Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050332.t1 | XP_003625798.2 | 95.6 | 427 | 19 | 0 | 1 | 427 | 1 | 427 | 3.30E-251 | 877.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050332.t1 | Q9LXI7 | 63.5 | 422 | 148 | 5 | 10 | 426 | 6 | 426 | 2.7e-161 | 569.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050332.t1 | G7L619 | 95.6 | 427 | 19 | 0 | 1 | 427 | 1 | 427 | 2.4e-251 | 877.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene050332 | MS.gene82708 | PPI |
MS.gene050332 | MS.gene94357 | PPI |
MS.gene050332 | MS.gene82712 | PPI |
MS.gene30151 | MS.gene050332 | PPI |
MS.gene050332 | MS.gene30156 | PPI |
MS.gene94360 | MS.gene050332 | PPI |
MS.gene050332 | MS.gene027118 | PPI |
MS.gene050332 | MS.gene85567 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050332.t1 | MTR_7g104360 | 95.550 | 427 | 19 | 0 | 1 | 427 | 1 | 427 | 0.0 | 858 |
MS.gene050332.t1 | MTR_7g104330 | 61.000 | 400 | 153 | 2 | 27 | 425 | 34 | 431 | 0.0 | 535 |
MS.gene050332.t1 | MTR_1g060360 | 59.615 | 416 | 165 | 2 | 11 | 425 | 10 | 423 | 0.0 | 531 |
MS.gene050332.t1 | MTR_3g051240 | 61.519 | 395 | 147 | 4 | 27 | 419 | 22 | 413 | 6.44e-178 | 504 |
MS.gene050332.t1 | MTR_5g092360 | 60.652 | 399 | 150 | 4 | 27 | 421 | 26 | 421 | 5.83e-173 | 491 |
MS.gene050332.t1 | MTR_4g115670 | 41.990 | 412 | 210 | 9 | 30 | 416 | 40 | 447 | 1.81e-99 | 305 |
MS.gene050332.t1 | MTR_0188s0020 | 41.176 | 425 | 213 | 12 | 34 | 424 | 41 | 462 | 2.41e-95 | 294 |
MS.gene050332.t1 | MTR_4g037105 | 40.528 | 417 | 211 | 11 | 34 | 416 | 35 | 448 | 6.84e-90 | 280 |
MS.gene050332.t1 | MTR_3g083810 | 37.131 | 474 | 205 | 10 | 32 | 416 | 56 | 525 | 4.80e-88 | 278 |
MS.gene050332.t1 | MTR_6g013050 | 39.691 | 388 | 160 | 7 | 99 | 416 | 143 | 526 | 2.43e-87 | 277 |
MS.gene050332.t1 | MTR_1g112630 | 40.000 | 400 | 209 | 11 | 45 | 416 | 54 | 450 | 5.07e-87 | 273 |
MS.gene050332.t1 | MTR_3g083820 | 36.498 | 474 | 208 | 10 | 32 | 416 | 56 | 525 | 7.26e-87 | 275 |
MS.gene050332.t1 | MTR_7g056403 | 38.860 | 386 | 164 | 6 | 99 | 416 | 143 | 524 | 1.04e-84 | 269 |
MS.gene050332.t1 | MTR_6g013050 | 36.028 | 433 | 185 | 9 | 47 | 391 | 71 | 499 | 4.94e-78 | 251 |
MS.gene050332.t1 | MTR_4g037670 | 27.363 | 402 | 216 | 12 | 47 | 385 | 216 | 604 | 2.59e-33 | 132 |
MS.gene050332.t1 | MTR_1g052505 | 26.558 | 369 | 215 | 9 | 47 | 359 | 194 | 562 | 2.23e-32 | 129 |
MS.gene050332.t1 | MTR_4g082930 | 27.778 | 414 | 219 | 13 | 47 | 385 | 144 | 552 | 3.27e-30 | 123 |
MS.gene050332.t1 | MTR_3g074930 | 26.098 | 410 | 238 | 13 | 55 | 405 | 196 | 599 | 6.04e-30 | 122 |
MS.gene050332.t1 | MTR_4g082940 | 27.750 | 400 | 223 | 13 | 47 | 385 | 144 | 538 | 1.66e-29 | 121 |
