Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29888.t1 | XP_003599808.2 | 76.3 | 279 | 60 | 3 | 1 | 274 | 1 | 278 | 7.70E-108 | 400.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29888.t1 | Q41160 | 52.0 | 271 | 122 | 6 | 3 | 270 | 2 | 267 | 2.1e-61 | 237.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29888.t1 | G7IXH3 | 76.3 | 279 | 60 | 3 | 1 | 274 | 1 | 278 | 5.5e-108 | 400.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene29888 | 0.837758 | 4.30E-57 | -1.69E-46 |
| MS.gene051439 | MS.gene29888 | 0.81897 | 1.48E-52 | -1.69E-46 |
| MS.gene054742 | MS.gene29888 | 0.804183 | 2.44E-49 | -1.69E-46 |
| MS.gene055240 | MS.gene29888 | 0.806607 | 7.58E-50 | -1.69E-46 |
| MS.gene055340 | MS.gene29888 | 0.815546 | 8.75E-52 | -1.69E-46 |
| MS.gene056590 | MS.gene29888 | 0.819349 | 1.22E-52 | -1.69E-46 |
| MS.gene056591 | MS.gene29888 | 0.819439 | 1.16E-52 | -1.69E-46 |
| MS.gene056694 | MS.gene29888 | 0.807111 | 5.93E-50 | -1.69E-46 |
| MS.gene058381 | MS.gene29888 | 0.811014 | 8.65E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene29888 | 0.862752 | 4.06E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29888.t1 | MTR_3g047140 | 76.344 | 279 | 60 | 3 | 1 | 274 | 1 | 278 | 1.04e-145 | 410 |
| MS.gene29888.t1 | MTR_0163s0020 | 64.621 | 277 | 92 | 2 | 1 | 273 | 2 | 276 | 1.75e-110 | 320 |
| MS.gene29888.t1 | MTR_0684s0020 | 64.621 | 277 | 92 | 2 | 1 | 273 | 1 | 275 | 2.87e-110 | 320 |
| MS.gene29888.t1 | MTR_3g054170 | 54.000 | 250 | 110 | 3 | 9 | 257 | 9 | 254 | 3.30e-82 | 248 |
| MS.gene29888.t1 | MTR_3g054180 | 53.571 | 252 | 110 | 4 | 9 | 257 | 13 | 260 | 8.87e-80 | 242 |
| MS.gene29888.t1 | MTR_1g090973 | 50.190 | 263 | 122 | 5 | 1 | 257 | 1 | 260 | 1.30e-77 | 236 |
| MS.gene29888.t1 | MTR_3g054200 | 50.800 | 250 | 118 | 3 | 9 | 257 | 9 | 254 | 2.88e-74 | 228 |
| MS.gene29888.t1 | MTR_1g090943 | 48.679 | 265 | 127 | 7 | 10 | 271 | 15 | 273 | 5.53e-69 | 215 |
| MS.gene29888.t1 | MTR_1g090960 | 45.357 | 280 | 103 | 8 | 1 | 269 | 1 | 241 | 5.37e-63 | 198 |
| MS.gene29888.t1 | MTR_3g027280 | 48.239 | 284 | 123 | 14 | 1 | 267 | 1 | 277 | 1.15e-60 | 194 |
| MS.gene29888.t1 | MTR_1g090937 | 42.908 | 282 | 134 | 13 | 1 | 267 | 1 | 270 | 1.28e-50 | 167 |
| MS.gene29888.t1 | MTR_1g090957 | 45.000 | 280 | 120 | 15 | 1 | 264 | 1 | 262 | 8.88e-50 | 165 |
| MS.gene29888.t1 | MTR_1g090930 | 41.319 | 288 | 138 | 11 | 1 | 269 | 1 | 276 | 4.49e-48 | 161 |
| MS.gene29888.t1 | MTR_4g023810 | 41.736 | 242 | 129 | 7 | 26 | 263 | 27 | 260 | 1.55e-43 | 149 |
