Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30156.t1 | XP_003600057.1 | 94.3 | 435 | 23 | 1 | 1 | 435 | 1 | 433 | 1.10E-252 | 882.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30156.t1 | Q9LJU7 | 72.6 | 430 | 118 | 0 | 6 | 435 | 8 | 437 | 1.1e-202 | 707.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30156.t1 | G7IXK7 | 94.3 | 435 | 23 | 1 | 1 | 435 | 1 | 433 | 7.6e-253 | 882.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene30156 | 0.816802 | 4.58E-52 | -1.69E-46 |
| MS.gene050589 | MS.gene30156 | 0.824002 | 1.02E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene30156 | MS.gene24675 | PPI |
| MS.gene050332 | MS.gene30156 | PPI |
| MS.gene24727 | MS.gene30156 | PPI |
| MS.gene007238 | MS.gene30156 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30156.t1 | MTR_3g051240 | 94.253 | 435 | 23 | 1 | 1 | 435 | 1 | 433 | 0.0 | 853 |
| MS.gene30156.t1 | MTR_5g092360 | 78.910 | 422 | 87 | 1 | 16 | 435 | 18 | 439 | 0.0 | 719 |
| MS.gene30156.t1 | MTR_1g060360 | 59.719 | 427 | 168 | 4 | 6 | 430 | 9 | 433 | 0.0 | 534 |
| MS.gene30156.t1 | MTR_7g104330 | 59.179 | 414 | 166 | 3 | 19 | 430 | 29 | 441 | 0.0 | 533 |
| MS.gene30156.t1 | MTR_7g104360 | 58.753 | 417 | 166 | 5 | 5 | 418 | 9 | 422 | 2.56e-176 | 499 |
| MS.gene30156.t1 | MTR_4g115670 | 42.788 | 416 | 209 | 8 | 45 | 434 | 55 | 467 | 2.64e-102 | 313 |
| MS.gene30156.t1 | MTR_0188s0020 | 42.923 | 431 | 211 | 13 | 15 | 412 | 26 | 454 | 1.69e-101 | 310 |
| MS.gene30156.t1 | MTR_6g013050 | 37.838 | 481 | 205 | 9 | 43 | 432 | 69 | 546 | 1.63e-97 | 304 |
| MS.gene30156.t1 | MTR_4g037105 | 42.410 | 415 | 205 | 11 | 31 | 412 | 35 | 448 | 5.67e-97 | 298 |
| MS.gene30156.t1 | MTR_3g083810 | 39.520 | 458 | 184 | 8 | 45 | 412 | 71 | 525 | 1.90e-96 | 300 |
| MS.gene30156.t1 | MTR_7g056403 | 38.646 | 458 | 188 | 8 | 45 | 412 | 70 | 524 | 2.20e-95 | 297 |
| MS.gene30156.t1 | MTR_3g083820 | 39.387 | 457 | 188 | 9 | 45 | 413 | 71 | 526 | 1.21e-94 | 295 |
| MS.gene30156.t1 | MTR_1g112630 | 41.014 | 434 | 220 | 13 | 13 | 412 | 19 | 450 | 4.92e-93 | 288 |
| MS.gene30156.t1 | MTR_6g013050 | 38.018 | 434 | 177 | 8 | 43 | 387 | 69 | 499 | 4.28e-87 | 275 |
| MS.gene30156.t1 | MTR_1g052505 | 31.045 | 335 | 181 | 12 | 58 | 349 | 209 | 536 | 1.43e-35 | 139 |
| MS.gene30156.t1 | MTR_4g037670 | 28.084 | 381 | 210 | 10 | 58 | 381 | 231 | 604 | 7.61e-35 | 137 |
| MS.gene30156.t1 | MTR_3g074930 | 25.901 | 444 | 257 | 14 | 44 | 421 | 182 | 619 | 4.37e-26 | 111 |
| MS.gene30156.t1 | MTR_3g074930 | 25.761 | 427 | 250 | 13 | 56 | 421 | 192 | 612 | 1.12e-25 | 110 |
| MS.gene30156.t1 | MTR_4g082930 | 26.747 | 415 | 226 | 13 | 45 | 384 | 144 | 555 | 8.03e-25 | 107 |
| MS.gene30156.t1 | MTR_5g092450 | 60.000 | 80 | 12 | 1 | 308 | 387 | 8 | 67 | 3.39e-24 | 96.3 |
| MS.gene30156.t1 | MTR_4g103520 | 25.676 | 370 | 220 | 10 | 101 | 421 | 176 | 539 | 1.05e-23 | 103 |
| MS.gene30156.t1 | MTR_3g074970 | 25.833 | 360 | 187 | 10 | 101 | 421 | 198 | 516 | 1.23e-23 | 103 |
| MS.gene30156.t1 | MTR_4g103520 | 25.613 | 367 | 224 | 9 | 101 | 421 | 253 | 616 | 1.32e-23 | 103 |
| MS.gene30156.t1 | MTR_5g045600 | 25.381 | 394 | 239 | 12 | 76 | 421 | 222 | 608 | 5.10e-23 | 102 |
| MS.gene30156.t1 | MTR_5g092300 | 67.742 | 62 | 20 | 0 | 364 | 425 | 9 | 70 | 1.73e-22 | 91.3 |
| MS.gene30156.t1 | MTR_8g063080 | 26.558 | 369 | 218 | 12 | 101 | 421 | 238 | 601 | 1.84e-22 | 100 |
| MS.gene30156.t1 | MTR_4g082940 | 26.214 | 412 | 230 | 15 | 39 | 384 | 138 | 541 | 1.77e-21 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30156.t1 | AT3G20500 | 72.685 | 432 | 115 | 1 | 7 | 435 | 6 | 437 | 0.0 | 684 |
| MS.gene30156.t1 | AT3G52820 | 61.735 | 392 | 146 | 3 | 26 | 415 | 29 | 418 | 0.0 | 519 |
| MS.gene30156.t1 | AT3G52780 | 58.753 | 417 | 164 | 6 | 6 | 415 | 4 | 419 | 3.72e-175 | 497 |
| MS.gene30156.t1 | AT3G52810 | 55.149 | 437 | 187 | 3 | 1 | 429 | 1 | 436 | 2.75e-174 | 495 |
| MS.gene30156.t1 | AT3G52780 | 57.485 | 334 | 134 | 6 | 6 | 332 | 4 | 336 | 1.26e-132 | 386 |
| MS.gene30156.t1 | AT5G34850 | 40.590 | 441 | 230 | 10 | 3 | 412 | 7 | 446 | 1.86e-99 | 305 |
| MS.gene30156.t1 | AT4G36350 | 40.135 | 446 | 230 | 13 | 2 | 412 | 5 | 448 | 2.03e-98 | 302 |
| MS.gene30156.t1 | AT1G56360 | 40.136 | 441 | 228 | 12 | 7 | 412 | 9 | 448 | 2.33e-96 | 297 |
| MS.gene30156.t1 | AT3G07130 | 41.093 | 421 | 175 | 5 | 65 | 413 | 97 | 516 | 3.88e-96 | 299 |
| MS.gene30156.t1 | AT2G27190 | 38.444 | 450 | 236 | 12 | 1 | 412 | 7 | 453 | 2.60e-89 | 279 |
| MS.gene30156.t1 | AT3G07130 | 38.106 | 454 | 175 | 6 | 65 | 413 | 97 | 549 | 3.01e-89 | 282 |
| MS.gene30156.t1 | AT4G13700 | 41.885 | 382 | 167 | 7 | 42 | 370 | 62 | 441 | 4.10e-87 | 273 |
| MS.gene30156.t1 | AT2G18130 | 38.710 | 434 | 221 | 12 | 7 | 412 | 13 | 429 | 6.30e-87 | 272 |
| MS.gene30156.t1 | AT2G16430 | 38.864 | 440 | 234 | 12 | 6 | 412 | 15 | 452 | 4.39e-86 | 271 |
| MS.gene30156.t1 | AT2G16430 | 41.411 | 326 | 167 | 8 | 111 | 412 | 7 | 332 | 4.20e-73 | 233 |