MS.gene050332.t1 | MTR_3g074930 | 25.799 | 407 | 237 | 13 | 58 | 405 | 192 | 592 | 2.78e-29 | 120 |
MS.gene050332.t1 | MTR_4g103520 | 26.225 | 408 | 234 | 13 | 58 | 405 | 196 | 596 | 6.06e-27 | 114 |
MS.gene050332.t1 | MTR_4g103520 | 26.225 | 408 | 234 | 13 | 58 | 405 | 119 | 519 | 6.41e-27 | 113 |
MS.gene050332.t1 | MTR_5g045600 | 25.000 | 416 | 229 | 13 | 58 | 405 | 188 | 588 | 6.01e-25 | 107 |
MS.gene050332.t1 | MTR_3g074970 | 24.874 | 398 | 207 | 11 | 58 | 405 | 141 | 496 | 2.11e-24 | 105 |
MS.gene050332.t1 | MTR_8g063080 | 25.568 | 352 | 206 | 11 | 102 | 405 | 238 | 581 | 6.09e-22 | 98.6 |
MS.gene050332.t1 | MTR_5g092450 | 49.351 | 77 | 19 | 1 | 315 | 391 | 11 | 67 | 3.83e-15 | 70.9 |
MS.gene050332.t1 | MTR_5g092300 | 50.000 | 54 | 27 | 0 | 368 | 421 | 9 | 62 | 1.43e-12 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050332.t1 | AT3G52780 | 63.507 | 422 | 148 | 5 | 10 | 426 | 6 | 426 | 0.0 | 558 |
MS.gene050332.t1 | AT3G52820 | 61.323 | 393 | 149 | 2 | 28 | 419 | 28 | 418 | 2.69e-180 | 509 |
MS.gene050332.t1 | AT3G20500 | 57.210 | 423 | 170 | 5 | 12 | 426 | 5 | 424 | 4.83e-174 | 494 |
MS.gene050332.t1 | AT3G52810 | 53.052 | 426 | 189 | 3 | 11 | 427 | 7 | 430 | 1.23e-161 | 462 |
MS.gene050332.t1 | AT3G52780 | 61.677 | 334 | 122 | 5 | 10 | 338 | 6 | 338 | 1.35e-148 | 426 |
MS.gene050332.t1 | AT5G34850 | 40.967 | 393 | 205 | 8 | 45 | 412 | 52 | 442 | 8.05e-95 | 293 |
MS.gene050332.t1 | AT3G07130 | 40.992 | 383 | 157 | 6 | 99 | 416 | 137 | 515 | 1.17e-88 | 279 |
MS.gene050332.t1 | AT1G56360 | 39.604 | 404 | 209 | 11 | 45 | 416 | 48 | 448 | 2.58e-88 | 276 |
MS.gene050332.t1 | AT2G27190 | 38.776 | 441 | 229 | 12 | 11 | 416 | 19 | 453 | 7.71e-88 | 275 |
MS.gene050332.t1 | AT4G36350 | 39.120 | 409 | 215 | 11 | 39 | 416 | 43 | 448 | 2.56e-86 | 271 |
MS.gene050332.t1 | AT2G16430 | 35.217 | 460 | 252 | 12 | 12 | 427 | 11 | 468 | 2.04e-83 | 263 |
MS.gene050332.t1 | AT3G07130 | 37.740 | 416 | 157 | 7 | 99 | 416 | 137 | 548 | 7.48e-82 | 262 |
MS.gene050332.t1 | AT2G18130 | 37.722 | 395 | 206 | 8 | 45 | 416 | 52 | 429 | 9.01e-82 | 258 |
MS.gene050332.t1 | AT4G13700 | 38.727 | 377 | 174 | 7 | 47 | 370 | 65 | 437 | 2.04e-78 | 250 |
MS.gene050332.t1 | AT2G16430 | 38.081 | 344 | 183 | 8 | 112 | 427 | 7 | 348 | 1.95e-73 | 234 |
MS.gene050332.t1 | AT2G32770 | 37.692 | 390 | 166 | 6 | 99 | 414 | 146 | 532 | 2.47e-72 | 237 |
MS.gene050332.t1 | AT2G32770 | 37.705 | 366 | 151 | 6 | 99 | 390 | 65 | 427 | 2.55e-65 | 215 |
MS.gene050332.t1 | AT4G13700 | 36.471 | 340 | 159 | 7 | 47 | 333 | 65 | 400 | 1.98e-61 | 205 |
