Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29958.t1 | XP_003598052.1 | 96.2 | 184 | 7 | 0 | 1 | 184 | 140 | 323 | 7.50E-99 | 369.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29958.t1 | G7J060 | 96.2 | 184 | 7 | 0 | 1 | 184 | 140 | 323 | 5.4e-99 | 369.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050404 | MS.gene29958 | 0.801639 | 8.19E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene29958 | 0.807666 | 4.52E-50 | -1.69E-46 |
| MS.gene051171 | MS.gene29958 | 0.851188 | 1.04E-60 | -1.69E-46 |
| MS.gene051240 | MS.gene29958 | 0.810966 | 8.86E-51 | -1.69E-46 |
| MS.gene051242 | MS.gene29958 | 0.850741 | 1.40E-60 | -1.69E-46 |
| MS.gene051244 | MS.gene29958 | 0.833165 | 6.24E-56 | -1.69E-46 |
| MS.gene053330 | MS.gene29958 | 0.837652 | 4.58E-57 | -1.69E-46 |
| MS.gene053971 | MS.gene29958 | 0.87505 | 4.18E-68 | -1.69E-46 |
| MS.gene055370 | MS.gene29958 | 0.833866 | 4.17E-56 | -1.69E-46 |
| MS.gene056633 | MS.gene29958 | 0.877585 | 5.59E-69 | -1.69E-46 |
| MS.gene056664 | MS.gene29958 | 0.811885 | 5.60E-51 | -1.69E-46 |
| MS.gene056796 | MS.gene29958 | 0.811455 | 6.94E-51 | -1.69E-46 |
| MS.gene057196 | MS.gene29958 | 0.822218 | 2.66E-53 | -1.69E-46 |
| MS.gene058233 | MS.gene29958 | 0.850299 | 1.86E-60 | -1.69E-46 |
| MS.gene058746 | MS.gene29958 | 0.875953 | 2.05E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29958.t1 | MTR_3g005720 | 96.196 | 184 | 7 | 0 | 1 | 184 | 140 | 323 | 1.44e-130 | 369 |
| MS.gene29958.t1 | MTR_1g059970 | 40.556 | 180 | 99 | 4 | 4 | 180 | 158 | 332 | 9.53e-38 | 132 |
| MS.gene29958.t1 | MTR_1g059970 | 44.275 | 131 | 65 | 4 | 4 | 131 | 160 | 285 | 9.61e-28 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29958.t1 | AT4G10000 | 72.928 | 181 | 49 | 0 | 1 | 181 | 149 | 329 | 1.09e-97 | 286 |
| MS.gene29958.t1 | AT4G10000 | 72.928 | 181 | 49 | 0 | 1 | 181 | 149 | 329 | 1.09e-97 | 286 |
| MS.gene29958.t1 | AT5G03880 | 43.575 | 179 | 97 | 3 | 4 | 181 | 164 | 339 | 7.75e-44 | 149 |
Find 44 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATAAATTCTTACTTCTT+TGG | 0.175708 | 3.4:+1515856 | None:intergenic |
| TGACATTGTGGGAACGTTCT+AGG | 0.276954 | 3.4:-1516559 | MS.gene29958:CDS |
| GAGAACAGCTCCAGCTTTCT+AGG | 0.290385 | 3.4:+1516524 | None:intergenic |
| AAGTTACTCTTGGATGCTTC+TGG | 0.294502 | 3.4:-1515881 | MS.gene29958:CDS |
| CTGTGTCTTACAGAACCTTT+AGG | 0.352920 | 3.4:+1518049 | None:intergenic |
| GAATAGGTTTCGAACAAATA+AGG | 0.364256 | 3.4:+1515371 | None:intergenic |
| TAGGTTTATCCTTGTCCTAA+AGG | 0.380454 | 3.4:-1518064 | MS.gene29958:CDS |
| CTATAAATTATCCGACGAAT+AGG | 0.383781 | 3.4:+1515355 | None:intergenic |
| AAATACTTGTTCGAGCGATA+TGG | 0.384640 | 3.4:-1516760 | MS.gene29958:CDS |
| AGAGAGGTGGTCAGAGAAAC+TGG | 0.386180 | 3.4:-1518028 | MS.gene29958:CDS |
| CTACCTGCTCGTAGAATTGT+TGG | 0.397799 | 3.4:+1516587 | None:intergenic |
| TTCCTCATTGATCAAAATAG+TGG | 0.408697 | 3.4:-1517350 | MS.gene29958:CDS |
| TTACTTACTGCTTTCATACA+TGG | 0.414336 | 3.4:+1517322 | None:intergenic |
