AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24727

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24727.t1 MTR_7g104360 93.287 432 24 1 1 432 1 427 0.0 840
MS.gene24727.t1 MTR_7g104330 59.012 405 158 3 27 430 34 431 0.0 518
MS.gene24727.t1 MTR_1g060360 57.720 421 170 3 11 430 10 423 0.0 515
MS.gene24727.t1 MTR_3g051240 59.500 400 152 5 27 424 22 413 2.31e-171 487
MS.gene24727.t1 MTR_5g092360 58.663 404 155 5 27 426 26 421 3.95e-166 474
MS.gene24727.t1 MTR_4g115670 41.190 420 207 11 30 421 40 447 1.85e-96 298
MS.gene24727.t1 MTR_0188s0020 40.326 429 214 13 34 428 41 461 1.16e-92 288
MS.gene24727.t1 MTR_4g037105 39.480 423 214 12 33 421 34 448 8.52e-87 272
MS.gene24727.t1 MTR_1g112630 39.012 405 211 12 45 421 54 450 3.94e-84 265
MS.gene24727.t1 MTR_3g083810 35.908 479 209 11 32 421 56 525 1.05e-82 264
MS.gene24727.t1 MTR_6g013050 34.839 465 204 11 47 421 71 526 1.44e-81 262
MS.gene24727.t1 MTR_3g083820 35.282 479 212 11 32 421 56 525 1.54e-81 261
MS.gene24727.t1 MTR_7g056403 37.340 391 168 7 99 421 143 524 2.60e-79 255
MS.gene24727.t1 MTR_6g013050 34.475 438 190 10 47 396 71 499 3.63e-72 236
MS.gene24727.t1 MTR_4g037670 27.431 401 222 12 47 390 216 604 2.20e-34 135
MS.gene24727.t1 MTR_1g052505 26.829 369 219 8 47 364 194 562 3.20e-34 135
MS.gene24727.t1 MTR_4g082930 27.494 411 229 12 47 390 144 552 1.01e-30 125
MS.gene24727.t1 MTR_4g082940 27.500 400 229 13 47 390 144 538 7.52e-30 122
MS.gene24727.t1 MTR_3g074930 26.161 409 244 13 55 410 196 599 8.44e-30 122
MS.gene24727.t1 MTR_3g074930 25.862 406 243 13 58 410 192 592 3.04e-29 120
MS.gene24727.t1 MTR_4g103520 26.420 405 242 11 58 410 119 519 4.02e-27 114
MS.gene24727.t1 MTR_4g103520 26.420 405 242 11 58 410 196 596 5.61e-27 114
MS.gene24727.t1 MTR_5g045600 25.743 404 242 11 58 408 188 586 6.98e-25 107
MS.gene24727.t1 MTR_3g074970 25.062 403 205 12 58 410 141 496 1.21e-23 103
MS.gene24727.t1 MTR_8g063080 25.071 351 218 9 102 412 238 583 1.49e-21 97.8
MS.gene24727.t1 MTR_5g092450 49.351 77 19 1 320 396 11 67 3.46e-15 70.9
MS.gene24727.t1 MTR_5g092300 50.000 54 27 0 373 426 9 62 1.31e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24727.t1 AT3G52780 61.593 427 153 6 10 431 6 426 0.0 541
MS.gene24727.t1 AT3G52820 59.548 398 153 3 28 424 28 418 3.94e-175 497
MS.gene24727.t1 AT3G20500 55.374 428 175 6 12 431 5 424 3.18e-167 477
MS.gene24727.t1 AT3G52810 51.508 431 193 4 11 432 7 430 3.36e-157 451
MS.gene24727.t1 AT3G52780 59.292 339 127 6 10 343 6 338 8.89e-142 409
MS.gene24727.t1 AT5G34850 39.698 398 208 9 45 417 52 442 4.99e-91 283
MS.gene24727.t1 AT1G56360 38.631 409 211 12 45 421 48 448 4.50e-85 268
MS.gene24727.t1 AT3G07130 39.433 388 161 7 99 421 137 515 2.57e-83 265
MS.gene24727.t1 AT2G27190 37.808 447 230 14 11 421 19 453 4.26e-83 263
MS.gene24727.t1 AT4G36350 37.923 414 218 12 39 421 43 448 8.68e-83 262
MS.gene24727.t1 AT2G16430 34.947 475 256 15 2 432 3 468 3.59e-80 255
MS.gene24727.t1 AT2G18130 36.750 400 208 9 45 421 52 429 7.53e-79 251
MS.gene24727.t1 AT3G07130 36.342 421 161 8 99 421 137 548 1.55e-76 249
MS.gene24727.t1 AT4G13700 36.911 382 179 8 47 375 65 437 8.22e-72 233
MS.gene24727.t1 AT2G16430 37.249 349 184 9 112 432 7 348 7.35e-70 225
MS.gene24727.t1 AT2G32770 36.203 395 170 7 99 419 146 532 2.73e-67 224
MS.gene24727.t1 AT2G32770 36.119 371 155 7 99 395 65 427 1.89e-60 203
MS.gene24727.t1 AT3G46120 34.080 402 163 12 45 421 52 376 4.65e-60 201
MS.gene24727.t1 AT2G32770 32.911 395 154 7 99 419 146 503 2.89e-55 191
MS.gene24727.t1 AT4G13700 34.493 345 164 8 47 338 65 400 9.05e-55 187
MS.gene24727.t1 AT1G52940 34.615 234 132 7 45 262 13 241 7.33e-33 124
MS.gene24727.t1 AT2G03450 26.620 432 247 12 47 412 143 570 2.30e-32 130
MS.gene24727.t1 AT1G13900 27.107 439 246 13 47 419 145 575 9.23e-31 125
MS.gene24727.t1 AT5G50400 25.852 352 210 8 102 410 165 508 6.03e-26 110
MS.gene24727.t1 AT5G50400 25.852 352 210 8 102 410 237 580 8.22e-26 110
MS.gene24727.t1 AT1G13750 26.108 406 242 13 58 410 182 582 5.33e-23 102
MS.gene24727.t1 AT4G24890 25.429 350 210 8 102 408 241 582 6.91e-23 101

Find 126 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCTTGGCTTTCTTGATTT+TGG 0.113918 7.4:+7346382 MS.gene24727:CDS
CGGATTCTTCACAATATAAA+TGG 0.234250 7.4:+7349384 MS.gene24727:CDS
GGCCCATAGCCCGTCGAGGC+TGG 0.258329 7.4:-7349286 None:intergenic
GAAATTCACAATGTCGTAAT+TGG 0.266816 7.4:+7348271 MS.gene24727:CDS
GCTCAATTTCCTATCAAGTT+TGG 0.270262 7.4:+7348370 MS.gene24727:CDS
GTTTCAACATTGAAGCATTT+AGG 0.285278 7.4:+7348719 MS.gene24727:CDS
AGCCGGAGATATCACTATTC+AGG 0.296214 7.4:+7350101 MS.gene24727:CDS
CGGTAGTAGTAGACTGTATT+AGG 0.306177 7.4:-7348304 None:intergenic
GGGATTTACAGAAGGTTAAC+AGG 0.315844 7.4:+7349414 MS.gene24727:CDS
ATGGGACTCCTTTGGTCGTT+TGG 0.324190 7.4:+7348808 MS.gene24727:CDS
ACACGGGTTTATAAAGATAA+AGG 0.345618 7.4:+7349844 MS.gene24727:CDS
AGCCCAGCCTCGACGGGCTA+TGG 0.348035 7.4:+7349283 MS.gene24727:intron
