AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30248


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 163 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATAGGCTTGTATTATT+TGG 0.172159 4.2:+1351797 MS.gene30248:CDS
TGTGGGAGGGTTATTATATT+TGG 0.207983 4.2:+1352470 MS.gene30248:CDS
GGGCACTCACTCTCAGTTTA+TGG 0.213464 4.2:+1352248 MS.gene30248:CDS
CATCGATTGGTTCTGTTTGC+AGG 0.229475 4.2:+1351555 MS.gene30248:CDS
CTTCATGGACTCCTCCTTCT+AGG 0.236476 4.2:+1352222 MS.gene30248:CDS
CACAATTGAAGGCTCTAAAT+TGG 0.241941 4.2:+1352102 MS.gene30248:CDS
TCTCTTGCTTAAACAGTTCT+TGG 0.261051 4.2:+1351942 MS.gene30248:CDS
ACACTAACCCTTTGCCATTC+TGG 0.266477 4.2:-1351884 None:intergenic
GTGCTTGTGCTGCAGGAAAT+AGG 0.284638 4.2:+1351783 MS.gene30248:CDS
TGGACTCCTCCTTCTAGGTT+AGG 0.286313 4.2:+1352227 MS.gene30248:CDS
CTATGACCCCAAGCAAATTT+AGG 0.308735 4.2:-1352593 None:intergenic
ACCGTCTCAGCTATTTCTAT+TGG 0.311844 4.2:+1352517 MS.gene30248:CDS
TGTTTGCTTCGGAAAAGATT+TGG 0.312883 4.2:-1351334 None:intergenic
CAGCCGGTTCTTGCAATATA+GGG 0.313877 4.2:+1351118 None:intergenic
ATATTTGGAGGTTCCATTGC+AGG 0.333382 4.2:+1352485 MS.gene30248:CDS
GCAGCCGGTTCTTGCAATAT+AGG 0.345908 4.2:+1351117 None:intergenic
ATCCTCCCCGCCCGGCCGAT+GGG 0.346004 4.2:+1351910 MS.gene30248:CDS
AGCTCAGAGGCGGCATCCTT+TGG 0.346721 4.2:+1351148 MS.gene30248:CDS
TGATGTGTTTGTGCTTGATT+TGG 0.349642 4.2:+1352006 MS.gene30248:CDS
GGTTGGAGGGACTAGAGTTT+TGG 0.350009 4.2:+1352625 MS.gene30248:CDS
TGTGGCCCCATCGGCCGGGC+GGG 0.357098 4.2:-1351916 None:intergenic
GAGAGAAAATTCCAACTTCA+TGG 0.366532 4.2:+1352207 MS.gene30248:CDS
CTACTCTTGAGGCTGTTTGC+TGG 0.369379 4.2:+1351711 MS.gene30248:CDS
GTGGAGGATCCTCAATGTTC+CGG 0.370289 4.2:+1352562 MS.gene30248:CDS
ATGCAAGTCTCTCTGAAAAC+TGG 0.371445 4.2:-1351380 None:intergenic
CGCCGCCTCTTCCGAGATCT+TGG 0.372949 4.2:+1352068 MS.gene30248:CDS
ACGGCCCCAACCTAACTTCT+TGG 0.384038 4.2:-1351672 None:intergenic
CACGTCGGTTTCTCTTCGGC+AGG 0.391277 4.2:-1352542 None:intergenic
GGAACCACCTAAATTTGCTT+GGG 0.393741 4.2:+1352586 MS.gene30248:CDS
GAGTGTGTGGCCCCATCGGC+CGG 0.399734 4.2:-1351921 None:intergenic
TGGACATACCGGGGAGGAAT+GGG 0.400686 4.2:+1352655 MS.gene30248:CDS
TTGGTGTTGGGTGGACATAC+CGG 0.402125 4.2:+1352644 MS.gene30248:CDS
TGGAGGATCCTCAATGTTCC+GGG 0.414753 4.2:+1352563 MS.gene30248:CDS
TGGTGTTGGGTGGACATACC+GGG 0.415143 4.2:+1352645 MS.gene30248:CDS
GGAGTCGTGACACACATAAT+AGG 0.418405 4.2:+1351308 MS.gene30248:CDS
TATCCTCCCCGCCCGGCCGA+TGG 0.425086 4.2:+1351909 MS.gene30248:CDS
GAACTGATGACCAAGAAGTT+AGG 0.427716 4.2:+1351662 MS.gene30248:CDS
CACAGCTCATGCACAATTGA+AGG 0.428020 4.2:+1352091 MS.gene30248:CDS
AATTTCAGTGCTTGTGCTGC+AGG 0.430336 4.2:+1351776 MS.gene30248:CDS
AGTGAGTGCCCTAACCTAGA+AGG 0.434298 4.2:-1352236 None:intergenic
TTGCAAAGAGTGGACACTTA+AGG 0.435187 4.2:+1352300 MS.gene30248:CDS
GCTCGTTCTTTGTCAATTGA+CGG 0.436187 4.2:-1351583 None:intergenic
GCTAAATATTCTCCCAAAAG+TGG 0.437183 4.2:+1351422 MS.gene30248:CDS
TCAGCTTTCTGATGAAGTCT+TGG 0.437833 4.2:+1351493 MS.gene30248:CDS
AGGACAAAGATTCTCATGTT+TGG 0.440239 4.2:+1352272 MS.gene30248:CDS
GTTCAAGTCTATGTTTGCTT+CGG 0.440669 4.2:-1351345 None:intergenic
GGGAGGGTTATTATATTTGG+AGG 0.441072 4.2:+1352473 MS.gene30248:CDS
GGACTCCTCCTTCTAGGTTA+GGG 0.442999 4.2:+1352228 MS.gene30248:CDS
ACTCCATCATCATCATGAAT+TGG 0.445762 4.2:-1351290 None:intergenic