| MS.gene29888.t1 | MTR_8g068040 | 38.996 | 259 | 136 | 10 | 10 | 255 | 10 | 259 | 4.62e-42 | 145 |
| MS.gene29888.t1 | MTR_8g023510 | 40.755 | 265 | 143 | 10 | 1 | 257 | 1 | 259 | 8.98e-42 | 145 |
| MS.gene29888.t1 | MTR_8g068030 | 37.729 | 273 | 142 | 11 | 1 | 255 | 1 | 263 | 6.44e-41 | 142 |
| MS.gene29888.t1 | MTR_8g068050 | 37.736 | 265 | 140 | 8 | 10 | 259 | 21 | 275 | 5.74e-38 | 141 |
| MS.gene29888.t1 | MTR_4g093080 | 34.601 | 263 | 154 | 8 | 8 | 258 | 4 | 260 | 3.54e-34 | 131 |
| MS.gene29888.t1 | MTR_5g031160 | 37.200 | 250 | 135 | 8 | 26 | 257 | 42 | 287 | 5.94e-34 | 124 |
| MS.gene29888.t1 | MTR_5g031090 | 34.413 | 247 | 140 | 8 | 30 | 257 | 32 | 275 | 1.96e-33 | 123 |
| MS.gene29888.t1 | MTR_8g067940 | 35.849 | 265 | 145 | 10 | 11 | 255 | 20 | 279 | 7.55e-33 | 122 |
| MS.gene29888.t1 | MTR_8g067980 | 37.083 | 240 | 128 | 11 | 32 | 255 | 25 | 257 | 8.92e-33 | 121 |
| MS.gene29888.t1 | MTR_5g031120 | 36.992 | 246 | 132 | 8 | 31 | 257 | 38 | 279 | 1.11e-32 | 121 |
| MS.gene29888.t1 | MTR_5g031030 | 34.568 | 243 | 141 | 8 | 30 | 257 | 35 | 274 | 2.49e-32 | 120 |
| MS.gene29888.t1 | MTR_5g031140 | 38.115 | 244 | 131 | 9 | 31 | 257 | 46 | 286 | 5.03e-32 | 119 |
| MS.gene29888.t1 | MTR_8g067990 | 37.759 | 241 | 125 | 12 | 32 | 255 | 25 | 257 | 5.76e-32 | 119 |
| MS.gene29888.t1 | MTR_4g056320 | 35.971 | 278 | 127 | 12 | 2 | 270 | 6 | 241 | 3.81e-31 | 117 |
| MS.gene29888.t1 | MTR_5g031100 | 35.772 | 246 | 134 | 9 | 31 | 257 | 38 | 278 | 5.67e-30 | 114 |
| MS.gene29888.t1 | MTR_7g115740 | 34.335 | 233 | 124 | 11 | 46 | 258 | 38 | 261 | 1.01e-29 | 118 |
| MS.gene29888.t1 | MTR_8g067735 | 32.103 | 271 | 165 | 9 | 9 | 267 | 25 | 288 | 1.03e-29 | 118 |
| MS.gene29888.t1 | MTR_4g093110 | 34.799 | 273 | 133 | 13 | 10 | 257 | 12 | 264 | 2.41e-28 | 114 |
| MS.gene29888.t1 | MTR_7g116130 | 32.721 | 272 | 148 | 13 | 11 | 260 | 6 | 264 | 1.65e-27 | 111 |
| MS.gene29888.t1 | MTR_4g093140 | 33.456 | 272 | 138 | 11 | 10 | 257 | 12 | 264 | 2.73e-27 | 111 |
| MS.gene29888.t1 | MTR_4g093040 | 32.794 | 247 | 144 | 9 | 11 | 240 | 13 | 254 | 3.07e-27 | 110 |
| MS.gene29888.t1 | MTR_8g067960 | 37.168 | 226 | 120 | 10 | 46 | 257 | 24 | 241 | 4.26e-26 | 103 |
| MS.gene29888.t1 | MTR_4g093040 | 39.306 | 173 | 88 | 7 | 82 | 240 | 3 | 172 | 8.93e-26 | 106 |
| MS.gene29888.t1 | MTR_1g014240 | 35.407 | 209 | 118 | 6 | 71 | 265 | 78 | 283 | 9.53e-25 | 103 |
| MS.gene29888.t1 | MTR_8g067630 | 33.040 | 227 | 131 | 8 | 31 | 243 | 30 | 249 | 1.34e-23 | 100 |
