | + | chr5.3:65071332-65071351 | MS.gene29519:CDS | 55.0% |
| !! | CACTGGCTTGAGGCTTTACC+TGG | + | chr5.3:65072488-65072507 | MS.gene29519:CDS | 55.0% |
| !! | CCGGTGGCTCTAACATTGTG+GGG | + | chr5.3:65072544-65072563 | MS.gene29519:CDS | 55.0% |
| !! | GCCGGTGGCTCTAACATTGT+GGG | + | chr5.3:65072543-65072562 | MS.gene29519:CDS | 55.0% |
| !! | TGGTGTGGTTTTGCCCCACA+AGG | + | chr5.3:65072830-65072849 | MS.gene29519:CDS | 55.0% |
| AGGCCCCCTTGCTCTTGCTA+GGG | + | chr5.3:65071972-65071991 | MS.gene29519:CDS | 60.0% | |
| AGGGGGCCTGCAGTTCCTAA+TGG | - | chr5.3:65071961-65071980 | None:intergenic | 60.0% | |
| CCAGGACCGATAGCGACATC+AGG | - | chr5.3:65072621-65072640 | None:intergenic | 60.0% | |
| CCTGATGTCGCTATCGGTCC+TGG | + | chr5.3:65072618-65072637 | MS.gene29519:CDS | 60.0% | |
| GGATGGACATCGGACAACCG+AGG | + | chr5.3:65072457-65072476 | MS.gene29519:CDS | 60.0% | |
| GGCATTCCACTGTCGGGCAA+TGG | + | chr5.3:65072739-65072758 | MS.gene29519:CDS | 60.0% | |
| GGCGACTGGAGTCACTGAAG+TGG | + | chr5.3:65071717-65071736 | MS.gene29519:CDS | 60.0% | |
| TCGCGCTGCACAGTAATGCG+AGG | + | chr5.3:65072669-65072688 | MS.gene29519:CDS | 60.0% | |
| !! | GGCCGGTGGCTCTAACATTG+TGG | + | chr5.3:65072542-65072561 | MS.gene29519:CDS | 60.0% |
| CAGGCCCCCTTGCTCTTGCT+AGG | + | chr5.3:65071971-65071990 | MS.gene29519:CDS | 65.0% | |
| TCGAGCCCATTGCCCGACAG+TGG | - | chr5.3:65072748-65072767 | None:intergenic | 65.0% | |
| ! | TGTCGGGCAATGGGCTCGAG+TGG | + | chr5.3:65072749-65072768 | MS.gene29519:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 65071295 | 65072893 | 65071295 | ID=MS.gene29519 |
| chr5.3 | mRNA | 65071295 | 65072893 | 65071295 | ID=MS.gene29519.t1;Parent=MS.gene29519 |
| chr5.3 | exon | 65071295 | 65071426 | 65071295 | ID=MS.gene29519.t1.exon1;Parent=MS.gene29519.t1 |
| chr5.3 | CDS | 65071295 | 65071426 | 65071295 | ID=cds.MS.gene29519.t1;Parent=MS.gene29519.t1 |
| chr5.3 | exon | 65071703 | 65071765 | 65071703 | ID=MS.gene29519.t1.exon2;Parent=MS.gene29519.t1 |
| chr5.3 | CDS | 65071703 | 65071765 | 65071703 | ID=cds.MS.gene29519.t1;Parent=MS.gene29519.t1 |
| chr5.3 | exon | 65071886 | 65072125 | 65071886 | ID=MS.gene29519.t1.exon3;Parent=MS.gene29519.t1 |
| chr5.3 | CDS | 65071886 | 65072125 | 65071886 | ID=cds.MS.gene29519.t1;Parent=MS.gene29519.t1 |
| chr5.3 | exon | 65072222 | 65072893 | 65072222 | ID=MS.gene29519.t1.exon4;Parent=MS.gene29519.t1 |
| chr5.3 | CDS | 65072222 | 65072893 | 65072222 | ID=cds.MS.gene29519.t1;Parent=MS.gene29519.t1 |
| Gene Sequence |
| Protein sequence |