| CACAACACTGGATTTCAATC+TGG | 0.442131 | 3.4:-1515413 | MS.gene29958:CDS |
| CCTTACATTCTTCAAAATGT+AGG | 0.449859 | 3.4:-1515923 | MS.gene29958:CDS |
| AGAAGGGAGAAGTCCATCAT+TGG | 0.461743 | 3.4:-1516737 | MS.gene29958:CDS |
| GCGTGAGGCATTATGCGAAT+TGG | 0.471814 | 3.4:-1515951 | MS.gene29958:CDS |
| GACATTGTGGGAACGTTCTA+GGG | 0.479537 | 3.4:-1516558 | MS.gene29958:CDS |
| AGCTCCAGCTTTCTAGGAGG+AGG | 0.503068 | 3.4:+1516530 | None:intergenic |
| CTCTCTAAAAGTCCCAATGA+TGG | 0.508740 | 3.4:+1516724 | None:intergenic |
| GAAGGGAGAAGTCCATCATT+GGG | 0.519221 | 3.4:-1516736 | MS.gene29958:CDS |
| TACTTTGTTGATCACAACAC+TGG | 0.521271 | 3.4:-1515425 | MS.gene29958:CDS |
| ACGACGAACGAAGTTACTCT+TGG | 0.522523 | 3.4:-1515891 | MS.gene29958:CDS |
| ATTCTTCAAAATGTAGGAGA+AGG | 0.523180 | 3.4:-1515917 | MS.gene29958:CDS |
| TGAACCTCCTCCTAGAAAGC+TGG | 0.527393 | 3.4:-1516534 | MS.gene29958:CDS |
| GTGTTGTGATCAACAAAGTA+AGG | 0.529816 | 3.4:+1515428 | None:intergenic |
| TTGTTCGAGCGATATGGAGA+AGG | 0.531686 | 3.4:-1516754 | MS.gene29958:CDS |
| TTGCGCAGCACTATCTTCAC+TGG | 0.541182 | 3.4:-1516617 | MS.gene29958:intron |
| ACAATTCTACGAGCAGGTAG+AGG | 0.551144 | 3.4:-1516584 | MS.gene29958:CDS |
| AGGTAGAGGAATGACATTGT+GGG | 0.575168 | 3.4:-1516570 | MS.gene29958:CDS |
| ATGCCAACAATTCTACGAGC+AGG | 0.576106 | 3.4:-1516590 | MS.gene29958:CDS |
| TTTGTTCGAAACCTATTCGT+CGG | 0.576535 | 3.4:-1515366 | MS.gene29958:CDS |
| CTTACAGAACCTTTAGGACA+AGG | 0.591800 | 3.4:+1518055 | None:intergenic |
| TGAACTAGATCTTTCTGTCG+AGG | 0.600096 | 3.4:-1518498 | MS.gene29958:intron |
| AGAAAGATCTAGTTCAGTCA+TGG | 0.609780 | 3.4:+1518505 | None:intergenic |
| TGTTCGAGCGATATGGAGAA+GGG | 0.616808 | 3.4:-1516753 | MS.gene29958:CDS |
| CAGGTAGAGGAATGACATTG+TGG | 0.629598 | 3.4:-1516571 | MS.gene29958:CDS |
| GAATGCTCGTATTGTGCGTG+AGG | 0.629611 | 3.4:-1515966 | MS.gene29958:CDS |
| AACAGCTCCAGCTTTCTAGG+AGG | 0.635879 | 3.4:+1516527 | None:intergenic |
| GCAGCACTATCTTCACTGGA+TGG | 0.651360 | 3.4:-1516613 | MS.gene29958:intron |
| TTCTGTAAGACACAGAGAGG+TGG | 0.659198 | 3.4:-1518041 | MS.gene29958:CDS |
| GTTCTCCTATGAAAATAACC+CGG | 0.677731 | 3.4:-1516507 | MS.gene29958:intron |
| AGGTTCTGTAAGACACAGAG+AGG | 0.695163 | 3.4:-1518044 | MS.gene29958:CDS |
| GAGGTGGTCAGAGAAACTGG+TGG | 0.779819 | 3.4:-1518025 | MS.gene29958:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAGTTAAAATCATTAAAA+TGG | + | chr3.4:1517023-1517042 | None:intergenic | 10.0% |
| !!! | ACAAAATATTTTAAAAGATA+AGG | + | chr3.4:1516444-1516463 | None:intergenic | 10.0% |
| !!! | ATTAAGAAAAAAATAGATTT+TGG | + | chr3.4:1516829-1516848 | None:intergenic | 10.0% |
| !!! | TATATTTTCTCAAATTATTA+CGG | + | chr3.4:1515575-1515594 | None:intergenic | 10.0% |
| !! | AATAATTGTTGAATAATACT+TGG | - | chr3.4:1518303-1518322 | MS.gene29958:intron | 15.0% |
| !! | TTTGAGAAAATATAAGTAAT+TGG | - | chr3.4:1515581-1515600 | MS.gene29958:intron | 15.0% |
| !!! | AAAATTGATTTTGAATGAAT+CGG | - | chr3.4:1517455-1517474 | MS.gene29958:intron | 15.0% |