| MS.gene30156.t1 | AT2G32770 | 34.194 | 465 | 206 | 11 | 45 | 410 | 69 | 532 | 4.71e-70 | 231 |
| MS.gene30156.t1 | AT4G13700 | 39.589 | 341 | 151 | 7 | 42 | 329 | 62 | 400 | 1.23e-67 | 221 |
| MS.gene30156.t1 | AT3G46120 | 34.101 | 434 | 188 | 14 | 7 | 412 | 13 | 376 | 7.03e-63 | 208 |
| MS.gene30156.t1 | AT2G32770 | 35.150 | 367 | 162 | 6 | 95 | 386 | 62 | 427 | 5.13e-61 | 204 |
| MS.gene30156.t1 | AT2G32770 | 30.323 | 465 | 195 | 12 | 45 | 410 | 69 | 503 | 4.08e-53 | 186 |
| MS.gene30156.t1 | AT1G52940 | 37.281 | 228 | 125 | 9 | 45 | 255 | 15 | 241 | 3.78e-34 | 128 |
| MS.gene30156.t1 | AT5G50400 | 26.486 | 370 | 217 | 13 | 101 | 421 | 165 | 528 | 5.30e-23 | 102 |
| MS.gene30156.t1 | AT5G50400 | 26.486 | 370 | 217 | 13 | 101 | 421 | 237 | 600 | 8.93e-23 | 101 |
| MS.gene30156.t1 | AT2G03450 | 25.917 | 436 | 238 | 16 | 45 | 403 | 143 | 570 | 6.06e-22 | 99.0 |
| MS.gene30156.t1 | AT1G13900 | 30.000 | 270 | 147 | 8 | 172 | 403 | 305 | 570 | 6.63e-22 | 99.0 |
| MS.gene30156.t1 | AT4G24890 | 27.485 | 342 | 189 | 12 | 101 | 392 | 241 | 573 | 7.91e-22 | 98.6 |
| MS.gene30156.t1 | AT1G13750 | 26.225 | 347 | 207 | 10 | 101 | 401 | 239 | 582 | 1.58e-21 | 97.8 |
Find 105 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGACCACAGCAAAACTAAT+TGG | 0.216017 | 3.3:+42644835 | None:intergenic |
| AGAGCATATACCTTTGTTAA+AGG | 0.247102 | 3.3:-42644620 | MS.gene30156:CDS |
| AAGATACACCATACGGTAAT+AGG | 0.307628 | 3.3:-42644943 | MS.gene30156:CDS |
| GCACCTTCAGTTGTAGAATA+TGG | 0.309081 | 3.3:-42645042 | MS.gene30156:CDS |
| ACGTGTATATAATGGAAAAT+TGG | 0.322130 | 3.3:-42642528 | MS.gene30156:CDS |
| TGTACTCAGAACAATATAAA+TGG | 0.325340 | 3.3:-42644465 | MS.gene30156:CDS |
| AATCCAGGTACACATTTCTT+TGG | 0.328498 | 3.3:-42645112 | MS.gene30156:intron |
| TAAACTCAACACATGCCTTC+TGG | 0.336522 | 3.3:-42642232 | MS.gene30156:CDS |
| TGACAGAAACGTGTATATAA+TGG | 0.346137 | 3.3:-42642536 | MS.gene30156:intron |
| GAATTCCGTGAAGCAAGTTT+TGG | 0.357920 | 3.3:-42642275 | MS.gene30156:CDS |
| TTTGCTGTGGTCGGAGATCT+TGG | 0.363118 | 3.3:-42644826 | MS.gene30156:CDS |
| CGGTAAAATCTGATGATATC+TGG | 0.374577 | 3.3:-42642181 | MS.gene30156:CDS |
| TACGATGTTAACCTGATTCC+TGG | 0.388167 | 3.3:-42644754 | MS.gene30156:CDS |
| TTGATTTGGTCCAACCAGTT+TGG | 0.390912 | 3.3:+42644803 | None:intergenic |
| CCGGCTCATCATCGTCATTC+CGG | 0.394998 | 3.3:+42642201 | None:intergenic |
| CTTGATCCACTTTCCTCAAA+TGG | 0.396116 | 3.3:+42644562 | None:intergenic |
| CGGTAAAAGTAAACAGAATT+CGG | 0.397092 | 3.3:+42644910 | None:intergenic |
| ACGAAAGGTCGCCAGGAATC+AGG | 0.398861 | 3.3:+42644743 | None:intergenic |
| ACCCTCTTCTTATCCTCAAC+AGG | 0.404020 | 3.3:-42646349 | MS.gene30156:intron |
| CAGGTACACATTTCTTTGGC+TGG | 0.410550 | 3.3:-42645108 | MS.gene30156:CDS |
| CGGAATTCTGACCACTTTGG+CGG | 0.431727 | 3.3:+42642290 | None:intergenic |
| TAAACAGAATTCGGCTCTAA+AGG | 0.439226 | 3.3:+42644919 | None:intergenic |
| TTCCCTTGTGTTACCATCCA+TGG | 0.444697 | 3.3:+42644652 | None:intergenic |
| GTAGAAAATGTAACTGTAAG+AGG | 0.446204 | 3.3:+42644975 | None:intergenic |
| GATGTGATCTAATGTTGATT+TGG | 0.450180 | 3.3:+42644789 | None:intergenic |
| CATATACCTTTGTTAAAGGA+TGG | 0.451005 | 3.3:-42644616 | MS.gene30156:CDS |
| TGTCAAAGGTGGACAGGAAA+AGG | 0.453174 | 3.3:-42642801 | MS.gene30156:CDS |
| CATGACCAAAACTTGCTTCA+CGG | 0.454586 | 3.3:+42642270 | None:intergenic |
| GGTGCTCACATTATCATGCT+TGG | 0.459315 | 3.3:-42644508 | MS.gene30156:CDS |
| CGACCACAGCAAAACTAATT+GGG | 0.462918 | 3.3:+42644836 | None:intergenic |
| AGAATGCCATGGAAGATGTA+AGG | 0.466799 | 3.3:+42646374 | None:intergenic |
| TTGGCATACGAAAGGTCGCC+AGG | 0.466992 | 3.3:+42644736 | None:intergenic |
| CAGCATCGTTGGGACACGTT+TGG | 0.476015 | 3.3:-42644706 | MS.gene30156:CDS |
| GTAGAATATGGAACATTGCC+AGG | 0.476108 | 3.3:-42645030 | MS.gene30156:CDS |
| AATTCTGACCACTTTGGCGG+TGG | 0.489479 | 3.3:+42642293 | None:intergenic |
| AGGTGAAGGTGGTGATATGA+TGG | 0.490466 | 3.3:-42642719 | MS.gene30156:CDS |
| TTAACCTCTTTAGACAGCTC+AGG | 0.493926 | 3.3:-42642158 | MS.gene30156:CDS |
| TTGTCATATTTCATGTCCCA+TGG | 0.496286 | 3.3:-42642765 | MS.gene30156:CDS |
| CCAACGATGCTGTATATAGT+TGG | 0.509419 | 3.3:+42644717 | None:intergenic |
| CAACACATGCCTTCTGGAGT+TGG | 0.510276 | 3.3:-42642226 | MS.gene30156:CDS |
| GTCGGAGATCTTGGCCAAAC+TGG | 0.511189 | 3.3:-42644817 | MS.gene30156:CDS |
| TGGATCTGTCAAAGGTGGAC+AGG | 0.515700 | 3.3:-42642807 | MS.gene30156:CDS |
| CCAACTATATACAGCATCGT+TGG | 0.516402 | 3.3:-42644717 | MS.gene30156:CDS |
| TCACGGAATTCTGACCACTT+TGG | 0.520879 | 3.3:+42642287 | None:intergenic |
| CAACTATATACAGCATCGTT+GGG | 0.523730 | 3.3:-42644716 | MS.gene30156:CDS |
| GGTGATGGAGGGAACAAAGA+AGG | 0.525513 | 3.3:-42642476 | MS.gene30156:CDS |
| GATTTATATCCTATAATTCG+AGG | 0.527909 | 3.3:-42644594 | MS.gene30156:CDS |
| TGGAGGGAACAAAGAAGGAT+TGG | 0.532661 | 3.3:-42642471 | MS.gene30156:CDS |
| AGCATAAAGCAATGGCTCCA+TGG | 0.538411 | 3.3:+42642693 | None:intergenic |
| AAACTAATTGGGAATTGAGC+TGG | 0.540026 | 3.3:+42644847 | None:intergenic |