MS.gene050332.t1 | AT3G46120 | 35.000 | 400 | 157 | 13 | 45 | 416 | 52 | 376 | 4.58e-60 | 201 |
MS.gene050332.t1 | AT2G32770 | 33.590 | 390 | 153 | 7 | 99 | 414 | 146 | 503 | 1.18e-56 | 195 |
MS.gene050332.t1 | AT1G52940 | 36.245 | 229 | 130 | 6 | 45 | 257 | 13 | 241 | 1.15e-35 | 132 |
MS.gene050332.t1 | AT2G03450 | 26.852 | 432 | 241 | 13 | 47 | 407 | 143 | 570 | 9.50e-32 | 128 |
MS.gene050332.t1 | AT1G13900 | 27.361 | 413 | 224 | 11 | 47 | 388 | 145 | 552 | 4.78e-31 | 126 |
MS.gene050332.t1 | AT5G50400 | 25.549 | 364 | 191 | 10 | 102 | 405 | 165 | 508 | 2.91e-25 | 108 |
MS.gene050332.t1 | AT5G50400 | 25.549 | 364 | 191 | 10 | 102 | 405 | 237 | 580 | 3.51e-25 | 108 |
MS.gene050332.t1 | AT1G13750 | 25.616 | 406 | 239 | 13 | 58 | 405 | 182 | 582 | 3.10e-22 | 99.8 |
MS.gene050332.t1 | AT4G24890 | 25.143 | 350 | 206 | 9 | 102 | 403 | 241 | 582 | 7.63e-22 | 98.6 |
Find 115 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGCTTGGCTTTCTTGATTT+TGG | 0.113918 | 7.2:-8429695 | MS.gene050332:CDS |
CGGATTCTTCACAATATAAA+TGG | 0.234250 | 7.2:-8422025 | MS.gene050332:CDS |
GAAATTCACAATGTCGTAAT+TGG | 0.266816 | 7.2:-8427806 | MS.gene050332:CDS |
GCTCAATTTCCTATCAAGTT+TGG | 0.270262 | 7.2:-8427707 | MS.gene050332:CDS |
GTTTCAACATTGAAGCATTT+AGG | 0.285278 | 7.2:-8422350 | MS.gene050332:CDS |
AGCCGGAGATATCACTATTC+AGG | 0.296214 | 7.2:-8421308 | MS.gene050332:CDS |
CGGTAGTAGTAGACTGTATT+AGG | 0.306177 | 7.2:+8427773 | None:intergenic |
GGGATTTACAGAAGGTTAAC+AGG | 0.315844 | 7.2:-8421995 | MS.gene050332:CDS |
ATGGGACTCCTTTGGTCGTT+TGG | 0.324190 | 7.2:-8422261 | MS.gene050332:CDS |
ACACGGGTTTATAAAGATAA+AGG | 0.345618 | 7.2:-8421565 | MS.gene050332:CDS |
CCTATCAAGTTTGGAGTAGT+TGG | 0.351322 | 7.2:-8427698 | MS.gene050332:intron |
CATTATGCTCTTTACGAGTC+TGG | 0.351625 | 7.2:-8427830 | MS.gene050332:CDS |
GGCGTTCATGTTATCATGTT+GGG | 0.362060 | 7.2:-8422068 | MS.gene050332:CDS |
TTAAAATGTGCAGGAGATCT+TGG | 0.371273 | 7.2:-8422389 | MS.gene050332:intron |
CCAACTACTCCAAACTTGAT+AGG | 0.374281 | 7.2:+8427698 | None:intergenic |
TAATGTACTGTTGCTGGAGT+TGG | 0.378392 | 7.2:+8427908 | None:intergenic |
TAATTCTAATGAAGCTCATC+AGG | 0.380523 | 7.2:-8421928 | MS.gene050332:CDS |
CAAAATTTATGGGACTCCTT+TGG | 0.387876 | 7.2:-8422269 | MS.gene050332:CDS |
CTATTCAGGGAGGCTAGCTT+TGG | 0.390382 | 7.2:-8421294 | MS.gene050332:CDS |
TACAGTCTACTACTACCGTT+TGG | 0.396619 | 7.2:-8427768 | MS.gene050332:CDS |
ATATCTCCGGCTTAGGATCT+TGG | 0.405801 | 7.2:+8421319 | None:intergenic |
TCACAATATAAATGGCTTCA+AGG | 0.411262 | 7.2:-8422017 | MS.gene050332:CDS |
TCTGATCCACTTTCTTCAAA+TGG | 0.413507 | 7.2:+8422122 | None:intergenic |