| !!! | AAATGATTTTTTTAGCAAAA+TGG | + | chr3.4:1516769-1516788 | None:intergenic | 15.0% |
| !!! | ATATTTTCTCAAATTATTAC+GGG | + | chr3.4:1515574-1515593 | None:intergenic | 15.0% |
| !!! | CAATAAAATTCTTTTGAAAT+TGG | + | chr3.4:1515684-1515703 | None:intergenic | 15.0% |
| !! | AATGTGAAATGATTTATGAT+TGG | - | chr3.4:1517483-1517502 | MS.gene29958:intron | 20.0% |
| !! | AGAGATAAGAAAAAAGATAA+AGG | - | chr3.4:1516012-1516031 | MS.gene29958:intron | 20.0% |
| !! | CAAATAAATTCTTACTTCTT+TGG | + | chr3.4:1518005-1518024 | None:intergenic | 20.0% |
| !! | CAACAATTATTAAACATAAC+TGG | + | chr3.4:1518294-1518313 | None:intergenic | 20.0% |
| !! | CAATATAAGTAGAAAGAATA+AGG | + | chr3.4:1516577-1516596 | None:intergenic | 20.0% |
| !! | GAGATAAGAAAAAAGATAAA+GGG | - | chr3.4:1516013-1516032 | MS.gene29958:intron | 20.0% |
| !! | TGGTTCAATTTCAATAAAAA+AGG | + | chr3.4:1518244-1518263 | None:intergenic | 20.0% |
| !! | TTTCTACTTATATTGTTTAG+TGG | - | chr3.4:1516582-1516601 | MS.gene29958:CDS | 20.0% |
| !!! | AAAAACAAAAGCTGTTTTTT+TGG | - | chr3.4:1515948-1515967 | MS.gene29958:CDS | 20.0% |
| !!! | AAAACAAAAGCTGTTTTTTT+GGG | - | chr3.4:1515949-1515968 | MS.gene29958:CDS | 20.0% |
| !!! | TCTATTTTTTTCTTAATGCA+AGG | - | chr3.4:1516832-1516851 | MS.gene29958:intron | 20.0% |
| !!! | TGAAATAGATTTTCATTTTG+AGG | + | chr3.4:1516796-1516815 | None:intergenic | 20.0% |
| !!! | TTTAGTTCTTCTAAAATGAA+TGG | + | chr3.4:1518264-1518283 | None:intergenic | 20.0% |
| ! | ACCAACAGTAGTAATATTAA+GGG | + | chr3.4:1515766-1515785 | None:intergenic | 25.0% |
| ! | ATAGAAGAACATTATCTTAC+CGG | + | chr3.4:1517373-1517392 | None:intergenic | 25.0% |
| ! | ATCATTAAAATGGACCATTA+AGG | + | chr3.4:1517013-1517032 | None:intergenic | 25.0% |
| ! | ATTCTAACTAACTATTCTCA+GGG | - | chr3.4:1516256-1516275 | MS.gene29958:intron | 25.0% |
| ! | GTAAACAACTATGAAAATGA+AGG | + | chr3.4:1516623-1516642 | None:intergenic | 25.0% |
| ! | GTTTCATACTTAATAGCATA+AGG | + | chr3.4:1515506-1515525 | None:intergenic | 25.0% |
| ! | TCATTAAAATGGACCATTAA+GGG | + | chr3.4:1517012-1517031 | None:intergenic | 25.0% |
| ! | TCATTCTCTTATAAATCATG+TGG | - | chr3.4:1518206-1518225 | MS.gene29958:intron | 25.0% |
| ! | TGATTTATAAGAGAATGAAG+TGG | + | chr3.4:1518204-1518223 | None:intergenic | 25.0% |
| ! | TGGATTTAAATGGAATAGAA+CGG | - | chr3.4:1516104-1516123 | MS.gene29958:intron | 25.0% |
| ! | TTCATAGTTGTTTACTAGTT+TGG | - | chr3.4:1516628-1516647 | MS.gene29958:intron | 25.0% |
| ! | TTGAGTGTAAAAATCACATT+TGG | - | chr3.4:1517534-1517553 | MS.gene29958:intron | 25.0% |
| !! | AAAAATACTTTGTGATGGAA+TGG | - | chr3.4:1516079-1516098 | MS.gene29958:intron | 25.0% |
| !! | AATGATTTATGGTTGACTTA+TGG | - | chr3.4:1515731-1515750 | MS.gene29958:intron | 25.0% |
| !! | ATTTTCAACATACTCATTCT+TGG | - | chr3.4:1516405-1516424 | MS.gene29958:intron | 25.0% |
| !! | TTAAGATAGTTGATTCTACT+CGG | + | chr3.4:1517806-1517825 | None:intergenic | 25.0% |
| !!! | AAACAAAAGCTGTTTTTTTG+GGG | - | chr3.4:1515950-1515969 | MS.gene29958:CDS | 25.0% |