| MS.gene29888.t1 | MTR_8g067930 | 29.889 | 271 | 171 | 8 | 9 | 267 | 6 | 269 | 1.66e-23 | 100 |
| MS.gene29888.t1 | MTR_4g093070 | 34.328 | 268 | 143 | 9 | 10 | 257 | 12 | 266 | 2.21e-23 | 99.8 |
| MS.gene29888.t1 | MTR_8g067720 | 30.153 | 262 | 160 | 9 | 11 | 260 | 10 | 260 | 3.71e-23 | 99.0 |
| MS.gene29888.t1 | MTR_3g463370 | 31.734 | 271 | 129 | 9 | 10 | 269 | 9 | 234 | 1.03e-22 | 94.0 |
| MS.gene29888.t1 | MTR_8g067690 | 29.412 | 238 | 154 | 6 | 31 | 257 | 60 | 294 | 9.00e-21 | 92.0 |
| MS.gene29888.t1 | MTR_5g025020 | 33.690 | 187 | 103 | 7 | 72 | 240 | 88 | 271 | 7.27e-19 | 86.7 |
| MS.gene29888.t1 | MTR_4g093050 | 30.980 | 255 | 155 | 10 | 16 | 253 | 12 | 262 | 7.36e-19 | 86.7 |
| MS.gene29888.t1 | MTR_7g063010 | 30.544 | 239 | 127 | 11 | 42 | 254 | 32 | 257 | 9.42e-16 | 77.4 |
| MS.gene29888.t1 | MTR_1g048360 | 28.458 | 253 | 162 | 6 | 15 | 256 | 17 | 261 | 1.47e-15 | 76.6 |
| MS.gene29888.t1 | MTR_5g077100 | 32.273 | 220 | 129 | 7 | 50 | 259 | 45 | 254 | 2.58e-15 | 75.9 |
| MS.gene29888.t1 | MTR_7g062940 | 28.839 | 267 | 157 | 12 | 9 | 254 | 2 | 256 | 6.36e-14 | 72.0 |
| MS.gene29888.t1 | MTR_2g090410 | 34.694 | 147 | 85 | 6 | 46 | 186 | 34 | 175 | 6.54e-14 | 72.0 |
| MS.gene29888.t1 | MTR_7g115740 | 32.593 | 135 | 70 | 7 | 46 | 167 | 38 | 164 | 1.38e-13 | 70.9 |
| MS.gene29888.t1 | MTR_2g090250 | 26.872 | 227 | 148 | 5 | 44 | 253 | 34 | 259 | 5.44e-13 | 68.9 |
| MS.gene29888.t1 | MTR_3g068025 | 27.957 | 279 | 151 | 12 | 9 | 254 | 7 | 268 | 1.52e-12 | 67.8 |
| MS.gene29888.t1 | MTR_5g068770 | 27.570 | 214 | 132 | 7 | 72 | 267 | 81 | 289 | 1.53e-12 | 67.8 |
| MS.gene29888.t1 | MTR_7g062890 | 30.244 | 205 | 116 | 9 | 72 | 254 | 58 | 257 | 4.51e-11 | 63.2 |
| MS.gene29888.t1 | MTR_8g068050 | 28.916 | 166 | 104 | 4 | 10 | 170 | 21 | 177 | 9.42e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29888.t1 | AT5G10530 | 35.019 | 257 | 139 | 13 | 19 | 258 | 10 | 255 | 5.93e-24 | 101 |
| MS.gene29888.t1 | AT5G65600 | 34.211 | 190 | 106 | 7 | 71 | 243 | 76 | 263 | 7.99e-20 | 89.4 |
| MS.gene29888.t1 | AT5G55830 | 31.716 | 268 | 153 | 11 | 10 | 255 | 7 | 266 | 2.39e-17 | 82.0 |
| MS.gene29888.t1 | AT5G03140 | 29.245 | 212 | 135 | 6 | 50 | 251 | 51 | 257 | 2.74e-15 | 75.9 |
| MS.gene29888.t1 | AT5G06740 | 28.571 | 259 | 155 | 13 | 18 | 256 | 11 | 259 | 7.66e-14 | 71.6 |
| MS.gene29888.t1 | AT5G06740 | 28.571 | 259 | 155 | 13 | 18 | 256 | 23 | 271 | 7.78e-14 | 71.6 |
| MS.gene29888.t1 | AT4G29050 | 27.363 | 201 | 127 | 5 | 72 | 254 | 60 | 259 | 2.94e-13 | 70.1 |