CATTTATATTGTGAAGAATC+CGG | 0.413645 | 7.2:+8422026 | None:intergenic |
AATGGCTCTTTGTGGACAAC+TGG | 0.417454 | 7.2:+8422173 | None:intergenic |
TGAAGAATCCGGGGCAAAAT+CGG | 0.417615 | 7.2:+8422037 | None:intergenic |
CATGGACGTTGGCTTGCATA+TGG | 0.419335 | 7.2:+8422233 | None:intergenic |
GTCCAGTGCATATTACCATT+GGG | 0.419767 | 7.2:-8421531 | MS.gene050332:CDS |
CGTCCATGGATGGTCACTTC+AGG | 0.422256 | 7.2:-8422218 | MS.gene050332:CDS |
CTGTTGTTAGTGACTCTGTT+TGG | 0.424993 | 7.2:-8421200 | MS.gene050332:CDS |
CACAATATAAATGGCTTCAA+GGG | 0.433408 | 7.2:-8422016 | MS.gene050332:CDS |
GCAAACGCACTTTCTGCTAC+TGG | 0.439584 | 7.2:-8427869 | MS.gene050332:CDS |
ATGCTGTGAATGGCTCTTTG+TGG | 0.445955 | 7.2:+8422165 | None:intergenic |
GGGCCGTAATGTACTGTTGC+TGG | 0.451978 | 7.2:+8427902 | None:intergenic |
AAGTTATTCTCATCTTGTCT+TGG | 0.452713 | 7.2:+8427945 | None:intergenic |
TGATGACTCATCGCCACAAC+AGG | 0.452995 | 7.2:-8429596 | MS.gene050332:intron |
CTGGAATCTTCTCAATATCA+TGG | 0.462576 | 7.2:+8422192 | None:intergenic |
AATGTACTGTTGCTGGAGTT+GGG | 0.467070 | 7.2:+8427909 | None:intergenic |
TTATTTATTACCTTGTGGCT+AGG | 0.467832 | 7.2:+8421488 | None:intergenic |
TGGTGTTGGTTCATGCTCCT+TGG | 0.467959 | 7.2:-8421953 | MS.gene050332:CDS |
ACACATCAAAAGAATAGTAT+AGG | 0.472739 | 7.2:+8422093 | None:intergenic |
AACTCCTTGGGTAGTGGTGT+TGG | 0.478876 | 7.2:-8421967 | MS.gene050332:CDS |
TGGCGTTCATGTTATCATGT+TGG | 0.483228 | 7.2:-8422069 | MS.gene050332:CDS |
TCCCCAATGGTAATATGCAC+TGG | 0.487432 | 7.2:+8421529 | None:intergenic |
AATAGTGATATCTCCGGCTT+AGG | 0.487856 | 7.2:+8421312 | None:intergenic |
ATTTATATTGTGAAGAATCC+GGG | 0.492291 | 7.2:+8422027 | None:intergenic |
AGTGCGTTTGCTGAAGGAGA+TGG | 0.500114 | 7.2:+8427881 | None:intergenic |
CATCACATGCACTTTGGAGT+TGG | 0.502395 | 7.2:-8421245 | MS.gene050332:CDS |
TGGTCGATTGTAGCAATAAA+CGG | 0.502539 | 7.2:+8429654 | None:intergenic |
CAGACTCGTAAAGAGCATAA+TGG | 0.503425 | 7.2:+8427831 | None:intergenic |
GGTCCAGTGCATATTACCAT+TGG | 0.503837 | 7.2:-8421532 | MS.gene050332:CDS |
CAAACAGAGTCACTAACAAC+AGG | 0.504537 | 7.2:+8421201 | None:intergenic |
AAAATCAAGAAAGCCAAGCC+TGG | 0.505701 | 7.2:+8429697 | None:intergenic |
GTATATCAAGCTTTACAAGC+GGG | 0.505973 | 7.2:+8421156 | None:intergenic |
GCCGGAGATATCACTATTCA+GGG | 0.507404 | 7.2:-8421307 | MS.gene050332:CDS |
ACAGTCTACTACTACCGTTT+GGG | 0.511791 | 7.2:-8427767 | MS.gene050332:CDS |
GAAAACAAAATGGGATTCAA+AGG | 0.511997 | 7.2:-8429730 | None:intergenic |
CTTGCATTGTATGCTGTGAA+TGG | 0.517458 | 7.2:+8422155 | None:intergenic |
CATATGCAAGCCAACGTCCA+TGG | 0.524535 | 7.2:-8422232 | MS.gene050332:CDS |