| !!! | AAATTCTGGATTTTTTTTCC+CGG | - | chr3.4:1518078-1518097 | MS.gene29958:intron | 25.0% |
| !!! | AAGATTTGCTATAATTGTCA+TGG | - | chr3.4:1517768-1517787 | MS.gene29958:intron | 25.0% |
| !!! | AGAGAGGTATACATATTTTA+GGG | - | chr3.4:1517151-1517170 | MS.gene29958:intron | 25.0% |
| !!! | ATGCATTTGATTTGTAACAA+TGG | - | chr3.4:1517726-1517745 | MS.gene29958:intron | 25.0% |
| !!! | ATTCCATCACAAAGTATTTT+TGG | + | chr3.4:1516080-1516099 | None:intergenic | 25.0% |
| !!! | TAGAGAGGTATACATATTTT+AGG | - | chr3.4:1517150-1517169 | MS.gene29958:intron | 25.0% |
| !!! | TAGTTAGAATGGCTATTTTT+GGG | + | chr3.4:1516246-1516265 | None:intergenic | 25.0% |
| !!! | TATCTTTTTTCTTATCTCTC+TGG | + | chr3.4:1516011-1516030 | None:intergenic | 25.0% |
| !!! | TGCATTTGATTTGTAACAAT+GGG | - | chr3.4:1517727-1517746 | MS.gene29958:intron | 25.0% |
| !!! | TTAATTTCTCGCTTTGTTTT+GGG | - | chr3.4:1517822-1517841 | MS.gene29958:intron | 25.0% |
| !!! | TTAGTTAGAATGGCTATTTT+TGG | + | chr3.4:1516247-1516266 | None:intergenic | 25.0% |
| !!! | TTTTGCTTATTTTCCAAAGT+TGG | - | chr3.4:1518055-1518074 | MS.gene29958:CDS | 25.0% |
| AAATCCAGAATTTCCAACTT+TGG | + | chr3.4:1518071-1518090 | None:intergenic | 30.0% | |
| AACAACTATGAAAATGAAGG+TGG | + | chr3.4:1516620-1516639 | None:intergenic | 30.0% | |
| ACCACTTTCATATTCATGTA+AGG | + | chr3.4:1518398-1518417 | None:intergenic | 30.0% | |
| ATGAAAATGAAGGTGGTTTA+TGG | + | chr3.4:1516613-1516632 | None:intergenic | 30.0% | |
| ATGAAAGCAGTAAGTAAGAA+AGG | - | chr3.4:1516542-1516561 | MS.gene29958:CDS | 30.0% | |
| ATTCTTCAAAATGTAGGAGA+AGG | - | chr3.4:1517941-1517960 | MS.gene29958:intron | 30.0% | |
| CACCAACAGTAGTAATATTA+AGG | + | chr3.4:1515767-1515786 | None:intergenic | 30.0% | |
| CATTCTAACTAACTATTCTC+AGG | - | chr3.4:1516255-1516274 | MS.gene29958:intron | 30.0% | |
| CCTTACATTCTTCAAAATGT+AGG | - | chr3.4:1517935-1517954 | MS.gene29958:intron | 30.0% | |
| CTATAAATTATCCGACGAAT+AGG | + | chr3.4:1518506-1518525 | None:intergenic | 30.0% | |
| CTGAGAATAGTTAGTTAGAA+TGG | + | chr3.4:1516257-1516276 | None:intergenic | 30.0% | |
| CTTCCAAAAATACTTTGTGA+TGG | - | chr3.4:1516074-1516093 | MS.gene29958:intron | 30.0% | |
| GAATAGGTTTCGAACAAATA+AGG | + | chr3.4:1518490-1518509 | None:intergenic | 30.0% | |
| GTGACTTGAGAAATGATTTA+TGG | - | chr3.4:1515720-1515739 | MS.gene29958:intron | 30.0% | |
| GTTCTTCTATCTCCAATTTA+TGG | - | chr3.4:1517383-1517402 | MS.gene29958:intron | 30.0% | |
| TAAATCATTTCTCAAGTCAC+AGG | + | chr3.4:1515720-1515739 | None:intergenic | 30.0% | |
| TAGAAGAACATTATCTTACC+GGG | + | chr3.4:1517372-1517391 | None:intergenic | 30.0% | |
| TATGTGTCTCAAATCACTTT+CGG | - | chr3.4:1517585-1517604 | MS.gene29958:intron | 30.0% | |
| TCCCTTAATATTACTACTGT+TGG | - | chr3.4:1515762-1515781 | MS.gene29958:intron | 30.0% | |
| TCCTTACATGAATATGAAAG+TGG | - | chr3.4:1518394-1518413 | MS.gene29958:intron | 30.0% | |
| TTACTTACTGCTTTCATACA+TGG | + | chr3.4:1516539-1516558 | None:intergenic | 30.0% | |
