Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30745.t1 | XP_003601147.2 | 91 | 379 | 34 | 0 | 1 | 379 | 1 | 379 | 3.60E-180 | 641 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30745.t1 | F4I8K2 | 45.0 | 313 | 167 | 3 | 33 | 344 | 41 | 349 | 1.9e-65 | 251.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30745.t1 | G7J473 | 91.0 | 379 | 34 | 0 | 1 | 379 | 1 | 379 | 2.6e-180 | 641.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86383 | MS.gene30745 | PPI |
| MS.gene30745 | MS.gene92601 | PPI |
| MS.gene36213 | MS.gene30745 | PPI |
| MS.gene30745 | MS.gene039460 | PPI |
| MS.gene30745 | MS.gene89034 | PPI |
| MS.gene34568 | MS.gene30745 | PPI |
| MS.gene30745 | MS.gene98262 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30745.t1 | MTR_3g073530 | 97.625 | 379 | 9 | 0 | 1 | 379 | 1 | 379 | 0.0 | 761 |
| MS.gene30745.t1 | MTR_2g097210 | 40.974 | 349 | 196 | 3 | 35 | 379 | 39 | 381 | 1.70e-86 | 267 |
| MS.gene30745.t1 | MTR_4g021755 | 41.796 | 323 | 183 | 3 | 21 | 343 | 23 | 340 | 2.78e-84 | 262 |
| MS.gene30745.t1 | MTR_7g498280 | 43.548 | 310 | 165 | 2 | 28 | 334 | 23 | 325 | 5.29e-78 | 243 |
| MS.gene30745.t1 | MTR_7g061780 | 43.974 | 307 | 163 | 4 | 18 | 323 | 5 | 303 | 1.60e-74 | 234 |
| MS.gene30745.t1 | MTR_1g101310 | 40.789 | 304 | 158 | 2 | 37 | 334 | 30 | 317 | 1.84e-68 | 218 |
| MS.gene30745.t1 | MTR_2g097210 | 44.403 | 268 | 142 | 2 | 35 | 301 | 39 | 300 | 3.73e-64 | 207 |
| MS.gene30745.t1 | MTR_2g103600 | 42.481 | 266 | 145 | 3 | 42 | 300 | 33 | 297 | 8.68e-63 | 204 |
| MS.gene30745.t1 | MTR_2g088290 | 27.372 | 274 | 139 | 7 | 64 | 337 | 5 | 218 | 2.74e-18 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30745.t1 | AT1G77860 | 54.885 | 348 | 152 | 3 | 33 | 379 | 41 | 384 | 3.26e-138 | 399 |
| MS.gene30745.t1 | AT1G77860 | 53.822 | 314 | 140 | 3 | 33 | 345 | 41 | 350 | 7.26e-118 | 346 |
| MS.gene30745.t1 | AT2G29050 | 42.136 | 337 | 190 | 3 | 43 | 379 | 57 | 388 | 7.74e-93 | 283 |
| MS.gene30745.t1 | AT1G63120 | 43.098 | 297 | 151 | 3 | 42 | 332 | 33 | 317 | 1.03e-78 | 245 |
| MS.gene30745.t1 | AT3G53780 | 39.466 | 337 | 194 | 4 | 43 | 379 | 67 | 393 | 1.24e-76 | 242 |
| MS.gene30745.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 2.13e-75 | 236 |
| MS.gene30745.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 2.13e-75 | 236 |
| MS.gene30745.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 2.13e-75 | 236 |
| MS.gene30745.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 2.13e-75 | 236 |
| MS.gene30745.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 2.13e-75 | 236 |
| MS.gene30745.t1 | AT5G07250 | 39.938 | 323 | 175 | 5 | 20 | 334 | 34 | 345 | 6.97e-74 | 233 |
| MS.gene30745.t1 | AT2G29050 | 40.690 | 290 | 130 | 5 | 43 | 301 | 57 | 335 | 4.53e-64 | 208 |
| MS.gene30745.t1 | AT3G53780 | 37.410 | 278 | 165 | 3 | 102 | 379 | 1 | 269 | 6.16e-62 | 200 |
| MS.gene30745.t1 | AT1G52580 | 40.278 | 288 | 158 | 6 | 20 | 301 | 7 | 286 | 1.76e-57 | 190 |
| MS.gene30745.t1 | AT3G53780 | 46.341 | 205 | 109 | 1 | 59 | 263 | 83 | 286 | 3.34e-57 | 189 |