CCTATCAAGTTTGGAGTAGT+TGG 0.351322 7.4:+7348379 MS.gene24727:CDS
CATTATGCTCTTTACGAGTC+TGG 0.351625 7.4:+7348247 MS.gene24727:CDS
GGCGTTCATGTTATCATGTT+GGG 0.362060 7.4:+7349341 MS.gene24727:CDS
TTAAAATGTGCAGGAGATCT+TGG 0.371273 7.4:+7348680 MS.gene24727:intron
CCAACTACTCCAAACTTGAT+AGG 0.374281 7.4:-7348379 None:intergenic
TAATGTACTGTTGCTGGAGT+TGG 0.378392 7.4:-7348169 None:intergenic
TAATTCTAATGAAGCTCATC+AGG 0.380523 7.4:+7349481 MS.gene24727:CDS
CAAAATTTATGGGACTCCTT+TGG 0.387876 7.4:+7348800 MS.gene24727:CDS
CTATTCAGGGAGGCTAGCTT+TGG 0.390382 7.4:+7350115 MS.gene24727:CDS
TACAGTCTACTACTACCGTT+TGG 0.396619 7.4:+7348309 MS.gene24727:CDS
ATATCTCCGGCTTAGGATCT+TGG 0.405801 7.4:-7350090 None:intergenic
TCACAATATAAATGGCTTCA+AGG 0.411262 7.4:+7349392 MS.gene24727:CDS
TCTGATCCACTTTCTTCAAA+TGG 0.413507 7.4:-7348947 None:intergenic
CATTTATATTGTGAAGAATC+CGG 0.413645 7.4:-7349383 None:intergenic
GTGCCGTAGCCCAGCCTCGA+CGG 0.416297 7.4:+7349276 MS.gene24727:intron
AATGGCTCTTTGTGGACAAC+TGG 0.417454 7.4:-7348896 None:intergenic
TGAAGAATCCGGGGCAAAAT+CGG 0.417615 7.4:-7349372 None:intergenic
CATGGACGTTGGCTTGCATA+TGG 0.419335 7.4:-7348836 None:intergenic
GTCCAGTGCATATTACCATT+GGG 0.419767 7.4:+7349878 MS.gene24727:CDS
CTGTTGTTAGTGACTCTGTT+TGG 0.424993 7.4:+7350209 MS.gene24727:CDS
CACAATATAAATGGCTTCAA+GGG 0.433408 7.4:+7349393 MS.gene24727:CDS
GCAAACGCACTTTCTGCTAC+TGG 0.439584 7.4:+7348208 MS.gene24727:CDS
ATGCTGTGAATGGCTCTTTG+TGG 0.445955 7.4:-7348904 None:intergenic
AGAAAACAAAATGAGATTGA+AGG 0.450243 7.4:+7346346 None:intergenic
GGGCCGTAATGTACTGTTGC+TGG 0.451978 7.4:-7348175 None:intergenic
AAGTTATTCTCATCTTGTCT+TGG 0.452713 7.4:-7348132 None:intergenic
TGATGACTCATCGCCACAAC+AGG 0.452995 7.4:+7346481 MS.gene24727:CDS
GCCCATAGCCCGTCGAGGCT+GGG 0.461747 7.4:-7349285 None:intergenic
CTGGAATCTTCTCAATATCA+TGG 0.462576 7.4:-7348877 None:intergenic
ATCAAAAGAATAGTATAGGC+AGG 0.462818 7.4:-7349312 None:intergenic
ACACATCAAAAGAATAGTAT+AGG 0.464271 7.4:-7349316 None:intergenic
AATGTACTGTTGCTGGAGTT+GGG 0.467070 7.4:-7348168 None:intergenic
TTATTTATTACCTTGTGGCT+AGG 0.467832 7.4:-7349921 None:intergenic
TGGTGTTGGTTCATGCTCCT+TGG 0.467959 7.4:+7349456 MS.gene24727:CDS
AGCCTCGACGGGCTATGGGC+CGG 0.470008 7.4:+7349288 MS.gene24727:CDS
AACTCCTTGGGTAGTGGTGT+TGG 0.478876 7.4:+7349442 MS.gene24727:CDS
TGCCGTAGCCCAGCCTCGAC+GGG 0.480273 7.4:+7349277 MS.gene24727:intron
TGGCGTTCATGTTATCATGT+TGG 0.483228 7.4:+7349340 MS.gene24727:CDS
TCCCCAATGGTAATATGCAC+TGG 0.487432 7.4:-7349880 None:intergenic
AATAGTGATATCTCCGGCTT+AGG 0.487856 7.4:-7350097 None:intergenic
ATTTATATTGTGAAGAATCC+GGG 0.492291 7.4:-7349382 None:intergenic
AGTGCGTTTGCTGAAGGAGA+TGG 0.500114 7.4:-7348196 None:intergenic
TGGTCGATTGTAGCAATAAA+CGG 0.502539 7.4:-7346423 None:intergenic
CAGACTCGTAAAGAGCATAA+TGG 0.503425 7.4:-7348246 None:intergenic
GGTCCAGTGCATATTACCAT+TGG 0.503837 7.4:+7349877 MS.gene24727:CDS
CAAACAGAGTCACTAACAAC+AGG 0.504537 7.4:-7350208 None:intergenic
AAAATCAAGAAAGCCAAGCC+TGG 0.505701 7.4:-7346380 None:intergenic
GCCGGAGATATCACTATTCA+GGG 0.507404 7.4:+7350102 MS.gene24727:CDS
ACAGTCTACTACTACCGTTT+GGG 0.511791 7.4:+7348310 MS.gene24727:CDS
CATCACATGCACTTTGGAGT+TGG 0.513462 7.4:+7350164 MS.gene24727:CDS
CTTGCATTGTATGCTGTGAA+TGG 0.517458 7.4:-7348914 None:intergenic
CATATGCAAGCCAACGTCCA+TGG 0.524535 7.4:+7348837 MS.gene24727:CDS
GAAAACAAAATGAGATTGAA+GGG 0.525206 7.4:+7346347 None:intergenic
TTATATCAAGCTTTACAAGC+GGG 0.525253 7.4:-7350253 None:intergenic
ATGTCGTAATTGGTCCCCTC+AGG 0.528114 7.4:+7348281 MS.gene24727:CDS
GCCCAGCCTCGACGGGCTAT+GGG 0.532576 7.4:+7349284 MS.gene24727:intron
AAGAATAGTATAGGCAGGGC+CGG 0.540235 7.4:-7349307 None:intergenic
TCTGCGTAGGATAAGTCTCC+TGG 0.542667 7.4:-7348770 None:intergenic
TACAAGCGGGGTCAGAGGAA+AGG 0.545501 7.4:-7350240 None:intergenic
TTAACGCATCACATGCACTT+TGG 0.554229 7.4:+7350158 MS.gene24727:CDS
GTGCGTTTGCTGAAGGAGAT+GGG 0.554869 7.4:-7348195 None:intergenic
CGTCCATGGATGGTCACTAC+AGG 0.563495 7.4:+7348851 MS.gene24727:CDS
GCAGAAAGTGCGTTTGCTGA+AGG 0.564712 7.4:-7348202 None:intergenic
AGCATAATGGTAAGAAGTGG+TGG 0.564797 7.4:-7348233 None:intergenic
AAAGATAAAGGTGACAATTG+TGG 0.564863 7.4:+7349856 MS.gene24727:CDS
GCTTCAAGGGGATTTACAGA+AGG 0.567207 7.4:+7349406 MS.gene24727:CDS
AAGACAAGATGAGAATAACT+TGG 0.568409 7.4:+7348134 MS.gene24727:CDS
TTTCCTGTAGTGACCATCCA+TGG 0.568592 7.4:-7348854 None:intergenic
CATATTACCATTGGGGATGG+AGG 0.568634 7.4:+7349886 MS.gene24727:CDS
GTGCATATTACCATTGGGGA+TGG 0.568742 7.4:+7349883 MS.gene24727:CDS
TTGGCATAAGAATGATAATG+AGG 0.569656 7.4:+7350183 MS.gene24727:CDS
AGCTTTACAAGCGGGGTCAG+AGG 0.579456 7.4:-7350245 None:intergenic
ACTCCAGCAACAGTACATTA+CGG 0.579797 7.4:+7348172 MS.gene24727:CDS
TGCAAGCCAACGTCCATGGA+TGG 0.582098 7.4:+7348841 MS.gene24727:CDS
TACGATATGCTATTATTACC+AGG 0.585952 7.4:+7348752 MS.gene24727:CDS
TAATGAAGCTCATCAGGGTG+AGG 0.588950 7.4:+7349487 MS.gene24727:CDS
GTAGGTACATATATCTCAAG+TGG 0.589069 7.4:+7348108 MS.gene24727:intron