GTGGCCCCATCGGCCGGGCG+GGG 0.447496 4.2:-1351915 None:intergenic
TAGGTTGGGGCCGTCTGACT+CGG 0.448906 4.2:+1351681 MS.gene30248:CDS
GGTCATAGCACTTGTGTGGT+TGG 0.452644 4.2:+1352608 MS.gene30248:CDS
TGACAAAGAACGAGCACGTT+AGG 0.454258 4.2:+1351591 MS.gene30248:CDS
AGGCTCTAAATTGGTTGTCT+CGG 0.461684 4.2:+1352111 MS.gene30248:CDS
GGCTCTAAATTGGTTGTCTC+GGG 0.463717 4.2:+1352112 MS.gene30248:CDS
TCCTCCCCGCCCGGCCGATG+GGG 0.463860 4.2:+1351911 MS.gene30248:CDS
CCGAGGGATGTTGCATCGAT+TGG 0.463890 4.2:+1351542 MS.gene30248:CDS
AATAGGCTTGTATTATTTGG+AGG 0.465306 4.2:+1351800 MS.gene30248:CDS
AAGCCTAAGTCTGTTGACTA+AGG 0.465707 4.2:-1351264 None:intergenic
GAACGAGCACGTTAGGAAGA+TGG 0.469272 4.2:+1351598 MS.gene30248:CDS
CTTGTATTATTTGGAGGTGA+AGG 0.470299 4.2:+1351806 MS.gene30248:CDS
GCCCCATCGGCCGGGCGGGG+AGG 0.477243 4.2:-1351912 None:intergenic
GATGACCAAGAAGTTAGGTT+GGG 0.477266 4.2:+1351667 MS.gene30248:CDS
GGGAACCACCTAAATTTGCT+TGG 0.486452 4.2:+1352585 MS.gene30248:CDS
CACATCTCTTCGCGCTGCCG+TGG 0.487345 4.2:-1351461 None:intergenic
CTCCCTTAGTCAACAGACTT+AGG 0.488483 4.2:+1351261 MS.gene30248:CDS
CATAGCACTTGTGTGGTTGG+AGG 0.488750 4.2:+1352611 MS.gene30248:CDS
CCTCCACGTCGGTTTCTCTT+CGG 0.490496 4.2:-1352546 None:intergenic
ATTAGAAGATGTCTTGAAGA+AGG 0.497885 4.2:+1351194 MS.gene30248:CDS
GTGGACATACCGGGGAGGAA+TGG 0.501214 4.2:+1352654 MS.gene30248:CDS
GGATGCCGCCTCTGAGCTCT+AGG 0.505139 4.2:-1351143 None:intergenic
CTTCTGAATTTCAGAAAGGA+TGG 0.505201 4.2:+1351236 MS.gene30248:CDS
TTGCAGTAAGCATGCCTTGT+GGG 0.506427 4.2:+1352453 MS.gene30248:CDS
TGAAATTCAGAAGTTCCCCT+TGG 0.507034 4.2:-1351226 None:intergenic
GATCCCTATATTGCAAGAAC+CGG 0.508385 4.2:-1351121 None:intergenic
TTTGGTGGATGTGGTAGGCA+AGG 0.511551 4.2:+1351974 MS.gene30248:CDS
GAAGGAGGAGTCCATGAAGT+TGG 0.513595 4.2:-1352218 None:intergenic
CAGTAAGCATGCCTTGTGGG+AGG 0.517765 4.2:+1352456 MS.gene30248:CDS
ACAAAGATTCTCATGTTTGG+TGG 0.518883 4.2:+1352275 MS.gene30248:CDS
GGAACTTCTGAATTTCAGAA+AGG 0.531302 4.2:+1351232 MS.gene30248:CDS
CCGACATGGAAGGAAGTCTT+CGG 0.531353 4.2:+1352040 MS.gene30248:CDS
AGATGGTTTGTCAAAACGCA+TGG 0.532902 4.2:+1351615 MS.gene30248:CDS
CATTCTAGTTGCCTCCATTG+TGG 0.534438 4.2:-1352368 None:intergenic
GCAAATTTAGGTGGTTCCCC+CGG 0.536214 4.2:-1352581 None:intergenic
CAAAGAAGTGACAGGTACAT+TGG 0.538138 4.2:+1351640 MS.gene30248:CDS
ATAGCACTTGTGTGGTTGGA+GGG 0.538751 4.2:+1352612 MS.gene30248:CDS
AAGAGAGTGTGTGGCCCCAT+CGG 0.538839 4.2:-1351925 None:intergenic
TCGGGCGGCTGCACAGATGC+CGG 0.544982 4.2:+1352130 MS.gene30248:CDS
AGGTTGGGGCCGTCTGACTC+GGG 0.545100 4.2:+1351682 MS.gene30248:CDS
GGACACTTAAGGTTAAGATC+AGG 0.550094 4.2:+1352311 MS.gene30248:CDS
CGATTGGTTCTGTTTGCAGG+AGG 0.551211 4.2:+1351558 MS.gene30248:CDS
AGGAGTGGATATGCAGCCTA+TGG 0.551520 4.2:+1351826 MS.gene30248:CDS
CTAGAATGTAGTGCATTCAC+AGG 0.551583 4.2:+1352383 MS.gene30248:CDS
AAGAAGGTATTGAGTTCCAA+GGG 0.553691 4.2:+1351210 MS.gene30248:CDS
TGATGACCAAGAAGTTAGGT+TGG 0.554354 4.2:+1351666 MS.gene30248:CDS
TCAGAGGCGGCATCCTTTGG+TGG 0.557577 4.2:+1351151 MS.gene30248:CDS
AAAAGTTACAGTTGGAGGCG+GGG 0.563457 4.2:+1351736 MS.gene30248:CDS
AGTCTCTCTGAAAACTGGAT+AGG 0.564618 4.2:-1351375 None:intergenic
ACGCCAATTCATGATGATGA+TGG 0.567655 4.2:+1351287 MS.gene30248:CDS
CTGTGCCAAGATCTCGGAAG+AGG 0.567792 4.2:-1352073 None:intergenic
CTAAGAATCCAGAATGGCAA+AGG 0.567914 4.2:+1351876 MS.gene30248:CDS