| MS.gene30745.t1 | AT4G23070 | 39.414 | 307 | 179 | 2 | 13 | 319 | 2 | 301 | 7.26e-55 | 183 |
| MS.gene30745.t1 | AT1G12750 | 46.995 | 183 | 90 | 2 | 33 | 208 | 7 | 189 | 5.06e-51 | 169 |
| MS.gene30745.t1 | AT1G12750 | 46.995 | 183 | 90 | 2 | 33 | 208 | 7 | 189 | 5.66e-51 | 170 |
| MS.gene30745.t1 | AT5G07250 | 33.438 | 320 | 153 | 6 | 20 | 334 | 34 | 298 | 9.40e-47 | 162 |
| MS.gene30745.t1 | AT1G25290 | 33.333 | 150 | 96 | 3 | 108 | 256 | 159 | 305 | 1.83e-15 | 77.0 |
| MS.gene30745.t1 | AT1G25290 | 30.000 | 170 | 109 | 4 | 108 | 269 | 159 | 326 | 4.82e-14 | 73.2 |
Find 70 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTCTTGCAGTTCTTTA+TGG | 0.123493 | 3.1:-60219569 | MS.gene30745:CDS |
| GGTTCTTCTGGTGCTCTATT+TGG | 0.207313 | 3.1:-60220146 | MS.gene30745:CDS |
| ATCCCTGCTGTTGGTTCTTC+TGG | 0.258304 | 3.1:-60220158 | MS.gene30745:CDS |
| CATTGCTTTCAGAACTTGTT+TGG | 0.286947 | 3.1:-60220112 | MS.gene30745:CDS |
| AGCTAGACAGACCAGTTTCT+AGG | 0.291064 | 3.1:-60219762 | MS.gene30745:CDS |
| TTGTTGTAGGTTGGATGAAA+TGG | 0.322277 | 3.1:-60220815 | MS.gene30745:intron |
| ATTCGCCTAGAGCAGGAGTT+TGG | 0.324869 | 3.1:-60220670 | MS.gene30745:CDS |
| CACTTGACGATGACATGTTT+GGG | 0.326016 | 3.1:-60218703 | MS.gene30745:CDS |
| CACATGGGTGATTTCTGTTA+TGG | 0.348185 | 3.1:-60221253 | MS.gene30745:CDS |
| CTGGAAATATCATACCAAAA+AGG | 0.371080 | 3.1:-60220087 | MS.gene30745:intron |
| TTTGTGTGCAACTTCCTCAT+TGG | 0.377263 | 3.1:-60219952 | MS.gene30745:CDS |
| TCGGCGGCGGAGACGGCGGC+TGG | 0.392000 | 3.1:+60221281 | None:intergenic |
| TTTCAGAACTTGTTTGGAAC+TGG | 0.393026 | 3.1:-60220106 | MS.gene30745:CDS |
| CTTTACTTGAAGCTACTTGT+TGG | 0.397591 | 3.1:+60219839 | None:intergenic |
| TCACTTGACGATGACATGTT+TGG | 0.398308 | 3.1:-60218704 | MS.gene30745:CDS |
| GGTGCTCTATTTGGATTACT+AGG | 0.406774 | 3.1:-60220137 | MS.gene30745:CDS |
| TTCGCCTAGAGCAGGAGTTT+GGG | 0.411077 | 3.1:-60220669 | MS.gene30745:CDS |
| AGAGAAACAATCCTAGAAAC+TGG | 0.416199 | 3.1:+60219751 | None:intergenic |
| TTCTATATATGCAGATTGGC+TGG | 0.416350 | 3.1:-60219593 | MS.gene30745:intron |
| AGTGCAATCACCGTGAGAAT+TGG | 0.418544 | 3.1:+60221176 | None:intergenic |
| CTTGCTGAAAATCCTCTGTT+AGG | 0.431045 | 3.1:-60221120 | MS.gene30745:CDS |
| TGACGGAACGTCATCAAACT+TGG | 0.448219 | 3.1:-60220771 | MS.gene30745:CDS |
| CTTCAAAACATCCCTGCTGT+TGG | 0.452199 | 3.1:-60220167 | MS.gene30745:CDS |
| TTTGGGGAATGGCAACTTCA+AGG | 0.458362 | 3.1:-60218686 | MS.gene30745:CDS |
| AAAGGAATACAGTCAACATA+TGG | 0.463674 | 3.1:+60219515 | None:intergenic |
| CTCTGCAGTGTCATCTATGT+TGG | 0.465016 | 3.1:-60220694 | MS.gene30745:CDS |
| CAACAAGTAGCTTCAAGTAA+AGG | 0.476003 | 3.1:-60219838 | MS.gene30745:CDS |
| TGTCAACTCGGCGGCGGAGA+CGG | 0.480816 | 3.1:+60221274 | None:intergenic |
| TGTTGTAGGTTGGATGAAAT+GGG | 0.486882 | 3.1:-60220814 | MS.gene30745:intron |
| TTTATATCAGGATTCCTCCT+TGG | 0.489553 | 3.1:-60219889 | MS.gene30745:CDS |
| ACTGTATTCCTTTCACAAGC+TGG | 0.494213 | 3.1:-60219505 | MS.gene30745:CDS |
| TTAGCTGTATACCTCACAAA+AGG | 0.504592 | 3.1:+60219463 | None:intergenic |
| TCGAGTGGGAGCTTCTTCGC+TGG | 0.511254 | 3.1:+60221330 | None:intergenic |