| ACATCCTGAGCTGTCTAAAG+AGG | 0.540208 | 3.3:+42642154 | None:intergenic |
| GGTGCTGTTCATGTAACAAT+TGG | 0.545245 | 3.3:-42642497 | MS.gene30156:CDS |
| AGAACAATATAAATGGCTAA+AGG | 0.548688 | 3.3:-42644458 | MS.gene30156:intron |
| ATGCCTTCTGGAGTTGGCAC+CGG | 0.559442 | 3.3:-42642220 | MS.gene30156:CDS |
| GGTTAACATCGTATCTGCAT+TGG | 0.564067 | 3.3:+42644764 | None:intergenic |
| ATAAATCCATCCTTTAACAA+AGG | 0.566465 | 3.3:+42644610 | None:intergenic |
| GAGATCTTGGCCAAACTGGT+TGG | 0.574404 | 3.3:-42644813 | MS.gene30156:CDS |
| TGCTAGTTCTAGACCATGGA+TGG | 0.576530 | 3.3:-42644665 | MS.gene30156:CDS |
| CTGTGTTACTATTATACCAT+GGG | 0.577355 | 3.3:+42642749 | None:intergenic |
| CCGGAATGACGATGATGAGC+CGG | 0.578815 | 3.3:-42642201 | MS.gene30156:CDS |
| GAGGTGGAAAATGCCATTTG+AGG | 0.583883 | 3.3:-42644575 | MS.gene30156:CDS |
| AAGTATGACTCGGTAGCTGA+AGG | 0.586262 | 3.3:-42645006 | MS.gene30156:CDS |
| AAAATGCCATTTGAGGAAAG+TGG | 0.586799 | 3.3:-42644568 | MS.gene30156:CDS |
| ACAAGCACGTGAGAATCACC+TGG | 0.588099 | 3.3:-42645083 | MS.gene30156:CDS |
| AATAGTAACACAGCTCATCA+AGG | 0.589055 | 3.3:-42642739 | MS.gene30156:CDS |
| GTTCCATATTCTACAACTGA+AGG | 0.590950 | 3.3:+42645039 | None:intergenic |
| CTAAAGGACCTATTACCGTA+TGG | 0.592310 | 3.3:+42644935 | None:intergenic |
| CAGGACCTTGTCCACCGCAT+CGG | 0.593262 | 3.3:+42644890 | None:intergenic |
| TTGAACTTGAAGTTACTGAC+AGG | 0.597052 | 3.3:+42646433 | None:intergenic |
| ATTCCGGTGCCAACTCCAGA+AGG | 0.606814 | 3.3:+42642217 | None:intergenic |
| GCTACCGAGTCATACTTCCC+TGG | 0.609623 | 3.3:+42645012 | None:intergenic |
| GTTCATGTAACAATTGGTGA+TGG | 0.613051 | 3.3:-42642491 | MS.gene30156:CDS |
| TGTCCACGCATATGAACGCT+CGG | 0.615743 | 3.3:-42642641 | MS.gene30156:intron |
| ATCGTTGGGACACGTTTGGT+AGG | 0.618657 | 3.3:-42644702 | MS.gene30156:CDS |
| AACACAGCTCATCAAGGTGA+AGG | 0.620113 | 3.3:-42642733 | MS.gene30156:CDS |
| ATGTAACAATTGGTGATGGA+GGG | 0.620250 | 3.3:-42642487 | MS.gene30156:CDS |
| TGAAATATGACAAGCAACCA+AGG | 0.623138 | 3.3:+42642775 | None:intergenic |
| GAAGAGGGTTCAGAATGCCA+TGG | 0.623934 | 3.3:+42646363 | None:intergenic |
| ACGCTAGCAGCATAAAGCAA+TGG | 0.624653 | 3.3:+42642685 | None:intergenic |
| CATGTAACAATTGGTGATGG+AGG | 0.625889 | 3.3:-42642488 | MS.gene30156:CDS |
| TGGACAGGAAAAGGACACCT+TGG | 0.626466 | 3.3:-42642792 | MS.gene30156:CDS |
| GCTGTGTTACTATTATACCA+TGG | 0.628930 | 3.3:+42642748 | None:intergenic |
| CTCAGGAAAGATACACCATA+CGG | 0.635954 | 3.3:-42644950 | MS.gene30156:CDS |
| ACAGCTCATCAAGGTGAAGG+TGG | 0.636860 | 3.3:-42642730 | MS.gene30156:CDS |
| TAGAATATGGAACATTGCCA+GGG | 0.638513 | 3.3:-42645029 | MS.gene30156:CDS |
| ATATAGATCCACCGCCAAAG+TGG | 0.638937 | 3.3:-42642301 | MS.gene30156:CDS |
| ACAGATGGATCTGTCAAAGG+TGG | 0.639546 | 3.3:-42642812 | MS.gene30156:intron |
| GTATATAGTTGGCATACGAA+AGG | 0.644029 | 3.3:+42644728 | None:intergenic |
| TTATATCCTATAATTCGAGG+TGG | 0.646759 | 3.3:-42644591 | MS.gene30156:CDS |
| TCTACAGATGGATCTGTCAA+AGG | 0.647219 | 3.3:-42642815 | MS.gene30156:intron |
| ACCTGTTGAGGATAAGAAGA+GGG | 0.651423 | 3.3:+42646348 | None:intergenic |
| AGATTTGTCATCAGTAACCC+AGG | 0.657654 | 3.3:+42645065 | None:intergenic |
| AACCTGTTGAGGATAAGAAG+AGG | 0.662586 | 3.3:+42646347 | None:intergenic |
| TGGTGATATGATGGAAACCA+TGG | 0.664924 | 3.3:-42642710 | MS.gene30156:CDS |
| CACTTGCTAGTTCTAGACCA+TGG | 0.671317 | 3.3:-42644669 | MS.gene30156:CDS |
| CATGGTCTAGAACTAGCAAG+TGG | 0.681335 | 3.3:+42644670 | None:intergenic |
| AGACCATGGATGGTAACACA+AGG | 0.685999 | 3.3:-42644655 | MS.gene30156:CDS |
| CTAATTGGGAATTGAGCTGG+TGG | 0.690740 | 3.3:+42644850 | None:intergenic |
| GTTACATGAACAGCACCACA+AGG | 0.694159 | 3.3:+42642503 | None:intergenic |
| TGTGTGAAGTGAACCTGTTG+AGG | 0.695260 | 3.3:+42646336 | None:intergenic |
| ATACCGAGCGTTCATATGCG+TGG | 0.697158 | 3.3:+42642638 | None:intergenic |
| AATGGAAAATTGGATCCTTG+TGG | 0.706470 | 3.3:-42642518 | MS.gene30156:CDS |
| CAAGCACGTGAGAATCACCT+GGG | 0.708786 | 3.3:-42645082 | MS.gene30156:CDS |
| ATTGCCAGGGAAGTATGACT+CGG | 0.709876 | 3.3:-42645016 | MS.gene30156:CDS |
| GACCATGGATGGTAACACAA+GGG | 0.712669 | 3.3:-42644654 | MS.gene30156:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTGTTCTTTTA+TGG | - | chr3.3:42642527-42642546 | MS.gene30156:CDS | 10.0% |
| !! | ATCTTAATTTACACTTAAAA+AGG | + | chr3.3:42646220-42646239 | None:intergenic | 15.0% |
| !!! | GTTTGTTTTAAATTTAATTC+TGG | - | chr3.3:42645625-42645644 | MS.gene30156:intron | 15.0% |
| !! | AAAAGTTAAAACTTTCAGAA+AGG | + | chr3.3:42645041-42645060 | None:intergenic | 20.0% |
| !! | AAAGCAAAATATTGTTTAGT+AGG | + | chr3.3:42644767-42644786 | None:intergenic | 20.0% |
| !! | AAATATGAGATCATAAATGA+AGG | + | chr3.3:42642269-42642288 | None:intergenic | 20.0% |
| !! | AAATATTATGTGTGAACAAT+TGG | + | chr3.3:42644570-42644589 | None:intergenic | 20.0% |
| !! | AATAATTCTGATTTATTGTG+AGG | - | chr3.3:42642617-42642636 | MS.gene30156:intron | 20.0% |