AATACTTACAAAGCGTTCGT+AGG 0.596937 7.4:-7349594 None:intergenic
ACAATATAAATGGCTTCAAG+GGG 0.601935 7.4:+7349394 MS.gene24727:CDS
TATATCAAGCTTTACAAGCG+GGG 0.605982 7.4:-7350252 None:intergenic
AGGGAGGCTAGCTTTGGACA+TGG 0.606219 7.4:+7350121 MS.gene24727:CDS
CATTCACAGCATACAATGCA+AGG 0.607221 7.4:+7348915 MS.gene24727:CDS
TCCCTGAATAGTGATATCTC+CGG 0.607511 7.4:-7350103 None:intergenic
TGGTTCAACCAAACGACCAA+AGG 0.610386 7.4:-7348816 None:intergenic
ACGATTGCCTCCATCCCCAA+TGG 0.611597 7.4:-7349893 None:intergenic
CTTTGGACATGGAGTACTAG+AGG 0.617779 7.4:+7350132 MS.gene24727:CDS
ATTATATCAAGCTTTACAAG+CGG 0.619234 7.4:-7350254 None:intergenic
AGTAGACTGTATTAGGCCTG+AGG 0.623439 7.4:-7348297 None:intergenic
TGTTGACATGAAGAATGCAA+TGG 0.623954 7.4:+7349517 MS.gene24727:CDS
GTAGACTGTATTAGGCCTGA+GGG 0.626445 7.4:-7348296 None:intergenic
AACTTGATAGGAAATTGAGC+TGG 0.627265 7.4:-7348367 None:intergenic
ATCGTGAAGGCCTAGCCACA+AGG 0.627603 7.4:+7349911 MS.gene24727:CDS
GGGGATGGAGGCAATCGTGA+AGG 0.629344 7.4:+7349898 MS.gene24727:CDS
TGAACCAACACCACTACCCA+AGG 0.629873 7.4:-7349446 None:intergenic
TCAAAAGAATAGTATAGGCA+GGG 0.632649 7.4:-7349311 None:intergenic
GGCCGGCCCATAGCCCGTCG+AGG 0.633041 7.4:-7349290 None:intergenic
GGATTTACAGAAGGTTAACA+GGG 0.636624 7.4:+7349415 MS.gene24727:CDS
TAGGTACCAAGATCCTAAGC+CGG 0.637082 7.4:+7350084 MS.gene24727:intron
AAGAGCATAATGGTAAGAAG+TGG 0.638792 7.4:-7348236 None:intergenic
TAGGTACATATATCTCAAGT+GGG 0.638879 7.4:+7348109 MS.gene24727:intron
GATGAGTCATCAAGATCGTG+AGG 0.640370 7.4:-7346470 None:intergenic
TCCAGTGCATATTACCATTG+GGG 0.646566 7.4:+7349879 MS.gene24727:CDS
GACATGAAGAATGCAATGGA+AGG 0.648913 7.4:+7349521 MS.gene24727:CDS
TTTATATTGTGAAGAATCCG+GGG 0.656506 7.4:-7349381 None:intergenic
AATTCTAATGAAGCTCATCA+GGG 0.664651 7.4:+7349482 MS.gene24727:CDS
TGGACATGGAGTACTAGAGG+TGG 0.683228 7.4:+7350135 MS.gene24727:CDS
GAGATCTTGGACAAACAGAG+TGG 0.690863 7.4:+7348693 MS.gene24727:CDS
ATGAGTCATCAAGATCGTGA+GGG 0.692801 7.4:-7346469 None:intergenic
GCTTCATTAGAATTATACCA+AGG 0.697694 7.4:-7349473 None:intergenic
TAGTGACCATCCATGGACGT+TGG 0.702416 7.4:-7348847 None:intergenic
TAGACTGTATTAGGCCTGAG+GGG 0.723441 7.4:-7348295 None:intergenic
GGAGATATCACTATTCAGGG+AGG 0.752640 7.4:+7350105 MS.gene24727:CDS
TCACAGCATACAATGCAAGG+TGG 0.758498 7.4:+7348918 MS.gene24727:CDS
GATTTACAGAAGGTTAACAG+GGG 0.767404 7.4:+7349416 MS.gene24727:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTTAAAAAAAATTT+TGG + chr7.4:7349231-7349250 MS.gene24727:intron 0.0%
!!! AATATTTTAAAAAAAATTTT+GGG + chr7.4:7349232-7349251 MS.gene24727:intron 0.0%
!! AATAAAAAAGAATAATTACT+AGG - chr7.4:7349817-7349836 None:intergenic 10.0%
!! GCAAAAAAAAATTAAATTAT+GGG + chr7.4:7349034-7349053 MS.gene24727:intron 10.0%
!! TGCAAAAAAAAATTAAATTA+TGG + chr7.4:7349033-7349052 MS.gene24727:intron 10.0%
!! TTCATTTAAAAAAAAAAACA+AGG + chr7.4:7347208-7347227 MS.gene24727:intron 10.0%
!!! GTAATTTTTTTTATTTAGTT+TGG - chr7.4:7347043-7347062 None:intergenic 10.0%
!! AAAAATTAGAAATTACACTT+TGG + chr7.4:7349093-7349112 MS.gene24727:intron 15.0%
!! AAATGAAAATAATAATAGTG+TGG - chr7.4:7348429-7348448 None:intergenic 15.0%
!! AGTAAAAATTAAGAAAGTTT+AGG - chr7.4:7349967-7349986 None:intergenic 15.0%
!! ATAAAATAACGAATGTATAT+GGG - chr7.4:7347587-7347606 None:intergenic 15.0%
!! TATAAAATAACGAATGTATA+TGG - chr7.4:7347588-7347607 None:intergenic 15.0%
!! TGTTTATTTATTTGTCATAT+AGG + chr7.4:7349748-7349767 MS.gene24727:intron 15.0%
!! TTATGTTACAATATTGAAAA+AGG - chr7.4:7347438-7347457 None:intergenic 15.0%
!! TTTATTTATTTATTACCTTG+TGG - chr7.4:7349929-7349948 None:intergenic 15.0%
!!! AGATTTTGTACAAAATTTAT+GGG + chr7.4:7348790-7348809 MS.gene24727:CDS 15.0%
!!! ATATTTAAGACACTAAATAA+TGG - chr7.4:7349217-7349236 None:intergenic 15.0%
!!! CAATTTTTTTTTCTTTTATC+TGG - chr7.4:7347011-7347030 None:intergenic 15.0%
!!! CATAATATATATACTCTTTT+TGG - chr7.4:7347645-7347664 None:intergenic 15.0%
!!! CTTTATTTTTCATTCAATTT+AGG - chr7.4:7347472-7347491 None:intergenic 15.0%
!!! TGATTTTAAATAATTGTATG+TGG + chr7.4:7350051-7350070 MS.gene24727:intron 15.0%
!!! TTTACATATTGTTTTCAATT+TGG - chr7.4:7346737-7346756 None:intergenic 15.0%
!! AAAAAAATTACACAAGTCAT+TGG + chr7.4:7349063-7349082 MS.gene24727:intron 20.0%
!! AGTATATATATTATGCTCTA+GGG + chr7.4:7347650-7347669 MS.gene24727:intron 20.0%
!! ATTTACACTAACTAAGAATA+AGG + chr7.4:7347152-7347171 MS.gene24727:intron 20.0%
!! CTCTTAAAATTTCATTTACA+TGG + chr7.4:7346611-7346630 MS.gene24727:intron 20.0%
!! GAAATTACTTGCTTATAATT+TGG - chr7.4:7347738-7347757 None:intergenic 20.0%
!! GTGATATATTATATTTGGAA+AGG + chr7.4:7346969-7346988 MS.gene24727:intron 20.0%
!!! AATGTGATATATACTTTTTC+CGG + chr7.4:7347527-7347546 MS.gene24727:intron 20.0%
!!! ACTTGTGTAATTTTTTTTTC+GGG - chr7.4:7349060-7349079 None:intergenic 20.0%
!!! ATTTAAAACAATGAATACCA+TGG - chr7.4:7346561-7346580 None:intergenic 20.0%
!!! ATTTTTCATTCAATTTAGGA+GGG - chr7.4:7347468-7347487 None:intergenic 20.0%