| TGGCGATGAAGAACCCTAGT+TGG | 0.512974 | 3.1:+60221223 | None:intergenic |
| AACACTCACTTTGACATGGA+AGG | 0.515961 | 3.1:+60221096 | None:intergenic |
| AAGCTACTTGTTGGAACTGA+GGG | 0.529419 | 3.1:+60219848 | None:intergenic |
| AACGAGAACCTTCCAAGAGA+TGG | 0.532436 | 3.1:+60221150 | None:intergenic |
| TCCGCCGCCGAGTTGACACA+TGG | 0.533397 | 3.1:-60221269 | MS.gene30745:CDS |
| TGTTGGAATTCGCCTAGAGC+AGG | 0.535446 | 3.1:-60220677 | MS.gene30745:CDS |
| TTGCAGTGCCAGCTTGTGAA+AGG | 0.539450 | 3.1:+60219497 | None:intergenic |
| GCACCAGAAGAACCAACAGC+AGG | 0.542650 | 3.1:+60220155 | None:intergenic |
| GATTTGAGCTGCGGATCTTG+AGG | 0.543922 | 3.1:+60221303 | None:intergenic |
| GTTATGGTGTTAATCCAACT+AGG | 0.549878 | 3.1:-60221237 | MS.gene30745:CDS |
| AATCCTTGCTCGAGAGATGT+TGG | 0.561141 | 3.1:+60218651 | None:intergenic |
| CAACTCGGCGGCGGAGACGG+CGG | 0.566686 | 3.1:+60221277 | None:intergenic |
| ACGGCCCAAACTCCTGCTCT+AGG | 0.571688 | 3.1:+60220665 | None:intergenic |
| CCCATGTGTCAACTCGGCGG+CGG | 0.585405 | 3.1:+60221268 | None:intergenic |
| CGGCGGCTGGATTTGAGCTG+CGG | 0.587185 | 3.1:+60221294 | None:intergenic |
| TTATGGTGTTAATCCAACTA+GGG | 0.587660 | 3.1:-60221236 | MS.gene30745:CDS |
| ACGATGACATGTTTGGGGAA+TGG | 0.594814 | 3.1:-60218697 | MS.gene30745:CDS |
| AAATCACCCATGTGTCAACT+CGG | 0.596088 | 3.1:+60221262 | None:intergenic |
| TGCAGAGATTGATCGCAAGA+TGG | 0.597021 | 3.1:+60220710 | None:intergenic |
| AAACATACAGCAGAGTGAAG+AGG | 0.602409 | 3.1:+60219725 | None:intergenic |
| CACCAGAAGAACCAACAGCA+GGG | 0.607545 | 3.1:+60220156 | None:intergenic |
| TTTGAACACTCACTTTGACA+TGG | 0.608414 | 3.1:+60221092 | None:intergenic |
| ACTTGACGATGACATGTTTG+GGG | 0.614976 | 3.1:-60218702 | MS.gene30745:CDS |
| GATTGCTTCACCAATTCTCA+CGG | 0.629587 | 3.1:-60221186 | MS.gene30745:CDS |
| GAAGCTACTTGTTGGAACTG+AGG | 0.629637 | 3.1:+60219847 | None:intergenic |
| CGAATAGAAGAACAGTTCCA+AGG | 0.630132 | 3.1:+60219872 | None:intergenic |
| GGATCTTGAGGAAGATCGAG+TGG | 0.634181 | 3.1:+60221315 | None:intergenic |
| ACACCAACATCTCTCGAGCA+AGG | 0.643888 | 3.1:-60218654 | MS.gene30745:CDS |
| ACATCAACAGTTATTGCACA+TGG | 0.663755 | 3.1:-60219541 | MS.gene30745:CDS |
| GATCTTGAGGAAGATCGAGT+GGG | 0.666629 | 3.1:+60221316 | None:intergenic |
| CATAAGGCAGAAAACCAATG+AGG | 0.670425 | 3.1:+60219938 | None:intergenic |
| GACATGGAAGGACCTAACAG+AGG | 0.687166 | 3.1:+60221108 | None:intergenic |
| AGCTACTTGTTGGAACTGAG+GGG | 0.689227 | 3.1:+60219849 | None:intergenic |
| CCGCCGCCGAGTTGACACAT+GGG | 0.690890 | 3.1:-60221268 | MS.gene30745:CDS |
| TCACCCATGTGTCAACTCGG+CGG | 0.730803 | 3.1:+60221265 | None:intergenic |
| ATAGAAGAACAGTTCCAAGG+AGG | 0.740367 | 3.1:+60219875 | None:intergenic |
| GCAATCGTTGACGAGCATCG+TGG | 0.744729 | 3.1:+60221203 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAATCAAATTTTATCA+TGG | + | chr3.1:60220661-60220680 | None:intergenic | 10.0% |
| !!! | TTATTTTCTCAAAATATTAT+TGG | - | chr3.1:60219624-60219643 | MS.gene30745:intron | 10.0% |
| !!! | TTTTATTCTATTTAATTTGA+GGG | - | chr3.1:60220320-60220339 | MS.gene30745:intron | 10.0% |
| !! | AATTAGAAAAGAAATTTACA+CGG | + | chr3.1:60219356-60219375 | None:intergenic | 15.0% |