ATGTCGTAATTGGTCCCCTC+AGG | 0.528114 | 7.2:-8427796 | MS.gene050332:CDS |
TCTGCGTAGGATAAGTCTCC+TGG | 0.542667 | 7.2:+8422299 | None:intergenic |
TACAAGCGGGGTCAGAGGAA+AGG | 0.545501 | 7.2:+8421169 | None:intergenic |
TTTCCTGAAGTGACCATCCA+TGG | 0.549326 | 7.2:+8422215 | None:intergenic |
CAAATGCCATTTGAAGAAAG+TGG | 0.549954 | 7.2:-8422128 | MS.gene050332:CDS |
GTGCGTTTGCTGAAGGAGAT+GGG | 0.554869 | 7.2:+8427882 | None:intergenic |
TTAATGCATCACATGCACTT+TGG | 0.559271 | 7.2:-8421251 | MS.gene050332:CDS |
GCAGAAAGTGCGTTTGCTGA+AGG | 0.564712 | 7.2:+8427875 | None:intergenic |
AGCATAATGGTAAGAAGTGG+TGG | 0.564797 | 7.2:+8427844 | None:intergenic |
AAAGATAAAGGTGACAATTG+TGG | 0.564863 | 7.2:-8421553 | MS.gene050332:CDS |
GCTTCAAGGGGATTTACAGA+AGG | 0.567207 | 7.2:-8422003 | MS.gene050332:CDS |
AAGACAAGATGAGAATAACT+TGG | 0.568409 | 7.2:-8427943 | MS.gene050332:CDS |
CATATTACCATTGGGGATGG+AGG | 0.568634 | 7.2:-8421523 | MS.gene050332:CDS |
GTGCATATTACCATTGGGGA+TGG | 0.568742 | 7.2:-8421526 | MS.gene050332:CDS |
TTGGCATAAGAATGATAATG+AGG | 0.569656 | 7.2:-8421226 | MS.gene050332:CDS |
AGCTTTACAAGCGGGGTCAG+AGG | 0.579456 | 7.2:+8421164 | None:intergenic |
ACTCCAGCAACAGTACATTA+CGG | 0.579797 | 7.2:-8427905 | MS.gene050332:CDS |
TGCAAGCCAACGTCCATGGA+TGG | 0.582098 | 7.2:-8422228 | MS.gene050332:CDS |
TACGATATGCTATTATTACC+AGG | 0.585952 | 7.2:-8422317 | MS.gene050332:CDS |
TAATGAAGCTCATCAGGGTG+AGG | 0.588950 | 7.2:-8421922 | MS.gene050332:CDS |
GTAGGTACATATATCTCAAG+TGG | 0.589069 | 7.2:-8427969 | MS.gene050332:intron |
AATACTTACAAAGCGTTCGT+AGG | 0.596937 | 7.2:+8421815 | None:intergenic |
ACAATATAAATGGCTTCAAG+GGG | 0.601935 | 7.2:-8422015 | MS.gene050332:CDS |
AGGGAGGCTAGCTTTGGACA+TGG | 0.606219 | 7.2:-8421288 | MS.gene050332:CDS |
CATTCACAGCATACAATGCA+AGG | 0.607221 | 7.2:-8422154 | MS.gene050332:CDS |
TCCCTGAATAGTGATATCTC+CGG | 0.607511 | 7.2:+8421306 | None:intergenic |
TGGTTCAACCAAACGACCAA+AGG | 0.610386 | 7.2:+8422253 | None:intergenic |
ACGATTGCCTCCATCCCCAA+TGG | 0.611597 | 7.2:+8421516 | None:intergenic |
CTTTGGACATGGAGTACTAG+AGG | 0.617779 | 7.2:-8421277 | MS.gene050332:CDS |
AGTAGACTGTATTAGGCCTG+AGG | 0.623439 | 7.2:+8427780 | None:intergenic |
TGTTGACATGAAGAATGCAA+TGG | 0.623954 | 7.2:-8421892 | MS.gene050332:CDS |
GTAGACTGTATTAGGCCTGA+GGG | 0.626445 | 7.2:+8427781 | None:intergenic |
AACTTGATAGGAAATTGAGC+TGG | 0.627265 | 7.2:+8427710 | None:intergenic |
ATCGTGAAGGCCTAGCCACA+AGG | 0.627603 | 7.2:-8421498 | MS.gene050332:intron |
GGGGATGGAGGCAATCGTGA+AGG | 0.629344 | 7.2:-8421511 | MS.gene050332:CDS |
TGAACCAACACCACTACCCA+AGG | 0.629873 | 7.2:+8421963 | None:intergenic |