ACGTCGGTTTCTCTTCGGCA+GGG 0.569618 4.2:-1352541 None:intergenic
AGCCTAAGTCTGTTGACTAA+GGG 0.572540 4.2:-1351263 None:intergenic
CTAATCTCAGACACAACGAC+TGG 0.572852 4.2:-1351176 None:intergenic
AGTGTGTGGCCCCATCGGCC+GGG 0.576130 4.2:-1351920 None:intergenic
TGCTCAACAGCCGACATGGA+AGG 0.576956 4.2:+1352030 MS.gene30248:CDS
CCGAAGACTTCCTTCCATGT+CGG 0.579808 4.2:-1352040 None:intergenic
AGAACAAAAGTATCATCCAT+AGG 0.580180 4.2:-1351842 None:intergenic
TCCAATAGAAATAGCTGAGA+CGG 0.580190 4.2:-1352518 None:intergenic
GATGGTTTGTCAAAACGCAT+GGG 0.583838 4.2:+1351616 MS.gene30248:CDS
CCAATCGATGCAACATCCCT+CGG 0.585601 4.2:-1351542 None:intergenic
TGCCAAGATCTCGGAAGAGG+CGG 0.585827 4.2:-1352070 None:intergenic
AGTAAGCATGCCTTGTGGGA+GGG 0.586759 4.2:+1352457 MS.gene30248:CDS
CGGTGAATGAAGACCTGCAA+TGG 0.588794 4.2:-1352498 None:intergenic
GTGTGGCCCCATCGGCCGGG+CGG 0.590319 4.2:-1351917 None:intergenic
CATGAGCTGTGCCAAGATCT+CGG 0.590774 4.2:-1352079 None:intergenic
TAAGAATCCAGAATGGCAAA+GGG 0.592387 4.2:+1351877 MS.gene30248:CDS
GAAAATTATTGTACACTCCA+CGG 0.593713 4.2:+1351444 MS.gene30248:CDS
TGAGTTGCATGAGTTGTGCT+TGG 0.594676 4.2:+1352685 MS.gene30248:CDS
TGGATGCTCAACAGCCGACA+TGG 0.596002 4.2:+1352026 MS.gene30248:CDS
GGTGTTGGGTGGACATACCG+GGG 0.599502 4.2:+1352646 MS.gene30248:CDS
TTTGGTGGACTTGCAAAGAG+TGG 0.599541 4.2:+1352290 MS.gene30248:CDS
ATTCAGCACCCATTCCTCCC+CGG 0.599838 4.2:-1352663 None:intergenic
TAGTAAGCTCCCGAGTCAGA+CGG 0.604022 4.2:-1351691 None:intergenic
ACATGATCTAGTCGAGGAGG+AGG 0.604406 4.2:-1352431 None:intergenic
TCTAAATTGGTTGTCTCGGG+CGG 0.604939 4.2:+1352115 MS.gene30248:CDS
GAAGAAGGTATTGAGTTCCA+AGG 0.605857 4.2:+1351209 MS.gene30248:CDS
ATTATTTGGAGGTGAAGGAG+TGG 0.606129 4.2:+1351811 MS.gene30248:CDS
ATGACCAAGAAGTTAGGTTG+GGG 0.608700 4.2:+1351668 MS.gene30248:CDS
GCATGGGGCAAAGAAGTGAC+AGG 0.615126 4.2:+1351632 MS.gene30248:CDS
TCGGGAGCTTACTACTCTTG+AGG 0.615782 4.2:+1351700 MS.gene30248:CDS
GCACTGAAATTGCAGCGTGA+AGG 0.616623 4.2:-1351764 None:intergenic
CTTAAGGTTAAGATCAGGTG+AGG 0.617307 4.2:+1352316 MS.gene30248:CDS
ACTCACTCTCAGTTTATGGT+AGG 0.619329 4.2:+1352252 MS.gene30248:CDS
GAGTGCCCTAACCTAGAAGG+AGG 0.621134 4.2:-1352233 None:intergenic
TTGGGGTCATAGCACTTGTG+TGG 0.623428 4.2:+1352604 MS.gene30248:CDS
AGTGTGATATCCTCCCCGCC+CGG 0.623636 4.2:+1351902 MS.gene30248:CDS
TGTTTAAGCAAGAGAGTGTG+TGG 0.633821 4.2:-1351934 None:intergenic
TTGATGCTAAGAATCCAGAA+TGG 0.634155 4.2:+1351870 MS.gene30248:CDS
GAACCACCTAAATTTGCTTG+GGG 0.636271 4.2:+1352587 MS.gene30248:CDS
GGAGGATCCTCAATGTTCCG+GGG 0.639537 4.2:+1352564 MS.gene30248:CDS
TGACCCCAAGCAAATTTAGG+TGG 0.642462 4.2:-1352590 None:intergenic
ATTGTCACGCTTGACACCGA+GGG 0.643189 4.2:+1351526 MS.gene30248:CDS
TCACAATAGATAATCCTACA+TGG 0.646440 4.2:+1352185 MS.gene30248:intron
CCGAAGAGAAACCGACGTGG+AGG 0.652010 4.2:+1352546 MS.gene30248:CDS
AAGCTGAACAACCACAATGG+AGG 0.657091 4.2:+1352357 MS.gene30248:CDS
AATATAATAACCCTCCCACA+AGG 0.660973 4.2:-1352467 None:intergenic
CGGCAGCGCGAAGAGATGTG+TGG 0.661003 4.2:+1351464 MS.gene30248:CDS
ACAACGACTGGATCCACCAA+AGG 0.667336 4.2:-1351164 None:intergenic
GAGGATCCTCAATGTTCCGG+GGG 0.669777 4.2:+1352565 MS.gene30248:CDS
ATGGTTTGTCAAAACGCATG+GGG 0.675604 4.2:+1351617 MS.gene30248:CDS
TAGAAGCTGAACAACCACAA+TGG 0.675759 4.2:+1352354 MS.gene30248:CDS
ACTGCAACATGATCTAGTCG+AGG 0.685428 4.2:-1352437 None:intergenic