!!! CAGATTTTGTACAAAATTTA+TGG + chr7.4:7348789-7348808 MS.gene24727:CDS 20.0%
!!! CTTTTTTATTTTCTTAGACA+CGG + chr7.4:7349827-7349846 MS.gene24727:intron 20.0%
!!! GACTTGTGTAATTTTTTTTT+CGG - chr7.4:7349061-7349080 None:intergenic 20.0%
!!! TATTTTTCATTCAATTTAGG+AGG - chr7.4:7347469-7347488 None:intergenic 20.0%
!!! TGTTTTCAATTTGGTAATTT+TGG - chr7.4:7346728-7346747 None:intergenic 20.0%
!!! TTATTTTCATTTGAGAAAAG+TGG + chr7.4:7348437-7348456 MS.gene24727:intron 20.0%
!!! TTTTTACTTAACATTACCAA+AGG + chr7.4:7349979-7349998 MS.gene24727:intron 20.0%
!!! TTTTTTATTTTCTTAGACAC+GGG + chr7.4:7349828-7349847 MS.gene24727:intron 20.0%
! AATTAGAAATTACACTTTGG+TGG + chr7.4:7349096-7349115 MS.gene24727:intron 25.0%
! ACACATCAAAAGAATAGTAT+AGG - chr7.4:7349319-7349338 None:intergenic 25.0%
! ACCAGGTGATATATTATATT+TGG + chr7.4:7346964-7346983 MS.gene24727:intron 25.0%
! ATCAAGTTATATGTTTGCAT+TGG + chr7.4:7347293-7347312 MS.gene24727:intron 25.0%
! ATCCCTTATAAAACTAAAAC+GGG - chr7.4:7349014-7349033 None:intergenic 25.0%
! ATTAGAAATTACACTTTGGT+GGG + chr7.4:7349097-7349116 MS.gene24727:intron 25.0%
! ATTTATATTGTGAAGAATCC+GGG - chr7.4:7349385-7349404 None:intergenic 25.0%
! CAATTGTTTATAAATGTGAC+CGG - chr7.4:7347549-7347568 None:intergenic 25.0%
! CATCCCTTATAAAACTAAAA+CGG - chr7.4:7349015-7349034 None:intergenic 25.0%
! CATTTATATTGTGAAGAATC+CGG - chr7.4:7349386-7349405 None:intergenic 25.0%
! CTATCAATTCTTTCATCATA+AGG - chr7.4:7347892-7347911 None:intergenic 25.0%
! CTTATGATGAAAGAATTGAT+AGG + chr7.4:7347890-7347909 MS.gene24727:intron 25.0%
! GAGTATATATATTATGCTCT+AGG + chr7.4:7347649-7347668 MS.gene24727:intron 25.0%
! TATTTAGATTCAATGCATTC+AGG - chr7.4:7348614-7348633 None:intergenic 25.0%
! TCCAAATATAATATATCACC+TGG - chr7.4:7346968-7346987 None:intergenic 25.0%
! TTAATTGTATCATAATGACC+AGG + chr7.4:7346947-7346966 MS.gene24727:intron 25.0%
! TTATCGTTACTCATACTTAT+AGG + chr7.4:7347913-7347932 MS.gene24727:intron 25.0%
! TTCTCCTTCAAAAAAGAATA+AGG + chr7.4:7347180-7347199 MS.gene24727:intron 25.0%
! TTTCATCATAAGGATTAAAG+AGG - chr7.4:7347882-7347901 None:intergenic 25.0%
!! AACAAGGTTGAATTTTCAAT+AGG + chr7.4:7347224-7347243 MS.gene24727:intron 25.0%
!! ACAAGGTTGAATTTTCAATA+GGG + chr7.4:7347225-7347244 MS.gene24727:intron 25.0%
!! AGTAATTTCTTCAATTTGCT+TGG + chr7.4:7347749-7347768 MS.gene24727:intron 25.0%
!! GCTTATAATTTGGTAATTCT+GGG - chr7.4:7347728-7347747 None:intergenic 25.0%
!! TGCTTATAATTTGGTAATTC+TGG - chr7.4:7347729-7347748 None:intergenic 25.0%
!!! AGTAACTGAGTTTTGTTTAA+CGG + chr7.4:7346788-7346807 MS.gene24727:intron 25.0%
!!! TCAACCTTATTCTTTTTTGA+AGG - chr7.4:7347187-7347206 None:intergenic 25.0%
!!! TTTTAAAGAAATACCTGTTG+TGG - chr7.4:7346497-7346516 None:intergenic 25.0%
!!! TTTTAGAAATCGAATCAAAC+TGG + chr7.4:7349646-7349665 MS.gene24727:intron 25.0%
AAAATTACACAAGTCATTGG+TGG + chr7.4:7349066-7349085 MS.gene24727:intron 30.0%
AAAGATAAAGGTGACAATTG+TGG + chr7.4:7349856-7349875 MS.gene24727:CDS 30.0%
AAATAGTGACATTGATGCAT+TGG - chr7.4:7347408-7347427 None:intergenic 30.0%
AAATTACACAAGTCATTGGT+GGG + chr7.4:7349067-7349086 MS.gene24727:intron 30.0%
AAGACAAGATGAGAATAACT+TGG + chr7.4:7348134-7348153 MS.gene24727:CDS 30.0%
AAGTTATTCTCATCTTGTCT+TGG - chr7.4:7348135-7348154 None:intergenic 30.0%
AATGCATCAATGTCACTATT+TGG + chr7.4:7347407-7347426 MS.gene24727:intron 30.0%
AATTCTAATGAAGCTCATCA+GGG + chr7.4:7349482-7349501 MS.gene24727:CDS 30.0%
ACAATATAAATGGCTTCAAG+GGG + chr7.4:7349394-7349413 MS.gene24727:CDS 30.0%
ACACGGGTTTATAAAGATAA+AGG + chr7.4:7349844-7349863 MS.gene24727:CDS 30.0%
ATCAAAAGAATAGTATAGGC+AGG - chr7.4:7349315-7349334 None:intergenic 30.0%
CACAATATAAATGGCTTCAA+GGG + chr7.4:7349393-7349412 MS.gene24727:CDS 30.0%
CGGATTCTTCACAATATAAA+TGG + chr7.4:7349384-7349403 MS.gene24727:CDS 30.0%
GAAAACAATATGTAAACCGT+TGG + chr7.4:7346741-7346760 MS.gene24727:intron 30.0%
GAAATTCACAATGTCGTAAT+TGG + chr7.4:7348271-7348290 MS.gene24727:CDS 30.0%
GCTTCATTAGAATTATACCA+AGG - chr7.4:7349476-7349495 None:intergenic 30.0%
GGTACTGTACATATATTGTT+GGG + chr7.4:7346665-7346684 MS.gene24727:intron 30.0%
GTACTGTACATATATTGTTG+GGG + chr7.4:7346666-7346685 MS.gene24727:intron 30.0%
TAATTCTAATGAAGCTCATC+AGG + chr7.4:7349481-7349500 MS.gene24727:CDS 30.0%
TACGATATGCTATTATTACC+AGG + chr7.4:7348752-7348771 MS.gene24727:CDS 30.0%
TAGGTACATATATCTCAAGT+GGG + chr7.4:7348109-7348128 MS.gene24727:intron 30.0%
TATAACTTGATTTCCTTCAC+AGG - chr7.4:7347284-7347303 None:intergenic 30.0%
TCAAAAGAATAGTATAGGCA+GGG - chr7.4:7349314-7349333 None:intergenic 30.0%
TCACAATATAAATGGCTTCA+AGG + chr7.4:7349392-7349411 MS.gene24727:CDS 30.0%
TCCCTTATAAAACTAAAACG+GGG - chr7.4:7349013-7349032 None:intergenic 30.0%
TGAATTGTTCGATCAATATG+TGG + chr7.4:7348544-7348563 MS.gene24727:intron 30.0%
TGGTACTGTACATATATTGT+TGG + chr7.4:7346664-7346683 MS.gene24727:intron 30.0%
TTATTTATTACCTTGTGGCT+AGG - chr7.4:7349924-7349943 None:intergenic 30.0%
TTGAGATATATGTACCTACA+AGG - chr7.4:7348107-7348126 None:intergenic 30.0%