| !! | TAAAAATTACAGTTTACATT+AGG | - | chr3.1:60221077-60221096 | MS.gene30745:intron | 15.0% |
| !! | TTCAATAAATTTAACCAAAT+AGG | - | chr3.1:60220769-60220788 | MS.gene30745:CDS | 15.0% |
| !! | TTTAAATGCACAATAATAAA+TGG | - | chr3.1:60220631-60220650 | MS.gene30745:intron | 15.0% |
| !!! | AATTTCTTTTCTAATTCATT+TGG | - | chr3.1:60219360-60219379 | MS.gene30745:intron | 15.0% |
| !!! | GAATTTCTTTTTCAATTTAA+TGG | + | chr3.1:60220752-60220771 | None:intergenic | 15.0% |
| !!! | GTTTTATTCTATTTAATTTG+AGG | - | chr3.1:60220319-60220338 | MS.gene30745:intron | 15.0% |
| !!! | TTTATTCTATTTAATTTGAG+GGG | - | chr3.1:60220321-60220340 | MS.gene30745:intron | 15.0% |
| !!! | TTTTTGATCAATTTTTTCTT+TGG | - | chr3.1:60219984-60220003 | MS.gene30745:CDS | 15.0% |
| !! | AGTGATTAATTAAAGTGAAA+TGG | - | chr3.1:60219035-60219054 | MS.gene30745:intron | 20.0% |
| !!! | CAAGTGATATAAATTTTGTT+AGG | + | chr3.1:60220591-60220610 | None:intergenic | 20.0% |
| !!! | TCAATTTGAGTTTCTAATTT+AGG | - | chr3.1:60218954-60218973 | MS.gene30745:intron | 20.0% |
| !!! | TGAAATTGAACTTCATTTTA+GGG | - | chr3.1:60219103-60219122 | MS.gene30745:intron | 20.0% |
| !!! | TTCATTTTAGGGTTAATTTA+GGG | - | chr3.1:60219114-60219133 | MS.gene30745:intron | 20.0% |
| !!! | TTTACATTAGGTTGAATAAT+AGG | - | chr3.1:60221089-60221108 | MS.gene30745:intron | 20.0% |
| !!! | TTTGTTTTTAATTTGCAGTA+AGG | - | chr3.1:60219752-60219771 | MS.gene30745:CDS | 20.0% |
| ! | ACCTCTTCAGATTAAAAATT+AGG | + | chr3.1:60220693-60220712 | None:intergenic | 25.0% |
| ! | CATCAAATCATTAAATGAGA+AGG | - | chr3.1:60220379-60220398 | MS.gene30745:intron | 25.0% |
| ! | CTGTGTTTAATGTCTAATTT+AGG | - | chr3.1:60219006-60219025 | MS.gene30745:intron | 25.0% |
| ! | CTTGAAAAATTGTCTACATA+AGG | + | chr3.1:60220080-60220099 | None:intergenic | 25.0% |
| ! | TTCTTTCTATATATGCAGAT+TGG | - | chr3.1:60220402-60220421 | MS.gene30745:intron | 25.0% |
| ! | TTTGCATCATTTCAATCAAT+TGG | + | chr3.1:60219533-60219552 | None:intergenic | 25.0% |
| !! | GTGAAATTGAACTTCATTTT+AGG | - | chr3.1:60219102-60219121 | MS.gene30745:intron | 25.0% |
| !! | TTGATTTTGTCTCTGTATAT+CGG | - | chr3.1:60221039-60221058 | MS.gene30745:intron | 25.0% |
| !!! | CTGTATTTGGTGTTTAATTT+AGG | - | chr3.1:60219060-60219079 | MS.gene30745:intron | 25.0% |
| !!! | CTTCATTTTAGGGTTAATTT+AGG | - | chr3.1:60219113-60219132 | MS.gene30745:intron | 25.0% |
| !!! | TATATACTATCTGCTTTTGT+GGG | - | chr3.1:60219787-60219806 | MS.gene30745:CDS | 25.0% |
| !!! | TTGATCAATTTTTTCTTTGG+TGG | - | chr3.1:60219987-60220006 | MS.gene30745:intron | 25.0% |
| !!! | TTTTAATTTGCAGTAAGGAT+TGG | - | chr3.1:60219757-60219776 | MS.gene30745:CDS | 25.0% |
| AAAGGAATACAGTCAACATA+TGG | + | chr3.1:60220487-60220506 | None:intergenic | 30.0% | |
| AAGAAAAAGAGAAGCCATTA+AGG | + | chr3.1:60219815-60219834 | None:intergenic | 30.0% | |
| AAGTGAAATGGAACTGTATT+TGG | - | chr3.1:60219047-60219066 | MS.gene30745:intron | 30.0% | |
| CTGGAAATATCATACCAAAA+AGG | - | chr3.1:60219912-60219931 | MS.gene30745:CDS | 30.0% | |
| TGTTAGTAGTTTACCTGATT+TGG | - | chr3.1:60220844-60220863 | MS.gene30745:intron | 30.0% | |