GCAACATGATCTAGTCGAGG+AGG 0.692964 4.2:-1352434 None:intergenic
GGGATCCTAGAGCTCAGAGG+CGG 0.695636 4.2:+1351138 MS.gene30248:CDS
TGAAAACTGGATAGGAAACA+CGG 0.696786 4.2:-1351367 None:intergenic
GTTGCAGTAAGCATGCCTTG+TGG 0.698959 4.2:+1352452 MS.gene30248:CDS
CTGCCGAAGAGAAACCGACG+TGG 0.709608 4.2:+1352543 MS.gene30248:CDS
TATTGTCACGCTTGACACCG+AGG 0.711160 4.2:+1351525 MS.gene30248:CDS
ATAGGGATCCTAGAGCTCAG+AGG 0.719677 4.2:+1351135 MS.gene30248:CDS
GTTGGGTGGACATACCGGGG+AGG 0.725055 4.2:+1352649 MS.gene30248:CDS
AGAAGGTATTGAGTTCCAAG+GGG 0.731475 4.2:+1351211 MS.gene30248:CDS
ACATTGAGGATCCTCCACGT+CGG 0.754895 4.2:-1352557 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACAATAATTTTCCACTTTT+GGG - chr4.2:1351437-1351456 None:intergenic 20.0%
!! GTACAATAATTTTCCACTTT+TGG - chr4.2:1351438-1351457 None:intergenic 25.0%
AATAGGCTTGTATTATTTGG+AGG + chr4.2:1351800-1351819 MS.gene30248:CDS 30.0%
ATGTAGGATTATCTATTGTG+AGG - chr4.2:1352186-1352205 None:intergenic 30.0%
ATTAGAAGATGTCTTGAAGA+AGG + chr4.2:1351194-1351213 MS.gene30248:CDS 30.0%
GAAAATTATTGTACACTCCA+CGG + chr4.2:1351444-1351463 MS.gene30248:CDS 30.0%
GGAAATAGGCTTGTATTATT+TGG + chr4.2:1351797-1351816 MS.gene30248:CDS 30.0%
TCACAATAGATAATCCTACA+TGG + chr4.2:1352185-1352204 MS.gene30248:intron 30.0%
!! AGAACAAAAGTATCATCCAT+AGG - chr4.2:1351845-1351864 None:intergenic 30.0%
AAAAAAGTTACAGTTGGAGG+CGG + chr4.2:1351734-1351753 MS.gene30248:CDS 35.0%
AATATAATAACCCTCCCACA+AGG - chr4.2:1352470-1352489 None:intergenic 35.0%
ACAAAGATTCTCATGTTTGG+TGG + chr4.2:1352275-1352294 MS.gene30248:CDS 35.0%
ACTCCATCATCATCATGAAT+TGG - chr4.2:1351293-1351312 None:intergenic 35.0%
AGGACAAAGATTCTCATGTT+TGG + chr4.2:1352272-1352291 MS.gene30248:CDS 35.0%
CTTCTGAATTTCAGAAAGGA+TGG + chr4.2:1351236-1351255 MS.gene30248:CDS 35.0%
CTTGTATTATTTGGAGGTGA+AGG + chr4.2:1351806-1351825 MS.gene30248:CDS 35.0%
GAGAGAAAATTCCAACTTCA+TGG + chr4.2:1352207-1352226 MS.gene30248:CDS 35.0%
GCTAAATATTCTCCCAAAAG+TGG + chr4.2:1351422-1351441 MS.gene30248:CDS 35.0%
GGAACTTCTGAATTTCAGAA+AGG + chr4.2:1351232-1351251 MS.gene30248:CDS 35.0%
GTTCAAGTCTATGTTTGCTT+CGG - chr4.2:1351348-1351367 None:intergenic 35.0%
TAAGAATCCAGAATGGCAAA+GGG + chr4.2:1351877-1351896 MS.gene30248:CDS 35.0%
TCCAATAGAAATAGCTGAGA+CGG - chr4.2:1352521-1352540 None:intergenic 35.0%
TCTCTTGCTTAAACAGTTCT+TGG + chr4.2:1351942-1351961 MS.gene30248:CDS 35.0%
TGAAAACTGGATAGGAAACA+CGG - chr4.2:1351370-1351389 None:intergenic 35.0%
TGATGTGTTTGTGCTTGATT+TGG + chr4.2:1352006-1352025 MS.gene30248:CDS 35.0%
TGCTGGAAAAAAGTTACAGT+TGG + chr4.2:1351728-1351747 MS.gene30248:CDS 35.0%
TGGAAAAAAGTTACAGTTGG+AGG + chr4.2:1351731-1351750 MS.gene30248:CDS 35.0%
TGTGGGAGGGTTATTATATT+TGG + chr4.2:1352470-1352489 MS.gene30248:CDS 35.0%
TGTTTGCTTCGGAAAAGATT+TGG - chr4.2:1351337-1351356 None:intergenic 35.0%
TTGATGCTAAGAATCCAGAA+TGG + chr4.2:1351870-1351889 MS.gene30248:CDS 35.0%
! TTGGAATTTTCTCTCCATGT+AGG - chr4.2:1352202-1352221 None:intergenic 35.0%
!! AAGAAGGTATTGAGTTCCAA+GGG + chr4.2:1351210-1351229 MS.gene30248:CDS 35.0%
!! AGTTCTTGGCTAGTTGTTTT+TGG + chr4.2:1351956-1351975 MS.gene30248:CDS 35.0%
!! CACAATTGAAGGCTCTAAAT+TGG + chr4.2:1352102-1352121 MS.gene30248:CDS 35.0%
AAAAAGTTACAGTTGGAGGC+GGG + chr4.2:1351735-1351754 MS.gene30248:CDS 40.0%
ACTCACTCTCAGTTTATGGT+AGG + chr4.2:1352252-1352271 MS.gene30248:CDS 40.0%