TTTATATTGTGAAGAATCCG+GGG - chr7.4:7349384-7349403 None:intergenic 30.0%
! ATTTTGTACAAAATCTGCGT+AGG - chr7.4:7348786-7348805 None:intergenic 30.0%
! CTTCAATTTGCTTGGAATAA+GGG + chr7.4:7347757-7347776 MS.gene24727:intron 30.0%
! GTTTCAACATTGAAGCATTT+AGG + chr7.4:7348719-7348738 MS.gene24727:CDS 30.0%
! TACTATTCTTTTGATGTGTC+TGG + chr7.4:7349320-7349339 MS.gene24727:CDS 30.0%
! TCTTCAATTTGCTTGGAATA+AGG + chr7.4:7347756-7347775 MS.gene24727:intron 30.0%
! TTGGCATAAGAATGATAATG+AGG + chr7.4:7350183-7350202 MS.gene24727:CDS 30.0%
!! AATTTGGTAATTCTGGGATT+AGG - chr7.4:7347722-7347741 None:intergenic 30.0%
!! TTCTTGATTTTGGTATGCTT+AGG + chr7.4:7346392-7346411 MS.gene24727:CDS 30.0%
!!! GTAACTGAGTTTTGTTTAAC+GGG + chr7.4:7346789-7346808 MS.gene24727:intron 30.0%
AACTTGATAGGAAATTGAGC+TGG - chr7.4:7348370-7348389 None:intergenic 35.0%
AGAAATCGAATCAAACTGGT+CGG + chr7.4:7349650-7349669 MS.gene24727:intron 35.0%
CAAAATTTATGGGACTCCTT+TGG + chr7.4:7348800-7348819 MS.gene24727:CDS 35.0%
CAGATTCTAACCTATACTCA+GGG + chr7.4:7348966-7348985 MS.gene24727:intron 35.0%
CTGGAATCTTCTCAATATCA+TGG - chr7.4:7348880-7348899 None:intergenic 35.0%
GATAACTGAATCAGACTCAA+GGG - chr7.4:7347797-7347816 None:intergenic 35.0%
GATTTACAGAAGGTTAACAG+GGG + chr7.4:7349416-7349435 MS.gene24727:CDS 35.0%
GCTCAATTTCCTATCAAGTT+TGG + chr7.4:7348370-7348389 MS.gene24727:CDS 35.0%
GGATTTACAGAAGGTTAACA+GGG + chr7.4:7349415-7349434 MS.gene24727:CDS 35.0%
GTAGGTACATATATCTCAAG+TGG + chr7.4:7348108-7348127 MS.gene24727:intron 35.0%
TAAACAATTCTGCGCAACTA+AGG - chr7.4:7348646-7348665 None:intergenic 35.0%
TATGTGCACCGTGATTTAAT+CGG - chr7.4:7349789-7349808 None:intergenic 35.0%
TCAGATTCTAACCTATACTC+AGG + chr7.4:7348965-7348984 MS.gene24727:intron 35.0%
TCTGATCCACTTTCTTCAAA+TGG - chr7.4:7348950-7348969 None:intergenic 35.0%
TGCCTATACTTAAAATGTGC+AGG + chr7.4:7348671-7348690 MS.gene24727:intron 35.0%
TGGATCAAGAACAAAGAATG+TGG - chr7.4:7348575-7348594 None:intergenic 35.0%
TGGTCGATTGTAGCAATAAA+CGG - chr7.4:7346426-7346445 None:intergenic 35.0%
TGGTTGAACCGATTAAATCA+CGG + chr7.4:7349778-7349797 MS.gene24727:intron 35.0%
TGTACATATATTGTTGGGGT+CGG + chr7.4:7346670-7346689 MS.gene24727:intron 35.0%
TGTTGACATGAAGAATGCAA+TGG + chr7.4:7349517-7349536 MS.gene24727:CDS 35.0%
TTAAAATGTGCAGGAGATCT+TGG + chr7.4:7348680-7348699 MS.gene24727:intron 35.0%
TTAATCGTATGTATGTGTGC+TGG + chr7.4:7346588-7346607 MS.gene24727:intron 35.0%
TTCAGTTATCGTAGTGTCTT+TGG + chr7.4:7347807-7347826 MS.gene24727:intron 35.0%
! AAGAGCATAATGGTAAGAAG+TGG - chr7.4:7348239-7348258 None:intergenic 35.0%
! AATACTTACAAAGCGTTCGT+AGG - chr7.4:7349597-7349616 None:intergenic 35.0%
! AATTTTGGGCCCCAAAAAAT+TGG + chr7.4:7349246-7349265 MS.gene24727:intron 35.0%
! CAAATGCCATTTGAAGAAAG+TGG + chr7.4:7348941-7348960 MS.gene24727:intron 35.0%
! CAGGTAATCACACTATTTTG+TGG - chr7.4:7348595-7348614 None:intergenic 35.0%
! TGATTTAATCGGTTCAACCA+CGG - chr7.4:7349778-7349797 None:intergenic 35.0%
!! ACAAAAATGGTTTTACGAGG+CGG - chr7.4:7346449-7346468 None:intergenic 35.0%
!! CTCCTGCACATTTTAAGTAT+AGG - chr7.4:7348676-7348695 None:intergenic 35.0%
!! GGCCTATGAATTTGTTAAGA+CGG - chr7.4:7348992-7349011 None:intergenic 35.0%
!!! AGTGTCTTTGGTTGGTTTTA+AGG + chr7.4:7347819-7347838 MS.gene24727:intron 35.0%
!!! GCCCCGTTTTAGTTTTATAA+GGG + chr7.4:7349009-7349028 MS.gene24727:intron 35.0%
!!! GCGTTGATGTTGTTTTTACA+GGG + chr7.4:7349561-7349580 MS.gene24727:CDS 35.0%
!!! GTGTCTTTGGTTGGTTTTAA+GGG + chr7.4:7347820-7347839 MS.gene24727:intron 35.0%
AAAATCAAGAAAGCCAAGCC+TGG - chr7.4:7346383-7346402 None:intergenic 40.0%
AAACCGTTGGCAGTTAAGAA+TGG + chr7.4:7346754-7346773 MS.gene24727:intron 40.0%
AACAAGTGTGTTGTGCTCTT+AGG + chr7.4:7347255-7347274 MS.gene24727:intron 40.0%
AACCGTTGGCAGTTAAGAAT+GGG + chr7.4:7346755-7346774 MS.gene24727:intron 40.0%
AAGATCGTGAGGGACAAAAA+TGG - chr7.4:7346462-7346481 None:intergenic 40.0%
AATAGTGATATCTCCGGCTT+AGG - chr7.4:7350100-7350119 None:intergenic 40.0%
AATGTACTGTTGCTGGAGTT+GGG - chr7.4:7348171-7348190 None:intergenic 40.0%
ACAGTCTACTACTACCGTTT+GGG + chr7.4:7348310-7348329 MS.gene24727:CDS 40.0%
ACTCCAGCAACAGTACATTA+CGG + chr7.4:7348172-7348191 MS.gene24727:CDS 40.0%
ACTTAACATTACCAAAGGCG+AGG + chr7.4:7349984-7350003 MS.gene24727:intron 40.0%
AGCATAATGGTAAGAAGTGG+TGG - chr7.4:7348236-7348255 None:intergenic 40.0%
ATCTATTAAGCGTGCTTCTG+TGG - chr7.4:7349164-7349183 None:intergenic 40.0%
ATGAGTCATCAAGATCGTGA+GGG - chr7.4:7346472-7346491 None:intergenic 40.0%
CAAACAGAGTCACTAACAAC+AGG - chr7.4:7350211-7350230 None:intergenic 40.0%
CACGACAAAAAACTGTTCCA+TGG + chr7.4:7346541-7346560 MS.gene24727:intron 40.0%
CATTATGCTCTTTACGAGTC+TGG + chr7.4:7348247-7348266 MS.gene24727:CDS 40.0%
CATTCACAGCATACAATGCA+AGG + chr7.4:7348915-7348934 MS.gene24727:CDS 40.0%
CCAACTACTCCAAACTTGAT+AGG - chr7.4:7348382-7348401 None:intergenic 40.0%
CGATAACTGAATCAGACTCA+AGG - chr7.4:7347798-7347817 None:intergenic 40.0%
CGGTAGTAGTAGACTGTATT+AGG - chr7.4:7348307-7348326 None:intergenic 40.0%