| TTTAATGATTTGATGCATGC+CGG | + | chr3.1:60220374-60220393 | None:intergenic | 30.0% | |
| ! | GCCTAATTTTTAATCTGAAG+AGG | - | chr3.1:60220689-60220708 | MS.gene30745:CDS | 30.0% |
| ! | GGAATTTTATAATGCAACGA+TGG | - | chr3.1:60219144-60219163 | MS.gene30745:intron | 30.0% |
| ! | GGGTTAATTTAGGGTTTAAA+AGG | - | chr3.1:60219123-60219142 | MS.gene30745:intron | 30.0% |
| ! | GTTTCTAATTTAGGTTTCAG+AGG | - | chr3.1:60218963-60218982 | MS.gene30745:intron | 30.0% |
| ! | GTTTGTTGATATTAACTGCA+AGG | - | chr3.1:60220722-60220741 | MS.gene30745:CDS | 30.0% |
| ! | TCTACGAAAGAACTTTTTGA+CGG | - | chr3.1:60219211-60219230 | MS.gene30745:intron | 30.0% |
| ! | TGATTTTGTAATGTCAGTGT+TGG | - | chr3.1:60219456-60219475 | MS.gene30745:intron | 30.0% |
| ! | TTATGGTGTTAATCCAACTA+GGG | - | chr3.1:60218763-60218782 | MS.gene30745:intron | 30.0% |
| !! | CTATATACTATCTGCTTTTG+TGG | - | chr3.1:60219786-60219805 | MS.gene30745:CDS | 30.0% |
| !! | TGAGTTGAATTGAGTTTTGT+TGG | + | chr3.1:60221160-60221179 | None:intergenic | 30.0% |
| !!! | GAGTTGAATTGAGTTTTGTT+GGG | + | chr3.1:60221159-60221178 | None:intergenic | 30.0% |
| !!! | GTAGACAATTTTTCAAGCAT+TGG | - | chr3.1:60220083-60220102 | MS.gene30745:intron | 30.0% |
| AACAATGAGAAACAGCTATG+AGG | + | chr3.1:60219952-60219971 | None:intergenic | 35.0% | |
| AATCTGAAGAGGTCAATTGT+TGG | - | chr3.1:60220700-60220719 | MS.gene30745:CDS | 35.0% | |
| ACACCGGATACACATTTAAT+CGG | - | chr3.1:60219496-60219515 | MS.gene30745:CDS | 35.0% | |
| ACATCAACAGTTATTGCACA+TGG | - | chr3.1:60220458-60220477 | MS.gene30745:intron | 35.0% | |
| AGAGAAACAATCCTAGAAAC+TGG | + | chr3.1:60220251-60220270 | None:intergenic | 35.0% | |
| ATATAGCTAGTAGCCAAATC+AGG | + | chr3.1:60220860-60220879 | None:intergenic | 35.0% | |
| ATCTATAAAGCAGAGAACAG+TGG | + | chr3.1:60219675-60219694 | None:intergenic | 35.0% | |
| CAACAAGTAGCTTCAAGTAA+AGG | - | chr3.1:60220161-60220180 | MS.gene30745:CDS | 35.0% | |
| CAACCGATTAAATGTGTATC+CGG | + | chr3.1:60219502-60219521 | None:intergenic | 35.0% | |
| CTTCTATCTATTGTGCTTTC+CGG | - | chr3.1:60220352-60220371 | MS.gene30745:intron | 35.0% | |
| CTTTACTTGAAGCTACTTGT+TGG | + | chr3.1:60220163-60220182 | None:intergenic | 35.0% | |
| GCTGACATAACATTCCTATT+TGG | + | chr3.1:60220786-60220805 | None:intergenic | 35.0% | |
| TACTAACTGATATGTGTCAC+TGG | - | chr3.1:60220807-60220826 | MS.gene30745:CDS | 35.0% | |
| TGTCTTCTTGCAGTTCTTTA+TGG | - | chr3.1:60220430-60220449 | MS.gene30745:intron | 35.0% | |
| TTAGCTGTATACCTCACAAA+AGG | + | chr3.1:60220539-60220558 | None:intergenic | 35.0% | |
| TTCTATATATGCAGATTGGC+TGG | - | chr3.1:60220406-60220425 | MS.gene30745:intron | 35.0% | |
| TTGAATGTATCCACATGTGT+CGG | + | chr3.1:60219599-60219618 | None:intergenic | 35.0% | |
| TTTATATCAGGATTCCTCCT+TGG | - | chr3.1:60220110-60220129 | MS.gene30745:CDS | 35.0% | |
| TTTGAACACTCACTTTGACA+TGG | + | chr3.1:60218910-60218929 | None:intergenic | 35.0% | |
| ! | AGTGTTGTTGTTGTTGTTGT+AGG | - | chr3.1:60219171-60219190 | MS.gene30745:intron | 35.0% |
| ! | CATTGCTTTCAGAACTTGTT+TGG | - | chr3.1:60219887-60219906 | MS.gene30745:CDS | 35.0% |