ATATTTGGAGGTTCCATTGC+AGG + chr4.2:1352485-1352504 MS.gene30248:CDS 40.0%
ATTATTTGGAGGTGAAGGAG+TGG + chr4.2:1351811-1351830 MS.gene30248:CDS 40.0%
CAAAGAAGTGACAGGTACAT+TGG + chr4.2:1351640-1351659 MS.gene30248:CDS 40.0%
CTAAGAATCCAGAATGGCAA+AGG + chr4.2:1351876-1351895 MS.gene30248:CDS 40.0%
CTAGAATGTAGTGCATTCAC+AGG + chr4.2:1352383-1352402 MS.gene30248:CDS 40.0%
CTATGACCCCAAGCAAATTT+AGG - chr4.2:1352596-1352615 None:intergenic 40.0%
CTTAAGGTTAAGATCAGGTG+AGG + chr4.2:1352316-1352335 MS.gene30248:CDS 40.0%
GAACTGATGACCAAGAAGTT+AGG + chr4.2:1351662-1351681 MS.gene30248:CDS 40.0%
GATCCCTATATTGCAAGAAC+CGG - chr4.2:1351124-1351143 None:intergenic 40.0%
GATGACCAAGAAGTTAGGTT+GGG + chr4.2:1351667-1351686 MS.gene30248:CDS 40.0%
GCTCGTTCTTTGTCAATTGA+CGG - chr4.2:1351586-1351605 None:intergenic 40.0%
GGACACTTAAGGTTAAGATC+AGG + chr4.2:1352311-1352330 MS.gene30248:CDS 40.0%
GGGAGGGTTATTATATTTGG+AGG + chr4.2:1352473-1352492 MS.gene30248:CDS 40.0%
TAGAAGCTGAACAACCACAA+TGG + chr4.2:1352354-1352373 MS.gene30248:CDS 40.0%
TCAGCTTTCTGATGAAGTCT+TGG + chr4.2:1351493-1351512 MS.gene30248:CDS 40.0%
TGAAATTCAGAAGTTCCCCT+TGG - chr4.2:1351229-1351248 None:intergenic 40.0%
TGATGACCAAGAAGTTAGGT+TGG + chr4.2:1351666-1351685 MS.gene30248:CDS 40.0%
TTGCAAAGAGTGGACACTTA+AGG + chr4.2:1352300-1352319 MS.gene30248:CDS 40.0%
! AAGCCTAAGTCTGTTGACTA+AGG - chr4.2:1351267-1351286 None:intergenic 40.0%
! ACGCCAATTCATGATGATGA+TGG + chr4.2:1351287-1351306 MS.gene30248:CDS 40.0%
! AGATGGTTTGTCAAAACGCA+TGG + chr4.2:1351615-1351634 MS.gene30248:CDS 40.0%
! AGCCTAAGTCTGTTGACTAA+GGG - chr4.2:1351266-1351285 None:intergenic 40.0%
! AGTCTCTCTGAAAACTGGAT+AGG - chr4.2:1351378-1351397 None:intergenic 40.0%
! ATGACCAAGAAGTTAGGTTG+GGG + chr4.2:1351668-1351687 MS.gene30248:CDS 40.0%
! ATGCAAGTCTCTCTGAAAAC+TGG - chr4.2:1351383-1351402 None:intergenic 40.0%
! ATGGTTTGTCAAAACGCATG+GGG + chr4.2:1351617-1351636 MS.gene30248:CDS 40.0%
! GAACCACCTAAATTTGCTTG+GGG + chr4.2:1352587-1352606 MS.gene30248:CDS 40.0%
! GATGGTTTGTCAAAACGCAT+GGG + chr4.2:1351616-1351635 MS.gene30248:CDS 40.0%
! GGAACCACCTAAATTTGCTT+GGG + chr4.2:1352586-1352605 MS.gene30248:CDS 40.0%
! TGTTTAAGCAAGAGAGTGTG+TGG - chr4.2:1351937-1351956 None:intergenic 40.0%
!! ACCGTCTCAGCTATTTCTAT+TGG + chr4.2:1352517-1352536 MS.gene30248:CDS 40.0%
!! AGAAGGTATTGAGTTCCAAG+GGG + chr4.2:1351211-1351230 MS.gene30248:CDS 40.0%
!! AGGCTCTAAATTGGTTGTCT+CGG + chr4.2:1352111-1352130 MS.gene30248:CDS 40.0%
!! GAAGAAGGTATTGAGTTCCA+AGG + chr4.2:1351209-1351228 MS.gene30248:CDS 40.0%
!! TGTGTCACTAAGAAGTACTC+CGG - chr4.2:1352152-1352171 None:intergenic 40.0%
!!! CTAGTTGTTTTTGGTGGATG+TGG + chr4.2:1351965-1351984 MS.gene30248:CDS 40.0%
!!! TCTTGGCTAGTTGTTTTTGG+TGG + chr4.2:1351959-1351978 MS.gene30248:CDS 40.0%
!!! TTGTTTTTGGTGGATGTGGT+AGG + chr4.2:1351969-1351988 MS.gene30248:CDS 40.0%
AAAAGTTACAGTTGGAGGCG+GGG + chr4.2:1351736-1351755 MS.gene30248:CDS 45.0%
AAGCTGAACAACCACAATGG+AGG + chr4.2:1352357-1352376 MS.gene30248:CDS 45.0%
AATTTCAGTGCTTGTGCTGC+AGG + chr4.2:1351776-1351795 MS.gene30248:CDS 45.0%
ACACTAACCCTTTGCCATTC+TGG - chr4.2:1351887-1351906 None:intergenic 45.0%
ACTGCAACATGATCTAGTCG+AGG - chr4.2:1352440-1352459 None:intergenic 45.0%
ATAGCACTTGTGTGGTTGGA+GGG + chr4.2:1352612-1352631 MS.gene30248:CDS 45.0%
CACAGCTCATGCACAATTGA+AGG + chr4.2:1352091-1352110 MS.gene30248:CDS 45.0%