| MS.gene29888.t1 | AT4G29050 | 27.363 | 201 | 127 | 5 | 72 | 254 | 74 | 273 | 3.38e-13 | 69.7 |
| MS.gene29888.t1 | AT3G55550 | 29.583 | 240 | 142 | 9 | 34 | 253 | 26 | 258 | 6.17e-13 | 68.9 |
| MS.gene29888.t1 | AT1G53080 | 29.258 | 229 | 129 | 10 | 59 | 258 | 57 | 281 | 5.13e-11 | 62.4 |
| MS.gene29888.t1 | AT4G04960 | 33.775 | 151 | 90 | 4 | 46 | 190 | 35 | 181 | 8.62e-11 | 62.4 |
Find 51 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACCAATGCTAACTGTTTC+TGG | 0.178047 | 3.3:-37874853 | None:intergenic |
| AGATTTGGAATTACACTATT+TGG | 0.215421 | 3.3:-37874532 | None:intergenic |
| ATTAACCCTTATACGATTAT+AGG | 0.243083 | 3.3:+37874367 | MS.gene29888:CDS |
| CCATCTGTGTTGTTAAGATT+TGG | 0.245140 | 3.3:-37874547 | None:intergenic |
| GCACGACCTATAATCGTATA+AGG | 0.280994 | 3.3:-37874373 | None:intergenic |
| GATCCTAACAATGCACATAT+TGG | 0.297717 | 3.3:+37874652 | MS.gene29888:CDS |
| TTGATAATTATCACAATGAT+TGG | 0.305021 | 3.3:+37874629 | MS.gene29888:CDS |
| TCAAGGGAATGCTGTCATTC+AGG | 0.316108 | 3.3:+37874318 | MS.gene29888:CDS |
| ACAGTTAGCATTGGTCTATC+TGG | 0.319313 | 3.3:+37874859 | MS.gene29888:CDS |
| ATTCAACACCCGTTCCCATT+TGG | 0.342088 | 3.3:+37874401 | MS.gene29888:CDS |
| CAACACAGATGGTGGAGATC+TGG | 0.350959 | 3.3:+37874558 | MS.gene29888:CDS |
| GGGAACGGGTGTTGAATATA+AGG | 0.357167 | 3.3:-37874395 | None:intergenic |
| TTCAACACCCGTTCCCATTT+GGG | 0.360630 | 3.3:+37874402 | MS.gene29888:CDS |
| GAAACTCACTTGGAGCTTAC+TGG | 0.370616 | 3.3:+37874340 | MS.gene29888:CDS |
| CCCCATGGGATTCACAAAAC+GGG | 0.386898 | 3.3:+37874710 | MS.gene29888:CDS |
| ACTGCTTTCAATCGATTTGT+TGG | 0.405940 | 3.3:+37874598 | MS.gene29888:CDS |
| TGAAGATGACTAACAGAAAC+TGG | 0.410445 | 3.3:-37874195 | None:intergenic |
| ATCCTAACAATGCACATATT+GGG | 0.411998 | 3.3:+37874653 | MS.gene29888:CDS |
| CCCATTTGGGATAGTGCAAC+TGG | 0.412436 | 3.3:+37874415 | MS.gene29888:CDS |
| GCCAGTTGCACTATCCCAAA+TGG | 0.414802 | 3.3:-37874416 | None:intergenic |
| GACTTAGCTGATTACATCTC+TGG | 0.418401 | 3.3:+37874277 | MS.gene29888:CDS |
| ACTAACAGAAACTGGTTAGT+TGG | 0.419127 | 3.3:-37874187 | None:intergenic |
| GAATGACAGCATTCCCTTGA+AGG | 0.432002 | 3.3:-37874315 | None:intergenic |
| TCCCCATGGGATTCACAAAA+CGG | 0.443828 | 3.3:+37874709 | MS.gene29888:CDS |
| TGATAATTATCACAATGATT+GGG | 0.445401 | 3.3:+37874630 | MS.gene29888:CDS |
| ATCCCAATATGTGCATTGTT+AGG | 0.450564 | 3.3:-37874655 | None:intergenic |
| GACCAATGCTAACTGTTTCT+GGG | 0.454186 | 3.3:-37874852 | None:intergenic |