| TTCCTCATTGATCAAAATAG+TGG | - | chr3.4:1516508-1516527 | MS.gene29958:CDS | 30.0% | |
| TTGAATGTTGTGTACTTTCT+TGG | - | chr3.4:1517051-1517070 | MS.gene29958:intron | 30.0% | |
| TTTGCATTTCCTCCATAAAT+TGG | + | chr3.4:1517398-1517417 | None:intergenic | 30.0% | |
| ! | AGAAAGTACACAACATTCAA+TGG | + | chr3.4:1517051-1517070 | None:intergenic | 30.0% |
| ! | AGCGTTTTTCTGATATTTCT+TGG | - | chr3.4:1518346-1518365 | MS.gene29958:intron | 30.0% |
| ! | CATAATGTTGTCCTTTTTGT+AGG | - | chr3.4:1516479-1516498 | MS.gene29958:intron | 30.0% |
| ! | CTATTGAAGTTGTTATTCCA+GGG | + | chr3.4:1516342-1516361 | None:intergenic | 30.0% |
| ! | TAACAATGGGGTTAGTATTT+AGG | - | chr3.4:1517740-1517759 | MS.gene29958:intron | 30.0% |
| ! | TAAGATAGTTGATTCTACTC+GGG | + | chr3.4:1517805-1517824 | None:intergenic | 30.0% |
| ! | TTTTCCAAAGTTGGAAATTC+TGG | - | chr3.4:1518064-1518083 | MS.gene29958:CDS | 30.0% |
| !! | CCTACATTTTGAAGAATGTA+AGG | + | chr3.4:1517938-1517957 | None:intergenic | 30.0% |
| !! | CTACTGTTGGTGTTATTAAT+AGG | - | chr3.4:1515775-1515794 | MS.gene29958:intron | 30.0% |
| !! | GCATTTGATTTGTAACAATG+GGG | - | chr3.4:1517728-1517747 | MS.gene29958:intron | 30.0% |
| !! | TGAATGTGTTATTTCGATCA+AGG | + | chr3.4:1517689-1517708 | None:intergenic | 30.0% |
| !!! | AACAAAAGCTGTTTTTTTGG+GGG | - | chr3.4:1515951-1515970 | MS.gene29958:CDS | 30.0% |
| !!! | CTATTTTGATCAATGAGGAA+AGG | + | chr3.4:1516508-1516527 | None:intergenic | 30.0% |
| !!! | CTTAATTTCTCGCTTTGTTT+TGG | - | chr3.4:1517821-1517840 | MS.gene29958:intron | 30.0% |
| !!! | CTTTGTCTGTTTGGTTTTTT+TGG | - | chr3.4:1517429-1517448 | MS.gene29958:intron | 30.0% |
| !!! | TAATTTCTCGCTTTGTTTTG+GGG | - | chr3.4:1517823-1517842 | MS.gene29958:intron | 30.0% |
| AAAACAAACATGCCCTAAGA+AGG | + | chr3.4:1516660-1516679 | None:intergenic | 35.0% | |
| AAATACTTGTTCGAGCGATA+TGG | - | chr3.4:1517098-1517117 | MS.gene29958:intron | 35.0% | |
| AAGGAATGATAAAGAACCCA+AGG | + | chr3.4:1517657-1517676 | None:intergenic | 35.0% | |
| AGAAAAACGCTAGCAAGATA+CGG | + | chr3.4:1518337-1518356 | None:intergenic | 35.0% | |
| AGGAAAGGAAACCTACAAAA+AGG | + | chr3.4:1516493-1516512 | None:intergenic | 35.0% | |
| ATGAAACACTGACAAAGACA+TGG | - | chr3.4:1515519-1515538 | MS.gene29958:intron | 35.0% | |
| CCTGGAATAACAACTTCAAT+AGG | - | chr3.4:1516340-1516359 | MS.gene29958:intron | 35.0% | |
| CTTCTATCTCCAATTTATGG+AGG | - | chr3.4:1517386-1517405 | MS.gene29958:intron | 35.0% | |
| GTACAAATGTAGTGATATGC+CGG | + | chr3.4:1518100-1518119 | None:intergenic | 35.0% | |
| GTGTTGTGATCAACAAAGTA+AGG | + | chr3.4:1518433-1518452 | None:intergenic | 35.0% | |
| GTTCTCCTATGAAAATAACC+CGG | - | chr3.4:1517351-1517370 | MS.gene29958:CDS | 35.0% | |
| TACAAATGTAGTGATATGCC+GGG | + | chr3.4:1518099-1518118 | None:intergenic | 35.0% | |
| TACTTTGTTGATCACAACAC+TGG | - | chr3.4:1518433-1518452 | MS.gene29958:intron | 35.0% | |
| TAGGTTTATCCTTGTCCTAA+AGG | - | chr3.4:1515794-1515813 | MS.gene29958:intron | 35.0% | |