CTAATCTCAGACACAACGAC+TGG - chr4.2:1351179-1351198 None:intergenic 45.0%
CTCCCTTAGTCAACAGACTT+AGG + chr4.2:1351261-1351280 MS.gene30248:CDS 45.0%
GGAGTCGTGACACACATAAT+AGG + chr4.2:1351308-1351327 MS.gene30248:CDS 45.0%
TCTAAATTGGTTGTCTCGGG+CGG + chr4.2:1352115-1352134 MS.gene30248:CDS 45.0%
TGACAAAGAACGAGCACGTT+AGG + chr4.2:1351591-1351610 MS.gene30248:CDS 45.0%
TGACCCCAAGCAAATTTAGG+TGG - chr4.2:1352593-1352612 None:intergenic 45.0%
TGAGTTGCATGAGTTGTGCT+TGG + chr4.2:1352685-1352704 MS.gene30248:CDS 45.0%
TTGCAGTAAGCATGCCTTGT+GGG + chr4.2:1352453-1352472 MS.gene30248:CDS 45.0%
! CATTCTAGTTGCCTCCATTG+TGG - chr4.2:1352371-1352390 None:intergenic 45.0%
! GGGAACCACCTAAATTTGCT+TGG + chr4.2:1352585-1352604 MS.gene30248:CDS 45.0%
!! AGGGACTAGAGTTTTGGTGT+TGG + chr4.2:1352631-1352650 MS.gene30248:CDS 45.0%
!! CATCGATTGGTTCTGTTTGC+AGG + chr4.2:1351555-1351574 MS.gene30248:CDS 45.0%
!! GGCTCTAAATTGGTTGTCTC+GGG + chr4.2:1352112-1352131 MS.gene30248:CDS 45.0%
!! TTTGGTGGACTTGCAAAGAG+TGG + chr4.2:1352290-1352309 MS.gene30248:CDS 45.0%
!!! ACTAGAGTTTTGGTGTTGGG+TGG + chr4.2:1352635-1352654 MS.gene30248:CDS 45.0%
!!! GGGACTAGAGTTTTGGTGTT+GGG + chr4.2:1352632-1352651 MS.gene30248:CDS 45.0%
ACAACGACTGGATCCACCAA+AGG - chr4.2:1351167-1351186 None:intergenic 50.0%
ACATGATCTAGTCGAGGAGG+AGG - chr4.2:1352434-1352453 None:intergenic 50.0%
ACATTGAGGATCCTCCACGT+CGG - chr4.2:1352560-1352579 None:intergenic 50.0%
AGGAGTGGATATGCAGCCTA+TGG + chr4.2:1351826-1351845 MS.gene30248:CDS 50.0%
AGTAAGCATGCCTTGTGGGA+GGG + chr4.2:1352457-1352476 MS.gene30248:CDS 50.0%
AGTGAGTGCCCTAACCTAGA+AGG - chr4.2:1352239-1352258 None:intergenic 50.0%
ATAGGGATCCTAGAGCTCAG+AGG + chr4.2:1351135-1351154 MS.gene30248:CDS 50.0%
ATTGTCACGCTTGACACCGA+GGG + chr4.2:1351526-1351545 MS.gene30248:CDS 50.0%
CATAGCACTTGTGTGGTTGG+AGG + chr4.2:1352611-1352630 MS.gene30248:CDS 50.0%
CATGAGCTGTGCCAAGATCT+CGG - chr4.2:1352082-1352101 None:intergenic 50.0%
CCAATCGATGCAACATCCCT+CGG - chr4.2:1351545-1351564 None:intergenic 50.0%
CCGAAGACTTCCTTCCATGT+CGG - chr4.2:1352043-1352062 None:intergenic 50.0%
CCGACATGGAAGGAAGTCTT+CGG + chr4.2:1352040-1352059 MS.gene30248:CDS 50.0%
CGGTGAATGAAGACCTGCAA+TGG - chr4.2:1352501-1352520 None:intergenic 50.0%
CTACTCTTGAGGCTGTTTGC+TGG + chr4.2:1351711-1351730 MS.gene30248:CDS 50.0%
CTTCATGGACTCCTCCTTCT+AGG + chr4.2:1352222-1352241 MS.gene30248:CDS 50.0%
GAACGAGCACGTTAGGAAGA+TGG + chr4.2:1351598-1351617 MS.gene30248:CDS 50.0%
GAAGGAGGAGTCCATGAAGT+TGG - chr4.2:1352221-1352240 None:intergenic 50.0%
GCAAATTTAGGTGGTTCCCC+CGG - chr4.2:1352584-1352603 None:intergenic 50.0%
GCAACATGATCTAGTCGAGG+AGG - chr4.2:1352437-1352456 None:intergenic 50.0%
GCACTGAAATTGCAGCGTGA+AGG - chr4.2:1351767-1351786 None:intergenic 50.0%
GGACTCCTCCTTCTAGGTTA+GGG + chr4.2:1352228-1352247 MS.gene30248:CDS 50.0%
GGGCACTCACTCTCAGTTTA+TGG + chr4.2:1352248-1352267 MS.gene30248:CDS 50.0%
GGTCATAGCACTTGTGTGGT+TGG + chr4.2:1352608-1352627 MS.gene30248:CDS 50.0%
GTGCTTGTGCTGCAGGAAAT+AGG + chr4.2:1351783-1351802 MS.gene30248:CDS 50.0%
GTGGAGGATCCTCAATGTTC+CGG + chr4.2:1352562-1352581 MS.gene30248:CDS 50.0%
GTTGCAGTAAGCATGCCTTG+TGG + chr4.2:1352452-1352471 MS.gene30248:CDS 50.0%
TAGTAAGCTCCCGAGTCAGA+CGG - chr4.2:1351694-1351713 None:intergenic 50.0%
TATTGTCACGCTTGACACCG+AGG + chr4.2:1351525-1351544 MS.gene30248:CDS 50.0%