CTGTTGTTAGTGACTCTGTT+TGG + chr7.4:7350209-7350228 MS.gene24727:CDS 40.0%
CTTGCATTGTATGCTGTGAA+TGG - chr7.4:7348917-7348936 None:intergenic 40.0%
GACATGAAGAATGCAATGGA+AGG + chr7.4:7349521-7349540 MS.gene24727:CDS 40.0%
GGAAGACAATCGAAGAACAA+AGG - chr7.4:7347861-7347880 None:intergenic 40.0%
GGCCGTCTTAACAAATTCAT+AGG + chr7.4:7348987-7349006 MS.gene24727:intron 40.0%
GGCGTTCATGTTATCATGTT+GGG + chr7.4:7349341-7349360 MS.gene24727:CDS 40.0%
GGGATTTACAGAAGGTTAAC+AGG + chr7.4:7349414-7349433 MS.gene24727:CDS 40.0%
GTCCAGTGCATATTACCATT+GGG + chr7.4:7349878-7349897 MS.gene24727:CDS 40.0%
GTTATCGTAGTGTCTTTGGT+TGG + chr7.4:7347811-7347830 MS.gene24727:intron 40.0%
TAACAGGGGAAAAACTCCTT+GGG + chr7.4:7349430-7349449 MS.gene24727:CDS 40.0%
TAATGTACTGTTGCTGGAGT+TGG - chr7.4:7348172-7348191 None:intergenic 40.0%
TACAGTCTACTACTACCGTT+TGG + chr7.4:7348309-7348328 MS.gene24727:CDS 40.0%
TACTATATACACCTCGCCTT+TGG - chr7.4:7349998-7350017 None:intergenic 40.0%
TACTTATAGGCAGACAAACC+AGG + chr7.4:7347926-7347945 MS.gene24727:intron 40.0%
TCCAGTGCATATTACCATTG+GGG + chr7.4:7349879-7349898 MS.gene24727:CDS 40.0%
TCCCTGAATAGTGATATCTC+CGG - chr7.4:7350106-7350125 None:intergenic 40.0%
TGGCGTTCATGTTATCATGT+TGG + chr7.4:7349340-7349359 MS.gene24727:CDS 40.0%
TGTATGTGGTGTGTGATGAT+AGG + chr7.4:7350065-7350084 MS.gene24727:intron 40.0%
TTAACAGGGGAAAAACTCCT+TGG + chr7.4:7349429-7349448 MS.gene24727:CDS 40.0%
TTAACGCATCACATGCACTT+TGG + chr7.4:7350158-7350177 MS.gene24727:CDS 40.0%
TTCCCATTCTTAACTGCCAA+CGG - chr7.4:7346760-7346779 None:intergenic 40.0%
TTTGTCATATAGGTCAACCG+TGG + chr7.4:7349758-7349777 MS.gene24727:intron 40.0%
! AAGAGCACAACACACTTGTT+AGG - chr7.4:7347255-7347274 None:intergenic 40.0%
! CAGACTCGTAAAGAGCATAA+TGG - chr7.4:7348249-7348268 None:intergenic 40.0%
! CCTATCAAGTTTGGAGTAGT+TGG + chr7.4:7348379-7348398 MS.gene24727:CDS 40.0%
! GAAGAACAAAGGTGTGTAAG+AGG - chr7.4:7347850-7347869 None:intergenic 40.0%
! TAAGATTGTGTGAGCCTTGT+AGG + chr7.4:7348090-7348109 MS.gene24727:intron 40.0%
! TTGAAGGGAACACATTTTCC+AGG + chr7.4:7346362-7346381 MS.gene24727:CDS 40.0%
! TTTTTGCTGAGTCACCCAAA+CGG - chr7.4:7348327-7348346 None:intergenic 40.0%
!! AGGCTTGGCTTTCTTGATTT+TGG + chr7.4:7346382-7346401 MS.gene24727:CDS 40.0%
!! GGGACAAAAATGGTTTTACG+AGG - chr7.4:7346452-7346471 None:intergenic 40.0%
!!! AGTTTTGTTTAACGGGATGC+TGG + chr7.4:7346796-7346815 MS.gene24727:intron 40.0%
!!! CGCGTTGATGTTGTTTTTAC+AGG + chr7.4:7349560-7349579 MS.gene24727:CDS 40.0%
!!! GGCCCCGTTTTAGTTTTATA+AGG + chr7.4:7349008-7349027 MS.gene24727:intron 40.0%
!!! TTCTTATACCGATTTTGCCC+CGG + chr7.4:7349364-7349383 MS.gene24727:CDS 40.0%
AACTAGACTACGGAGTAACC+AGG - chr7.4:7349696-7349715 None:intergenic 45.0%
AACTGGTCGGATCAATCAGT+TGG + chr7.4:7349663-7349682 MS.gene24727:intron 45.0%
AAGAATAGTATAGGCAGGGC+CGG - chr7.4:7349310-7349329 None:intergenic 45.0%
AATGGCTCTTTGTGGACAAC+TGG - chr7.4:7348899-7348918 None:intergenic 45.0%
ACTAGACTACGGAGTAACCA+GGG - chr7.4:7349695-7349714 None:intergenic 45.0%
AGCCGGAGATATCACTATTC+AGG + chr7.4:7350101-7350120 MS.gene24727:CDS 45.0%
AGGTGGAGAAGACAACAACA+TGG + chr7.4:7346698-7346717 MS.gene24727:intron 45.0%
AGTAGACTGTATTAGGCCTG+AGG - chr7.4:7348300-7348319 None:intergenic 45.0%
ATATCTCCGGCTTAGGATCT+TGG - chr7.4:7350093-7350112 None:intergenic 45.0%
ATGCTGTGAATGGCTCTTTG+TGG - chr7.4:7348907-7348926 None:intergenic 45.0%
CAATCAGTTGGATTTGACCC+TGG + chr7.4:7349675-7349694 MS.gene24727:intron 45.0%
CATATTACCATTGGGGATGG+AGG + chr7.4:7349886-7349905 MS.gene24727:CDS 45.0%
CCAGCACTTCAACTAGACTA+CGG - chr7.4:7349706-7349725 None:intergenic 45.0%
GAGATCTTGGACAAACAGAG+TGG + chr7.4:7348693-7348712 MS.gene24727:CDS 45.0%
GATGAGTCATCAAGATCGTG+AGG - chr7.4:7346473-7346492 None:intergenic 45.0%
GCCGGAGATATCACTATTCA+GGG + chr7.4:7350102-7350121 MS.gene24727:CDS 45.0%
GCTTCAAGGGGATTTACAGA+AGG + chr7.4:7349406-7349425 MS.gene24727:CDS 45.0%
GGAGATATCACTATTCAGGG+AGG + chr7.4:7350105-7350124 MS.gene24727:CDS 45.0%
GGCAGTTAAGAATGGGAAGT+GGG + chr7.4:7346762-7346781 MS.gene24727:intron 45.0%
GGTCCAGTGCATATTACCAT+TGG + chr7.4:7349877-7349896 MS.gene24727:CDS 45.0%
GTAGACTGTATTAGGCCTGA+GGG - chr7.4:7348299-7348318 None:intergenic 45.0%
GTGCATATTACCATTGGGGA+TGG + chr7.4:7349883-7349902 MS.gene24727:CDS 45.0%
TAATGAAGCTCATCAGGGTG+AGG + chr7.4:7349487-7349506 MS.gene24727:CDS 45.0%
TAGACTGTATTAGGCCTGAG+GGG - chr7.4:7348298-7348317 None:intergenic 45.0%
TAGGTACCAAGATCCTAAGC+CGG + chr7.4:7350084-7350103 MS.gene24727:intron 45.0%
TATTGTTGGGGTCGGTGAAT+AGG + chr7.4:7346678-7346697 MS.gene24727:intron 45.0%
TCACAGCATACAATGCAAGG+TGG + chr7.4:7348918-7348937 MS.gene24727:CDS 45.0%
TCCCCAATGGTAATATGCAC+TGG - chr7.4:7349883-7349902 None:intergenic 45.0%
TGAAGAATCCGGGGCAAAAT+CGG - chr7.4:7349375-7349394 None:intergenic 45.0%
TGGCAGTTAAGAATGGGAAG+TGG + chr7.4:7346761-7346780 MS.gene24727:intron 45.0%
TGGTTCAACCAAACGACCAA+AGG - chr7.4:7348819-7348838 None:intergenic 45.0%