| TCGATCAAGGTTCAATTGAA+AGG | + | chr3.4:1517676-1517695 | None:intergenic | 35.0% | |
| TTGTCTATGTTCTCAACCTT+GGG | - | chr3.4:1517638-1517657 | MS.gene29958:intron | 35.0% | |
| TTGTGTATACGATGAATCTG+CGG | + | chr3.4:1515390-1515409 | None:intergenic | 35.0% | |
| TTTGTCTATGTTCTCAACCT+TGG | - | chr3.4:1517637-1517656 | MS.gene29958:intron | 35.0% | |
| TTTGTTCGAAACCTATTCGT+CGG | - | chr3.4:1518492-1518511 | MS.gene29958:intron | 35.0% | |
| ! | CCTATTGAAGTTGTTATTCC+AGG | + | chr3.4:1516343-1516362 | None:intergenic | 35.0% |
| ! | CTTTCTTGGTTTCTTGTTGT+AGG | - | chr3.4:1517065-1517084 | MS.gene29958:intron | 35.0% |
| ! | GAATGAAGTGGATTTCAACA+AGG | + | chr3.4:1518192-1518211 | None:intergenic | 35.0% |
| ! | TGGAATGGAGTGGATTTAAA+TGG | - | chr3.4:1516094-1516113 | MS.gene29958:intron | 35.0% |
| ! | TTCTTAGGGCATGTTTGTTT+TGG | - | chr3.4:1516659-1516678 | MS.gene29958:intron | 35.0% |
| !! | AGTTTGGATTAGTCCTTCTT+AGG | - | chr3.4:1516644-1516663 | MS.gene29958:intron | 35.0% |
| !! | GAGGTATACATATTTTAGGG+AGG | - | chr3.4:1517154-1517173 | MS.gene29958:intron | 35.0% |
| !! | GTTTGGATTAGTCCTTCTTA+GGG | - | chr3.4:1516645-1516664 | MS.gene29958:intron | 35.0% |
| !! | TCTTACCGGGTTATTTTCAT+AGG | + | chr3.4:1517359-1517378 | None:intergenic | 35.0% |
| !! | TTTTATATGCTGATTGACCC+TGG | - | chr3.4:1516322-1516341 | MS.gene29958:intron | 35.0% |
| !! | TTTTGGGTGGTTAGTGTTAA+AGG | + | chr3.4:1516230-1516249 | None:intergenic | 35.0% |
| !!! | CACCACTATTTTGATCAATG+AGG | + | chr3.4:1516513-1516532 | None:intergenic | 35.0% |
| !!! | TTAGAATGGCTATTTTTGGG+TGG | + | chr3.4:1516243-1516262 | None:intergenic | 35.0% |
| !!! | TTTTTTTGGGGGTATCTGTT+AGG | - | chr3.4:1515962-1515981 | MS.gene29958:CDS | 35.0% |
| AAGCCAAATCATCCTTGAGA+AGG | + | chr3.4:1518135-1518154 | None:intergenic | 40.0% | |
| AAGTTACTCTTGGATGCTTC+TGG | - | chr3.4:1517977-1517996 | MS.gene29958:intron | 40.0% | |
| ACATAGACAAAGTGTGCGTT+TGG | + | chr3.4:1517628-1517647 | None:intergenic | 40.0% | |
| ACGGAGTTATCACTCTATGA+TGG | - | chr3.4:1516123-1516142 | MS.gene29958:intron | 40.0% | |
| AGCCAAATCATCCTTGAGAA+GGG | + | chr3.4:1518134-1518153 | None:intergenic | 40.0% | |
| AGGTAGAGGAATGACATTGT+GGG | - | chr3.4:1517288-1517307 | MS.gene29958:intron | 40.0% | |
| ATATGAAAGTGGTTCTCTGC+AGG | - | chr3.4:1518405-1518424 | MS.gene29958:intron | 40.0% | |
| CAACATTCACAAATTGGCCA+GGG | + | chr3.4:1516188-1516207 | None:intergenic | 40.0% | |
| CACAACACTGGATTTCAATC+TGG | - | chr3.4:1518445-1518464 | MS.gene29958:intron | 40.0% | |
| CACTACATTTGTACCGTACT+AGG | - | chr3.4:1518106-1518125 | MS.gene29958:intron | 40.0% | |
| CGCAAGAGTGAGTTATTATG+AGG | + | chr3.4:1517226-1517245 | None:intergenic | 40.0% | |
| CTGTGTCTTACAGAACCTTT+AGG | + | chr3.4:1515812-1515831 | None:intergenic | 40.0% | |
| GAGGAAATGCAAACATGTAG+AGG | - | chr3.4:1517405-1517424 | MS.gene29958:intron | 40.0% | |
| TGAAACAAACGCACCCTTAA+TGG | - | chr3.4:1516996-1517015 | MS.gene29958:intron | 40.0% | |
| TGAACTAGATCTTTCTGTCG+AGG | - | chr3.4:1515360-1515379 | MS.gene29958:CDS | 40.0% | |