TCGGGAGCTTACTACTCTTG+AGG + chr4.2:1351700-1351719 MS.gene30248:CDS 50.0%
TGGACTCCTCCTTCTAGGTT+AGG + chr4.2:1352227-1352246 MS.gene30248:CDS 50.0%
TGGAGGATCCTCAATGTTCC+GGG + chr4.2:1352563-1352582 MS.gene30248:CDS 50.0%
TTGGGGTCATAGCACTTGTG+TGG + chr4.2:1352604-1352623 MS.gene30248:CDS 50.0%
! GGTTGGAGGGACTAGAGTTT+TGG + chr4.2:1352625-1352644 MS.gene30248:CDS 50.0%
! TTTGGTGGATGTGGTAGGCA+AGG + chr4.2:1351974-1351993 MS.gene30248:CDS 50.0%
!! CGATTGGTTCTGTTTGCAGG+AGG + chr4.2:1351558-1351577 MS.gene30248:CDS 50.0%
!! TTGGTGTTGGGTGGACATAC+CGG + chr4.2:1352644-1352663 MS.gene30248:CDS 50.0%
ACGGCCCCAACCTAACTTCT+TGG - chr4.2:1351675-1351694 None:intergenic 55.0%
ATTCAGCACCCATTCCTCCC+CGG - chr4.2:1352666-1352685 None:intergenic 55.0%
CAGTAAGCATGCCTTGTGGG+AGG + chr4.2:1352456-1352475 MS.gene30248:CDS 55.0%
CTGTGCCAAGATCTCGGAAG+AGG - chr4.2:1352076-1352095 None:intergenic 55.0%
GAGGATCCTCAATGTTCCGG+GGG + chr4.2:1352565-1352584 MS.gene30248:CDS 55.0%
GAGTGCCCTAACCTAGAAGG+AGG - chr4.2:1352236-1352255 None:intergenic 55.0%
GCATGGGGCAAAGAAGTGAC+AGG + chr4.2:1351632-1351651 MS.gene30248:CDS 55.0%
GGAGGATCCTCAATGTTCCG+GGG + chr4.2:1352564-1352583 MS.gene30248:CDS 55.0%
TGCCAAGATCTCGGAAGAGG+CGG - chr4.2:1352073-1352092 None:intergenic 55.0%
TGCTCAACAGCCGACATGGA+AGG + chr4.2:1352030-1352049 MS.gene30248:CDS 55.0%
TGGACATACCGGGGAGGAAT+GGG + chr4.2:1352655-1352674 MS.gene30248:CDS 55.0%
TGGATGCTCAACAGCCGACA+TGG + chr4.2:1352026-1352045 MS.gene30248:CDS 55.0%
! AAGAGAGTGTGTGGCCCCAT+CGG - chr4.2:1351928-1351947 None:intergenic 55.0%
! CCGAGGGATGTTGCATCGAT+TGG + chr4.2:1351542-1351561 MS.gene30248:CDS 55.0%
! TGGTGTTGGGTGGACATACC+GGG + chr4.2:1352645-1352664 MS.gene30248:CDS 55.0%
!! ACGTCGGTTTCTCTTCGGCA+GGG - chr4.2:1352544-1352563 None:intergenic 55.0%
!! CCTCCACGTCGGTTTCTCTT+CGG - chr4.2:1352549-1352568 None:intergenic 55.0%
AGCTCAGAGGCGGCATCCTT+TGG + chr4.2:1351148-1351167 MS.gene30248:CDS 60.0%
AGTGTGATATCCTCCCCGCC+CGG + chr4.2:1351902-1351921 MS.gene30248:CDS 60.0%
CCGAAGAGAAACCGACGTGG+AGG + chr4.2:1352546-1352565 MS.gene30248:CDS 60.0%
CTGCCGAAGAGAAACCGACG+TGG + chr4.2:1352543-1352562 MS.gene30248:CDS 60.0%
GGGATCCTAGAGCTCAGAGG+CGG + chr4.2:1351138-1351157 MS.gene30248:CDS 60.0%
GTGGACATACCGGGGAGGAA+TGG + chr4.2:1352654-1352673 MS.gene30248:CDS 60.0%
GTGGTTCCCCCGGAACATTG+AGG - chr4.2:1352574-1352593 None:intergenic 60.0%
TCAGAGGCGGCATCCTTTGG+TGG + chr4.2:1351151-1351170 MS.gene30248:CDS 60.0%
! GGTGTTGGGTGGACATACCG+GGG + chr4.2:1352646-1352665 MS.gene30248:CDS 60.0%
! TAGGTTGGGGCCGTCTGACT+CGG + chr4.2:1351681-1351700 MS.gene30248:CDS 60.0%
!! CACGTCGGTTTCTCTTCGGC+AGG - chr4.2:1352545-1352564 None:intergenic 60.0%
AGGTTGGGGCCGTCTGACTC+GGG + chr4.2:1351682-1351701 MS.gene30248:CDS 65.0%
CACATCTCTTCGCGCTGCCG+TGG - chr4.2:1351464-1351483 None:intergenic 65.0%
CGCCGCCTCTTCCGAGATCT+TGG + chr4.2:1352068-1352087 MS.gene30248:CDS 65.0%
CGGCAGCGCGAAGAGATGTG+TGG + chr4.2:1351464-1351483 MS.gene30248:CDS 65.0%
GGATGCCGCCTCTGAGCTCT+AGG - chr4.2:1351146-1351165 None:intergenic 65.0%
GTTGGGTGGACATACCGGGG+AGG + chr4.2:1352649-1352668 MS.gene30248:CDS 65.0%
AGTGTGTGGCCCCATCGGCC+GGG - chr4.2:1351923-1351942 None:intergenic 70.0%
GAGTGTGTGGCCCCATCGGC+CGG - chr4.2:1351924-1351943 None:intergenic 70.0%
TCGGGCGGCTGCACAGATGC+CGG + chr4.2:1352130-1352149 MS.gene30248:CDS 70.0%