| TGAATCCCATGGGGATGTCT+TGG | 0.462545 | 3.3:-37874701 | None:intergenic |
| GTTTCTCTCATTGACGAGAA+TGG | 0.472278 | 3.3:+37874784 | MS.gene29888:CDS |
| CTCAGTTACTAGCAAGAGAA+AGG | 0.473501 | 3.3:-37874224 | None:intergenic |
| GCACTATCCCAAATGGGAAC+GGG | 0.488710 | 3.3:-37874409 | None:intergenic |
| AACACAGATGGTGGAGATCT+GGG | 0.502642 | 3.3:+37874559 | MS.gene29888:CDS |
| CACGACCTATAATCGTATAA+GGG | 0.505615 | 3.3:-37874372 | None:intergenic |
| TTTGGAATTACACTATTTGG+TGG | 0.521911 | 3.3:-37874529 | None:intergenic |
| CCAGTTGCACTATCCCAAAT+GGG | 0.537384 | 3.3:-37874415 | None:intergenic |
| TGCACTATCCCAAATGGGAA+CGG | 0.540036 | 3.3:-37874410 | None:intergenic |
| AATGACAGCATTCCCTTGAA+GGG | 0.551329 | 3.3:-37874314 | None:intergenic |
| GGTAGTTATCCACGAGCTGA+TGG | 0.555952 | 3.3:+37874487 | MS.gene29888:CDS |
| CTCCCAGAAACAGTTAGCAT+TGG | 0.565328 | 3.3:+37874850 | MS.gene29888:CDS |
| CCAAATCTTAACAACACAGA+TGG | 0.577172 | 3.3:+37874547 | MS.gene29888:CDS |
| AATCTTAACAACACAGATGG+TGG | 0.587455 | 3.3:+37874550 | MS.gene29888:CDS |
| TGTCATTCAGGAAACTCACT+TGG | 0.593945 | 3.3:+37874330 | MS.gene29888:CDS |
| CAAATCAACGACTTGAGCAA+CGG | 0.597604 | 3.3:-37874818 | None:intergenic |
| TTCATCCAAGACATCCCCAT+GGG | 0.607724 | 3.3:+37874696 | MS.gene29888:CDS |
| AAGATAAGACCATCAGCTCG+TGG | 0.612801 | 3.3:-37874496 | None:intergenic |
| GATGTAATCAGCTAAGTCGA+AGG | 0.627754 | 3.3:-37874272 | None:intergenic |
| AAATATATGTCATTGAAACA+TGG | 0.630792 | 3.3:+37874905 | MS.gene29888:CDS |
| CCCATGGGATTCACAAAACG+GGG | 0.631871 | 3.3:+37874711 | MS.gene29888:CDS |
| AGTATGATTTATGTTCTCTG+AGG | 0.647177 | 3.3:-37874968 | None:intergenic |
| TTTCATCCAAGACATCCCCA+TGG | 0.656398 | 3.3:+37874695 | MS.gene29888:CDS |
| GCTCGTGGATAACTACCGAA+CGG | 0.706851 | 3.3:-37874481 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATGTCATTGAAACA+TGG | + | chr3.3:37874905-37874924 | MS.gene29888:CDS | 20.0% |
| !! | TGATAATTATCACAATGATT+GGG | + | chr3.3:37874630-37874649 | MS.gene29888:CDS | 20.0% |
| !!! | TTGATAATTATCACAATGAT+TGG | + | chr3.3:37874629-37874648 | MS.gene29888:CDS | 20.0% |
| ! | AAAAAACTTTAACCCTTCAA+GGG | + | chr3.3:37874302-37874321 | MS.gene29888:CDS | 25.0% |
| ! | ATTAACCCTTATACGATTAT+AGG | + | chr3.3:37874367-37874386 | MS.gene29888:CDS | 25.0% |
| !! | AGATTTGGAATTACACTATT+TGG | - | chr3.3:37874535-37874554 | None:intergenic | 25.0% |
| AGTATGATTTATGTTCTCTG+AGG | - | chr3.3:37874971-37874990 | None:intergenic | 30.0% | |
| ATCCTAACAATGCACATATT+GGG | + | chr3.3:37874653-37874672 | MS.gene29888:CDS | 30.0% | |