| TGCAGCCAACATTCACAAAT+TGG | + | chr3.4:1516194-1516213 | None:intergenic | 40.0% | |
| TGTAGAGGACTTTGTCTGTT+TGG | - | chr3.4:1517420-1517439 | MS.gene29958:intron | 40.0% | |
| ! | AAAGTGTGCGTTTGGTTTCA+CGG | + | chr3.4:1517620-1517639 | None:intergenic | 40.0% |
| ! | CTCTCTAAAAGTCCCAATGA+TGG | + | chr3.4:1517137-1517156 | None:intergenic | 40.0% |
| ! | GGATTTTATGACAACTTCCC+TGG | - | chr3.4:1516168-1516187 | MS.gene29958:intron | 40.0% |
| ! | TACTTTGTGATGGAATGGAG+TGG | - | chr3.4:1516084-1516103 | MS.gene29958:intron | 40.0% |
| !! | ATTGAAGGCGTTTCAAGTGT+CGG | + | chr3.4:1515640-1515659 | None:intergenic | 40.0% |
| !! | CATCATTGGGACTTTTAGAG+AGG | - | chr3.4:1517135-1517154 | MS.gene29958:intron | 40.0% |
| !! | CTTACAGAACCTTTAGGACA+AGG | + | chr3.4:1515806-1515825 | None:intergenic | 40.0% |
| ACAATTCTACGAGCAGGTAG+AGG | - | chr3.4:1517274-1517293 | MS.gene29958:intron | 45.0% | |
| ACGACGAACGAAGTTACTCT+TGG | - | chr3.4:1517967-1517986 | MS.gene29958:intron | 45.0% | |
| AGAAGGGAGAAGTCCATCAT+TGG | - | chr3.4:1517121-1517140 | MS.gene29958:intron | 45.0% | |
| AGGTTCTGTAAGACACAGAG+AGG | - | chr3.4:1515814-1515833 | MS.gene29958:intron | 45.0% | |
| ATGCCAACAATTCTACGAGC+AGG | - | chr3.4:1517268-1517287 | MS.gene29958:intron | 45.0% | |
| CACCCTTCTCAAGGATGATT+TGG | - | chr3.4:1518129-1518148 | MS.gene29958:intron | 45.0% | |
| CAGGTAGAGGAATGACATTG+TGG | - | chr3.4:1517287-1517306 | MS.gene29958:intron | 45.0% | |
| CCAACATTCACAAATTGGCC+AGG | + | chr3.4:1516189-1516208 | None:intergenic | 45.0% | |
| CCTGGCCAATTTGTGAATGT+TGG | - | chr3.4:1516186-1516205 | MS.gene29958:intron | 45.0% | |
| CTACCTGCTCGTAGAATTGT+TGG | + | chr3.4:1517274-1517293 | None:intergenic | 45.0% | |
| GAAGGGAGAAGTCCATCATT+GGG | - | chr3.4:1517122-1517141 | MS.gene29958:intron | 45.0% | |
| GACATTGTGGGAACGTTCTA+GGG | - | chr3.4:1517300-1517319 | MS.gene29958:intron | 45.0% | |
| GCACCAACACTTCAGATTGA+AGG | + | chr3.4:1515655-1515674 | None:intergenic | 45.0% | |
| TGACATTGTGGGAACGTTCT+AGG | - | chr3.4:1517299-1517318 | MS.gene29958:intron | 45.0% | |
| TGTTCGAGCGATATGGAGAA+GGG | - | chr3.4:1517105-1517124 | MS.gene29958:intron | 45.0% | |
| TTCTGTAAGACACAGAGAGG+TGG | - | chr3.4:1515817-1515836 | MS.gene29958:intron | 45.0% | |
| TTGTTCGAGCGATATGGAGA+AGG | - | chr3.4:1517104-1517123 | MS.gene29958:intron | 45.0% | |
| ! | ACGCCTTCAATCTGAAGTGT+TGG | - | chr3.4:1515649-1515668 | MS.gene29958:intron | 45.0% |
| ! | ATCACTCTATGATGGTGCCA+TGG | - | chr3.4:1516131-1516150 | MS.gene29958:intron | 45.0% |
| ! | TAGTTGATTCTACTCGGGCA+CGG | + | chr3.4:1517800-1517819 | None:intergenic | 45.0% |
| AACAGCTCCAGCTTTCTAGG+AGG | + | chr3.4:1517334-1517353 | None:intergenic | 50.0% | |
| AGAGAGGTGGTCAGAGAAAC+TGG | - | chr3.4:1515830-1515849 | MS.gene29958:intron | 50.0% | |
| CACATGTGTCAGTGTCGTGT+CGG | - | chr3.4:1515611-1515630 | MS.gene29958:intron | 50.0% | |
| GAATGCTCGTATTGTGCGTG+AGG | - | chr3.4:1517892-1517911 | MS.gene29958:intron | 50.0% | |