ATCCTCCCCGCCCGGCCGAT+GGG + chr4.2:1351910-1351929 MS.gene30248:CDS 75.0%
TATCCTCCCCGCCCGGCCGA+TGG + chr4.2:1351909-1351928 MS.gene30248:CDS 75.0%
! GTGTGGCCCCATCGGCCGGG+CGG - chr4.2:1351920-1351939 None:intergenic 80.0%
! TCCTCCCCGCCCGGCCGATG+GGG + chr4.2:1351911-1351930 MS.gene30248:CDS 80.0%
! TGTGGCCCCATCGGCCGGGC+GGG - chr4.2:1351919-1351938 None:intergenic 80.0%
! GTGGCCCCATCGGCCGGGCG+GGG - chr4.2:1351918-1351937 None:intergenic 85.0%
! GCCCCATCGGCCGGGCGGGG+AGG - chr4.2:1351915-1351934 None:intergenic 90.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 1351121 1352733 1351121 ID=MS.gene30248
chr4.2 mRNA 1351121 1352733 1351121 ID=MS.gene30248.t1;Parent=MS.gene30248
chr4.2 exon 1351121 1352153 1351121 ID=MS.gene30248.t1.exon1;Parent=MS.gene30248.t1
chr4.2 CDS 1351121 1352153 1351121 ID=cds.MS.gene30248.t1;Parent=MS.gene30248.t1
chr4.2 exon 1352194 1352733 1352194 ID=MS.gene30248.t1.exon2;Parent=MS.gene30248.t1
chr4.2 CDS 1352194 1352733 1352194 ID=cds.MS.gene30248.t1;Parent=MS.gene30248.t1
Gene Sequence

>MS.gene30248

CCGGTTCTTGCAATATAGGGATCCTAGAGCTCAGAGGCGGCATCCTTTGGTGGATCCAGTCGTTGTGTCTGAGATTAGAAGATGTCTTGAAGAAGGTATTGAGTTCCAAGGGGAACTTCTGAATTTCAGAAAGGATGGCACTCCCTTAGTCAACAGACTTAGGCTTACGCCAATTCATGATGATGATGGAGTCGTGACACACATAATAGGTATCCAAATCTTTTCCGAAGCAAACATAGACTTGAACCGTGTTTCCTATCCAGTTTTCAGAGAGACTTGCATTCAAGATTTTGATAAAAATGCTAAATATTCTCCCAAAAGTGGAAAATTATTGTACACTCCACGGCAGCGCGAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTGGCGCACAACATATTGTCACGCTTGACACCGAGGGATGTTGCATCGATTGGTTCTGTTTGCAGGAGGATCCGTCAATTGACAAAGAACGAGCACGTTAGGAAGATGGTTTGTCAAAACGCATGGGGCAAAGAAGTGACAGGTACATTGGAACTGATGACCAAGAAGTTAGGTTGGGGCCGTCTGACTCGGGAGCTTACTACTCTTGAGGCTGTTTGCTGGAAAAAAGTTACAGTTGGAGGCGGGGTTGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAATAGGCTTGTATTATTTGGAGGTGAAGGAGTGGATATGCAGCCTATGGATGATACTTTTGTTCTAAATCTTGATGCTAAGAATCCAGAATGGCAAAGGGTTAGTGTGATATCCTCCCCGCCCGGCCGATGGGGCCACACACTCTCTTGCTTAAACAGTTCTTGGCTAGTTGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTTAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCGACATGGAAGGAAGTCTTCGGTGAAGCGCCGCCTCTTCCGAGATCTTGGCACAGCTCATGCACAATTGAAGGCTCTAAATTGGTTGTCTCGGGCGGCTGCACAGATGCCGGAGTACTTCTTAGTGACACATATTTACTTGACCTCACAATAGATAATCCTACATGGAGAGAAAATTCCAACTTCATGGACTCCTCCTTCTAGGTTAGGGCACTCACTCTCAGTTTATGGTAGGACAAAGATTCTCATGTTTGGTGGACTTGCAAAGAGTGGACACTTAAGGTTAAGATCAGGTGAGGCTTATACAATTGATTTAGAAGCTGAACAACCACAATGGAGGCAACTAGAATGTAGTGCATTCACAGGTTTATCAAATCAAAATGCTGTTGTACCTCCTCCTCGACTAGATCATGTTGCAGTAAGCATGCCTTGTGGGAGGGTTATTATATTTGGAGGTTCCATTGCAGGTCTTCATTCACCGTCTCAGCTATTTCTATTGGACCCTGCCGAAGAGAAACCGACGTGGAGGATCCTCAATGTTCCGGGGGAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGAGTTTTGGTGTTGGGTGGACATACCGGGGAGGAATGGGTGCTGAATGAGTTGCATGAGTTGTGCTTGGCAAGTCGACAAGACTCTGACATGTGA

Protein sequence

>MS.gene30248.t1

PVLAIUGSUSSEAASFGGSSRCVUDUKMSURRYUVPRGTSEFQKGWHSLSQQTUAYANSUUUWSRDTHNRYPNLFRSKHRLEPCFLSSFQRDLHSRFUUKCUIFSQKWKIIVHSTAARRDVWHSSAFUUSLGAQHIVTLDTEGCCIDWFCLQEDPSIDKERARUEDGLSKRMGQRSDRYIGTDDQEVRLGPSDSGAYYSUGCLLEKSYSWRRGUAFTLQFQCLCCRKUACIIWRURSGYAAYGUYFCSKSUCUESRMAKGUCDILPARPMGPHTLLLKQFLASCFWWMWUARIAUUCVCAUFGCSTADMEGSLRUSAASSEILAQLMHNURLUIGCLGRLHRCRNNPTWRENSNFMDSSFUVRALTLSLWUDKDSHVWWTCKEWTLKVKIRUGLYNUFRSUTTTMEATRMUCIHRFIKSKCCCTSSSTRSCCSKHALWEGYYIWRFHCRSSFTVSAISIGPCRRETDVEDPQCSGGTTUICLGSUHLCGWRDUSFGVGWTYRGGMGAEUVAUVVLGKSTRLUHV