TATATCAAGCTTTACAAGCG+GGG | 0.636544 | 7.2:+8421157 | None:intergenic |
GGATTTACAGAAGGTTAACA+GGG | 0.636624 | 7.2:-8421994 | MS.gene050332:CDS |
TAGGTACCAAGATCCTAAGC+CGG | 0.637082 | 7.2:-8421325 | MS.gene050332:CDS |
AAGAGCATAATGGTAAGAAG+TGG | 0.638792 | 7.2:+8427841 | None:intergenic |
TAGGTACATATATCTCAAGT+GGG | 0.638879 | 7.2:-8427968 | MS.gene050332:CDS |
GATGAGTCATCAAGATCGTG+AGG | 0.640370 | 7.2:+8429607 | None:intergenic |
TCCAGTGCATATTACCATTG+GGG | 0.646566 | 7.2:-8421530 | MS.gene050332:CDS |
GACATGAAGAATGCAATGGA+AGG | 0.648913 | 7.2:-8421888 | MS.gene050332:CDS |
TTTATATTGTGAAGAATCCG+GGG | 0.656506 | 7.2:+8422028 | None:intergenic |
AATTCTAATGAAGCTCATCA+GGG | 0.664651 | 7.2:-8421927 | MS.gene050332:CDS |
AGTATATCAAGCTTTACAAG+CGG | 0.674326 | 7.2:+8421155 | None:intergenic |
TGGACATGGAGTACTAGAGG+TGG | 0.683228 | 7.2:-8421274 | MS.gene050332:CDS |
GAGATCTTGGACAAACAGAG+TGG | 0.690863 | 7.2:-8422376 | MS.gene050332:CDS |
ATGAGTCATCAAGATCGTGA+GGG | 0.692801 | 7.2:+8429608 | None:intergenic |
GCTTCATTAGAATTATACCA+AGG | 0.697694 | 7.2:+8421936 | None:intergenic |
AAGTGACCATCCATGGACGT+TGG | 0.704794 | 7.2:+8422222 | None:intergenic |
TAGACTGTATTAGGCCTGAG+GGG | 0.723441 | 7.2:+8427782 | None:intergenic |
GGAGATATCACTATTCAGGG+AGG | 0.752640 | 7.2:-8421304 | MS.gene050332:CDS |
TCACAGCATACAATGCAAGG+TGG | 0.758498 | 7.2:-8422151 | MS.gene050332:CDS |
GATTTACAGAAGGTTAACAG+GGG | 0.767404 | 7.2:-8421993 | MS.gene050332:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 8421161 | 8429743 | 8421161 | ID=MS.gene050332 |
chr7.2 | mRNA | 8421161 | 8429743 | 8421161 | ID=MS.gene050332.t1;Parent=MS.gene050332 |
chr7.2 | exon | 8429597 | 8429743 | 8429597 | ID=MS.gene050332.t1.exon1;Parent=MS.gene050332.t1 |
chr7.2 | CDS | 8429597 | 8429743 | 8429597 | ID=cds.MS.gene050332.t1;Parent=MS.gene050332.t1 |
chr7.2 | exon | 8427699 | 8427987 | 8427699 | ID=MS.gene050332.t1.exon2;Parent=MS.gene050332.t1 |
chr7.2 | CDS | 8427699 | 8427987 | 8427699 | ID=cds.MS.gene050332.t1;Parent=MS.gene050332.t1 |
chr7.2 | exon | 8421824 | 8422398 | 8421824 | ID=MS.gene050332.t1.exon3;Parent=MS.gene050332.t1 |
chr7.2 | CDS | 8421824 | 8422398 | 8421824 | ID=cds.MS.gene050332.t1;Parent=MS.gene050332.t1 |
chr7.2 | exon | 8421499 | 8421587 | 8421499 | ID=MS.gene050332.t1.exon4;Parent=MS.gene050332.t1 |
chr7.2 | CDS | 8421499 | 8421587 | 8421499 | ID=cds.MS.gene050332.t1;Parent=MS.gene050332.t1 |
chr7.2 | exon | 8421161 | 8421344 | 8421161 | ID=MS.gene050332.t1.exon5;Parent=MS.gene050332.t1 |
chr7.2 | CDS | 8421161 | 8421344 | 8421161 | ID=cds.MS.gene050332.t1;Parent=MS.gene050332.t1 |
Gene Sequence |
Protein sequence |