| ! | GATTTGTTTCCATACTAGTC+AGG | - | chr3.1:60220953-60220972 | MS.gene30745:intron | 35.0% |
| ! | GTTATGGTGTTAATCCAACT+AGG | - | chr3.1:60218762-60218781 | MS.gene30745:intron | 35.0% |
| ! | TGAGGTATACAGCTAACTTT+TGG | - | chr3.1:60220543-60220562 | MS.gene30745:intron | 35.0% |
| ! | TGTTGTAGGTTGGATGAAAT+GGG | - | chr3.1:60219185-60219204 | MS.gene30745:intron | 35.0% |
| ! | TTGTTGTAGGTTGGATGAAA+TGG | - | chr3.1:60219184-60219203 | MS.gene30745:intron | 35.0% |
| ! | TTGTTGTTGTTGTTGTAGGT+TGG | - | chr3.1:60219175-60219194 | MS.gene30745:intron | 35.0% |
| ! | TTTCAGAACTTGTTTGGAAC+TGG | - | chr3.1:60219893-60219912 | MS.gene30745:CDS | 35.0% |
| !!! | AGCATTGGTGGTTTTATATC+AGG | - | chr3.1:60220098-60220117 | MS.gene30745:CDS | 35.0% |
| !!! | GACAATTTTTCAAGCATTGG+TGG | - | chr3.1:60220086-60220105 | MS.gene30745:intron | 35.0% |
| !!! | TTGAATTGAGTTTTGTTGGG+AGG | + | chr3.1:60221156-60221175 | None:intergenic | 35.0% |
| !!! | TTTTTTCTTTGGTGGAATGC+AGG | - | chr3.1:60219995-60220014 | MS.gene30745:intron | 35.0% |
| AAAAGTCCAGCGTGCAAAAA+TGG | + | chr3.1:60219269-60219288 | None:intergenic | 40.0% | |
| AAACATACAGCAGAGTGAAG+AGG | + | chr3.1:60220277-60220296 | None:intergenic | 40.0% | |
| AAATCACCCATGTGTCAACT+CGG | + | chr3.1:60218740-60218759 | None:intergenic | 40.0% | |
| AACACTCACTTTGACATGGA+AGG | + | chr3.1:60218906-60218925 | None:intergenic | 40.0% | |
| ACGACACATAGATACTGAAG+TGG | - | chr3.1:60219424-60219443 | MS.gene30745:intron | 40.0% | |
| ACTGTATTCCTTTCACAAGC+TGG | - | chr3.1:60220494-60220513 | MS.gene30745:intron | 40.0% | |
| ACTTGACGATGACATGTTTG+GGG | - | chr3.1:60221297-60221316 | MS.gene30745:CDS | 40.0% | |
| ATAGAAGAACAGTTCCAAGG+AGG | + | chr3.1:60220127-60220146 | None:intergenic | 40.0% | |
| ATTGCCAACAAGAAACAGTG+TGG | + | chr3.1:60220888-60220907 | None:intergenic | 40.0% | |
| CACATGGGTGATTTCTGTTA+TGG | - | chr3.1:60218746-60218765 | MS.gene30745:intron | 40.0% | |
| CACTTGACGATGACATGTTT+GGG | - | chr3.1:60221296-60221315 | MS.gene30745:CDS | 40.0% | |
| CATAAGGCAGAAAACCAATG+AGG | + | chr3.1:60220064-60220083 | None:intergenic | 40.0% | |
| CATAGATACTGAAGTGGAAG+TGG | - | chr3.1:60219430-60219449 | MS.gene30745:intron | 40.0% | |
| CGAATAGAAGAACAGTTCCA+AGG | + | chr3.1:60220130-60220149 | None:intergenic | 40.0% | |
| CGGATACACATTTAATCGGT+TGG | - | chr3.1:60219500-60219519 | MS.gene30745:CDS | 40.0% | |
| CTTGCTGAAAATCCTCTGTT+AGG | - | chr3.1:60218879-60218898 | MS.gene30745:intron | 40.0% | |
| GATTGCTTCACCAATTCTCA+CGG | - | chr3.1:60218813-60218832 | MS.gene30745:intron | 40.0% | |
| GGTGCTCTATTTGGATTACT+AGG | - | chr3.1:60219862-60219881 | MS.gene30745:CDS | 40.0% | |
| TCACTTGACGATGACATGTT+TGG | - | chr3.1:60221295-60221314 | MS.gene30745:CDS | 40.0% | |
| TGACAAACACATGCTTATGC+TGG | - | chr3.1:60221232-60221251 | MS.gene30745:CDS | 40.0% | |
| TGTACTACAACTGCAGACAA+TGG | - | chr3.1:60221262-60221281 | MS.gene30745:CDS | 40.0% | |
| TTTGTGTGCAACTTCCTCAT+TGG | - | chr3.1:60220047-60220066 | MS.gene30745:intron | 40.0% | |
| ! | AACAGAGGATTTTCAGCAAG+AGG | + | chr3.1:60218879-60218898 | None:intergenic | 40.0% |