TTTCCTGTAGTGACCATCCA+TGG - chr7.4:7348857-7348876 None:intergenic 45.0%
TTTGGGCCCCAAAAAATTGG+AGG + chr7.4:7349249-7349268 MS.gene24727:intron 45.0%
! CTTTGGACATGGAGTACTAG+AGG + chr7.4:7350132-7350151 MS.gene24727:CDS 45.0%
! GGTAGCTTTTGGTGAATGAG+AGG - chr7.4:7349137-7349156 None:intergenic 45.0%
! TCACATGCGTTGATGTTACG+TGG + chr7.4:7346644-7346663 MS.gene24727:intron 45.0%
!! AAAATGGTTTTACGAGGCGG+TGG - chr7.4:7346446-7346465 None:intergenic 45.0%
!! CATCACATGCACTTTGGAGT+TGG + chr7.4:7350164-7350183 MS.gene24727:CDS 45.0%
ATGGGACTCCTTTGGTCGTT+TGG + chr7.4:7348808-7348827 MS.gene24727:CDS 50.0%
ATGTCGTAATTGGTCCCCTC+AGG + chr7.4:7348281-7348300 MS.gene24727:CDS 50.0%
CATATGCAAGCCAACGTCCA+TGG + chr7.4:7348837-7348856 MS.gene24727:CDS 50.0%
CCGTAGTCTAGTTGAAGTGC+TGG + chr7.4:7349703-7349722 MS.gene24727:intron 50.0%
GCAAACGCACTTTCTGCTAC+TGG + chr7.4:7348208-7348227 MS.gene24727:CDS 50.0%
GGGAAAAACTCCTTGGGTAG+TGG + chr7.4:7349436-7349455 MS.gene24727:CDS 50.0%
GTTAAGACGGCCCTGAGTAT+AGG - chr7.4:7348979-7348998 None:intergenic 50.0%
TAGTGACCATCCATGGACGT+TGG - chr7.4:7348850-7348869 None:intergenic 50.0%
TCGCGAAGTAGTCAACTACC+TGG - chr7.4:7347947-7347966 None:intergenic 50.0%
TCTGCGTAGGATAAGTCTCC+TGG - chr7.4:7348773-7348792 None:intergenic 50.0%
TGAACCAACACCACTACCCA+AGG - chr7.4:7349449-7349468 None:intergenic 50.0%
TGATGACTCATCGCCACAAC+AGG + chr7.4:7346481-7346500 MS.gene24727:CDS 50.0%
TGCTCTTAGGACACCTGTGA+AGG + chr7.4:7347268-7347287 MS.gene24727:intron 50.0%
! AACTCCTTGGGTAGTGGTGT+TGG + chr7.4:7349442-7349461 MS.gene24727:CDS 50.0%
! AGTGCGTTTGCTGAAGGAGA+TGG - chr7.4:7348199-7348218 None:intergenic 50.0%
! GCAGAAAGTGCGTTTGCTGA+AGG - chr7.4:7348205-7348224 None:intergenic 50.0%
! GGGAACACATTTTCCAGGCT+TGG + chr7.4:7346367-7346386 MS.gene24727:CDS 50.0%
! GTGCGTTTGCTGAAGGAGAT+GGG - chr7.4:7348198-7348217 None:intergenic 50.0%
! TGGACATGGAGTACTAGAGG+TGG + chr7.4:7350135-7350154 MS.gene24727:CDS 50.0%
!! CATGGACGTTGGCTTGCATA+TGG - chr7.4:7348839-7348858 None:intergenic 50.0%
!! CTATTCAGGGAGGCTAGCTT+TGG + chr7.4:7350115-7350134 MS.gene24727:CDS 50.0%
!! TGGTGTTGGTTCATGCTCCT+TGG + chr7.4:7349456-7349475 MS.gene24727:CDS 50.0%
!!! ACCGGGCCTCCAATTTTTTG+GGG - chr7.4:7349258-7349277 None:intergenic 50.0%
!!! CACCGGGCCTCCAATTTTTT+GGG - chr7.4:7349259-7349278 None:intergenic 50.0%
ACGATTGCCTCCATCCCCAA+TGG - chr7.4:7349896-7349915 None:intergenic 55.0%
AGCTTTACAAGCGGGGTCAG+AGG - chr7.4:7350248-7350267 None:intergenic 55.0%
ATCGTGAAGGCCTAGCCACA+AGG + chr7.4:7349911-7349930 MS.gene24727:CDS 55.0%
CGTCCATGGATGGTCACTAC+AGG + chr7.4:7348851-7348870 MS.gene24727:CDS 55.0%
GCCCCAAAAAATTGGAGGCC+CGG + chr7.4:7349254-7349273 MS.gene24727:intron 55.0%
GGGCCGTAATGTACTGTTGC+TGG - chr7.4:7348178-7348197 None:intergenic 55.0%
TACAAGCGGGGTCAGAGGAA+AGG - chr7.4:7350243-7350262 None:intergenic 55.0%
TGCAAGCCAACGTCCATGGA+TGG + chr7.4:7348841-7348860 MS.gene24727:CDS 55.0%
TGTTGGGGTCGGTGAATAGG+TGG + chr7.4:7346681-7346700 MS.gene24727:intron 55.0%
TTAAGCGTGCTTCTGTGGCG+CGG - chr7.4:7349159-7349178 None:intergenic 55.0%
!! AGGGAGGCTAGCTTTGGACA+TGG + chr7.4:7350121-7350140 MS.gene24727:CDS 55.0%
!!! GCACCGGGCCTCCAATTTTT+TGG - chr7.4:7349260-7349279 None:intergenic 55.0%
GGGGATGGAGGCAATCGTGA+AGG + chr7.4:7349898-7349917 MS.gene24727:CDS 60.0%
TAAGCGTGCTTCTGTGGCGC+GGG - chr7.4:7349158-7349177 None:intergenic 60.0%
! TCTGTGGCGCGGGTAGCTTT+TGG - chr7.4:7349148-7349167 None:intergenic 60.0%
AGCCCGTCGAGGCTGGGCTA+CGG - chr7.4:7349282-7349301 None:intergenic 70.0%
GCCCATAGCCCGTCGAGGCT+GGG - chr7.4:7349288-7349307 None:intergenic 70.0%
GTGCCGTAGCCCAGCCTCGA+CGG + chr7.4:7349276-7349295 MS.gene24727:intron 70.0%
TCGAGGCTGGGCTACGGCAC+CGG - chr7.4:7349276-7349295 None:intergenic 70.0%
TGCCGTAGCCCAGCCTCGAC+GGG + chr7.4:7349277-7349296 MS.gene24727:intron 70.0%
!! AGCCCAGCCTCGACGGGCTA+TGG + chr7.4:7349283-7349302 MS.gene24727:intron 70.0%
!! AGCCTCGACGGGCTATGGGC+CGG + chr7.4:7349288-7349307 MS.gene24727:CDS 70.0%
!! GCCCAGCCTCGACGGGCTAT+GGG + chr7.4:7349284-7349303 MS.gene24727:intron 70.0%
CGAGGCTGGGCTACGGCACC+GGG - chr7.4:7349275-7349294 None:intergenic 75.0%
GGCCCATAGCCCGTCGAGGC+TGG - chr7.4:7349289-7349308 None:intergenic 75.0%
! GGCCGGCCCATAGCCCGTCG+AGG - chr7.4:7349293-7349312 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 7346356 7350270 7346356 ID=MS.gene24727
chr7.4 mRNA 7346356 7350270 7346356 ID=MS.gene24727.t1;Parent=MS.gene24727
chr7.4 exon 7346356 7346502 7346356 ID=MS.gene24727.t1.exon1;Parent=MS.gene24727.t1
chr7.4 CDS 7346356 7346502 7346356 ID=cds.MS.gene24727.t1;Parent=MS.gene24727.t1
chr7.4 exon 7348112 7348400 7348112 ID=MS.gene24727.t1.exon2;Parent=MS.gene24727.t1
chr7.4 CDS 7348112 7348400 7348112 ID=cds.MS.gene24727.t1;Parent=MS.gene24727.t1
chr7.4 exon 7348693 7348959 7348693 ID=MS.gene24727.t1.exon3;Parent=MS.gene24727.t1
chr7.4 CDS 7348693 7348959 7348693 ID=cds.MS.gene24727.t1;Parent=MS.gene24727.t1