| !! | AATATGAGATCATAAATGAA+GGG | + | chr3.3:42642268-42642287 | None:intergenic | 20.0% |
| !! | ATCAGTAAAAATGTTAGAAT+CGG | + | chr3.3:42642121-42642140 | None:intergenic | 20.0% |
| !! | CTCTCAATAAATATGTATAA+GGG | + | chr3.3:42645414-42645433 | None:intergenic | 20.0% |
| !! | GATCAATGTTACTATATTTA+AGG | - | chr3.3:42642334-42642353 | MS.gene30156:intron | 20.0% |
| !! | GGGATGATAATTATTATAAA+CGG | + | chr3.3:42645721-42645740 | None:intergenic | 20.0% |
| !! | TACTTTGTAAATTTACTTAC+TGG | - | chr3.3:42645982-42646001 | MS.gene30156:intron | 20.0% |
| !! | TCTCTCAATAAATATGTATA+AGG | + | chr3.3:42645415-42645434 | None:intergenic | 20.0% |
| !!! | ATATATCCCATCTTTTAAAA+AGG | + | chr3.3:42642905-42642924 | None:intergenic | 20.0% |
| !!! | TATATCCCATCTTTTAAAAA+GGG | + | chr3.3:42642904-42642923 | None:intergenic | 20.0% |
| !!! | TATTTGAAAACAGTTTTACT+TGG | - | chr3.3:42643372-42643391 | MS.gene30156:intron | 20.0% |
| !!! | TGCTTTTAAAATCGAATTTA+CGG | - | chr3.3:42642751-42642770 | MS.gene30156:CDS | 20.0% |
| ! | AAAAAAAAGACTGTGTTGTA+AGG | - | chr3.3:42645648-42645667 | MS.gene30156:intron | 25.0% |
| ! | AAAAAAAGACTGTGTTGTAA+GGG | - | chr3.3:42645649-42645668 | MS.gene30156:intron | 25.0% |
| ! | ACCAAATACTAAAACATCAA+TGG | + | chr3.3:42642863-42642882 | None:intergenic | 25.0% |
| ! | AGAACAATATAAATGGCTAA+AGG | - | chr3.3:42644116-42644135 | MS.gene30156:intron | 25.0% |
| ! | ATAAATCCATCCTTTAACAA+AGG | + | chr3.3:42643967-42643986 | None:intergenic | 25.0% |
| ! | ATACATATTTATTGAGAGAG+AGG | - | chr3.3:42645416-42645435 | MS.gene30156:intron | 25.0% |
| ! | ATACATTCATATGAAAACCT+AGG | - | chr3.3:42645124-42645143 | MS.gene30156:intron | 25.0% |
| ! | CAAAATATTGTTTAGTAGGA+TGG | + | chr3.3:42644763-42644782 | None:intergenic | 25.0% |
| ! | GATCAAGTAATAAAGCAAAA+GGG | + | chr3.3:42642318-42642337 | None:intergenic | 25.0% |
| ! | GATTTATATCCTATAATTCG+AGG | - | chr3.3:42643980-42643999 | MS.gene30156:intron | 25.0% |
| ! | GTTATAAATAACTGTGAATG+TGG | - | chr3.3:42644475-42644494 | MS.gene30156:CDS | 25.0% |
| ! | TATACTATTCTTACCATGTT+TGG | - | chr3.3:42646245-42646264 | MS.gene30156:intron | 25.0% |
| ! | TATTTATAACCTATGAAGCA+CGG | + | chr3.3:42644465-42644484 | None:intergenic | 25.0% |
| ! | TCAATAAATATGTATAAGGG+AGG | + | chr3.3:42645411-42645430 | None:intergenic | 25.0% |
| ! | TCAGATTCTTATATGAAAAG+TGG | - | chr3.3:42643439-42643458 | MS.gene30156:intron | 25.0% |
| ! | TCAGATTGTATATAAGTGAA+AGG | - | chr3.3:42644946-42644965 | MS.gene30156:CDS | 25.0% |
| ! | TCTAAATGTTTGTCATTCAT+TGG | + | chr3.3:42645175-42645194 | None:intergenic | 25.0% |
| ! | TCTCAAATTATTATCAGTGT+CGG | + | chr3.3:42644345-42644364 | None:intergenic | 25.0% |
| ! | TGATCAAGTAATAAAGCAAA+AGG | + | chr3.3:42642319-42642338 | None:intergenic | 25.0% |
| ! | TGTACTCAGAACAATATAAA+TGG | - | chr3.3:42644109-42644128 | MS.gene30156:intron | 25.0% |
| ! | TTACACTTAAAAAGGAATAG+AGG | + | chr3.3:42646212-42646231 | None:intergenic | 25.0% |
| !! | ACGTGTATATAATGGAAAAT+TGG | - | chr3.3:42646046-42646065 | MS.gene30156:intron | 25.0% |
| !! | ATATTTTGCTTTAGCAGTTT+TGG | - | chr3.3:42644775-42644794 | MS.gene30156:CDS | 25.0% |
| !! | TATTTTGCTTTAGCAGTTTT+GGG | - | chr3.3:42644776-42644795 | MS.gene30156:CDS | 25.0% |
| !! | TGACATCTATTTGAAATGAT+TGG | - | chr3.3:42643038-42643057 | MS.gene30156:intron | 25.0% |
| !! | TGATTTTCTTAAATCCATGA+TGG | - | chr3.3:42642582-42642601 | MS.gene30156:intron | 25.0% |
| !! | TTTTCCGATTCTCATATTTA+GGG | - | chr3.3:42642976-42642995 | MS.gene30156:intron | 25.0% |
| !! | TTTTGTTCTTTTATGGTTTC+TGG | - | chr3.3:42642534-42642553 | MS.gene30156:intron | 25.0% |
| !! | TTTTTCCGATTCTCATATTT+AGG | - | chr3.3:42642975-42642994 | MS.gene30156:intron | 25.0% |
| !!! | AACTCTGAAGTTATTATAGT+AGG | - | chr3.3:42645449-42645468 | MS.gene30156:intron | 25.0% |
| !!! | AACTTTTCTGTTTCTCATTA+GGG | - | chr3.3:42645054-42645073 | MS.gene30156:CDS | 25.0% |
| !!! | ATATCCCATCTTTTAAAAAG+GGG | + | chr3.3:42642903-42642922 | None:intergenic | 25.0% |
| !!! | TAACTTTTCTGTTTCTCATT+AGG | - | chr3.3:42645053-42645072 | MS.gene30156:CDS | 25.0% |
| !!! | TATTATTCTTTTGAAGTTGC+TGG | - | chr3.3:42644045-42644064 | MS.gene30156:intron | 25.0% |
| !!! | TCCATTGATGTTTTAGTATT+TGG | - | chr3.3:42642859-42642878 | MS.gene30156:intron | 25.0% |
| !!! | TTGTTTTTGTCATGTGTTTT+TGG | - | chr3.3:42642382-42642401 | MS.gene30156:intron | 25.0% |
| !!! | TTTTTTCACTTCTTGTTGTA+AGG | + | chr3.3:42644512-42644531 | None:intergenic | 25.0% |
| AAGTATTATAGACTTGTGTC+TGG | - | chr3.3:42642925-42642944 | MS.gene30156:intron | 30.0% | |
| ACTAGAAACAGTTGCATTTA+TGG | + | chr3.3:42644604-42644623 | None:intergenic | 30.0% | |
| AGAGCATATACCTTTGTTAA+AGG | - | chr3.3:42643954-42643973 | MS.gene30156:intron | 30.0% | |
| AGATCACAACGAAGATATAA+AGG | + | chr3.3:42645742-42645761 | None:intergenic | 30.0% | |
| AGATCAGACGACTTATATTT+AGG | - | chr3.3:42642726-42642745 | MS.gene30156:CDS | 30.0% | |
| ATAAATGGCTAAAGGTTAGT+TGG | - | chr3.3:42644124-42644143 | MS.gene30156:intron | 30.0% | |