| ! | AAGCTACTTGTTGGAACTGA+GGG | + | chr3.1:60220154-60220173 | None:intergenic | 40.0% |
| ! | AGACAGAGAAACCTTTTGTG+AGG | - | chr3.1:60220525-60220544 | MS.gene30745:intron | 40.0% |
| ! | CGAAAAGCTAAGCACCTTTT+TGG | + | chr3.1:60219929-60219948 | None:intergenic | 40.0% |
| ! | CTTTCCACACTGTTTCTTGT+TGG | - | chr3.1:60220881-60220900 | MS.gene30745:intron | 40.0% |
| ! | GATTGCACTTTTCCATCTCT+TGG | - | chr3.1:60218837-60218856 | MS.gene30745:intron | 40.0% |
| !! | TGTTTCTATGTTTTCCGCAC+TGG | - | chr3.1:60219387-60219406 | MS.gene30745:intron | 40.0% |
| AACGAGAACCTTCCAAGAGA+TGG | + | chr3.1:60218852-60218871 | None:intergenic | 45.0% | |
| AATCCTTGCTCGAGAGATGT+TGG | + | chr3.1:60221351-60221370 | None:intergenic | 45.0% | |
| ACGATGACATGTTTGGGGAA+TGG | - | chr3.1:60221302-60221321 | MS.gene30745:CDS | 45.0% | |
| AGCTAGACAGACCAGTTTCT+AGG | - | chr3.1:60220237-60220256 | MS.gene30745:intron | 45.0% | |
| AGTGCAATCACCGTGAGAAT+TGG | + | chr3.1:60218826-60218845 | None:intergenic | 45.0% | |
| CAGTATCTATGTGTCGTGTC+TGG | + | chr3.1:60219421-60219440 | None:intergenic | 45.0% | |
| CTCTGCAGTGTCATCTATGT+TGG | - | chr3.1:60219305-60219324 | MS.gene30745:intron | 45.0% | |
| CTTCAAAACATCCCTGCTGT+TGG | - | chr3.1:60219832-60219851 | MS.gene30745:CDS | 45.0% | |
| GATCTTGAGGAAGATCGAGT+GGG | + | chr3.1:60218686-60218705 | None:intergenic | 45.0% | |
| GGTTCTTCTGGTGCTCTATT+TGG | - | chr3.1:60219853-60219872 | MS.gene30745:CDS | 45.0% | |
| GTCAGACATCTGTTAGACAC+CGG | - | chr3.1:60219480-60219499 | MS.gene30745:CDS | 45.0% | |
| TGACGGAACGTCATCAAACT+TGG | - | chr3.1:60219228-60219247 | MS.gene30745:intron | 45.0% | |
| TGCAGAGATTGATCGCAAGA+TGG | + | chr3.1:60219292-60219311 | None:intergenic | 45.0% | |
| TGTGAGCTTCCTGACTAGTA+TGG | + | chr3.1:60220965-60220984 | None:intergenic | 45.0% | |
| TTTGGGGAATGGCAACTTCA+AGG | - | chr3.1:60221313-60221332 | MS.gene30745:CDS | 45.0% | |
| ! | AGCTACTTGTTGGAACTGAG+GGG | + | chr3.1:60220153-60220172 | None:intergenic | 45.0% |
| ! | GAAGCTACTTGTTGGAACTG+AGG | + | chr3.1:60220155-60220174 | None:intergenic | 45.0% |
| ! | GCACTTTTCCATCTCTTGGA+AGG | - | chr3.1:60218841-60218860 | MS.gene30745:intron | 45.0% |
| ! | TGCTTTTGTGGGTGCCTTAA+TGG | - | chr3.1:60219798-60219817 | MS.gene30745:CDS | 45.0% |
| !! | ACGTTTCCATTTTTGCACGC+TGG | - | chr3.1:60219260-60219279 | MS.gene30745:intron | 45.0% |
| ACACCAACATCTCTCGAGCA+AGG | - | chr3.1:60221345-60221364 | MS.gene30745:CDS | 50.0% | |
| ATTCGCCTAGAGCAGGAGTT+TGG | - | chr3.1:60219329-60219348 | MS.gene30745:intron | 50.0% | |
| CACCAGAAGAACCAACAGCA+GGG | + | chr3.1:60219846-60219865 | None:intergenic | 50.0% | |
| GACATGGAAGGACCTAACAG+AGG | + | chr3.1:60218894-60218913 | None:intergenic | 50.0% | |
| GATTTGAGCTGCGGATCTTG+AGG | + | chr3.1:60218699-60218718 | None:intergenic | 50.0% | |
| GGATCTTGAGGAAGATCGAG+TGG | + | chr3.1:60218687-60218706 | None:intergenic | 50.0% | |
| TGGCGATGAAGAACCCTAGT+TGG | + | chr3.1:60218779-60218798 | None:intergenic | 50.0% | |
| TGTTGGAATTCGCCTAGAGC+AGG | - | chr3.1:60219322-60219341 | MS.gene30745:intron | 50.0% | |