| GAAAAAACTTTAACCCTTCA+AGG | + | chr3.3:37874301-37874320 | MS.gene29888:CDS | 30.0% | |
| ! | TTTGGAATTACACTATTTGG+TGG | - | chr3.3:37874532-37874551 | None:intergenic | 30.0% |
| AATCTTAACAACACAGATGG+TGG | + | chr3.3:37874550-37874569 | MS.gene29888:CDS | 35.0% | |
| ACTAACAGAAACTGGTTAGT+TGG | - | chr3.3:37874190-37874209 | None:intergenic | 35.0% | |
| ATCCCAATATGTGCATTGTT+AGG | - | chr3.3:37874658-37874677 | None:intergenic | 35.0% | |
| CACGACCTATAATCGTATAA+GGG | - | chr3.3:37874375-37874394 | None:intergenic | 35.0% | |
| CCAAATCTTAACAACACAGA+TGG | + | chr3.3:37874547-37874566 | MS.gene29888:CDS | 35.0% | |
| GATCCTAACAATGCACATAT+TGG | + | chr3.3:37874652-37874671 | MS.gene29888:CDS | 35.0% | |
| TGAAGATGACTAACAGAAAC+TGG | - | chr3.3:37874198-37874217 | None:intergenic | 35.0% | |
| ! | CCATCTGTGTTGTTAAGATT+TGG | - | chr3.3:37874550-37874569 | None:intergenic | 35.0% |
| !! | ACTGCTTTCAATCGATTTGT+TGG | + | chr3.3:37874598-37874617 | MS.gene29888:CDS | 35.0% |
| AATGACAGCATTCCCTTGAA+GGG | - | chr3.3:37874317-37874336 | None:intergenic | 40.0% | |
| AGACCAATGCTAACTGTTTC+TGG | - | chr3.3:37874856-37874875 | None:intergenic | 40.0% | |
| CAAATCAACGACTTGAGCAA+CGG | - | chr3.3:37874821-37874840 | None:intergenic | 40.0% | |
| CTCAGTTACTAGCAAGAGAA+AGG | - | chr3.3:37874227-37874246 | None:intergenic | 40.0% | |
| GACTTAGCTGATTACATCTC+TGG | + | chr3.3:37874277-37874296 | MS.gene29888:CDS | 40.0% | |
| GATGTAATCAGCTAAGTCGA+AGG | - | chr3.3:37874275-37874294 | None:intergenic | 40.0% | |
| GCACGACCTATAATCGTATA+AGG | - | chr3.3:37874376-37874395 | None:intergenic | 40.0% | |
| GTTTCTCTCATTGACGAGAA+TGG | + | chr3.3:37874784-37874803 | MS.gene29888:CDS | 40.0% | |
| TGTCATTCAGGAAACTCACT+TGG | + | chr3.3:37874330-37874349 | MS.gene29888:CDS | 40.0% | |
| ! | GACCAATGCTAACTGTTTCT+GGG | - | chr3.3:37874855-37874874 | None:intergenic | 40.0% |
| !! | ACAGTTAGCATTGGTCTATC+TGG | + | chr3.3:37874859-37874878 | MS.gene29888:CDS | 40.0% |
| !! | TCTTTTTCTCTTGTGCCGTT+CGG | + | chr3.3:37874466-37874485 | MS.gene29888:CDS | 40.0% |
| !! | TTGACGTTTTTCAACTGACG+TGG | - | chr3.3:37874887-37874906 | None:intergenic | 40.0% |
| AAGATAAGACCATCAGCTCG+TGG | - | chr3.3:37874499-37874518 | None:intergenic | 45.0% | |
| ATTCAACACCCGTTCCCATT+TGG | + | chr3.3:37874401-37874420 | MS.gene29888:CDS | 45.0% | |
| CCAGTTGCACTATCCCAAAT+GGG | - | chr3.3:37874418-37874437 | None:intergenic | 45.0% | |
| CGGCACAAGAGAAAAAGAGA+AGG | - | chr3.3:37874464-37874483 | None:intergenic | 45.0% | |