| ATCTATATACCTACCAAACA+TGG | + | chr3.3:42646261-42646280 | None:intergenic | 30.0% | |
| ATGAGAATCGGAAAAATTAG+AGG | + | chr3.3:42642971-42642990 | None:intergenic | 30.0% | |
| ATGCATGCATATCTTTATGA+AGG | + | chr3.3:42645328-42645347 | None:intergenic | 30.0% | |
| ATTGCACTAAATGATCTATG+AGG | + | chr3.3:42642509-42642528 | None:intergenic | 30.0% | |
| ATTGGTTACAATGCAAGTAA+TGG | + | chr3.3:42645157-42645176 | None:intergenic | 30.0% | |
| CAAAAGAAAAATGAACAGAC+GGG | + | chr3.3:42645504-42645523 | None:intergenic | 30.0% | |
| CATATACCTTTGTTAAAGGA+TGG | - | chr3.3:42643958-42643977 | MS.gene30156:intron | 30.0% | |
| CGGTAAAAGTAAACAGAATT+CGG | + | chr3.3:42643667-42643686 | None:intergenic | 30.0% | |
| CTATAACATGAAACATCACA+AGG | + | chr3.3:42644664-42644683 | None:intergenic | 30.0% | |
| CTTATGAAGTTATGAATGTG+TGG | - | chr3.3:42642817-42642836 | MS.gene30156:intron | 30.0% | |
| CTTGTGATGTTTCATGTTAT+AGG | - | chr3.3:42644662-42644681 | MS.gene30156:CDS | 30.0% | |
| GATCACAACGAAGATATAAA+GGG | + | chr3.3:42645741-42645760 | None:intergenic | 30.0% | |
| GCAAAAGAAAAATGAACAGA+CGG | + | chr3.3:42645505-42645524 | None:intergenic | 30.0% | |
| GTAGAAAATGTAACTGTAAG+AGG | + | chr3.3:42643602-42643621 | None:intergenic | 30.0% | |
| GTAGATAAACTCAAAGAAGT+CGG | + | chr3.3:42643228-42643247 | None:intergenic | 30.0% | |
| GTCTGTTTGTACTAAACTTT+AGG | - | chr3.3:42644692-42644711 | MS.gene30156:CDS | 30.0% | |
| TATTATGTGTGAACAATTGG+AGG | + | chr3.3:42644567-42644586 | None:intergenic | 30.0% | |
| TCATCCCTAAATATGAGAAT+CGG | + | chr3.3:42642983-42643002 | None:intergenic | 30.0% | |
| TGACAGAAACGTGTATATAA+TGG | - | chr3.3:42646038-42646057 | MS.gene30156:intron | 30.0% | |
| TTACATGATATTCACCAAAC+TGG | - | chr3.3:42644267-42644286 | MS.gene30156:intron | 30.0% | |
| TTATATCCTATAATTCGAGG+TGG | - | chr3.3:42643983-42644002 | MS.gene30156:intron | 30.0% | |
| TTATATGAAAAGTGGAATCC+AGG | - | chr3.3:42643447-42643466 | MS.gene30156:intron | 30.0% | |
| TTCATAGTTTATAGCCAGTT+TGG | + | chr3.3:42644284-42644303 | None:intergenic | 30.0% | |
| TTGCACTTCATCATTATCAA+GGG | + | chr3.3:42645234-42645253 | None:intergenic | 30.0% | |
| TTGGTTACAATGCAAGTAAT+GGG | + | chr3.3:42645156-42645175 | None:intergenic | 30.0% | |
| TTGTTCTATGCTAACTACTA+TGG | + | chr3.3:42644922-42644941 | None:intergenic | 30.0% | |
| TTTCCAATTAAAGTATGTCG+TGG | - | chr3.3:42644218-42644237 | MS.gene30156:intron | 30.0% | |
| TTTGCACTTCATCATTATCA+AGG | + | chr3.3:42645235-42645254 | None:intergenic | 30.0% | |
| ! | ATTCAACCTTTCTGTTTTCT+CGG | - | chr3.3:42646180-42646199 | MS.gene30156:intron | 30.0% |
| ! | CAGATATCATCAGATTTTAC+CGG | + | chr3.3:42646395-42646414 | None:intergenic | 30.0% |
| ! | CTGTGTTACTATTATACCAT+GGG | + | chr3.3:42645828-42645847 | None:intergenic | 30.0% |
| ! | GAATTAGTTGGAGATTAGTT+TGG | - | chr3.3:42644848-42644867 | MS.gene30156:CDS | 30.0% |
| ! | GATGTGATCTAATGTTGATT+TGG | + | chr3.3:42643788-42643807 | None:intergenic | 30.0% |
| ! | TCAACAAGAACTACTAGTTT+CGG | + | chr3.3:42645687-42645706 | None:intergenic | 30.0% |
| !! | ATTGTCCCCTTTTTAAAAGA+TGG | - | chr3.3:42642895-42642914 | MS.gene30156:intron | 30.0% |
| !! | TTGTCCCCTTTTTAAAAGAT+GGG | - | chr3.3:42642896-42642915 | MS.gene30156:intron | 30.0% |
| !!! | GCTGTTTTTATAAACTATCG+TGG | + | chr3.3:42643344-42643363 | None:intergenic | 30.0% |
| !!! | GGCTTCTATTTTTATGTATG+TGG | + | chr3.3:42645307-42645326 | None:intergenic | 30.0% |
| !!! | TAGTACTAGTTAGTTTTCTG+AGG | + | chr3.3:42643118-42643137 | None:intergenic | 30.0% |
| !!! | TTTAGCAGTTTTGGGATTAT+TGG | - | chr3.3:42644784-42644803 | MS.gene30156:CDS | 30.0% |
| !!! | TTTGTCATGTGTTTTTGGTT+TGG | - | chr3.3:42642387-42642406 | MS.gene30156:intron | 30.0% |
| AAACTAATTGGGAATTGAGC+TGG | + | chr3.3:42643730-42643749 | None:intergenic | 35.0% | |
| AAATGCCAGAAACATAAACG+TGG | + | chr3.3:42642426-42642445 | None:intergenic | 35.0% | |
| AAGATACACCATACGGTAAT+AGG | - | chr3.3:42643631-42643650 | MS.gene30156:intron | 35.0% | |
| AAGCAGCTTCACTGAAAAAT+TGG | + | chr3.3:42642645-42642664 | None:intergenic | 35.0% | |
| AAGTACCACGTTTATGTTTC+TGG | - | chr3.3:42642418-42642437 | MS.gene30156:intron | 35.0% | |
| AATAGTAACACAGCTCATCA+AGG | - | chr3.3:42645835-42645854 | MS.gene30156:intron | 35.0% | |
| AATCCAGGTACACATTTCTT+TGG | - | chr3.3:42643462-42643481 | MS.gene30156:intron | 35.0% | |
| AATGGAAAATTGGATCCTTG+TGG | - | chr3.3:42646056-42646075 | MS.gene30156:intron | 35.0% | |
| ACATTCCAGACAAATCGAAT+GGG | - | chr3.3:42644171-42644190 | MS.gene30156:intron | 35.0% | |
| AGACTCTTCAGTCTTTATGT+AGG | - | chr3.3:42643182-42643201 | MS.gene30156:intron | 35.0% | |
| AGACTGTTTGAGAGAACATA+TGG | - | chr3.3:42643265-42643284 | MS.gene30156:intron | 35.0% | |
| AGTCTAAAGACGAAAAGTGA+AGG | + | chr3.3:42643167-42643186 | None:intergenic | 35.0% | |
| ATGAAACATCACAAGGTTCA+TGG | + | chr3.3:42644657-42644676 | None:intergenic | 35.0% | |