| TTCGCCTAGAGCAGGAGTTT+GGG | - | chr3.1:60219330-60219349 | MS.gene30745:intron | 50.0% | |
| TTGCAGTGCCAGCTTGTGAA+AGG | + | chr3.1:60220505-60220524 | None:intergenic | 50.0% | |
| ! | GCACTGACATTGCGTGTTGA+AGG | - | chr3.1:60219561-60219580 | MS.gene30745:CDS | 50.0% |
| ! | TTGCGTGTTGAAGGCGTGTT+TGG | - | chr3.1:60219570-60219589 | MS.gene30745:CDS | 50.0% |
| !! | ATCCCTGCTGTTGGTTCTTC+TGG | - | chr3.1:60219841-60219860 | MS.gene30745:CDS | 50.0% |
| !! | TGTTTGGTGTCCGACACATG+TGG | - | chr3.1:60219586-60219605 | MS.gene30745:intron | 50.0% |
| GCACCAGAAGAACCAACAGC+AGG | + | chr3.1:60219847-60219866 | None:intergenic | 55.0% | |
| GTCTGGTGTTTGTGCCAGTG+CGG | + | chr3.1:60219404-60219423 | None:intergenic | 55.0% | |
| TCACCCATGTGTCAACTCGG+CGG | + | chr3.1:60218737-60218756 | None:intergenic | 55.0% | |
| ! | GCAATCGTTGACGAGCATCG+TGG | + | chr3.1:60218799-60218818 | None:intergenic | 55.0% |
| ACGGCCCAAACTCCTGCTCT+AGG | + | chr3.1:60219337-60219356 | None:intergenic | 60.0% | |
| TCGAGTGGGAGCTTCTTCGC+TGG | + | chr3.1:60218672-60218691 | None:intergenic | 60.0% | |
| CCCATGTGTCAACTCGGCGG+CGG | + | chr3.1:60218734-60218753 | None:intergenic | 65.0% | |
| CGGCGGCTGGATTTGAGCTG+CGG | + | chr3.1:60218708-60218727 | None:intergenic | 65.0% | |
| TGTCAACTCGGCGGCGGAGA+CGG | + | chr3.1:60218728-60218747 | None:intergenic | 65.0% | |
| ! | CCGCCGCCGAGTTGACACAT+GGG | - | chr3.1:60218731-60218750 | MS.gene30745:intron | 65.0% |
| ! | TCCGCCGCCGAGTTGACACA+TGG | - | chr3.1:60218730-60218749 | MS.gene30745:intron | 65.0% |
| CAACTCGGCGGCGGAGACGG+CGG | + | chr3.1:60218725-60218744 | None:intergenic | 75.0% | |
| ! | TCGGCGGCGGAGACGGCGGC+TGG | + | chr3.1:60218721-60218740 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 60218624 | 60221397 | 60218624 | ID=MS.gene30745 |
| chr3.1 | mRNA | 60218624 | 60221397 | 60218624 | ID=MS.gene30745.t1;Parent=MS.gene30745 |
| chr3.1 | exon | 60221105 | 60221397 | 60221105 | ID=MS.gene30745.t1.exon1;Parent=MS.gene30745.t1 |
| chr3.1 | CDS | 60221105 | 60221397 | 60221105 | ID=cds.MS.gene30745.t1;Parent=MS.gene30745.t1 |
| chr3.1 | exon | 60220665 | 60220828 | 60220665 | ID=MS.gene30745.t1.exon2;Parent=MS.gene30745.t1 |
| chr3.1 | CDS | 60220665 | 60220828 | 60220665 | ID=cds.MS.gene30745.t1;Parent=MS.gene30745.t1 |
| chr3.1 | exon | 60220088 | 60220251 | 60220088 | ID=MS.gene30745.t1.exon3;Parent=MS.gene30745.t1 |
| chr3.1 | CDS | 60220088 | 60220251 | 60220088 | ID=cds.MS.gene30745.t1;Parent=MS.gene30745.t1 |
| chr3.1 | exon | 60219733 | 60220004 | 60219733 | ID=MS.gene30745.t1.exon4;Parent=MS.gene30745.t1 |
| chr3.1 | CDS | 60219733 | 60220004 | 60219733 | ID=cds.MS.gene30745.t1;Parent=MS.gene30745.t1 |
| chr3.1 | exon | 60219475 | 60219601 | 60219475 | ID=MS.gene30745.t1.exon5;Parent=MS.gene30745.t1 |
| chr3.1 | CDS | 60219475 | 60219601 | 60219475 | ID=cds.MS.gene30745.t1;Parent=MS.gene30745.t1 |
| chr3.1 | exon | 60218624 | 60218743 | 60218624 | ID=MS.gene30745.t1.exon6;Parent=MS.gene30745.t1 |
| chr3.1 | CDS | 60218624 | 60218743 | 60218624 | ID=cds.MS.gene30745.t1;Parent=MS.gene30745.t1 |
| Gene Sequence |
| Protein sequence |