| GAGAACAGCTCCAGCTTTCT+AGG | + | chr3.4:1517337-1517356 | None:intergenic | 50.0% | |
| GCAGCACTATCTTCACTGGA+TGG | - | chr3.4:1517245-1517264 | MS.gene29958:intron | 50.0% | |
| GCCATGGTAGATTACAGTGG+CGG | - | chr3.4:1516147-1516166 | MS.gene29958:intron | 50.0% | |
| TCCGCCACTGTAATCTACCA+TGG | + | chr3.4:1516151-1516170 | None:intergenic | 50.0% | |
| TGAACCTCCTCCTAGAAAGC+TGG | - | chr3.4:1517324-1517343 | MS.gene29958:intron | 50.0% | |
| TTGCGCAGCACTATCTTCAC+TGG | - | chr3.4:1517241-1517260 | MS.gene29958:intron | 50.0% | |
| ! | AGTTGATTCTACTCGGGCAC+GGG | + | chr3.4:1517799-1517818 | None:intergenic | 50.0% |
| ! | GCGTGAGGCATTATGCGAAT+TGG | - | chr3.4:1517907-1517926 | MS.gene29958:intron | 50.0% |
| ! | GGTGCCATGGTAGATTACAG+TGG | - | chr3.4:1516144-1516163 | MS.gene29958:intron | 50.0% |
| ! | GTGCGTTTGGTTTCACGGTA+GGG | + | chr3.4:1517615-1517634 | None:intergenic | 50.0% |
| ! | TGTGCGTTTGGTTTCACGGT+AGG | + | chr3.4:1517616-1517635 | None:intergenic | 50.0% |
| !! | CTTGAGAAGGGTGCCTAGTA+CGG | + | chr3.4:1518122-1518141 | None:intergenic | 50.0% |
| CGACACGACACTGACACATG+TGG | + | chr3.4:1515613-1515632 | None:intergenic | 55.0% | |
| CGTACTAGGCACCCTTCTCA+AGG | - | chr3.4:1518120-1518139 | MS.gene29958:intron | 55.0% | |
| GAGGTGGTCAGAGAAACTGG+TGG | - | chr3.4:1515833-1515852 | MS.gene29958:intron | 55.0% | |
| ! | AGCTCCAGCTTTCTAGGAGG+AGG | + | chr3.4:1517331-1517350 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 1515355 | 1518525 | 1515355 | ID=MS.gene29958 |
| chr3.4 | mRNA | 1515355 | 1518525 | 1515355 | ID=MS.gene29958.t1;Parent=MS.gene29958 |
| chr3.4 | exon | 1518499 | 1518525 | 1518499 | ID=MS.gene29958.t1.exon1;Parent=MS.gene29958.t1 |
| chr3.4 | CDS | 1518499 | 1518525 | 1518499 | ID=cds.MS.gene29958.t1;Parent=MS.gene29958.t1 |
| chr3.4 | exon | 1518016 | 1518083 | 1518016 | ID=MS.gene29958.t1.exon2;Parent=MS.gene29958.t1 |
| chr3.4 | CDS | 1518016 | 1518083 | 1518016 | ID=cds.MS.gene29958.t1;Parent=MS.gene29958.t1 |
| chr3.4 | exon | 1517330 | 1517379 | 1517330 | ID=MS.gene29958.t1.exon3;Parent=MS.gene29958.t1 |
| chr3.4 | CDS | 1517330 | 1517379 | 1517330 | ID=cds.MS.gene29958.t1;Parent=MS.gene29958.t1 |
| chr3.4 | exon | 1516724 | 1516793 | 1516724 | ID=MS.gene29958.t1.exon4;Parent=MS.gene29958.t1 |
| chr3.4 | CDS | 1516724 | 1516793 | 1516724 | ID=cds.MS.gene29958.t1;Parent=MS.gene29958.t1 |
| chr3.4 | exon | 1516508 | 1516631 | 1516508 | ID=MS.gene29958.t1.exon5;Parent=MS.gene29958.t1 |
| chr3.4 | CDS | 1516508 | 1516631 | 1516508 | ID=cds.MS.gene29958.t1;Parent=MS.gene29958.t1 |
| chr3.4 | exon | 1515871 | 1515987 | 1515871 | ID=MS.gene29958.t1.exon6;Parent=MS.gene29958.t1 |
| chr3.4 | CDS | 1515871 | 1515987 | 1515871 | ID=cds.MS.gene29958.t1;Parent=MS.gene29958.t1 |
| chr3.4 | exon | 1515355 | 1515453 | 1515355 | ID=MS.gene29958.t1.exon7;Parent=MS.gene29958.t1 |
| chr3.4 | CDS | 1515355 | 1515453 | 1515355 | ID=cds.MS.gene29958.t1;Parent=MS.gene29958.t1 |
| Gene Sequence |
| Protein sequence |