| ATGATGAAGTGCAAAATCCT+TGG | - | chr3.3:42645240-42645259 | MS.gene30156:intron | 35.0% | |
| CAACTATATACAGCATCGTT+GGG | - | chr3.3:42643858-42643877 | MS.gene30156:intron | 35.0% | |
| CACACAACAACTGAATTAGT+TGG | - | chr3.3:42644836-42644855 | MS.gene30156:CDS | 35.0% | |
| CATTGCATTTACATATGGCT+AGG | - | chr3.3:42645276-42645295 | MS.gene30156:intron | 35.0% | |
| CGGTAAAATCTGATGATATC+TGG | - | chr3.3:42646393-42646412 | MS.gene30156:CDS | 35.0% | |
| CTATTCTTACCATGTTTGGT+AGG | - | chr3.3:42646249-42646268 | MS.gene30156:intron | 35.0% | |
| GAAAAACCTTACATCTTCCA+TGG | - | chr3.3:42642194-42642213 | MS.gene30156:CDS | 35.0% | |
| GAGAGATTATTACTGTAGCA+AGG | + | chr3.3:42642562-42642581 | None:intergenic | 35.0% | |
| GCATGCATTGCATTTACATA+TGG | - | chr3.3:42645271-42645290 | MS.gene30156:intron | 35.0% | |
| GTATATAGTTGGCATACGAA+AGG | + | chr3.3:42643849-42643868 | None:intergenic | 35.0% | |
| GTTCCATATTCTACAACTGA+AGG | + | chr3.3:42643538-42643557 | None:intergenic | 35.0% | |
| TACATTCCAGACAAATCGAA+TGG | - | chr3.3:42644170-42644189 | MS.gene30156:intron | 35.0% | |
| TAGAATATGGAACATTGCCA+GGG | - | chr3.3:42643545-42643564 | MS.gene30156:intron | 35.0% | |
| TAGCCACGACATACTTTAAT+TGG | + | chr3.3:42644224-42644243 | None:intergenic | 35.0% | |
| TAGTATCCGAGAAAACAGAA+AGG | + | chr3.3:42646189-42646208 | None:intergenic | 35.0% | |
| TCGGAAAAATTAGAGGTTGA+AGG | + | chr3.3:42642964-42642983 | None:intergenic | 35.0% | |
| TGAAATATGACAAGCAACCA+AGG | + | chr3.3:42645802-42645821 | None:intergenic | 35.0% | |
| TGGTTACAATGCAAGTAATG+GGG | + | chr3.3:42645155-42645174 | None:intergenic | 35.0% | |
| TTAGTATTTGGTTGAGTGTG+TGG | - | chr3.3:42642871-42642890 | MS.gene30156:intron | 35.0% | |
| TTGAACTTGAAGTTACTGAC+AGG | + | chr3.3:42642144-42642163 | None:intergenic | 35.0% | |
| TTGTCATATTTCATGTCCCA+TGG | - | chr3.3:42645809-42645828 | MS.gene30156:intron | 35.0% | |
| ! | AAAATGCCATTTGAGGAAAG+TGG | - | chr3.3:42644006-42644025 | MS.gene30156:intron | 35.0% |
| ! | AGATGTAAGGTTTTTCTAGG+AGG | + | chr3.3:42642190-42642209 | None:intergenic | 35.0% |
| ! | AGTTACATTTTCTACAGCTC+AGG | - | chr3.3:42643607-42643626 | MS.gene30156:intron | 35.0% |
| ! | CATTTTCCACCTCGAATTAT+AGG | + | chr3.3:42643992-42644011 | None:intergenic | 35.0% |
| ! | GCTGTGTTACTATTATACCA+TGG | + | chr3.3:42645829-42645848 | None:intergenic | 35.0% |
| ! | GGAAGATGTAAGGTTTTTCT+AGG | + | chr3.3:42642193-42642212 | None:intergenic | 35.0% |
| ! | TAAACAGAATTCGGCTCTAA+AGG | + | chr3.3:42643658-42643677 | None:intergenic | 35.0% |
| !! | AACATCAATGGACTAGACTA+CGG | + | chr3.3:42642851-42642870 | None:intergenic | 35.0% |
| !! | AATTTTTCAGTGAAGCTGCT+TGG | - | chr3.3:42642644-42642663 | MS.gene30156:CDS | 35.0% |
| !! | CTTAAATCCATGATGGATTG+TGG | - | chr3.3:42642589-42642608 | MS.gene30156:intron | 35.0% |
| !! | TCTGTTTACTTTTACCGATG+CGG | - | chr3.3:42643670-42643689 | MS.gene30156:intron | 35.0% |
| !!! | ATTCCCAATTAGTTTTGCTG+TGG | - | chr3.3:42643735-42643754 | MS.gene30156:intron | 35.0% |
| AAACTATCGTGGAGAGCTTA+TGG | + | chr3.3:42643333-42643352 | None:intergenic | 40.0% | |
| AACAGTTGCATTTATGGCAG+TGG | + | chr3.3:42644598-42644617 | None:intergenic | 40.0% | |
| AACCTGTTGAGGATAAGAAG+AGG | + | chr3.3:42642230-42642249 | None:intergenic | 40.0% | |
| ACCTGTTGAGGATAAGAAGA+GGG | + | chr3.3:42642229-42642248 | None:intergenic | 40.0% | |
| AGAATGCCATGGAAGATGTA+AGG | + | chr3.3:42642203-42642222 | None:intergenic | 40.0% | |
| AGATTTGTCATCAGTAACCC+AGG | + | chr3.3:42643512-42643531 | None:intergenic | 40.0% | |
| ATGCACTTATGACACCCTAA+AGG | - | chr3.3:42646471-42646490 | MS.gene30156:CDS | 40.0% | |
| CCAACGATGCTGTATATAGT+TGG | + | chr3.3:42643860-42643879 | None:intergenic | 40.0% | |
| CCAACTATATACAGCATCGT+TGG | - | chr3.3:42643857-42643876 | MS.gene30156:intron | 40.0% | |
| CGACCACAGCAAAACTAATT+GGG | + | chr3.3:42643741-42643760 | None:intergenic | 40.0% | |
| CTAAAGGACCTATTACCGTA+TGG | + | chr3.3:42643642-42643661 | None:intergenic | 40.0% | |
| CTCAGGAAAGATACACCATA+CGG | - | chr3.3:42643624-42643643 | MS.gene30156:intron | 40.0% | |
| CTTGATCCACTTTCCTCAAA+TGG | + | chr3.3:42644015-42644034 | None:intergenic | 40.0% | |
| GAGCTTATGGAAATAAGCTG+AGG | + | chr3.3:42643320-42643339 | None:intergenic | 40.0% | |
| GCACCTTCAGTTGTAGAATA+TGG | - | chr3.3:42643532-42643551 | MS.gene30156:intron | 40.0% | |
| GGTTAACATCGTATCTGCAT+TGG | + | chr3.3:42643813-42643832 | None:intergenic | 40.0% | |
| GGTTACAATGCAAGTAATGG+GGG | + | chr3.3:42645154-42645173 | None:intergenic | 40.0% | |
| GTAGAATATGGAACATTGCC+AGG | - | chr3.3:42643544-42643563 | MS.gene30156:intron | 40.0% | |
| GTTCTCTCAAACAGTCTCAT+AGG | + | chr3.3:42643262-42643281 | None:intergenic | 40.0% | |
| TAAACTCAACACATGCCTTC+TGG | - | chr3.3:42646342-42646361 | MS.gene30156:intron | 40.0% | |
| TACGATGTTAACCTGATTCC+TGG | - | chr3.3:42643820-42643839 | MS.gene30156:intron | 40.0% | |
| TCAAGGGAAGAAAGAAGCAA+CGG | + | chr3.3:42645218-42645237 | None:intergenic | 40.0% | |