chr7.4 exon 7349285 7349607 7349285 ID=MS.gene24727.t1.exon4;Parent=MS.gene24727.t1
chr7.4 CDS 7349285 7349607 7349285 ID=cds.MS.gene24727.t1;Parent=MS.gene24727.t1
chr7.4 exon 7349844 7349932 7349844 ID=MS.gene24727.t1.exon5;Parent=MS.gene24727.t1
chr7.4 CDS 7349844 7349932 7349844 ID=cds.MS.gene24727.t1;Parent=MS.gene24727.t1
chr7.4 exon 7350087 7350270 7350087 ID=MS.gene24727.t1.exon6;Parent=MS.gene24727.t1
chr7.4 CDS 7350087 7350270 7350087 ID=cds.MS.gene24727.t1;Parent=MS.gene24727.t1
Gene Sequence

>MS.gene24727

ATGAGATTGAAGGGAACACATTTTCCAGGCTTGGCTTTCTTGATTTTGGTATGCTTAGGATTTGACGCCGTTTATTGCTACAATCGACCACCGCCTCGTAAAACCATTTTTGTCCCTCACGATCTTGATGACTCATCGCCACAACAGGTATTTCTTTAAAATCATTAAATGCTTCAATCATATATCACGACAAAAAACTGTTCCATGGTATTCATTGTTTTAAATTTTCTATTTAATCGTATGTATGTGTGCTGGCTCTTAAAATTTCATTTACATGGTATCATTCATTCACATGCGTTGATGTTACGTGGTACTGTACATATATTGTTGGGGTCGGTGAATAGGTGGAGAAGACAACAACATGGATTACCAAAATTACCAAATTGAAAACAATATGTAAACCGTTGGCAGTTAAGAATGGGAAGTGGGAGAAGTAACTGAGTTTTGTTTAACGGGATGCTGGCTCTATGATTATTTGTTTGTTCTTAAAAACTTTGTTTTCACTTCATGTCTTGTCTATTTGTTTCTCTCTCTTTTTTAATCAACATTAAGAAAGCTTTGCAGAAGTTATTGCTACTATTTATTGACTAATTAATTGTATCATAATGACCAGGTGATATATTATATTTGGAAAGGAAACAATTTTTTTTGACCAGATAAAAGAAAAAAAAATTGTTGTCTTGACCAAACTAAATAAAAAAAATTACTTAGAAAGAAAAACTATTTATTTATTACTTTATATTTTTTTTTACTACAACTTTATATATTTGCACTAACTTTATTAAAAAAAAAACATATTTACACTAACTAAGAATAAGGTTGAATTCTCCTTCAAAAAAGAATAAGGTTGAATTCATTTAAAAAAAAAAACAAGGTTGAATTTTCAATAGGGTTATCCTAACAAGTGTGTTGTGCTCTTAGGACACCTGTGAAGGAAATCAAGTTATATGTTTGCATTGGATTCAACAATATTTTAACTTTTAAAAAAAATCAAATTTATTATTTTTTATCATTTTCTCAATGCAATATTTTTATTTTTATCGTCTTAGCCAATGCATCAATGTCACTATTTGGCATTTCCTTTTTCAATATTGTAACATAAATCGTTTCCCTCCTAAATTGAATGAAAAATAAAGACAGTAGATGAGATCAATCTAATCTAATATTTTACAATGTGATATATACTTTTTCCGGTCACATTTATAAACAATTGATAAGATCAATATAACCCATATACATTCGTTATTTTATAAATTTAAATACGTAAAAGTTGTTTATAAATGTGACCAAAAAGAGTATATATATTATGCTCTAGGGAAATAGTTTTAAAAACAAAAACAAAAAAAGAATATACTAATATGAACCTAATCCCAGAATTACCAAATTATAAGCAAGTAATTTCTTCAATTTGCTTGGAATAAGGGATATCATACACTCTCCCTTGAGTCTGATTCAGTTATCGTAGTGTCTTTGGTTGGTTTTAAGGGATGTCCTCTTACACACCTTTGTTCTTCGATTGTCTTCCTCTTTAATCCTTATGATGAAAGAATTGATAGGTTATCGTTACTCATACTTATAGGCAGACAAACCAGGTAGTTGACTACTTCGCGAGCTATGTCATTTCTCTACATAGAGTGTCTATTACTTAGATCATCTGCGTTGTATTAAATTTTTATGATATGATGCAACTGATATTTATTTTAATTGTCGTGTTCTGTTTCAAAATGCTAATGATAAGATTGTGTGAGCCTTGTAGGTACATATATCTCAAGTGGGCCAAGACAAGATGAGAATAACTTGGATAACTGAAAGCCCAACTCCAGCAACAGTACATTACGGCCCATCTCCTTCAGCAAACGCACTTTCTGCTACTGGAACCACCACTTCTTACCATTATGCTCTTTACGAGTCTGGTGAAATTCACAATGTCGTAATTGGTCCCCTCAGGCCTAATACAGTCTACTACTACCGTTTGGGTGACTCAGCAAAAACATACAATTTTAAGACTACACCAGCTCAATTTCCTATCAAGTTTGGAGTAGTTGGTATGTGCTCTACATCTCATTAAAGCCACACTATTATTATTTTCATTTGAGAAAAGTGGACAATGCATTATAGTAAAAACTAGTTTTACATTGTGTTGAATGAGAATTCAGTATTTGAGTCATGTAAAAACTTTTAAAAGAATTGAATTGTTCGATCAATATGTGGACAATCCACATTCTTTGTTCTTGATCCACAAAATAGTGTGATTACCTGAATGCATTGAATCTAAATATGTTTTTATCCTTAGTTGCGCAGAATTGTTTATCTCATGCCTATACTTAAAATGTGCAGGAGATCTTGGACAAACAGAGTGGACAGTTTCAACATTGAAGCATTTAGGTGACTCAAATTACGATATGCTATTATTACCAGGAGACTTATCCTACGCAGATTTTGTACAAAATTTATGGGACTCCTTTGGTCGTTTGGTTGAACCATATGCAAGCCAACGTCCATGGATGGTCACTACAGGAAACCATGATATTGAGAAGATTCCAGTTGTCCACAAAGAGCCATTCACAGCATACAATGCAAGGTGGCAAATGCCATTTGAAGAAAGTGGATCAGATTCTAACCTATACTCAGGGCCGTCTTAACAAATTCATAGGCCCCGTTTTAGTTTTATAAGGGATGCAAAAAAAAATTAAATTATGGGCCCGAAAAAAAAATTACACAAGTCATTGGTGGGAAAAAAAATTAGAAATTACACTTTGGTGGGACTTGAACACATGACCTCTCATTCACCAAAAGCTACCCGCGCCACAGAAGCACGCTTAATAGATTGATATTATTTGCTTTTAATACATATATAACCATTATTTAGTGTCTTAAATATTTTAAAAAAAATTTTGGGCCCCAAAAAATTGGAGGCCCGGTGCCGTAGCCCAGCCTCGACGGGCTATGGGCCGGCCCTGCCTATACTATTCTTTTGATGTGTCTGGCGTTCATGTTATCATGTTGGGTTCTTATACCGATTTTGCCCCGGATTCTTCACAATATAAATGGCTTCAAGGGGATTTACAGAAGGTTAACAGGGGAAAAACTCCTTGGGTAGTGGTGTTGGTTCATGCTCCTTGGTATAATTCTAATGAAGCTCATCAGGGTGAGGCTGAATCTGTTGACATGAAGAATGCAATGGAAGGTTTGCTCTATAATGCTCGCGTTGATGTTGTTTTTACAGGGCATGTTCATGCCTACGAACGCTTTGTAAGTATTTTTATTTTATTTTATCATTATGAGTAATGTTTTAGAAATCGAATCAAACTGGTCGGATCAATCAGTTGGATTTGACCCTGGTTACTCCGTAGTCTAGTTGAAGTGCTGGTTCAATCAGTTTTCATTTTATATGTTTATTTATTTGTCATATAGGTCAACCGTGGTTGAACCGATTAAATCACGGTGCACATAACTCACCTAGTAATTATTCTTTTTTATTTTCTTAGACACGGGTTTATAAAGATAAAGGTGACAATTGTGGTCCAGTGCATATTACCATTGGGGATGGAGGCAATCGTGAAGGCCTAGCCACAAGGTAATAAATAAATAAATATTTTGTTTATTTTCCTAAACTTTCTTAATTTTTACTTAACATTACCAAAGGCGAGGTGTATATAGTAGTAATAATTTTGCACTATATATAATATAAGTCATGATTTTAAATAATTGTATGTGGTGTGTGATGATAGGTACCAAGATCCTAAGCCGGAGATATCACTATTCAGGGAGGCTAGCTTTGGACATGGAGTACTAGAGGTGGTTAACGCATCACATGCACTTTGGAGTTGGCATAAGAATGATAATGAGGAACCTGTTGTTAGTGACTCTGTTTGGCTAACAAGCCTTTCCTCTGACCCCGCTTGTAAAGCTTGA
Protein sequence

>MS.gene24727.t1

MRLKGTHFPGLAFLILVCLGFDAVYCYNRPPPRKTIFVPHDLDDSSPQQVHISQVGQDKMRITWITESPTPATVHYGPSPSANALSATGTTTSYHYALYESGEIHNVVIGPLRPNTVYYYRLGDSAKTYNFKTTPAQFPIKFGVVGDLGQTEWTVSTLKHLGDSNYDMLLLPGDLSYADFVQNLWDSFGRLVEPYASQRPWMVTTGNHDIEKIPVVHKEPFTAYNARWQMPFEETQPRRAMGRPCLYYSFDVSGVHVIMLGSYTDFAPDSSQYKWLQGDLQKVNRGKTPWVVVLVHAPWYNSNEAHQGEAESVDMKNAMEGLLYNARVDVVFTGHVHAYERFTRVYKDKGDNCGPVHITIGDGGNREGLATRYQDPKPEISLFREASFGHGVLEVVNASHALWSWHKNDNEEPVVSDSVWLTSLSSDPACKA