| CTCCCAGAAACAGTTAGCAT+TGG | + | chr3.3:37874850-37874869 | MS.gene29888:CDS | 45.0% | |
| GAAACTCACTTGGAGCTTAC+TGG | + | chr3.3:37874340-37874359 | MS.gene29888:CDS | 45.0% | |
| GAATGACAGCATTCCCTTGA+AGG | - | chr3.3:37874318-37874337 | None:intergenic | 45.0% | |
| TCAAGGGAATGCTGTCATTC+AGG | + | chr3.3:37874318-37874337 | MS.gene29888:CDS | 45.0% | |
| TCCCCATGGGATTCACAAAA+CGG | + | chr3.3:37874709-37874728 | MS.gene29888:CDS | 45.0% | |
| TGCACTATCCCAAATGGGAA+CGG | - | chr3.3:37874413-37874432 | None:intergenic | 45.0% | |
| TTCAACACCCGTTCCCATTT+GGG | + | chr3.3:37874402-37874421 | MS.gene29888:CDS | 45.0% | |
| TTCATCCAAGACATCCCCAT+GGG | + | chr3.3:37874696-37874715 | MS.gene29888:CDS | 45.0% | |
| TTTCATCCAAGACATCCCCA+TGG | + | chr3.3:37874695-37874714 | MS.gene29888:CDS | 45.0% | |
| !! | AACACAGATGGTGGAGATCT+GGG | + | chr3.3:37874559-37874578 | MS.gene29888:CDS | 45.0% |
| !! | GGGAACGGGTGTTGAATATA+AGG | - | chr3.3:37874398-37874417 | None:intergenic | 45.0% |
| CCCATGGGATTCACAAAACG+GGG | + | chr3.3:37874711-37874730 | MS.gene29888:CDS | 50.0% | |
| CCCCATGGGATTCACAAAAC+GGG | + | chr3.3:37874710-37874729 | MS.gene29888:CDS | 50.0% | |
| GCACTATCCCAAATGGGAAC+GGG | - | chr3.3:37874412-37874431 | None:intergenic | 50.0% | |
| GCCAGTTGCACTATCCCAAA+TGG | - | chr3.3:37874419-37874438 | None:intergenic | 50.0% | |
| GCTCGTGGATAACTACCGAA+CGG | - | chr3.3:37874484-37874503 | None:intergenic | 50.0% | |
| GGTAGTTATCCACGAGCTGA+TGG | + | chr3.3:37874487-37874506 | MS.gene29888:CDS | 50.0% | |
| TGAATCCCATGGGGATGTCT+TGG | - | chr3.3:37874704-37874723 | None:intergenic | 50.0% | |
| ! | ACCCCGTTTTGTGAATCCCA+TGG | - | chr3.3:37874715-37874734 | None:intergenic | 50.0% |
| ! | CCCATTTGGGATAGTGCAAC+TGG | + | chr3.3:37874415-37874434 | MS.gene29888:CDS | 50.0% |
| ! | CCCCGTTTTGTGAATCCCAT+GGG | - | chr3.3:37874714-37874733 | None:intergenic | 50.0% |
| ! | CCCGTTTTGTGAATCCCATG+GGG | - | chr3.3:37874713-37874732 | None:intergenic | 50.0% |
| !! | CAACACAGATGGTGGAGATC+TGG | + | chr3.3:37874558-37874577 | MS.gene29888:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 37874175 | 37874999 | 37874175 | ID=MS.gene29888 |
| chr3.3 | mRNA | 37874175 | 37874999 | 37874175 | ID=MS.gene29888.t1;Parent=MS.gene29888 |
| chr3.3 | exon | 37874175 | 37874999 | 37874175 | ID=MS.gene29888.t1.exon1;Parent=MS.gene29888.t1 |
| chr3.3 | CDS | 37874175 | 37874999 | 37874175 | ID=cds.MS.gene29888.t1;Parent=MS.gene29888.t1 |
| Gene Sequence |
| Protein sequence |