| TCTACAGATGGATCTGTCAA+AGG | - | chr3.3:42645759-42645778 | MS.gene30156:intron | 40.0% | |
| TCTTCGTTGTGATCTACAGA+TGG | - | chr3.3:42645747-42645766 | MS.gene30156:intron | 40.0% | |
| TTAACCTCTTTAGACAGCTC+AGG | - | chr3.3:42646416-42646435 | MS.gene30156:CDS | 40.0% | |
| ! | CATGACCAAAACTTGCTTCA+CGG | + | chr3.3:42646307-42646326 | None:intergenic | 40.0% |
| ! | GAATTCCGTGAAGCAAGTTT+TGG | - | chr3.3:42646299-42646318 | MS.gene30156:intron | 40.0% |
| ! | TAGATCCCATTCGATTTGTC+TGG | + | chr3.3:42644179-42644198 | None:intergenic | 40.0% |
| ! | TGGTGATATGATGGAAACCA+TGG | - | chr3.3:42645864-42645883 | MS.gene30156:intron | 40.0% |
| !! | ATTGGAGGCATCAAGAAAAC+AGG | + | chr3.3:42644552-42644571 | None:intergenic | 40.0% |
| !! | GGTGCTGTTCATGTAACAAT+TGG | - | chr3.3:42646077-42646096 | MS.gene30156:intron | 40.0% |
| !! | TGTAAGGTTTTTCTAGGAGG+AGG | + | chr3.3:42642187-42642206 | None:intergenic | 40.0% |
| !! | TTGATTTGGTCCAACCAGTT+TGG | + | chr3.3:42643774-42643793 | None:intergenic | 40.0% |
| !!! | AGCGTCGATTTAGTTTTTGC+TGG | - | chr3.3:42645907-42645926 | MS.gene30156:intron | 40.0% |
| !!! | CCAATTAGTTTTGCTGTGGT+CGG | - | chr3.3:42643739-42643758 | MS.gene30156:intron | 40.0% |
| AACACAGCTCATCAAGGTGA+AGG | - | chr3.3:42645841-42645860 | MS.gene30156:intron | 45.0% | |
| AATGCATGCATCTCTCACCA+AGG | + | chr3.3:42645260-42645279 | None:intergenic | 45.0% | |
| ACAGATGGATCTGTCAAAGG+TGG | - | chr3.3:42645762-42645781 | MS.gene30156:intron | 45.0% | |
| ACATCCTGAGCTGTCTAAAG+AGG | + | chr3.3:42646423-42646442 | None:intergenic | 45.0% | |
| ACCCTCTTCTTATCCTCAAC+AGG | - | chr3.3:42642225-42642244 | MS.gene30156:CDS | 45.0% | |
| ACGCTAGCAGCATAAAGCAA+TGG | + | chr3.3:42645892-42645911 | None:intergenic | 45.0% | |
| AGACCATGGATGGTAACACA+AGG | - | chr3.3:42643919-42643938 | MS.gene30156:intron | 45.0% | |
| AGCATAAAGCAATGGCTCCA+TGG | + | chr3.3:42645884-42645903 | None:intergenic | 45.0% | |
| AGGTGAAGGTGGTGATATGA+TGG | - | chr3.3:42645855-42645874 | MS.gene30156:intron | 45.0% | |
| ATAAGCTGAGGACAGCTTCT+AGG | + | chr3.3:42643308-42643327 | None:intergenic | 45.0% | |
| ATATAGATCCACCGCCAAAG+TGG | - | chr3.3:42646273-42646292 | MS.gene30156:intron | 45.0% | |
| CAGCCAAAGAAATGTGTACC+TGG | + | chr3.3:42643468-42643487 | None:intergenic | 45.0% | |
| CAGGTACACATTTCTTTGGC+TGG | - | chr3.3:42643466-42643485 | MS.gene30156:intron | 45.0% | |
| CCGACCACAGCAAAACTAAT+TGG | + | chr3.3:42643742-42643761 | None:intergenic | 45.0% | |
| CTAATTGGGAATTGAGCTGG+TGG | + | chr3.3:42643727-42643746 | None:intergenic | 45.0% | |
| CTGCAGTCAATCACAATTGC+TGG | - | chr3.3:42642699-42642718 | MS.gene30156:CDS | 45.0% | |
| GACCATGGATGGTAACACAA+GGG | - | chr3.3:42643920-42643939 | MS.gene30156:intron | 45.0% | |
| GATAATTCCGTAAAGCAGCG+CGG | + | chr3.3:42645090-42645109 | None:intergenic | 45.0% | |
| GGTGCTCACATTATCATGCT+TGG | - | chr3.3:42644066-42644085 | MS.gene30156:intron | 45.0% | |
| GTGAAGCTGCTTGGTTGATT+CGG | - | chr3.3:42642653-42642672 | MS.gene30156:CDS | 45.0% | |
| GTTACATGAACAGCACCACA+AGG | + | chr3.3:42646074-42646093 | None:intergenic | 45.0% | |
| TATGAACACCGACAGAGACA+TGG | - | chr3.3:42644298-42644317 | MS.gene30156:intron | 45.0% | |
| TCAAAGAAGTCGGTCCAAAC+AGG | + | chr3.3:42643218-42643237 | None:intergenic | 45.0% | |
| TCACGGAATTCTGACCACTT+TGG | + | chr3.3:42646290-42646309 | None:intergenic | 45.0% | |
| TGTCAAAGGTGGACAGGAAA+AGG | - | chr3.3:42645773-42645792 | MS.gene30156:intron | 45.0% | |
| TGTGTGAAGTGAACCTGTTG+AGG | + | chr3.3:42642241-42642260 | None:intergenic | 45.0% | |
| TTAGCGACCACAATCCATCA+TGG | + | chr3.3:42642599-42642618 | None:intergenic | 45.0% | |
| TTCCCTTGTGTTACCATCCA+TGG | + | chr3.3:42643925-42643944 | None:intergenic | 45.0% | |
| TTCCTCGATTAGGTGTATCC+CGG | + | chr3.3:42644439-42644458 | None:intergenic | 45.0% | |
| ! | ATTGCCAGGGAAGTATGACT+CGG | - | chr3.3:42643558-42643577 | MS.gene30156:intron | 45.0% |
| ! | CATGGTCTAGAACTAGCAAG+TGG | + | chr3.3:42643907-42643926 | None:intergenic | 45.0% |
| ! | GAGGTGGAAAATGCCATTTG+AGG | - | chr3.3:42643999-42644018 | MS.gene30156:intron | 45.0% |
| ! | TGAAGCTGCTTGGTTGATTC+GGG | - | chr3.3:42642654-42642673 | MS.gene30156:CDS | 45.0% |
| !! | AAGTATGACTCGGTAGCTGA+AGG | - | chr3.3:42643568-42643587 | MS.gene30156:intron | 45.0% |
| !! | CACTTGCTAGTTCTAGACCA+TGG | - | chr3.3:42643905-42643924 | MS.gene30156:intron | 45.0% |
| !! | CGTGAAGCAAGTTTTGGTCA+TGG | - | chr3.3:42646305-42646324 | MS.gene30156:intron | 45.0% |
| !! | GTTTACTTTTACCGATGCGG+TGG | - | chr3.3:42643673-42643692 | MS.gene30156:intron | 45.0% |
| !! | TGCTAGTTCTAGACCATGGA+TGG | - | chr3.3:42643909-42643928 | MS.gene30156:intron | 45.0% |
| !! | TGCTTGGTTGATTCGGGAAA+TGG | - | chr3.3:42642660-42642679 | MS.gene30156:CDS | 45.0% |
| AATTCTGACCACTTTGGCGG+TGG | + | chr3.3:42646284-42646303 | None:intergenic | 50.0% | |
| ACAAGCACGTGAGAATCACC+TGG | - | chr3.3:42643491-42643510 | MS.gene30156:intron | 50.0% | |
| ACAGCTCATCAAGGTGAAGG+TGG | - | chr3.3:42645844-42645863 | MS.gene30156:intron | 50.0% | |
| ACCGACAGAGACATGGACAT+CGG | - | chr3.3:42644305-42644324 | MS.gene30156:intron | 50.0% | |
| AGCACGGACATTCCTCGATT+AGG | + | chr3.3:42644449-42644468 | None:intergenic | 50.0% | |
| ATACCGAGCGTTCATATGCG+TGG | + | chr3.3:42645939-42645958 | None:intergenic | 50.0% | |
| ATCGTTGGGACACGTTTGGT+AGG | - | chr3.3:42643872-42643891 | MS.gene30156:intron | 50.0% | |
| ATTGACTGCAGTGACTCTGC+AGG | + | chr3.3:42642690-42642709 | None:intergenic | 50.0% | |
| CAAGCACGTGAGAATCACCT+GGG | - | chr3.3:42643492-42643511 | MS.gene30156:intron | 50.0% | |
| CGGAATTCTGACCACTTTGG+CGG | + | chr3.3:42646287-42646306 | None:intergenic | 50.0% | |
| GAACGCTCGGTATGCTAATG+TGG | - | chr3.3:42645946-42645965 | MS.gene30156:intron | 50.0% | |
| GAAGAGGGTTCAGAATGCCA+TGG | + | chr3.3:42642214-42642233 | None:intergenic | 50.0% | |
| GAGATCTTGGCCAAACTGGT+TGG | - | chr3.3:42643761-42643780 | MS.gene30156:intron | 50.0% | |
| GAGGAATGTCCGTGCTTCAT+AGG | - | chr3.3:42644453-42644472 | MS.gene30156:intron | 50.0% | |
| GATTAGGTGTATCCCGGTGT+CGG | + | chr3.3:42644433-42644452 | None:intergenic | 50.0% | |
| TAGGCGATCATGAGCCTGTT+TGG | - | chr3.3:42643201-42643220 | MS.gene30156:intron | 50.0% | |
| TGGACAGGAAAAGGACACCT+TGG | - | chr3.3:42645782-42645801 | MS.gene30156:intron | 50.0% | |
| TGGATCTGTCAAAGGTGGAC+AGG | - | chr3.3:42645767-42645786 | MS.gene30156:intron | 50.0% | |
| TGTCCACGCATATGAACGCT+CGG | - | chr3.3:42645933-42645952 | MS.gene30156:intron | 50.0% | |
| TTGACTGCAGTGACTCTGCA+GGG | + | chr3.3:42642689-42642708 | None:intergenic | 50.0% | |
| ! | CAAGTAATGGGGGTAGTCCT+AGG | + | chr3.3:42645144-42645163 | None:intergenic | 50.0% |
| ! | TTTGCTGTGGTCGGAGATCT+TGG | - | chr3.3:42643748-42643767 | MS.gene30156:intron | 50.0% |
| ! | TTTTACCGATGCGGTGGACA+AGG | - | chr3.3:42643679-42643698 | MS.gene30156:intron | 50.0% |
| !! | CAACACATGCCTTCTGGAGT+TGG | - | chr3.3:42646348-42646367 | MS.gene30156:intron | 50.0% |
| ACGAAAGGTCGCCAGGAATC+AGG | + | chr3.3:42643834-42643853 | None:intergenic | 55.0% | |
| CACCGGGATACACCTAATCG+AGG | - | chr3.3:42644434-42644453 | MS.gene30156:intron | 55.0% | |
| CAGCATCGTTGGGACACGTT+TGG | - | chr3.3:42643868-42643887 | MS.gene30156:intron | 55.0% | |
| CCCGATGTCCATGTCTCTGT+CGG | + | chr3.3:42644309-42644328 | None:intergenic | 55.0% | |
| CCGACAGAGACATGGACATC+GGG | - | chr3.3:42644306-42644325 | MS.gene30156:intron | 55.0% | |
| CCGGAATGACGATGATGAGC+CGG | - | chr3.3:42646373-42646392 | MS.gene30156:CDS | 55.0% | |
| CCGGCTCATCATCGTCATTC+CGG | + | chr3.3:42646376-42646395 | None:intergenic | 55.0% | |
| GCTACCGAGTCATACTTCCC+TGG | + | chr3.3:42643565-42643584 | None:intergenic | 55.0% | |
| GTCGGAGATCTTGGCCAAAC+TGG | - | chr3.3:42643757-42643776 | MS.gene30156:intron | 55.0% | |
| TTGGCATACGAAAGGTCGCC+AGG | + | chr3.3:42643841-42643860 | None:intergenic | 55.0% | |
| ! | ATTCCGGTGCCAACTCCAGA+AGG | + | chr3.3:42646360-42646379 | None:intergenic | 55.0% |
| !! | ATGCCTTCTGGAGTTGGCAC+CGG | - | chr3.3:42646354-42646373 | MS.gene30156:CDS | 55.0% |
| !! | GAGCTGGTGGTGTTTTGAGC+TGG | + | chr3.3:42643714-42643733 | None:intergenic | 55.0% |
| !! | GGTGTTTTGAGCTGGAGCTC+AGG | + | chr3.3:42643706-42643725 | None:intergenic | 55.0% |
| ACTGATGCGTGTCCGACACC+GGG | - | chr3.3:42644418-42644437 | MS.gene30156:intron | 60.0% | |
| CACTGATGCGTGTCCGACAC+CGG | - | chr3.3:42644417-42644436 | MS.gene30156:intron | 60.0% | |
| CAGGACCTTGTCCACCGCAT+CGG | + | chr3.3:42643687-42643706 | None:intergenic | 60.0% | |
| CATGGACATCGGGCACGACA+CGG | - | chr3.3:42644316-42644335 | MS.gene30156:intron | 60.0% | |
| ! | ACGCACTCCGCGCTGCTTTA+CGG | - | chr3.3:42645080-42645099 | MS.gene30156:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 42642106 | 42646490 | 42642106 | ID=MS.gene30156 |
| chr3.3 | mRNA | 42642106 | 42646490 | 42642106 | ID=MS.gene30156.t1;Parent=MS.gene30156 |
| chr3.3 | exon | 42646350 | 42646490 | 42646350 | ID=MS.gene30156.t1.exon1;Parent=MS.gene30156.t1 |
| chr3.3 | CDS | 42646350 | 42646490 | 42646350 | ID=cds.MS.gene30156.t1;Parent=MS.gene30156.t1 |
| chr3.3 | exon | 42644459 | 42645127 | 42644459 | ID=MS.gene30156.t1.exon2;Parent=MS.gene30156.t1 |
| chr3.3 | CDS | 42644459 | 42645127 | 42644459 | ID=cds.MS.gene30156.t1;Parent=MS.gene30156.t1 |
| chr3.3 | exon | 42642642 | 42642830 | 42642642 | ID=MS.gene30156.t1.exon3;Parent=MS.gene30156.t1 |
| chr3.3 | CDS | 42642642 | 42642830 | 42642642 | ID=cds.MS.gene30156.t1;Parent=MS.gene30156.t1 |
| chr3.3 | exon | 42642464 | 42642552 | 42642464 | ID=MS.gene30156.t1.exon4;Parent=MS.gene30156.t1 |
| chr3.3 | CDS | 42642464 | 42642552 | 42642464 | ID=cds.MS.gene30156.t1;Parent=MS.gene30156.t1 |
| chr3.3 | exon | 42642106 | 42642325 | 42642106 | ID=MS.gene30156.t1.exon5;Parent=MS.gene30156.t1 |
| chr3.3 | CDS | 42642106 | 42642325 | 42642106 | ID=cds.MS.gene30156.t1;Parent=MS.gene30156.t1 |
| Gene Sequence |
| Protein sequence |
